XM_017376058.1

Resource Type: 
Polypeptide
Name: 
XM_017376058.1
Identifier: 
XM_017376058.1-protein
Sequence: 
MASFMHKFGRSKSVVKRSKKHLEEALYKRLFKDGSSEISVRQQLNLFLKS
KKKVYKWEVDDTLKILRSRNRFYPALKLSESMAERGINKTVSDQAIHLDL
VAKAKGISAAEAYFVGLPETSKNHLTYGALLNCYCKESMTEKAEALMDKM
KELNLGLTAMPYNSLMTLYTKTGQPERIPAIIQEMKSGDIVPDSYTYNVW
MRALAAVNDISGVERVINDMKRDGRVVADWTTYSNLASIYVDAGQNVKAE
NALKELEKRNACKDLPAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTAN
ISYLNMIQVLVKLKDLQGAEKCFSDWQSNCSTYDIRIANALIGAYLNEGL
LNKAIELKAQSKKKGAKPNAKTWEIFLNYYLKEEDFKSAVDCVEKAISTG
RGDGSKWIPQTEITQRLLGHFEQNKDVESAERFVESLKKSVDEVGADVFE
SLIRTYVAAGRTNPIMRRRIKMDNVDLSVEGIKLLDAVCSE
Sequence Length: 
491
Sequence Checksum: 
933a1a3a0ab7f4dac5331f44a13d06ed
View location in JBrowse: 
DCARv2_Chr2:31124789..31127156+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017376058.1, derives from mRNA, XM_017376058.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017376058.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017376058.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AKF0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8529611.1}))

HSP 1 Score: 814.683 bits (2103), Expect = 0.000e+0
Identity = 387/489 (79.14%), Postives = 431/489 (88.14%), Query Frame = 0
 
Query:    3 SFMHKFGRSKSVVKRSKKHLEEALYKRLFKDGSSEISVRQQLNLFLKSKKKVYKWEVDDTLKILRSRNRFYPALKLSESMAERGINKTVSDQAIHLDLVAKAKGISAAEAYFVGLPETSKNHLTYGALLNCYCKESMTEKAEALMDKMKELNLGLTAMPYNSLMTLYTKTGQPERIPAIIQEMKSGDIVPDSYTYNVWMRALAAVNDISGVERVINDMKRDGRVVADWTTYSNLASIYVDAGQNVKAENALKELEKRNACKDLPAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVKLKDLQGAEKCFSDWQSNCSTYDIRIANALIGAYLNEGLLNKAIELKAQSKKKGAKPNAKTWEIFLNYYLKEEDFKSAVDCVEKAISTGRGDGSKWIPQTEITQRLLGHFEQNKDVESAERFVESLKKSVDEVGADVFESLIRTYVAAGRTNPIMRRRIKMDNVDLSVEGIKLLDAVCSE 491
            +FM +FGR+KSV KRSKK+LEEALYKRLFK+G  E+SVRQQLN FLKS K+VYKWEV  +L+ LR R  FYPALKLSE+M +RG+N TVSDQAIHLDL+AK +GI+AAE YF+GLPETSKNHLTYGALLNCYCKE M EKAEALM+KMKEL L L++MPYNSLMTLYTKTGQPERIPAIIQEMK+ D++PDSYTYNVWMRALAAVNDISGVERVI++MKRDGRV  DWTTYSNLASIYVDAG   KA+NALKELEKRNAC+DL AFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLV LKDL GAEKCF +W+S+CSTYDIR+AN LI AY  EGLL KA ELK +S+++GAKPNAKTWEIFL+YYL+  + KSAVDCVE AISTGRGDG KWIP  EI   L+GHFEQNKDVE AE F+E LKK+VD VG +VFESLIRTY  AGRTNPIMRRR+KM+NV+LS EG KLLD VC E
Sbjct:    2 AFMQQFGRTKSVAKRSKKYLEEALYKRLFKNGGDEVSVRQQLNQFLKSSKRVYKWEVGQSLRTLRQRKLFYPALKLSETMVKRGMNMTVSDQAIHLDLMAKTRGITAAENYFIGLPETSKNHLTYGALLNCYCKELMIEKAEALMEKMKELKLSLSSMPYNSLMTLYTKTGQPERIPAIIQEMKACDVMPDSYTYNVWMRALAAVNDISGVERVIDEMKRDGRVTGDWTTYSNLASIYVDAGLFQKAKNALKELEKRNACRDLSAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVDLKDLPGAEKCFREWESSCSTYDIRVANILIDAYTKEGLLEKAEELKERSRRRGAKPNAKTWEIFLDYYLEHGEIKSAVDCVENAISTGRGDGGKWIPSPEIIGNLMGHFEQNKDVEGAEGFMEVLKKAVDVVGVEVFESLIRTYAVAGRTNPIMRRRLKMENVELSEEGKKLLDMVCVE 490
[Close]
BLAST of XM_017376058.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7CD39 ((Uncharacterized protein {ECO:0000313|EMBL:MPA78830.1}) (Fragment))

HSP 1 Score: 814.683 bits (2103), Expect = 0.000e+0
Identity = 384/489 (78.53%), Postives = 432/489 (88.34%), Query Frame = 0
 
Query:    3 SFMHKFGRSKSVVKRSKKHLEEALYKRLFKDGSSEISVRQQLNLFLKSKKKVYKWEVDDTLKILRSRNRFYPALKLSESMAERGINKTVSDQAIHLDLVAKAKGISAAEAYFVGLPETSKNHLTYGALLNCYCKESMTEKAEALMDKMKELNLGLTAMPYNSLMTLYTKTGQPERIPAIIQEMKSGDIVPDSYTYNVWMRALAAVNDISGVERVINDMKRDGRVVADWTTYSNLASIYVDAGQNVKAENALKELEKRNACKDLPAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVKLKDLQGAEKCFSDWQSNCSTYDIRIANALIGAYLNEGLLNKAIELKAQSKKKGAKPNAKTWEIFLNYYLKEEDFKSAVDCVEKAISTGRGDGSKWIPQTEITQRLLGHFEQNKDVESAERFVESLKKSVDEVGADVFESLIRTYVAAGRTNPIMRRRIKMDNVDLSVEGIKLLDAVCSE 491
            +FM +FGR+KSV KRSKK+LEEALYKRLFKDGSSE+SVRQQLN F+KS K+VYKWEV  +LKILR R RFYPALKLSE+M +RG+N TVSDQAIHLDL+AK +G++AAE YF+GLPETSKNHLTYGALLNCYCKE M EKAEALM+K+KEL L L++MPYNSLMTLYTKTGQPERIPAIIQEMK+ D++PDSYTYNVWMRALAA+NDISGVERVI++MKRDGRV  DWTTYSNLASIYVDAG   KAE ALKELEKRNA +DL AFQFLITL+GRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLV L+DL GAEKCF +W+S CSTYDIR+ N LIGAY  EGLL KA ELK +S+++G KPNAKTWEIFL+YYLK  + KSAVDCVE AISTG+GDG KW+P  EI   L+GHFEQNKDVE AE FVE LKK+VDEVG +VFESLIRTY  AG+T+PIMRRR+KM+NV+LS EG KLLD VC E
Sbjct:   28 AFMQQFGRTKSVAKRSKKYLEEALYKRLFKDGSSEVSVRQQLNQFVKSSKRVYKWEVGHSLKILRQRKRFYPALKLSETMVKRGMNMTVSDQAIHLDLIAKTRGVTAAETYFIGLPETSKNHLTYGALLNCYCKELMIEKAEALMEKIKELKLALSSMPYNSLMTLYTKTGQPERIPAIIQEMKACDVMPDSYTYNVWMRALAAINDISGVERVIDEMKRDGRVTGDWTTYSNLASIYVDAGVFEKAEKALKELEKRNAYRDLSAFQFLITLHGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVNLEDLPGAEKCFREWESGCSTYDIRVTNVLIGAYTKEGLLEKAEELKERSRRRGVKPNAKTWEIFLDYYLKNGEIKSAVDCVENAISTGKGDGGKWVPSPEIIGNLMGHFEQNKDVEGAEGFVEILKKAVDEVGVEVFESLIRTYAVAGKTSPIMRRRLKMENVELSEEGKKLLDVVCVE 516
[Close]
BLAST of XM_017376058.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RES2 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PSS28511.1}))

HSP 1 Score: 808.52 bits (2087), Expect = 0.000e+0
Identity = 382/489 (78.12%), Postives = 434/489 (88.75%), Query Frame = 0
 
Query:    3 SFMHKFGRSKSVVKRSKKHLEEALYKRLFKDGSSEISVRQQLNLFLKSKKKVYKWEVDDTLKILRSRNRFYPALKLSESMAERGINKTVSDQAIHLDLVAKAKGISAAEAYFVGLPETSKNHLTYGALLNCYCKESMTEKAEALMDKMKELNLGLTAMPYNSLMTLYTKTGQPERIPAIIQEMKSGDIVPDSYTYNVWMRALAAVNDISGVERVINDMKRDGRVVADWTTYSNLASIYVDAGQNVKAENALKELEKRNACKDLPAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVKLKDLQGAEKCFSDWQSNCSTYDIRIANALIGAYLNEGLLNKAIELKAQSKKKGAKPNAKTWEIFLNYYLKEEDFKSAVDCVEKAISTGRGDGSKWIPQTEITQRLLGHFEQNKDVESAERFVESLKKSVDEVGADVFESLIRTYVAAGRTNPIMRRRIKMDNVDLSVEGIKLLDAVCSE 491
            +FM +F ++KSV KR  K+LEEALYKRLFK+GSSE+SVRQQLN FLKSKK+VYKWEV  +LKILR RNRFYPALKLSE+MAERG+NKTVSD AIHLDL+AKA+GI+AAEAYFV LPETSKNHLTYGAL NCYCKE MTEKAEAL++KM EL LGLT+MPYNSLMTLYTKTGQPE+IPAIIQEMK+ DI+PDSYTYNVWMRALAAV DISGVERVI++MKRDGR+V DWTTYSNLASIYVDAG   KAE+ALKELEKRNAC+DL AFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLV LKD+ GAEKCF +W+S CSTYDIR+AN LIGAY   GLL KA ELK +++++G KPNAKTWEIFL+YYLK  + KSAVDCV+ A+STGRGDG KWIP  +I + L+  FEQNKDVESAE FVE +KK+VDE+G ++FE LIRTY A+G+T+PIMRRR+KM+NV+LS E  KLLD VC E
Sbjct:    2 AFMQQFRKTKSVTKRGNKYLEEALYKRLFKEGSSEVSVRQQLNQFLKSKKRVYKWEVGHSLKILRHRNRFYPALKLSEAMAERGMNKTVSDHAIHLDLIAKARGIAAAEAYFVDLPETSKNHLTYGALFNCYCKELMTEKAEALLEKMNELKLGLTSMPYNSLMTLYTKTGQPEKIPAIIQEMKACDIMPDSYTYNVWMRALAAVGDISGVERVIDEMKRDGRIVGDWTTYSNLASIYVDAGLFEKAESALKELEKRNACRDLSAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVNLKDIPGAEKCFREWESGCSTYDIRVANVLIGAYAKAGLLEKAEELKERARRRGTKPNAKTWEIFLDYYLKNGEIKSAVDCVDNAVSTGRGDGGKWIPSPDIIRHLMLQFEQNKDVESAEGFVEIVKKAVDEIGVEIFEPLIRTYAASGKTSPIMRRRLKMENVELSEECKKLLDVVCVE 490
[Close]
BLAST of XM_017376058.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834G1X9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7124002.1}))

HSP 1 Score: 800.045 bits (2065), Expect = 0.000e+0
Identity = 376/489 (76.89%), Postives = 435/489 (88.96%), Query Frame = 0
 
Query:    3 SFMHKFGRSKSVVKRSKKHLEEALYKRLFKDGSSEISVRQQLNLFLKSKKKVYKWEVDDTLKILRSRNRFYPALKLSESMAERGINKTVSDQAIHLDLVAKAKGISAAEAYFVGLPETSKNHLTYGALLNCYCKESMTEKAEALMDKMKELNLGLTAMPYNSLMTLYTKTGQPERIPAIIQEMKSGDIVPDSYTYNVWMRALAAVNDISGVERVINDMKRDGRVVADWTTYSNLASIYVDAGQNVKAENALKELEKRNACKDLPAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVKLKDLQGAEKCFSDWQSNCSTYDIRIANALIGAYLNEGLLNKAIELKAQSKKKGAKPNAKTWEIFLNYYLKEEDFKSAVDCVEKAISTGRGDGSKWIPQTEITQRLLGHFEQNKDVESAERFVESLKKSVDEVGADVFESLIRTYVAAGRTNPIMRRRIKMDNVDLSVEGIKLLDAVCSE 491
            +FM +F  +KSV KRSKK+LEEALYKRLFK+GS E+SVRQQLN FLKS+K+VYKWEV  +LKILRSRNRFYPALKLSE+MAERG+NKTVSD AIHLDL+AKA+G++AAEAYF+ LPETSKNHLTYG+LLNCYCKE MTEKAEAL++KM EL LGLT+MPYNSLMTLYTKTGQPERIP+IIQEMK+ DI+PDSYTYNVWMRALA+  DISGVERVI++MKRDGRV  DWTTYSN+ASIY DAG   KAENALKELEK+NAC+DL AFQFLITLYGRTGNLLEVYRVWRSLRLAF KTANISYLNMIQVLV LKDL GAEKCF +W+S CSTYDIR+AN LI AY  +GLL KA ELK +++++GAKPNAKTWEIFL+YYLK  + KSAVDCV+ AIS+GRGDG KW+P  ++ + L+ HFE+NKDVE AE FVE LKK++DEVG ++FESLIRTY AAG+T+PIMRRR+KM+NV+LS   +KLLD VC+E
Sbjct:    2 AFMQQFKETKSVAKRSKKYLEEALYKRLFKEGSLEVSVRQQLNQFLKSRKRVYKWEVGHSLKILRSRNRFYPALKLSETMAERGMNKTVSDHAIHLDLIAKARGVAAAEAYFINLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMNELKLGLTSMPYNSLMTLYTKTGQPERIPSIIQEMKACDIMPDSYTYNVWMRALASGGDISGVERVIDEMKRDGRVTGDWTTYSNIASIYADAGLFGKAENALKELEKKNACRDLSAFQFLITLYGRTGNLLEVYRVWRSLRLAFRKTANISYLNMIQVLVNLKDLPGAEKCFREWESGCSTYDIRVANVLIRAYAKDGLLEKAEELKERARRRGAKPNAKTWEIFLDYYLKIGEIKSAVDCVDNAISSGRGDGGKWVPSPDVVRNLMRHFEENKDVEGAEGFVEILKKALDEVGLEIFESLIRTYAAAGKTSPIMRRRLKMENVELSEGSMKLLDVVCAE 490
[Close]
BLAST of XM_017376058.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DUW2 ((Uncharacterized protein {ECO:0000313|EMBL:THG07081.1}))

HSP 1 Score: 793.497 bits (2048), Expect = 0.000e+0
Identity = 376/487 (77.21%), Postives = 432/487 (88.71%), Query Frame = 0
 
Query:    3 SFMHKFGRSKSVVKRSKKHLEEALYKRLFKDGSSEISVRQQLNLFLKSKKKVYKWEVDDTLKILRSRNRFYPALKLSESMAERGINKTVSDQAIHLDLVAKAKGISAAEAYFVGLPETSKNHLTYGALLNCYCKESMTEKAEALMDKMKELNLGLTAMPYNSLMTLYTKTGQPERIPAIIQEMKSGDIVPDSYTYNVWMRALAAVNDISGVERVINDMKRDGRVVADWTTYSNLASIYVDAGQNVKAENALKELEKRNACKDLPAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVKLKDLQGAEKCFSDWQSNCSTYDIRIANALIGAYLNEGLLNKAIELKAQSKKKGAKPNAKTWEIFLNYYLKEEDFKSAVDCVEKAISTGRGDGSKWIPQTEITQRLLGHFEQNKDVESAERFVESLKKSVDEVGADVFESLIRTYVAAGRTNPIMRRRIKMDNVDLSVEGIKLLDAVC 489
            +FM +F  +KSV KRSKK+LEEALYKRLFKDGSSE+SVRQQLN FLKSKK+V+KWEV  +LKILR RNRFYPALKLSE+MAERG+NKTVSDQAIHLDLVAKA+GI+AAE YF+ LPETSKNHLTYGALLNCYCKE MTEKAEAL++KMKEL LGLT+MPYNSLMTLYTKTGQPE+IP I+QEMK+ DI+PDSYTYNVWMRALAAV+DISGVERVI++MKRDGRVV DWTTYSNLASIYVDAG   KAE ALKELEKRNA +DL AFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLV LKDL GAEKCF +W+S CSTYDIR+AN LIGAY  EGLL KA E K +++++G K N KTWEIFL+YYL+  + KSAV+CV+ AISTGRGDG KWIP  EIT++ + +FE+NKDV+ AERF+  L+K+VDE+G++ FESLIR Y AAGRT+ ++RRR+KM+NV+LS +  KLLD VC
Sbjct:    2 AFMQQFRETKSVAKRSKKYLEEALYKRLFKDGSSEVSVRQQLNQFLKSKKRVFKWEVGHSLKILRQRNRFYPALKLSETMAERGMNKTVSDQAIHLDLVAKARGIAAAETYFIELPETSKNHLTYGALLNCYCKELMTEKAEALLEKMKELKLGLTSMPYNSLMTLYTKTGQPEKIPTIVQEMKACDIMPDSYTYNVWMRALAAVSDISGVERVIDEMKRDGRVVGDWTTYSNLASIYVDAGLFEKAEKALKELEKRNARRDLSAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVNLKDLPGAEKCFREWESRCSTYDIRVANVLIGAYAREGLLEKAEEFKERARRRGGKSNVKTWEIFLDYYLRNGEIKSAVECVDNAISTGRGDGQKWIPSLEITKKFMQNFERNKDVDGAERFLGILEKAVDELGSEAFESLIRIYAAAGRTSQMLRRRVKMENVELSDDCKKLLDKVC 488
[Close]
BLAST of XM_017376058.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1UQC6 ((Uncharacterized protein {ECO:0000313|EMBL:KAB1202714.1}))

HSP 1 Score: 768.844 bits (1984), Expect = 0.000e+0
Identity = 366/491 (74.54%), Postives = 422/491 (85.95%), Query Frame = 0
 
Query:    1 MASFMHKFGRSKSVVKRSKKHLEEALYKRLFKDGSSEISVRQQLNLFLKSKKKVYKWEVDDTLKILRSRNRFYPALKLSESMAERGINKTVSDQAIHLDLVAKAKGISAAEAYFVGLPETSKNHLTYGALLNCYCKESMTEKAEALMDKMKELNLGLTAMPYNSLMTLYTKTGQPERIPAIIQEMKSGDIVPDSYTYNVWMRALAAVNDISGVERVINDMKRDGRVVADWTTYSNLASIYVDAGQNVKAENALKELEKRNACKDLPAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVKLKDLQGAEKCFSDWQSNCSTYDIRIANALIGAYLNEGLLNKAIELKAQSKKKGAKPNAKTWEIFLNYYLKEEDFKSAVDCVEKAISTGRGDGSKWIPQTEITQRLLGHFEQNKDVESAERFVESLKKSVDEVGADVFESLIRTYVAAGRTNPIMRRRIKMDNVDLSVEGIKLLDAVCSE 491
            MA    +FGR+KSV KRSKK LEEALY RLF++G SE+SVR QLN FLKS K+VYKWEV DTLK LR R  ++PALKLSE+M +RG+NKTVSDQA+HLDLV+K +GI+AAE YFVGLPE+SKNHL YGALLNCYCKE MTEKAEALM+KMKELNL LT+MPYNSLMTLY K GQPE+IPAIIQEMK+ +I+ DSYTYNVW+RALAAVNDI+ VERV+++MKRDGRV  DWTTYSNLASIYVDAG   KAE ALKELEKRNA KDL A+QFLITLYGRTGNLLEVYRVWRSLRLAFPKTAN SYLNMIQ LV LKDL GAEKCF +W+S CSTYDIRIANALIGAY  EGLL KA ELK +++++GAKPNAKTWEIFLNYYLK  +FK AVDCV  A+S GRGDG KW+P + +   L+GHFEQ KDV+SAE F+E LKK+VD +GA+VFESLIRTY AAGRT+P +RRR+KM+NV+++   +KLL+ +C E
Sbjct:    1 MALQQFQFGRTKSVAKRSKKFLEEALYTRLFREGGSEVSVRHQLNQFLKSHKRVYKWEVGDTLKKLRERKLYFPALKLSETMCKRGMNKTVSDQAVHLDLVSKTRGIAAAENYFVGLPESSKNHLCYGALLNCYCKELMTEKAEALMEKMKELNLPLTSMPYNSLMTLYLKNGQPEKIPAIIQEMKASNIMLDSYTYNVWIRALAAVNDIAVVERVVDEMKRDGRVAGDWTTYSNLASIYVDAGFLEKAEKALKELEKRNAYKDLSAYQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANTSYLNMIQALVNLKDLPGAEKCFREWESGCSTYDIRIANALIGAYAKEGLLEKAEELKERARRRGAKPNAKTWEIFLNYYLKSGEFKLAVDCVANAVSIGRGDGGKWVPPSVVVSSLMGHFEQEKDVDSAEGFLEILKKAVDNIGAEVFESLIRTYAAAGRTSPAIRRRLKMENVEVNEACMKLLETICVE 491
[Close]
BLAST of XM_017376058.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0EY89 ((Tetratricopeptide repeat (TPR)-like superfamily protein {ECO:0000313|EMBL:GFY91402.1}))

HSP 1 Score: 766.148 bits (1977), Expect = 0.000e+0
Identity = 372/500 (74.40%), Postives = 421/500 (84.20%), Query Frame = 0
 
Query:    3 SFMHKFGRSKSVVKRSKKHLEEALYKRLFKDGSSEISVRQQLNLFLKSKKKVYKWEVDDTLKILRSRNRFYPALKL-----------SESMAERGINKTVSDQAIHLDLVAKAKGISAAEAYFVGLPETSKNHLTYGALLNCYCKESMTEKAEALMDKMKELNLGLTAMPYNSLMTLYTKTGQPERIPAIIQEMKSGDIVPDSYTYNVWMRALAAVNDISGVERVINDMKRDGRVVADWTTYSNLASIYVDAGQNVKAENALKELEKRNACKDLPAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVKLKDLQGAEKCFSDWQSNCSTYDIRIANALIGAYLNEGLLNKAIELKAQSKKKGAKPNAKTWEIFLNYYLKEEDFKSAVDCVEKAISTGRGDGSKWIPQTEITQRLLGHFEQNKDVESAERFVESLKKSVDEVGADVFESLIRTYVAAGRTNPIMRRRIKMDNVDLSVEGIKLLDAVCSE 491
            +FM KF ++KSV KR  K+LEEALYK LFK+GSSE+SVRQQLN FLKSKK+VYKWEV  +LKIL  R+RF PALKL           S    E G+NKTVSD AIH+DL+AKA+GI+AAEAYF+ LPETSKNHLTYGAL NCYCKE +TEKAEAL++KM EL LGLT+M YNSLMTLYT+TGQPE+IPAIIQEMK+ DI+PDSYTYNVWMRALAAV DISGVERVI++MKRDGRV  DWTTYSNLASIYVDAG   KAE ALKELEKRNAC+DL AFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLV LK + GAEKCF +W+S CSTYDIR+AN LIGAY   GLL KA ELK Q++++G KPNAKTWEIFL+YYLK  + KSAVDCV+ AISTGRGDG KWIP  +I + L+ HFEQNKDVE+AE FVE LKK VDEVG ++FE LIRTY AA +T+PIMRRR+KM+NV+LS +  KLLD VC E
Sbjct:    2 AFMQKFLQTKSVTKRGNKYLEEALYKWLFKEGSSEVSVRQQLNQFLKSKKRVYKWEVGHSLKILHHRDRFNPALKLLAWNDDLLAVPSFRKLEMGMNKTVSDHAIHIDLIAKARGIAAAEAYFIDLPETSKNHLTYGALFNCYCKELVTEKAEALLEKMNELKLGLTSMHYNSLMTLYTQTGQPEKIPAIIQEMKAYDIMPDSYTYNVWMRALAAVGDISGVERVIDEMKRDGRVAGDWTTYSNLASIYVDAGFFEKAEKALKELEKRNACRDLSAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVNLKYIHGAEKCFREWESGCSTYDIRVANVLIGAYAKAGLLEKAEELKEQARRRGTKPNAKTWEIFLDYYLKNGEIKSAVDCVDNAISTGRGDGRKWIPAPDIVRHLMQHFEQNKDVEAAEGFVEILKKVVDEVGVEIFEPLIRTYAAASKTSPIMRRRLKMENVELSEDCKKLLDEVCVE 501
[Close]
BLAST of XM_017376058.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9IRC1 ((Uncharacterized protein {ECO:0000313|EMBL:SPD26551.1}))

HSP 1 Score: 765.763 bits (1976), Expect = 0.000e+0
Identity = 360/485 (74.23%), Postives = 419/485 (86.39%), Query Frame = 0
 
Query:    7 KFGRSKSVVKRSKKHLEEALYKRLFKDGSSEISVRQQLNLFLKSKKKVYKWEVDDTLKILRSRNRFYPALKLSESMAERGINKTVSDQAIHLDLVAKAKGISAAEAYFVGLPETSKNHLTYGALLNCYCKESMTEKAEALMDKMKELNLGLTAMPYNSLMTLYTKTGQPERIPAIIQEMKSGDIVPDSYTYNVWMRALAAVNDISGVERVINDMKRDGRVVADWTTYSNLASIYVDAGQNVKAENALKELEKRNACKDLPAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVKLKDLQGAEKCFSDWQSNCSTYDIRIANALIGAYLNEGLLNKAIELKAQSKKKGAKPNAKTWEIFLNYYLKEEDFKSAVDCVEKAISTGRGDGSKWIPQTEITQRLLGHFEQNKDVESAERFVESLKKSVDEVGADVFESLIRTYVAAGRTNPIMRRRIKMDNVDLSVEGIKLLDAVCSE 491
            + GR+KSV KRSKK+LEEALY +LFK+G SE++VR QLN F+K++K+VYKWEV DTL+ LR R  +YPALKLSE+MA+R + KTVSDQAIHLD+VAK +GISAAE YF+ LPE+SKNHL YGALLNCYCKE MTEKAEALM+KMKELNL LT+MPYNS+MTLYTKTGQPERIPAIIQEMK+  I+ DSYTYN+WMRALAAVNDI+GVERVI++MKRDGRV  DWTTYSNLASIYVDA    KAE ALKELEKRNACKDL AFQFLITLYGRTGNLLE+YR+WRSLRLAFPKTANISYLNMIQ LV LKDL GAEKCF +W+  CS YDIRIANALIGAY  EGLL KA E+K Q++++GAKPNAKTWEIFL+YY+K  + K AVDCV  AIS GRGDG KW+P + I   L+GHFEQ KDVE AE F+E LKK+VD +GA+VFESLIRTY AAGRT+P++RRR+KM+NV+++   +KLL+ +C E
Sbjct:    5 QLGRTKSVAKRSKKYLEEALYTKLFKEGGSEVTVRHQLNQFIKTRKRVYKWEVGDTLRKLRQRKLYYPALKLSETMAKRSMIKTVSDQAIHLDIVAKTRGISAAENYFIELPESSKNHLCYGALLNCYCKELMTEKAEALMEKMKELNLPLTSMPYNSVMTLYTKTGQPERIPAIIQEMKASHIMLDSYTYNLWMRALAAVNDITGVERVIDEMKRDGRVAGDWTTYSNLASIYVDARSFEKAEKALKELEKRNACKDLSAFQFLITLYGRTGNLLELYRLWRSLRLAFPKTANISYLNMIQALVNLKDLPGAEKCFREWEYGCSIYDIRIANALIGAYAKEGLLEKAEEIKEQARRRGAKPNAKTWEIFLDYYMKNREVKLAVDCVANAISVGRGDGKKWVPSSVIVSNLMGHFEQEKDVEGAEGFLEILKKAVDNLGAEVFESLIRTYAAAGRTSPVIRRRLKMENVEVNEACMKLLETICVE 489
[Close]
BLAST of XM_017376058.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6H851 ((Uncharacterized protein {ECO:0000313|EMBL:CCB48394.1}))

HSP 1 Score: 763.066 bits (1969), Expect = 0.000e+0
Identity = 359/487 (73.72%), Postives = 417/487 (85.63%), Query Frame = 0
 
Query:    5 MHKFGRSKSVVKRSKKHLEEALYKRLFKDGSSEISVRQQLNLFLKSKKKVYKWEVDDTLKILRSRNRFYPALKLSESMAERGINKTVSDQAIHLDLVAKAKGISAAEAYFVGLPETSKNHLTYGALLNCYCKESMTEKAEALMDKMKELNLGLTAMPYNSLMTLYTKTGQPERIPAIIQEMKSGDIVPDSYTYNVWMRALAAVNDISGVERVINDMKRDGRVVADWTTYSNLASIYVDAGQNVKAENALKELEKRNACKDLPAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVKLKDLQGAEKCFSDWQSNCSTYDIRIANALIGAYLNEGLLNKAIELKAQSKKKGAKPNAKTWEIFLNYYLKEEDFKSAVDCVEKAISTGRGDGSKWIPQTEITQRLLGHFEQNKDVESAERFVESLKKSVDEVGADVFESLIRTYVAAGRTNPIMRRRIKMDNVDLSVEGIKLLDAVCSE 491
            M +  R+K++ KRSKK+LEEALY RLFKDGSSE+SVRQQLN FLKS K+V+KWEV DT+K LR R RFYPALKLSE+MA+RG+N T+SDQAI+LDL+ K +G++AAE YF+ LPETSKNHLTYGALLNCYCKE +TEKAEALM++MKEL LGL++MPYNSLMTLYTK GQPE+IP IIQE+KS DI+PDSYTYN+WMRALAAVNDISGVERVI +MKRDGRV +DWTTYSNLASIYVDAG   KAE ALKELEKRNAC+DL AFQFLITLYGR GNLLEVYRVWRSLRLAFPKTAN+SYLNMIQVLV LKDL GAEKCF +W+S CS YDIR+ANALIGAY  +GLL KA ELK  ++++GAKPNAKTWEIFL Y+LK  + K AVDCV  AISTGRGDG KW+P  EI    + HFEQ KDV+ AE F+E LK +V+++G +VFESLIR Y AAGRT+P+MRRR+KM+NV++S    KLL+ V  E
Sbjct:    3 MPQLSRTKNIAKRSKKYLEEALYDRLFKDGSSEVSVRQQLNHFLKSSKRVFKWEVGDTVKKLRDRKRFYPALKLSETMAKRGMNMTISDQAIYLDLITKTRGVAAAENYFIDLPETSKNHLTYGALLNCYCKELLTEKAEALMERMKELKLGLSSMPYNSLMTLYTKIGQPEKIPTIIQELKSLDIMPDSYTYNIWMRALAAVNDISGVERVIEEMKRDGRVASDWTTYSNLASIYVDAGVFEKAEKALKELEKRNACRDLTAFQFLITLYGRIGNLLEVYRVWRSLRLAFPKTANVSYLNMIQVLVNLKDLPGAEKCFREWESGCSIYDIRVANALIGAYAKDGLLEKAEELKEHARRRGAKPNAKTWEIFLAYHLKNREMKQAVDCVANAISTGRGDGQKWVPSPEIIGVFMQHFEQEKDVDGAEGFLEILKSTVEDLGVEVFESLIRIYAAAGRTSPVMRRRLKMENVEVSDSCKKLLEEVSVE 489
[Close]
BLAST of XM_017376058.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2LAW4 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL03p058646:mrna}))

HSP 1 Score: 762.296 bits (1967), Expect = 0.000e+0
Identity = 366/491 (74.54%), Postives = 423/491 (86.15%), Query Frame = 0
 
Query:    1 MASFMHKFGRSKSVVKRSKKHLEEALYKRLFKDGSSEISVRQQLNLFLKSKKKVYKWEVDDTLKILRSRNRFYPALKLSESMAERGINKTVSDQAIHLDLVAKAKGISAAEAYFVGLPETSKNHLTYGALLNCYCKESMTEKAEALMDKMKELNLGLTAMPYNSLMTLYTKTGQPERIPAIIQEMKSGDIVPDSYTYNVWMRALAAVNDISGVERVINDMKRDGRVVADWTTYSNLASIYVDAGQNVKAENALKELEKRNACKDLPAFQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQVLVKLKDLQGAEKCFSDWQSNCSTYDIRIANALIGAYLNEGLLNKAIELKAQSKKKGAKPNAKTWEIFLNYYLKEEDFKSAVDCVEKAISTGRGDGSKWIPQTEITQRLLGHFEQNKDVESAERFVESLKKSVDEVGADVFESLIRTYVAAGRTNPIMRRRIKMDNVDLSVEGIKLLDAVCSE 491
            MA   H  GRSKSV KRSKK+LEEALY RLFK+G SE+SVR QLN F+K+ K+VYKWEV DTL+ LR R  +YPALKLSE+MA+RG+NKTVSDQAIHLDLVAK +GISAAE YF+ LPE+SKNHL YGALLNCYCKE MTEKAEALM+KMKELNL L++MPYNSLMTLYTKT QPE+IPAIIQEMK+  I+ D+YTYNVWMRALAAVNDI+GVERVI++MKRDGRV  DWTTYSNLASIYVDAG   KAE ALKELEKRNACKDL A+QFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQ LV +KDL GAEKCF +W+S CS YDIRIANALIGAY  EGLL KA E+K +++++GA PNAKTWEIFL+YY+K+ + K AVDCV  AIS GRGDG KW+P + +   L+GHFEQ KDV+ AE F+E+LK++VD +GA+VFESLIRTY AAGRT+PI+RRR+KM+NV+++    KLLD +C E
Sbjct:    1 MALLQH-LGRSKSVAKRSKKYLEEALYTRLFKEGGSELSVRHQLNQFIKTHKRVYKWEVGDTLRKLRQRKLYYPALKLSETMAKRGMNKTVSDQAIHLDLVAKTRGISAAENYFIDLPESSKNHLCYGALLNCYCKELMTEKAEALMEKMKELNLPLSSMPYNSLMTLYTKTEQPEKIPAIIQEMKASHIMFDAYTYNVWMRALAAVNDITGVERVIDEMKRDGRVAGDWTTYSNLASIYVDAGLFEKAEKALKELEKRNACKDLSAYQFLITLYGRTGNLLEVYRVWRSLRLAFPKTANISYLNMIQALVNVKDLPGAEKCFREWESGCSIYDIRIANALIGAYAKEGLLEKAEEIKERARRRGANPNAKTWEIFLDYYMKKRELKLAVDCVANAISIGRGDGKKWVPSSVVVSSLMGHFEQEKDVDGAEGFLENLKRAVDNLGAEVFESLIRTYAAAGRTSPIIRRRLKMENVEVNEACKKLLDTICVE 490
Match NameStatsDescription
A0A5J5AKF0E-Value: 0.000e+0, PID: 79.14(Uncharacterized protein {ECO:0000313|EMBL:KAA8529... [more]
A0A5B7CD39E-Value: 0.000e+0, PID: 78.53(Uncharacterized protein {ECO:0000313|EMBL:MPA7883... [more]
A0A2R6RES2E-Value: 0.000e+0, PID: 78.12(Pentatricopeptide repeat-containing protein {ECO:... [more]
A0A834G1X9E-Value: 0.000e+0, PID: 76.89(Uncharacterized protein {ECO:0000313|EMBL:KAF7124... [more]
A0A4S4DUW2E-Value: 0.000e+0, PID: 77.21(Uncharacterized protein {ECO:0000313|EMBL:THG0708... [more]
A0A6A1UQC6E-Value: 0.000e+0, PID: 74.54(Uncharacterized protein {ECO:0000313|EMBL:KAB1202... [more]
A0A7J0EY89E-Value: 0.000e+0, PID: 74.40(Tetratricopeptide repeat (TPR)-like superfamily p... [more]
A0A2N9IRC1E-Value: 0.000e+0, PID: 74.23(Uncharacterized protein {ECO:0000313|EMBL:SPD2655... [more]
F6H851E-Value: 0.000e+0, PID: 73.72(Uncharacterized protein {ECO:0000313|EMBL:CCB4839... [more]
A0A7N2LAW4E-Value: 0.000e+0, PID: 74.54(Uncharacterized protein {ECO:0000313|EnsemblPlant... [more]
back to top
Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.