Resource Type:
Polypeptide
Name:
XM_017378943.1
Identifier:
XM_017378943.1-protein
Sequence:
MENSQTESNRENNGGFSSPVDSEHKATKLRIQSVAAPHMRAFHLSWISFF
ACFVSTFAAPPLIPLIRDNLDLTSTDIGNAGVAAVSGAVFARIVMGTLCD
LFGPRVASAALMLLTTPAVYCSALANSPASFLLVRFFTGFSLSTFVSTQY
WMSSMFSAPVVGTANGVAAGWGNLGGGATQLIMPYVFTLIHHIGATKFTA
WRIAFFVPAVFQTLSAYSVFFLGQDLPDGDFAKLQKSGDKHKDKFSQVFY
QAITNYRGWILALTYGYCFGVELTVDNIIAQYFYDRFHVNLHTAGIIAAS
FGLANLFSRPLGGYVSDVMATRYGMRGRLWTSXXXXXXXLFLVQILGGCL
CVLLGRLGSLSTSVTVMLVFSVFVQASCGLTYGVVPFVSRRSLGVISGLI
GGGGNVGAVLTQVVFFRGSRFKTETGITLMGVTIICCTLPMMFIYFPQWG
GLFWGPSSKGITEENYYMSEWSKEEQEQGFHKASLKFANNSKGERGKRVA
SAPTPLEGTPESYGHV
Sequence Length:
516
Sequence Checksum:
e6c81e2eac5cb8d5be1ee8cdc8918ede
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017378943.1, derives from mRNA, XM_017378943.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017378943.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017378943.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9SMF4 ((high affinity nitrate transporter 2.5 {ECO:0000313|RefSeq:XP_011071124.1, ECO:0000313|RefSeq:XP_011071125.1}))
HSP 1 Score: 788.104 bits (2034), Expect = 0.000e+0
Identity = 395/513 (77.00%), Postives = 452/513 (88.11%), Query Frame = 0
Match: A0A6I9SMF4 ((high affinity nitrate transporter 2.5 {ECO:0000313|RefSeq:XP_011071124.1, ECO:0000313|RefSeq:XP_011071125.1}))
HSP 1 Score: 788.104 bits (2034), Expect = 0.000e+0
Identity = 395/513 (77.00%), Postives = 452/513 (88.11%), Query Frame = 0
Query: 1 MENSQTESNRENNGGFSSPVDSEHKATKLRIQSVAAPHMRAFHLSWISFFACFVSTFAAPPLIPLIRDNLDLTSTDIGNAGVAAVSGAVFARIVMGTLCDLFGPRVASAALMLLTTPAVYCSALANSPASFLLVRFFTGFSLSTFVSTQYWMSSMFSAPVVGTANGVAAGWGNLGGGATQLIMPYVFTLIHHIGATKFTAWRIAFFVPAVFQTLSAYSVFFLGQDLPDGDFAKLQKSGDKHKDKFSQVFYQAITNYRGWILALTYGYCFGVELTVDNIIAQYFYDRFHVNLHTAGIIAASFGLANLFSRPLGGYVSDVMATRYGMRGRLWTSXXXXXXXLFLVQILGGCLCVLLGRLGSLSTSVTVMLVFSVFVQASCGLTYGVVPFVSRRSLGVISGLIGGGGNVGAVLTQVVFFRGSRFKTETGITLMGVTIICCTLPMMFIYFPQWGGLFWGPSSKGITEENYYMSEWSKEEQEQGFHKASLKFANNSKGERGKRVASAPTPLEGTPESY 513
ME SQ + F+ PVDSEHKAT+ R+ SVAAPHMRAFHLSWISFFACFVSTFAAPPL+P+IRDNLDLT+TDIGNAG+AAVSGAVFARI MGT CDLFGPR+ASA+L LLT PAVYC+++ANS SFLLVRFFTGFSL+TFVSTQ+WMSSMFSA VVGTANGVA GWGNLGGGATQLIMP VF LIHHIGATKFTAWRIAFF+PA+FQTLSAY +FFLGQDLPDG++++L KSGDKHKD F+QVF+ A+TNYRGWILALTYGYCFGVELT+DNIIAQYFYDRF+VNLHTAGIIAASFGLANLFSRP GG +SD+MA ++GMRGRLWT L++VQ LGG C+LLG++GSL S+ VML+FSVFVQA+CGLT+GVVPFVSRRSLG+ISG+ GGGGNVGAVLTQV+FFRGSR+ TETG+TLMGV IICCTL + I+FPQWGG+F GP+SK TEE+YYMSEW+ E+EQGFHKASLKF+ NS+ ERGKR+ SAPTP TP++Y
Sbjct: 1 MEISQGGDDSYQKK-FALPVDSEHKATEFRLFSVAAPHMRAFHLSWISFFACFVSTFAAPPLLPIIRDNLDLTATDIGNAGIAAVSGAVFARIAMGTACDLFGPRLASASLTLLTAPAVYCTSIANSAVSFLLVRFFTGFSLATFVSTQFWMSSMFSARVVGTANGVAGGWGNLGGGATQLIMPLVFDLIHHIGATKFTAWRIAFFIPALFQTLSAYGIFFLGQDLPDGNYSQLHKSGDKHKDNFAQVFHHAVTNYRGWILALTYGYCFGVELTIDNIIAQYFYDRFNVNLHTAGIIAASFGLANLFSRPGGGMLSDLMAKKFGMRGRLWT--------LWIVQTLGGVFCILLGKVGSLGVSIAVMLIFSVFVQAACGLTFGVVPFVSRRSLGIISGMTGGGGNVGAVLTQVIFFRGSRYSTETGLTLMGVMIICCTLLITLIHFPQWGGMFCGPASKSTTEEDYYMSEWNSAEKEQGFHKASLKFSENSRSERGKRIGSAPTPNNSTPDTY 504
BLAST of XM_017378943.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RER8 ((High affinity nitrate transporter 2.5 like {ECO:0000313|EMBL:PSS28507.1}))
HSP 1 Score: 780.4 bits (2014), Expect = 0.000e+0
Identity = 388/514 (75.49%), Postives = 453/514 (88.13%), Query Frame = 0
Match: A0A2R6RER8 ((High affinity nitrate transporter 2.5 like {ECO:0000313|EMBL:PSS28507.1}))
HSP 1 Score: 780.4 bits (2014), Expect = 0.000e+0
Identity = 388/514 (75.49%), Postives = 453/514 (88.13%), Query Frame = 0
Query: 1 MENSQTESNRENNG-GFSSPVDSEHKATKLRIQSVAAPHMRAFHLSWISFFACFVSTFAAPPLIPLIRDNLDLTSTDIGNAGVAAVSGAVFARIVMGTLCDLFGPRVASAALMLLTTPAVYCSALANSPASFLLVRFFTGFSLSTFVSTQYWMSSMFSAPVVGTANGVAAGWGNLGGGATQLIMPYVFTLIHHIGATKFTAWRIAFFVPAVFQTLSAYSVFFLGQDLPDGDFAKLQKSGDKHKDKFSQVFYQAITNYRGWILALTYGYCFGVELTVDNIIAQYFYDRFHVNLHTAGIIAASFGLANLFSRPLGGYVSDVMATRYGMRGRLWTSXXXXXXXLFLVQILGGCLCVLLGRLGSLSTSVTVMLVFSVFVQASCGLTYGVVPFVSRRSLGVISGLIGGGGNVGAVLTQVVFFRGSRFKTETGITLMGVTIICCTLPMMFIYFPQWGGLFWGPSSKGITEENYYMSEWSKEEQEQGFHKASLKFANNSKGERGKRVASAPTPLEGTPESY 513
ME S +++ +N F+ PVDSEHKAT R+ SVAAPHMRAFHLSW+SFF CFVSTFAAPPLIP+IRDNL+LTSTDIGNAG+A+VSGAVFARI MGT CDLFGPR+ASA+L+LLT PAV+ +A+ANSP SFL+VRFFTGFSL+TFVSTQ+WMSS+FSA VVGTANGV+ GWGNLGGGATQLIMP VF++I IGA KFTAWRIAFF+PA+ QTLSA++VFFLGQDLPDG+F++L+KSG KHKD FSQVF+ A+TNYRGWILALTYGYCFGVELT+DNIIAQYFYDRF+VNLHTAGIIAASFGLAN+FSRP GG +SD++A RYGMRGRLW L++ Q LGG C++LGR+GSLS SVTVM++FSVFVQA+CGLT+GVVPFVSRRSLG+ISG+ GGGGNVGAVLTQV+FFRGSRFK ETGITLMG+ ++CCTLPM FIYFPQWGG+F GPSSK TEE+YYMSEWS E+E+GFH+ASLKFA+NS+ ERG+RV S TP + TP +Y
Sbjct: 1 MEKSDHDADTNSNPPKFALPVDSEHKATVFRLFSVAAPHMRAFHLSWVSFFCCFVSTFAAPPLIPIIRDNLNLTSTDIGNAGIASVSGAVFARITMGTACDLFGPRLASASLILLTAPAVFFTAIANSPVSFLMVRFFTGFSLATFVSTQFWMSSLFSARVVGTANGVSGGWGNLGGGATQLIMPLVFSVIRDIGAVKFTAWRIAFFIPALMQTLSAFAVFFLGQDLPDGNFSQLKKSGKKHKDNFSQVFHYAVTNYRGWILALTYGYCFGVELTIDNIIAQYFYDRFNVNLHTAGIIAASFGLANIFSRPAGGMISDIVAKRYGMRGRLWA--------LWIAQTLGGLFCIMLGRVGSLSVSVTVMVIFSVFVQAACGLTFGVVPFVSRRSLGIISGMTGGGGNVGAVLTQVIFFRGSRFKMETGITLMGIMMVCCTLPMAFIYFPQWGGMFCGPSSKAATEEDYYMSEWSSSEKEKGFHQASLKFADNSRSERGRRVGSETTPADQTPSTY 506
BLAST of XM_017378943.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A200RAX8 ((Major facilitator superfamily {ECO:0000313|EMBL:OVA19868.1}))
HSP 1 Score: 777.319 bits (2006), Expect = 0.000e+0
Identity = 372/506 (73.52%), Postives = 438/506 (86.56%), Query Frame = 0
Match: A0A200RAX8 ((Major facilitator superfamily {ECO:0000313|EMBL:OVA19868.1}))
HSP 1 Score: 777.319 bits (2006), Expect = 0.000e+0
Identity = 372/506 (73.52%), Postives = 438/506 (86.56%), Query Frame = 0
Query: 1 MENSQTESNRENNGGFSSPVDSEHKATKLRIQSVAAPHMRAFHLSWISFFACFVSTFAAPPLIPLIRDNLDLTSTDIGNAGVAAVSGAVFARIVMGTLCDLFGPRVASAALMLLTTPAVYCSALANSPASFLLVRFFTGFSLSTFVSTQYWMSSMFSAPVVGTANGVAAGWGNLGGGATQLIMPYVFTLIHHIGATKFTAWRIAFFVPAVFQTLSAYSVFFLGQDLPDGDFAKLQKSGDKHKDKFSQVFYQAITNYRGWILALTYGYCFGVELTVDNIIAQYFYDRFHVNLHTAGIIAASFGLANLFSRPLGGYVSDVMATRYGMRGRLWTSXXXXXXXLFLVQILGGCLCVLLGRLGSLSTSVTVMLVFSVFVQASCGLTYGVVPFVSRRSLGVISGLIGGGGNVGAVLTQVVFFRGSRFKTETGITLMGVTIICCTLPMMFIYFPQWGGLFWGPSS-KGITEENYYMSEWSKEEQEQGFHKASLKFANNSKGERGKRVASAPTP 505
ME ++ S E F PVDSE+KAT ++ SVA PHMRAFHLSWISFF+CFVSTFAAPPL+P+IRDNL+LT+TDIGNAG+A+VSGAVFAR+VMGT CDLFGPR+ASA+L+LLT+PAVY +A A+SP SFLLVRFFTGFSLSTFVSTQYWMS+MFSA VVGTANG+AAGWGNLGGGATQL+MP VF+LI IG+T+FTAWRIAFF+PA+FQTL+AY+VFF GQDLPDG+F +LQKSG+K KDK SQVFY ITNYRGWILALTYGY FGVELTVDNIIA+YFYDRF++ LHTAGIIAA FGLAN+ SRP GG +SD+MA R+GMRGRLW+ L+LVQ +GG LCV+LG++GSLS SVTVMLVFS FVQA+CGLT+GVVPFVSRRSLG+ISG+ G GGNVGAVLTQ++FF+GS++ ETGITLMG+ IICCTLP+ IYFPQWGG+F GPS+ + TEE YYMSEW+ +E+++G H SLKFA+ SK ERG+RVAS P P
Sbjct: 1 METNEAGSESERPK-FDLPVDSENKATNFKLVSVAKPHMRAFHLSWISFFSCFVSTFAAPPLLPIIRDNLNLTATDIGNAGIASVSGAVFARLVMGTACDLFGPRLASASLILLTSPAVYFTATASSPISFLLVRFFTGFSLSTFVSTQYWMSTMFSANVVGTANGIAAGWGNLGGGATQLLMPVVFSLIQKIGSTEFTAWRIAFFIPALFQTLTAYAVFFFGQDLPDGNFRRLQKSGEKAKDKLSQVFYHGITNYRGWILALTYGYSFGVELTVDNIIAEYFYDRFNLKLHTAGIIAACFGLANIVSRPAGGVISDMMAKRFGMRGRLWS--------LWLVQTIGGILCVVLGKVGSLSGSVTVMLVFSFFVQAACGLTFGVVPFVSRRSLGLISGMTGAGGNVGAVLTQLIFFKGSKYSKETGITLMGIMIICCTLPLWLIYFPQWGGMFCGPSTEEKATEEEYYMSEWNDKEKDKGLHHGSLKFADTSKSERGRRVASEPAP 497
BLAST of XM_017378943.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4AE09 ((high affinity nitrate transporter 2.5-like {ECO:0000313|RefSeq:XP_016474912.1}))
HSP 1 Score: 777.319 bits (2006), Expect = 0.000e+0
Identity = 385/511 (75.34%), Postives = 449/511 (87.87%), Query Frame = 0
Match: A0A1S4AE09 ((high affinity nitrate transporter 2.5-like {ECO:0000313|RefSeq:XP_016474912.1}))
HSP 1 Score: 777.319 bits (2006), Expect = 0.000e+0
Identity = 385/511 (75.34%), Postives = 449/511 (87.87%), Query Frame = 0
Query: 1 MENSQTESNRENNGGFSSPVDSEHKATKLRIQSVAAPHMRAFHLSWISFFACFVSTFAAPPLIPLIRDNLDLTSTDIGNAGVAAVSGAVFARIVMGTLCDLFGPRVASAALMLLTTPAVYCSALANSPASFLLVRFFTGFSLSTFVSTQYWMSSMFSAPVVGTANGVAAGWGNLGGGATQLIMPYVFTLIHHIGATKFTAWRIAFFVPAVFQTLSAYSVFFLGQDLPDGDFAKLQKSGDKHKDKFSQVFYQAITNYRGWILALTYGYCFGVELTVDNIIAQYFYDRFHVNLHTAGIIAASFGLANLFSRPLGGYVSDVMATRYGMRGRLWTSXXXXXXXLFLVQILGGCLCVLLGRLGSLSTSVTVMLVFSVFVQASCGLTYGVVPFVSRRSLGVISGLIGGGGNVGAVLTQVVFFRGSRFKTETGITLMGVTIICCTLPMMFIYFPQWGGLFWGPSSKGITEENYYMSEWSKEEQEQGFHKASLKFANNSKGERGKRVASAPTPLEGTPE 511
MEN ++ESN + F+ PVDSEHKAT+ R+ S +APHMR+FHLSWISFF+CFVSTFAAPPL+P+IRDNLDLT+TDIGNAG+AAVSGAVFARI MGT CDLFGPR+AS+AL+LLT PAV+ +A++NS SFLLVRFFTGFSL+TFVSTQ+WMSSMFSA VVGTANG+A GWGNLGGGATQLIMP VF+LIH IGAT+FTAWRIAF +PA+FQ LSAY+VFFLGQD+PDG++A+L KSG+KHKD S V Y A+TNYRGWILALTYGYCFGVELTVDNIIAQYF+DRFHVNLHTAGIIAASFGLANLFSRP GG +SD++A R+GMRGRL L++VQ +GG LCVLLG++ SLS S+ MLVFSVF QA+CGLT+G VPFVSRRSLG+ISG+ GGGGNVGAVLTQV+FFRG+R+ TETGIT MG+ IICCTLP+MFIYFPQWGG+ +GPSSKG+TEE+YYM EWS E+E GFH+AS+KFA NSK ERGK+V SAPTP++GTP
Sbjct: 1 MENMESESNADRK--FALPVDSEHKATEFRVYSASAPHMRSFHLSWISFFSCFVSTFAAPPLLPIIRDNLDLTATDIGNAGIAAVSGAVFARIAMGTACDLFGPRLASSALILLTAPAVFLTAISNSAISFLLVRFFTGFSLATFVSTQFWMSSMFSAKVVGTANGIAGGWGNLGGGATQLIMPLVFSLIHKIGATEFTAWRIAFLIPAMFQALSAYAVFFLGQDMPDGNYAQLHKSGEKHKDNMSDVLYHAVTNYRGWILALTYGYCFGVELTVDNIIAQYFFDRFHVNLHTAGIIAASFGLANLFSRPGGGILSDIVAKRFGMRGRL--------RALWIVQTIGGLLCVLLGKVESLSASIVAMLVFSVFCQAACGLTFGAVPFVSRRSLGIISGMTGGGGNVGAVLTQVIFFRGTRYSTETGITYMGIMIICCTLPIMFIYFPQWGGMCYGPSSKGLTEEDYYMKEWSLTEKENGFHQASMKFAGNSKSERGKKVESAPTPIDGTPN 501
BLAST of XM_017378943.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1BF74 ((Nitrate transporter {ECO:0000313|EnsemblPlants:PGSC0003DMT400043794}))
HSP 1 Score: 774.237 bits (1998), Expect = 0.000e+0
Identity = 380/504 (75.40%), Postives = 447/504 (88.69%), Query Frame = 0
Match: M1BF74 ((Nitrate transporter {ECO:0000313|EnsemblPlants:PGSC0003DMT400043794}))
HSP 1 Score: 774.237 bits (1998), Expect = 0.000e+0
Identity = 380/504 (75.40%), Postives = 447/504 (88.69%), Query Frame = 0
Query: 8 SNRENNGGFSSPVDSEHKATKLRIQSVAAPHMRAFHLSWISFFACFVSTFAAPPLIPLIRDNLDLTSTDIGNAGVAAVSGAVFARIVMGTLCDLFGPRVASAALMLLTTPAVYCSALANSPASFLLVRFFTGFSLSTFVSTQYWMSSMFSAPVVGTANGVAAGWGNLGGGATQLIMPYVFTLIHHIGATKFTAWRIAFFVPAVFQTLSAYSVFFLGQDLPDGDFAKLQKSGDKHKDKFSQVFYQAITNYRGWILALTYGYCFGVELTVDNIIAQYFYDRFHVNLHTAGIIAASFGLANLFSRPLGGYVSDVMATRYGMRGRLWTSXXXXXXXLFLVQILGGCLCVLLGRLGSLSTSVTVMLVFSVFVQASCGLTYGVVPFVSRRSLGVISGLIGGGGNVGAVLTQVVFFRGSRFKTETGITLMGVTIICCTLPMMFIYFPQWGGLFWGPSSKGITEENYYMSEWSKEEQEQGFHKASLKFANNSKGERGKRVASAPTPLEGTPE 511
++ N F+ PVDSEHKAT+ RI SV++PHMR+FHLSWISFF+CFVSTFAAPPL+P+IRDNLDLTSTDIGNAG+AAVSGAVFARI MGT CDLFGPR+AS+AL+L+T PAV+ +++ NS SFLLVRFFTGFSL+TFVSTQ+WMSSMFSA VVGTANG+A GWGNLGGGATQLIMP VF+LIH IGA +FTAWRIAFF+PA+FQ L+AY+VFFLGQD+PDGD+AKL KSG+KHKD V Y A+TNYRGWILALTYGYCFGVELTVDNIIAQYF+DRF+VNLHTAGIIAASFGLANLFSRP GG +SD+MA R+GMRGRLW L++VQ +GG LCVLLG++ SLS S+ VMLVFSVF QA+CGLT+GVVPFVSRRSLG+ISG+ GGGGNVGAVLTQV+FFRGS++ TETGIT MG+ IICCT+P++FIYFPQWGG+F+GPSSKG+TEE+YYM EW+ +E+E GFH+AS+KFA NS+ ERGK+V SAPTP++GTP
Sbjct: 4 ESKSVNTNFALPVDSEHKATEFRIYSVSSPHMRSFHLSWISFFSCFVSTFAAPPLLPIIRDNLDLTSTDIGNAGIAAVSGAVFARIAMGTACDLFGPRLASSALILITAPAVFLTSITNSALSFLLVRFFTGFSLATFVSTQFWMSSMFSANVVGTANGIAGGWGNLGGGATQLIMPLVFSLIHKIGANQFTAWRIAFFIPALFQALTAYAVFFLGQDMPDGDYAKLHKSGEKHKDNMRDVLYHAVTNYRGWILALTYGYCFGVELTVDNIIAQYFFDRFNVNLHTAGIIAASFGLANLFSRPGGGMLSDIMAKRFGMRGRLWV--------LWIVQTIGGLLCVLLGKVESLSGSIAVMLVFSVFCQAACGLTFGVVPFVSRRSLGIISGMTGGGGNVGAVLTQVIFFRGSKYSTETGITYMGIMIICCTIPILFIYFPQWGGMFYGPSSKGLTEEDYYMKEWNLKEKENGFHQASMKFAGNSRSERGKKVESAPTPIDGTPN 499
BLAST of XM_017378943.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2Z7B1D0 ((High affinity nitrate transporter 2.5-like {ECO:0000313|EMBL:KZV25489.1}))
HSP 1 Score: 772.696 bits (1994), Expect = 0.000e+0
Identity = 385/514 (74.90%), Postives = 452/514 (87.94%), Query Frame = 0
Match: A0A2Z7B1D0 ((High affinity nitrate transporter 2.5-like {ECO:0000313|EMBL:KZV25489.1}))
HSP 1 Score: 772.696 bits (1994), Expect = 0.000e+0
Identity = 385/514 (74.90%), Postives = 452/514 (87.94%), Query Frame = 0
Query: 1 MENSQTESNRENNGGFSSPVDSEHKATKLRIQSVAAPHMRAFHLSWISFFACFVSTFAAPPLIPLIRDNLDLTSTDIGNAGVAAVSGAVFARIVMGTLCDLFGPRVASAALMLLTTPAVYCSALANSPASFLLVRFFTGFSLSTFVSTQYWMSSMFSAPVVGTANGVAAGWGNLGGGATQLIMPYVFTLIH-HIGATKFTAWRIAFFVPAVFQTLSAYSVFFLGQDLPDGDFAKLQKSGDKHKDKFSQVFYQAITNYRGWILALTYGYCFGVELTVDNIIAQYFYDRFHVNLHTAGIIAASFGLANLFSRPLGGYVSDVMATRYGMRGRLWTSXXXXXXXLFLVQILGGCLCVLLGRLGSLSTSVTVMLVFSVFVQASCGLTYGVVPFVSRRSLGVISGLIGGGGNVGAVLTQVVFFRGSRFKTETGITLMGVTIICCTLPMMFIYFPQWGGLFWGPSSKGITEENYYMSEWSKEEQEQGFHKASLKFANNSKGERGKRVASAPTPLEGTPESY 513
ME S++E N F+ PVDSEHKAT+ R+ SVAAPHMRAFHLSW+SFFACFVSTFAAPPL+P+IRDNL+LT+TDIGNAG+AAVSGAVFARI MGT CDLFGPR+ASAAL L+T PAVYC+A+A+SP SFLLVRFFTGFSL+TFVSTQ+WMSS+FS VVGTANGVA GWGNLGGGATQLIMP VF LIH +IG+TKFTAWRIAFF+PA+FQTLSAY +FFLGQDLPDG++++L KSGDKHKD FS+V Y AITNYRGWILALTYGYCFGVELT+DNIIAQYFYDRF+VNLHTAGIIAASFGLAN+FSRP GG +SD+ A ++GMRGRLWT L+LVQ LGG C+ LG++GSL SV +ML+FSVFVQA+CGLT+GVVPFVSRRSLG++SG+ GGGGNVGAVLTQV+FFRGS++ TE G+ LMGV +ICCTL +M I+FPQWGG+F GPSSKG+TEE+YY+SEW+ E+E+GFHKAS+KF+ NS+ ERGK+V SAPTP + TP +Y
Sbjct: 1 MEISKSEYEYSNPKTFALPVDSEHKATEFRLFSVAAPHMRAFHLSWVSFFACFVSTFAAPPLLPIIRDNLNLTATDIGNAGIAAVSGAVFARIAMGTACDLFGPRLASAALTLITAPAVYCTAIASSPISFLLVRFFTGFSLATFVSTQFWMSSLFSGKVVGTANGVAGGWGNLGGGATQLIMPLVFDLIHKNIGSTKFTAWRIAFFIPALFQTLSAYGIFFLGQDLPDGNYSELHKSGDKHKDDFSKVVYHAITNYRGWILALTYGYCFGVELTIDNIIAQYFYDRFNVNLHTAGIIAASFGLANIFSRPGGGMLSDLTAKKFGMRGRLWT--------LWLVQTLGGIFCIFLGKVGSLGLSVAIMLIFSVFVQAACGLTFGVVPFVSRRSLGIVSGMTGGGGNVGAVLTQVIFFRGSQYTTEKGLELMGVMMICCTLVIMLIHFPQWGGMFCGPSSKGVTEEDYYISEWTSAEREKGFHKASMKFSENSRSERGKKVDSAPTPADRTPNTY 506
BLAST of XM_017378943.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061E862 ((Nitrate transporter2.5 {ECO:0000313|EMBL:EOY00557.1}))
HSP 1 Score: 767.689 bits (1981), Expect = 0.000e+0
Identity = 374/509 (73.48%), Postives = 443/509 (87.03%), Query Frame = 0
Match: A0A061E862 ((Nitrate transporter2.5 {ECO:0000313|EMBL:EOY00557.1}))
HSP 1 Score: 767.689 bits (1981), Expect = 0.000e+0
Identity = 374/509 (73.48%), Postives = 443/509 (87.03%), Query Frame = 0
Query: 1 MENSQTESNRENNGGFSSPVDSEHKATKLRIQSVAAPHMRAFHLSWISFFACFVSTFAAPPLIPLIRDNLDLTSTDIGNAGVAAVSGAVFARIVMGTLCDLFGPRVASAALMLLTTPAVYCSALANSPASFLLVRFFTGFSLSTFVSTQYWMSSMFSAPVVGTANGVAAGWGNLGGGATQLIMPYVFTLIHHIGATKFTAWRIAFFVPAVFQTLSAYSVFFLGQDLPDGDFAKLQKSGDKHKDKFSQVFYQAITNYRGWILALTYGYCFGVELTVDNIIAQYFYDRFHVNLHTAGIIAASFGLANLFSRPLGGYVSDVMATRYGMRGRLWTSXXXXXXXLFLVQILGGCLCVLLGRLGSLSTSVTVMLVFSVFVQASCGLTYGVVPFVSRRSLGVISGLIGGGGNVGAVLTQVVFFRGSRFKTETGITLMGVTIICCTLPMMFIYFPQWGGLFWGPSSKGI-TEENYYMSEWSKEEQEQGFHKASLKFANNSKGERGKRVASAPTPLEG 508
ME S T + + F+ PVDSEHKAT+ R+ SVAAPHMRAFHLSWISFFACFVSTFAAPPL+P+IRDNL+LT+TDIGNAGVA+VSGAVFARI MGT CDLFGPR+ASA+L+LLT PAVY +++A+SP SFLLVRFFTGFSL+TFVSTQ+WMSSMFS PVVGTANGVAAGWGNLGGGATQLIMP VF++I IGA KFTAWRIAFF+PA+FQTL+A+++ GQDLPDG++ +LQKSG K KDKFS+VFY ITNYRGWILALTYGYCFGVELTVDNIIA+YFYDRF++ LHTAGIIAASFGLANLFSRP GG +SD MA+R+GMRGRLW L+++Q LGG C++LG++GSLS S+ VM++FSVFVQA+CGLT+GVVPFVSRRSLGV+SG+ GGGGNVGA+LTQ++FF+GS++ ETGITLMGV I+CCTLP+ IYFPQWGG+F GPSS+ I TEE+YY+SEWS E+E+G H+ASLKFA+NS+ ERG+RV SA P G
Sbjct: 1 MEISSTITETQPQK-FALPVDSEHKATEFRLFSVAAPHMRAFHLSWISFFACFVSTFAAPPLLPIIRDNLNLTATDIGNAGVASVSGAVFARIAMGTACDLFGPRLASASLILLTAPAVYFTSIASSPVSFLLVRFFTGFSLATFVSTQFWMSSMFSTPVVGTANGVAAGWGNLGGGATQLIMPLVFSVIRDIGAVKFTAWRIAFFIPALFQTLAAFAILIFGQDLPDGNYQRLQKSGTKQKDKFSRVFYHGITNYRGWILALTYGYCFGVELTVDNIIAEYFYDRFNLKLHTAGIIAASFGLANLFSRPAGGIISDRMASRFGMRGRLWA--------LWIIQTLGGVFCIILGQVGSLSASIIVMIIFSVFVQAACGLTFGVVPFVSRRSLGVVSGMTGGGGNVGAILTQLIFFKGSKYSKETGITLMGVMIVCCTLPIFLIYFPQWGGMFCGPSSEKIATEEDYYLSEWSSNEKEKGLHQASLKFADNSRSERGRRVHSAAMPSNG 500
BLAST of XM_017378943.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9HBL0 ((Permease of the major facilitator superfamily {ECO:0000313|EMBL:PIN14912.1}))
HSP 1 Score: 767.303 bits (1980), Expect = 0.000e+0
Identity = 389/499 (77.96%), Postives = 442/499 (88.58%), Query Frame = 0
Match: A0A2G9HBL0 ((Permease of the major facilitator superfamily {ECO:0000313|EMBL:PIN14912.1}))
HSP 1 Score: 767.303 bits (1980), Expect = 0.000e+0
Identity = 389/499 (77.96%), Postives = 442/499 (88.58%), Query Frame = 0
Query: 16 FSSPVDSEHKATKLRIQSVAAPHMRAFHLSWISFFACFVSTFAAPPLIPLIRDNLDLTSTDIGNAGVAAVSGAVFARIVMGTLCDLFGPRVASAALMLLTTPAVYCSALANSPASFLLVRFFTGFSLSTFVSTQYWMSSMFSAPVVGTANGVAAGWGNLGGGATQLIMPYVFTLIHHIGATKFTAWRIAFFVPAVFQTLSAYSVFFLGQDLPDGDFAKLQKSGDKHKDKFSQVFYQAITNYRGWILALTYGYCFGVELTVDNIIAQYFYDRFHVNLHTAGIIAASFGLANLFSRPLGGYVSDVMATRYGMRGRLWTSXXXXXXXLFLVQILGGCLCVLLGRLGSLSTSVTVMLVFSVFVQASCGLTYGVVPFVSRRSLGVISGLIGGGGNVGAVLTQVVFFRGSRFKTETGITLMGVTIICCTLPMMFIYFPQWGGLFWGPSSKGITEENYYMSEWSKEEQEQGFHKASLKFANNSKGERGKR-VASAPTPLEGTPESY 513
F+ PVDSEHKAT+ R+ S AAPHMRAFHLSWISFFACFVSTFAAPPL+P+IRD+LDLT+TDIGNAG+AAVSGAVFARI MGT CDLFGPR+AS+AL LLT PAVYC++++NSP SFLLVRFFTGFSL+TFVSTQ+WMSS+FS VVGTANG+A GWGNLGGGATQLIMP VF LIHHIGATKFTAWRIAFF+PA FQTLSAY +FFLGQDLPDG++++L KSGDKHKD FSQVFY AITNYRGWILALTYGYCFGVELT+DNIIAQYFYDRF+VNLHTAGIIAASFGLANLFSRP GG +SD MA R+GMRGRLWT L++VQ LGG C+LLG++GSL SV VMLVFSVFVQA+CGLT+GVVPFVSRRSLG+ISG+ GGGGNVGAVLTQV+FFRGSR+ TETGITLMG+ I+CC L + I+FPQWGG+F GPSSKG TEE+YYMSEW+ E+EQGFHKASLKF+ NS+ ERG+ + SAPTP + TP +
Sbjct: 15 FALPVDSEHKATEFRLFSFAAPHMRAFHLSWISFFACFVSTFAAPPLLPIIRDDLDLTATDIGNAGIAAVSGAVFARIAMGTACDLFGPRLASSALTLLTAPAVYCTSISNSPVSFLLVRFFTGFSLATFVSTQFWMSSLFSGRVVGTANGLAGGWGNLGGGATQLIMPLVFDLIHHIGATKFTAWRIAFFIPAFFQTLSAYGIFFLGQDLPDGNYSQLHKSGDKHKDNFSQVFYHAITNYRGWILALTYGYCFGVELTIDNIIAQYFYDRFNVNLHTAGIIAASFGLANLFSRPGGGMLSDFMANRFGMRGRLWT--------LWIVQTLGGVFCILLGKVGSLGVSVAVMLVFSVFVQAACGLTFGVVPFVSRRSLGIISGMTGGGGNVGAVLTQVIFFRGSRYSTETGITLMGIMILCCALLIALIHFPQWGGMFCGPSSKGTTEEDYYMSEWTSSEKEQGFHKASLKFSENSRSERGREIIRSAPTPTDRTPNMH 505
BLAST of XM_017378943.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4D9BPH7 ((MFS transporter, NNP family, nitrate/nitrite transporter {ECO:0000313|EMBL:TEY87079.1}))
HSP 1 Score: 766.918 bits (1979), Expect = 0.000e+0
Identity = 386/513 (75.24%), Postives = 443/513 (86.35%), Query Frame = 0
Match: A0A4D9BPH7 ((MFS transporter, NNP family, nitrate/nitrite transporter {ECO:0000313|EMBL:TEY87079.1}))
HSP 1 Score: 766.918 bits (1979), Expect = 0.000e+0
Identity = 386/513 (75.24%), Postives = 443/513 (86.35%), Query Frame = 0
Query: 1 MENSQTESNRENNGGFSSPVDSEHKATKLRIQSVAAPHMRAFHLSWISFFACFVSTFAAPPLIPLIRDNLDLTSTDIGNAGVAAVSGAVFARIVMGTLCDLFGPRVASAALMLLTTPAVYCSALANSPASFLLVRFFTGFSLSTFVSTQYWMSSMFSAPVVGTANGVAAGWGNLGGGATQLIMPYVFTLIHHIGATKFTAWRIAFFVPAVFQTLSAYSVFFLGQDLPDGDFAKLQKSGDKHKDKFSQVFYQAITNYRGWILALTYGYCFGVELTVDNIIAQYFYDRFHVNLHTAGIIAASFGLANLFSRPLGGYVSDVMATRYGMRGRLWTSXXXXXXXLFLVQILGGCLCVLLGRLGSLSTSVTVMLVFSVFVQASCGLTYGVVPFVSRRSLGVISGLIGGGGNVGAVLTQVVFFRGSRFKTETGITLMGVTIICCTLPMMFIYFPQWGGLFWGPSSKGITEENYYMSEWSKEEQEQGFHKASLKFANNSKGERGKRVASAPTPLEGTPESY 513
+ N E+ ++ F+ PVDSEHK+T+ R+ SVAAPHMRAFHLSWISFFACFVS+FAAPPL+P+IRDNL LT+TDIGNAG+AAVSGAVFARI MGT CDLFGPR+ASAAL LLT PAVYC+A+ANSP SFLLVRFFTGFSL+TFVSTQ+WMSS+FS+ VVGTANGVA GWGNLGGGATQLIMP VF LI IGAT+FTAWRIAFFVP +FQTLSAY +FFLGQDLPDG++++L KSGDKHKD F +V Y A+TNYRGWILALTYGYCFGVELT+DNIIAQYFYDRF+V LHTAGIIAASFG+ANLFSRP GG +SD++A RYGMRGRLWT L++VQ LGG C+LLG++GSL SV VML+FSVFVQA+CGLT+GV PFVSRRSLG ISG+ GGGGNVGAVLTQV+FFRGS + TETGITLMGV I+CCTL +M I+FPQWGG+F GPSSKG TEE+YY+SEW+ EQ+QGFH ASLKF+ NS+ ERGKRV APTP TP +Y
Sbjct: 3 VSNGAEETYQKK---FALPVDSEHKSTEFRLFSVAAPHMRAFHLSWISFFACFVSSFAAPPLLPVIRDNLGLTATDIGNAGIAAVSGAVFARIAMGTACDLFGPRLASAALTLLTAPAVYCTAIANSPTSFLLVRFFTGFSLATFVSTQFWMSSLFSSKVVGTANGVAGGWGNLGGGATQLIMPLVFNLIERIGATQFTAWRIAFFVPGLFQTLSAYGIFFLGQDLPDGNYSQLHKSGDKHKDSFKKVLYHAVTNYRGWILALTYGYCFGVELTIDNIIAQYFYDRFNVRLHTAGIIAASFGIANLFSRPGGGILSDIVANRYGMRGRLWT--------LWIVQTLGGVFCILLGKVGSLGVSVAVMLIFSVFVQAACGLTFGVAPFVSRRSLGFISGMTGGGGNVGAVLTQVIFFRGSHYTTETGITLMGVMIVCCTLVIMLIHFPQWGGMFCGPSSKGATEEDYYLSEWTAAEQDQGFHTASLKFSENSRNERGKRVQPAPTPTLATPNAY 504
BLAST of XM_017378943.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1B2N7 ((high affinity nitrate transporter 2.5-like {ECO:0000313|RefSeq:XP_021292884.1}))
HSP 1 Score: 766.148 bits (1977), Expect = 0.000e+0
Identity = 375/513 (73.10%), Postives = 445/513 (86.74%), Query Frame = 0
Match: A0A6J1B2N7 ((high affinity nitrate transporter 2.5-like {ECO:0000313|RefSeq:XP_021292884.1}))
HSP 1 Score: 766.148 bits (1977), Expect = 0.000e+0
Identity = 375/513 (73.10%), Postives = 445/513 (86.74%), Query Frame = 0
Query: 1 MENSQTESNRENNGGFSSPVDSEHKATKLRIQSVAAPHMRAFHLSWISFFACFVSTFAAPPLIPLIRDNLDLTSTDIGNAGVAAVSGAVFARIVMGTLCDLFGPRVASAALMLLTTPAVYCSALANSPASFLLVRFFTGFSLSTFVSTQYWMSSMFSAPVVGTANGVAAGWGNLGGGATQLIMPYVFTLIHHIGATKFTAWRIAFFVPAVFQTLSAYSVFFLGQDLPDGDFAKLQKSGDKHKDKFSQVFYQAITNYRGWILALTYGYCFGVELTVDNIIAQYFYDRFHVNLHTAGIIAASFGLANLFSRPLGGYVSDVMATRYGMRGRLWTSXXXXXXXLFLVQILGGCLCVLLGRLGSLSTSVTVMLVFSVFVQASCGLTYGVVPFVSRRSLGVISGLIGGGGNVGAVLTQVVFFRGSRFKTETGITLMGVTIICCTLPMMFIYFPQWGGLFWGPSSKGI-TEENYYMSEWSKEEQEQGFHKASLKFANNSKGERGKRVASAPTPLEGTPES 512
ME S T + + ++ PVDSEHKAT+ R+ SVA PHMRAFHLSWISFFACFVSTFAAPPL+P+IRDNL+LT+TDIGNAGVA+VSGAVFARI MGT CDLFGPR+ASA+L+LLT PAVY ++ A+SP SFLLVRFFTGFSL+TFVSTQ+WMSSMFSAPVVGTANGVAAGWGNLGGGATQLIMP VF++I IGA KFTAWRIAFF+PA+FQTL+A+++ GQDLPDG++ +LQKSG K KDKFS+VFY ITNYRGWILALTYGYCFGVELTVDNIIA+YFYDRF++ L TAGIIAASFGLANLFSRP GG++SD+MA R+GMRGRLW L+++Q LGG C++LG++GSLS S+TVM++FSVFVQA+CGLT+GVVPFVSRRSLGVISG+ GGGGNVGAVLTQ++FF+GS++ ETGITLMGV I+CCTL + IYFPQWGG+F GPSS+ I TEE+YY+SEWS +E+E+G H+ASLKFA+NS+ ERG+ V SA P GTP +
Sbjct: 1 MEISSTITETQPQK-YALPVDSEHKATEFRLFSVAPPHMRAFHLSWISFFACFVSTFAAPPLLPIIRDNLNLTATDIGNAGVASVSGAVFARIAMGTACDLFGPRLASASLILLTAPAVYFTSFASSPVSFLLVRFFTGFSLATFVSTQFWMSSMFSAPVVGTANGVAAGWGNLGGGATQLIMPLVFSVIRDIGAVKFTAWRIAFFIPALFQTLAAFAILIFGQDLPDGNYQRLQKSGTKQKDKFSRVFYHGITNYRGWILALTYGYCFGVELTVDNIIAEYFYDRFNLKLRTAGIIAASFGLANLFSRPAGGFISDMMARRFGMRGRLWA--------LWIIQTLGGVFCIILGQVGSLSASITVMIIFSVFVQAACGLTFGVVPFVSRRSLGVISGMTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIVCCTLAIFLIYFPQWGGMFCGPSSEKIATEEDYYLSEWSSKEKEKGLHQASLKFADNSRSERGRGVHSAAMPSNGTPPT 504
| Match Name | Stats | Description |
|---|---|---|
| A0A6I9SMF4 | E-Value: 0.000e+0, PID: 77.00 | (high affinity nitrate transporter 2.5 {ECO:000031... [more] |
| A0A2R6RER8 | E-Value: 0.000e+0, PID: 75.49 | (High affinity nitrate transporter 2.5 like {ECO:0... [more] |
| A0A200RAX8 | E-Value: 0.000e+0, PID: 73.52 | (Major facilitator superfamily {ECO:0000313|EMBL:O... [more] |
| A0A1S4AE09 | E-Value: 0.000e+0, PID: 75.34 | (high affinity nitrate transporter 2.5-like {ECO:0... [more] |
| M1BF74 | E-Value: 0.000e+0, PID: 75.40 | (Nitrate transporter {ECO:0000313|EnsemblPlants:PG... [more] |
| A0A2Z7B1D0 | E-Value: 0.000e+0, PID: 74.90 | (High affinity nitrate transporter 2.5-like {ECO:0... [more] |
| A0A061E862 | E-Value: 0.000e+0, PID: 73.48 | (Nitrate transporter2.5 {ECO:0000313|EMBL:EOY00557... [more] |
| A0A2G9HBL0 | E-Value: 0.000e+0, PID: 77.96 | (Permease of the major facilitator superfamily {EC... [more] |
| A0A4D9BPH7 | E-Value: 0.000e+0, PID: 75.24 | (MFS transporter, NNP family, nitrate/nitrite tran... [more] |
| A0A6J1B2N7 | E-Value: 0.000e+0, PID: 73.10 | (high affinity nitrate transporter 2.5-like {ECO:0... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |