XM_017378968.1

Resource Type: 
Polypeptide
Name: 
XM_017378968.1
Identifier: 
XM_017378968.1-protein
Sequence: 
MAARRISSLVTHQRSFSPSIALLSSGRLCHRISQYSTSTIEEPVKPPVEV
NYSKLLIDGQFVDAVSGKTFPTIDPRTGEVIAHVAEGDKEDIDIAVAAAR
KAFSKGPWPKMIAYDRSNILLRFADLLEKHNDEIAALESWDTGKPFKQSA
LVEVPMLTRFFRYYAGWADKIQGLTVPVDGSYHCQTLHEPIGVCGQIIPW
NFPLLMYGWKVAPALACGNTVVMKTAEQTPLSALYVSNLLLEAGLPPGVL
NIVSGHGNGAGAALCLHMDVDKLAFTGSTETGKKVLAASADSNLKAVTLE
LGGKSPFIVCEDANIDEAVELAHEALFFNMGQCCCAGSRTYVHERVYDEF
VEKAKARAQNRVVGDPFRDGTEQGPQIDSAQYEKILYYIRSGIDCGAKLE
TGGDKIGEKGFYLKPTVFSNVQDDMMIAQDEIFGPVQSILKFKTLDEVIE
RANATRYGLAAGVFTRSLETANTMMRALRAGTVWINCYDTFDAAIPFGGY
KMSGLGREKGVYGLNNYLQVKAVVMPVKNPAWL
Sequence Length: 
533
Sequence Checksum: 
f7882efcbae158e667e585723baa6f7b
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017378968.1, derives from mRNA, XM_017378968.1.
Loading content
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017378968.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017378968.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6V602 ((aldehyde dehydrogenase family 2 member B7, mitochondrial-like {ECO:0000313|RefSeq:XP_027098145.1}))

HSP 1 Score: 867.84 bits (2241), Expect = 0.000e+0
Identity = 413/538 (76.77%), Postives = 466/538 (86.62%), Query Frame = 0
 
Query:    1 MAARRISSLVTHQRSFSPSIA-LLSSGR---LCHRISQYSTST-IEEPVKPPVEVNYSKLLIDGQFVDAVSGKTFPTIDPRTGEVIAHVAEGDKEDIDIAVAAARKAFSKGPWPKMIAYDRSNILLRFADLLEKHNDEIAALESWDTGKPFKQSALVEVPMLTRFFRYYAGWADKIQGLTVPVDGSYHCQTLHEPIGVCGQIIPWNFPLLMYGWKVAPALACGNTVVMKTAEQTPLSALYVSNLLLEAGLPPGVLNIVSGHGNGAGAALCLHMDVDKLAFTGSTETGKKVLAASADSNLKAVTLELGGKSPFIVCEDANIDEAVELAHEALFFNMGQCCCAGSRTYVHERVYDEFVEKAKARAQNRVVGDPFRDGTEQGPQIDSAQYEKILYYIRSGIDCGAKLETGGDKIGEKGFYLKPTVFSNVQDDMMIAQDEIFGPVQSILKFKTLDEVIERANATRYGLAAGVFTRSLETANTMMRALRAGTVWINCYDTFDAAIPFGGYKMSGLGREKGVYGLNNYLQVKAVVMPVKNPAWL 533
            MAA+R+SSL+   RSF+ S+A  L+ G+       IS+YST+  +EEP+KPPV V Y+KLLI+GQFVDA SGKTFPT+DPRTGEVIAHVAEGD ED++ AVAAARKAF +GPWP++ AYDR  ILLRFADL+EKHNDEIAALE+WD GKP++Q+A +EVPM  R  RYYAGWADKI G+TVP DG YH QTLHEPIGV GQIIPWNFPLLMY WKV PALACGNTVV+KTAEQTPLSALYV+ LL EAGLP GVLN+VSG G  AGAALC HMDVDKLAFTGSTETGK +L  SA SNLK VTLELGGKSPFIVCEDA++D AVELAH ALFFN GQCCCAGSRTYVHERVYDEFVEKA ARA  R VGDPFR   EQGPQ+DS Q+EKIL YIR+G+D GA LETGGD++GEKG+Y+KPTVFSNVQDDM+IA++EIFGPVQ+ILK+K LDEV  RAN++RYGLAAGVFT++L+TANT+MRALRAGTVWINC+DTFDAAIPFGGYKMSG GREKG Y L NYLQVKAVV P+KNPAWL
Sbjct:    1 MAAKRVSSLLL-SRSFTSSLASRLTGGKSACQARAISRYSTAAALEEPIKPPVNVEYTKLLINGQFVDAASGKTFPTLDPRTGEVIAHVAEGDAEDVNRAVAAARKAFDEGPWPRLTAYDRQRILLRFADLVEKHNDEIAALETWDNGKPYEQAAKIEVPMFVRLMRYYAGWADKIHGMTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMYAWKVGPALACGNTVVLKTAEQTPLSALYVTKLLHEAGLPSGVLNVVSGFGPTAGAALCSHMDVDKLAFTGSTETGKIILELSARSNLKPVTLELGGKSPFIVCEDADVDNAVELAHFALFFNQGQCCCAGSRTYVHERVYDEFVEKATARALKRSVGDPFRQEIEQGPQVDSEQFEKILRYIRAGVDSGATLETGGDRLGEKGYYIKPTVFSNVQDDMLIAKEEIFGPVQTILKYKDLDEVTRRANSSRYGLAAGVFTQNLDTANTLMRALRAGTVWINCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVTPLKNPAWL 537    
BLAST of XM_017378968.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5S8F3 ((aldehyde dehydrogenase family 2 member B7, mitochondrial {ECO:0000313|RefSeq:XP_021809761.1}))

HSP 1 Score: 858.981 bits (2218), Expect = 0.000e+0
Identity = 407/537 (75.79%), Postives = 472/537 (87.90%), Query Frame = 0
 
Query:    1 MAARRISSLVTHQRSFSPSIALLSSGR---LCHRISQYST-STIEEPVKPPVEVNYSKLLIDGQFVDAVSGKTFPTIDPRTGEVIAHVAEGDKEDIDIAVAAARKAFSKGPWPKMIAYDRSNILLRFADLLEKHNDEIAALESWDTGKPFKQSALVEVPMLTRFFRYYAGWADKIQGLTVPVDGSYHCQTLHEPIGVCGQIIPWNFPLLMYGWKVAPALACGNTVVMKTAEQTPLSALYVSNLLLEAGLPPGVLNIVSGHGNGAGAALCLHMDVDKLAFTGSTETGKKVLAASADSNLKAVTLELGGKSPFIVCEDANIDEAVELAHEALFFNMGQCCCAGSRTYVHERVYDEFVEKAKARAQNRVVGDPFRDGTEQGPQIDSAQYEKILYYIRSGIDCGAKLETGGDKIGEKGFYLKPTVFSNVQDDMMIAQDEIFGPVQSILKFKTLDEVIERANATRYGLAAGVFTRSLETANTMMRALRAGTVWINCYDTFDAAIPFGGYKMSGLGREKGVYGLNNYLQVKAVVMPVKNPAWL 533
            MA+RR+SS+++  RSF+ S +L S+GR   +   I +YST ++IE P+ P V+VNY++LLI+GQFVDA SGKTFPT+DPRTG VIAHVAEGD EDI+ AV+AARKAF +GPWPKM AY+RS +L RFADL+EKHNDEIAALE+WD GKPF+Q+A +EVPML RFFRYYAG+ADKI GLTVP DG YH QTLHEPIGV GQIIPWNFPLLM+ WKVAPALACGNTVV+KTAE TPLSALYV+ LL EAGLPPGVLN+VSG G  AGAALC HM+VDK+AFTGST+TGKKVL  +A SNLK VTLELGGKSPFIVCEDA++D+AVELAH A+FFN GQCCC+GSRT+VHERVYDEF+EKAKARA+ R+VGDPF++G EQGPQIDS Q++KIL YI  GI  GA LETGG ++G KGFY+KPTVFSNV+DDM IAQDEIFGPVQSILK+K LDEVI RANATRYGLAAGVFT++++TANT+ RALR G+VWINC+D FDAAIPFGGYKMSG GREKG+YGL+NYLQVKAVV P+KNPAWL
Sbjct:    1 MASRRVSSVLS--RSFT-SASLFSAGRSSSVARGIGKYSTDASIEAPIIPSVKVNYTQLLINGQFVDAASGKTFPTLDPRTGNVIAHVAEGDSEDINRAVSAARKAFDEGPWPKMTAYERSRVLFRFADLVEKHNDEIAALETWDNGKPFEQAAKIEVPMLVRFFRYYAGFADKIHGLTVPADGEYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVAPALACGNTVVLKTAELTPLSALYVATLLQEAGLPPGVLNVVSGFGPTAGAALCSHMEVDKVAFTGSTDTGKKVLELAAKSNLKIVTLELGGKSPFIVCEDADVDKAVELAHFAVFFNTGQCCCSGSRTFVHERVYDEFIEKAKARAEKRIVGDPFKEGVEQGPQIDSDQFQKILKYIDYGIKSGATLETGGGRLGTKGFYIKPTVFSNVKDDMPIAQDEIFGPVQSILKYKDLDEVIRRANATRYGLAAGVFTQNIDTANTLTRALRVGSVWINCFDIFDAAIPFGGYKMSGHGREKGIYGLSNYLQVKAVVTPLKNPAWL 534    
BLAST of XM_017378968.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M5XAM9 (Aldedh domain-containing protein {ECO:0000259|Pfam:PF00171})

HSP 1 Score: 858.596 bits (2217), Expect = 0.000e+0
Identity = 405/537 (75.42%), Postives = 469/537 (87.34%), Query Frame = 0
 
Query:    1 MAARRISSLVTHQRSFSPSIALLSSGR---LCHRISQYST-STIEEPVKPPVEVNYSKLLIDGQFVDAVSGKTFPTIDPRTGEVIAHVAEGDKEDIDIAVAAARKAFSKGPWPKMIAYDRSNILLRFADLLEKHNDEIAALESWDTGKPFKQSALVEVPMLTRFFRYYAGWADKIQGLTVPVDGSYHCQTLHEPIGVCGQIIPWNFPLLMYGWKVAPALACGNTVVMKTAEQTPLSALYVSNLLLEAGLPPGVLNIVSGHGNGAGAALCLHMDVDKLAFTGSTETGKKVLAASADSNLKAVTLELGGKSPFIVCEDANIDEAVELAHEALFFNMGQCCCAGSRTYVHERVYDEFVEKAKARAQNRVVGDPFRDGTEQGPQIDSAQYEKILYYIRSGIDCGAKLETGGDKIGEKGFYLKPTVFSNVQDDMMIAQDEIFGPVQSILKFKTLDEVIERANATRYGLAAGVFTRSLETANTMMRALRAGTVWINCYDTFDAAIPFGGYKMSGLGREKGVYGLNNYLQVKAVVMPVKNPAWL 533
            MA+RR+SS+++  RSF+ S +L S+GR   +   I +YST ++ E P+ P V+VNY++LLI+GQFVDA SGKTFPT+DPRTG VIAHVAEGD EDI+ AV+AARKAF +GPWPKM AY+RS +L RFADL+EKHNDEIA LE+WD GKPF+Q+A  EVPM+ RFFRYYAG+ADKI GLTVP DG YH QTLHEPIGV GQIIPWNFPLLM+ WKVAPALACGNTVV+KTAEQTPLSALYV+ LL EAGLPPGVLN+VSG G  AGAALC HM+VDK+AFTGST+TGKKVL  +A SNLK VTLELGGKSPFIVCEDA++D+AVELAH ALFFNMGQCCC+GSRT+VHERVYDEF+EKA+ARA+ R+VGDPF+ G EQGPQIDS Q+EKIL YI  GI  GA LETGG ++G KGFY+KPTVFSNV+DDM IAQDEIFGPVQSILK+K LDEVI RAN TRYGLAAGVFT++++TANT+ RALR G+VWINC+D FDAAIPFGGYKMSG GREKG+YGL+NYLQVKA+V P+KNPAWL
Sbjct:    1 MASRRVSSVLS--RSFT-SASLFSAGRSSSVARGIGKYSTDASFEAPIIPSVKVNYTRLLINGQFVDAASGKTFPTLDPRTGNVIAHVAEGDSEDINRAVSAARKAFDEGPWPKMTAYERSRVLFRFADLVEKHNDEIATLETWDNGKPFEQAAKTEVPMIVRFFRYYAGFADKIHGLTVPADGEYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVAPALACGNTVVLKTAEQTPLSALYVATLLQEAGLPPGVLNVVSGFGPTAGAALCSHMEVDKVAFTGSTDTGKKVLELAAKSNLKTVTLELGGKSPFIVCEDADVDKAVELAHFALFFNMGQCCCSGSRTFVHERVYDEFIEKARARAEKRIVGDPFKGGVEQGPQIDSDQFEKILRYIDYGIKSGATLETGGGRLGTKGFYIKPTVFSNVKDDMPIAQDEIFGPVQSILKYKDLDEVIRRANTTRYGLAAGVFTQNIDTANTLTRALRVGSVWINCFDVFDAAIPFGGYKMSGHGREKGIYGLSNYLQVKAIVTPLKNPAWL 534    
BLAST of XM_017378968.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314UVY1 ((Aldehyde dehydrogenase family 2 member B7 mitochondrial {ECO:0000313|EMBL:PQM40956.1}))

HSP 1 Score: 857.825 bits (2215), Expect = 0.000e+0
Identity = 407/537 (75.79%), Postives = 470/537 (87.52%), Query Frame = 0
 
Query:    1 MAARRISSLVTHQRSFSPSIALLSSGR---LCHRISQYST-STIEEPVKPPVEVNYSKLLIDGQFVDAVSGKTFPTIDPRTGEVIAHVAEGDKEDIDIAVAAARKAFSKGPWPKMIAYDRSNILLRFADLLEKHNDEIAALESWDTGKPFKQSALVEVPMLTRFFRYYAGWADKIQGLTVPVDGSYHCQTLHEPIGVCGQIIPWNFPLLMYGWKVAPALACGNTVVMKTAEQTPLSALYVSNLLLEAGLPPGVLNIVSGHGNGAGAALCLHMDVDKLAFTGSTETGKKVLAASADSNLKAVTLELGGKSPFIVCEDANIDEAVELAHEALFFNMGQCCCAGSRTYVHERVYDEFVEKAKARAQNRVVGDPFRDGTEQGPQIDSAQYEKILYYIRSGIDCGAKLETGGDKIGEKGFYLKPTVFSNVQDDMMIAQDEIFGPVQSILKFKTLDEVIERANATRYGLAAGVFTRSLETANTMMRALRAGTVWINCYDTFDAAIPFGGYKMSGLGREKGVYGLNNYLQVKAVVMPVKNPAWL 533
            MA+RR+SS+++  RSF+ S +L S+GR   +   I +YST ++IEEP+ P V+VNY++LLI+GQFVDA SGKTFPT+DPRTG VIAHVAEGD EDI+ AV+AARKAF +GPWPKM AY+RS +L RFADL+EKHNDEIA+LE+WD GKPF+Q+A  EVPML RFFRYYAG+ADKI GLTVP DG YH QTLHEPIGV GQIIPWNFPLLM+ WKVAPALACGNTVV+KTAE TPLSALYV+ LL EAGLPPGVLN+VSG G  AGAALC HM+VDK+AFTGST+TGKKVL  +A SNLK VTLELGGKSPFIVCEDA++D+AVELAH A+FFN GQCCC+GSRT+VHERVYDEF+EKAKARA+ R+VGDPF+ G EQGPQIDS Q++KIL YI  GI  GA LETGG ++G KGFY+KPTVFSNVQDDM IAQDEIFGPVQSILK+K LDEVI RAN TRYGLAAGVFT++++TANT+ RALR G+VWINC+D FDAAIPFGGYKMSG GREKG+YGL+NYLQVKAVV P+KNPAWL
Sbjct:    1 MASRRVSSVLS--RSFT-SASLFSAGRSSSVARGIGKYSTDASIEEPIIPSVKVNYTQLLINGQFVDAASGKTFPTLDPRTGNVIAHVAEGDSEDINRAVSAARKAFDEGPWPKMTAYERSRVLFRFADLVEKHNDEIASLETWDNGKPFEQAAKTEVPMLVRFFRYYAGFADKIHGLTVPADGEYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVAPALACGNTVVLKTAELTPLSALYVATLLQEAGLPPGVLNVVSGFGPTAGAALCSHMEVDKVAFTGSTDTGKKVLELAAKSNLKIVTLELGGKSPFIVCEDADVDKAVELAHFAVFFNTGQCCCSGSRTFVHERVYDEFIEKAKARAEKRIVGDPFKGGVEQGPQIDSDQFQKILKYIDYGIKSGATLETGGGRLGTKGFYIKPTVFSNVQDDMPIAQDEIFGPVQSILKYKDLDEVIRRANTTRYGLAAGVFTQNIDTANTLTRALRVGSVWINCFDIFDAAIPFGGYKMSGHGREKGIYGLSNYLQVKAVVTPLKNPAWL 534    
BLAST of XM_017378968.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4Y1QQG3 ((Aldehyde dehydrogenase 2B4 {ECO:0000313|EMBL:BBG94092.1}) (Full=PREDICTED: aldehyde {ECO:0000313|EMBL:VVA13451.1}))

HSP 1 Score: 857.055 bits (2213), Expect = 0.000e+0
Identity = 406/537 (75.61%), Postives = 469/537 (87.34%), Query Frame = 0
 
Query:    1 MAARRISSLVTHQRSFSPSIALLSSGR---LCHRISQYST-STIEEPVKPPVEVNYSKLLIDGQFVDAVSGKTFPTIDPRTGEVIAHVAEGDKEDIDIAVAAARKAFSKGPWPKMIAYDRSNILLRFADLLEKHNDEIAALESWDTGKPFKQSALVEVPMLTRFFRYYAGWADKIQGLTVPVDGSYHCQTLHEPIGVCGQIIPWNFPLLMYGWKVAPALACGNTVVMKTAEQTPLSALYVSNLLLEAGLPPGVLNIVSGHGNGAGAALCLHMDVDKLAFTGSTETGKKVLAASADSNLKAVTLELGGKSPFIVCEDANIDEAVELAHEALFFNMGQCCCAGSRTYVHERVYDEFVEKAKARAQNRVVGDPFRDGTEQGPQIDSAQYEKILYYIRSGIDCGAKLETGGDKIGEKGFYLKPTVFSNVQDDMMIAQDEIFGPVQSILKFKTLDEVIERANATRYGLAAGVFTRSLETANTMMRALRAGTVWINCYDTFDAAIPFGGYKMSGLGREKGVYGLNNYLQVKAVVMPVKNPAWL 533
            MA+RR+SS+++  RSF+ S +L S+GR   +   I +YST ++ E P+ P V+VNY++LLI+GQFVDA SGKTFPT+DPRTG VIAHVAEGD EDI+ AV+AARKAF +GPWPKM AY+RS +L RFADL+EKHNDEIA LE+WD GKPF+Q+A  EVPM+ RFFRYYAG+ADKI GLTVP DG YH QTLHEPIGV GQIIPWNFPLLM+ WKVAPALACGNTVV+KTAEQTPLSALYV+ LL EAGLPPGVLN+VSG G  AGAALC HM+VDK+AFTGST+TGKKVL  +A SNLK VTLELGGKSPFIVCEDA++D+AVELAH ALFFNMGQCCC+GSRT+VHERVYDEF+EKAKARA+ R+VGDPF+ G EQGPQIDS Q+EKIL YI  GI  GA LETGG ++G KGFY+KPTVFSNV+DDM IAQDEIFGPVQSILK+K LDEVI RAN+TRYGLAAGVFT++++TANT+ RALR G+VWINC+D FDAAIPFGGYKMSG GREKG+YGL+NYLQVKAVV  +KNPAWL
Sbjct:    1 MASRRVSSVLS--RSFT-SASLFSAGRSSSVARGIGKYSTDASFEAPIIPSVKVNYTRLLINGQFVDAASGKTFPTLDPRTGNVIAHVAEGDSEDINRAVSAARKAFDEGPWPKMTAYERSRVLFRFADLVEKHNDEIATLETWDNGKPFEQAAKTEVPMIVRFFRYYAGFADKIHGLTVPADGEYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVAPALACGNTVVLKTAEQTPLSALYVATLLQEAGLPPGVLNVVSGFGPTAGAALCSHMEVDKVAFTGSTDTGKKVLELAAKSNLKTVTLELGGKSPFIVCEDADVDKAVELAHFALFFNMGQCCCSGSRTFVHERVYDEFIEKAKARAEKRIVGDPFKGGVEQGPQIDSDQFEKILRYIDYGIKSGATLETGGGRLGTKGFYIKPTVFSNVKDDMPIAQDEIFGPVQSILKYKDLDEVIRRANSTRYGLAAGVFTQNIDTANTLTRALRVGSVWINCFDVFDAAIPFGGYKMSGHGREKGIYGLSNYLQVKAVVTLLKNPAWL 534    
BLAST of XM_017378968.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J5W0F2 (Aldedh domain-containing protein {ECO:0000259|Pfam:PF00171})

HSP 1 Score: 856.67 bits (2212), Expect = 0.000e+0
Identity = 405/537 (75.42%), Postives = 468/537 (87.15%), Query Frame = 0
 
Query:    1 MAARRISSLVTHQRSFSPSIALLSSGR---LCHRISQYST-STIEEPVKPPVEVNYSKLLIDGQFVDAVSGKTFPTIDPRTGEVIAHVAEGDKEDIDIAVAAARKAFSKGPWPKMIAYDRSNILLRFADLLEKHNDEIAALESWDTGKPFKQSALVEVPMLTRFFRYYAGWADKIQGLTVPVDGSYHCQTLHEPIGVCGQIIPWNFPLLMYGWKVAPALACGNTVVMKTAEQTPLSALYVSNLLLEAGLPPGVLNIVSGHGNGAGAALCLHMDVDKLAFTGSTETGKKVLAASADSNLKAVTLELGGKSPFIVCEDANIDEAVELAHEALFFNMGQCCCAGSRTYVHERVYDEFVEKAKARAQNRVVGDPFRDGTEQGPQIDSAQYEKILYYIRSGIDCGAKLETGGDKIGEKGFYLKPTVFSNVQDDMMIAQDEIFGPVQSILKFKTLDEVIERANATRYGLAAGVFTRSLETANTMMRALRAGTVWINCYDTFDAAIPFGGYKMSGLGREKGVYGLNNYLQVKAVVMPVKNPAWL 533
            MA+RR+SS+++  RSF+ S +L S+GR   +   I +YST ++ E P+ P V+VNY++LLI+GQFVDA SGKTFPT+DPRTG VIAHVAEGD EDI+ AV+AARKAF +GPWPKM AY+RS +L RFADL+EKHNDEIA LE+WD GKPF+Q+A  EVPM+ RFFRYYAG+ADKI GLTVP DG YH QTLHEPIGV GQIIPWNFPLLM+ WKVAPALACGNTVV+KTAEQTPLSALYV+ LL EAGLPPGVLN+VSG G  AGAALC HM+V+K+AFTGST+TGKKVL  +A SNLK VTLELGGKSPFIVCEDA++D+AVELAH ALFFNMGQCCC+GSRT+VHERVYDEF+EKAKARA+ R+VGDPF+ G EQGPQIDS Q+EKIL YI  GI  GA LETGG ++G  GFY+KPTVFSNV+DDM IAQDEIFGPVQSILK+K LDEVI RAN TRYGLAAGVFT++++TANT+ RALR G+VWINC+D FDAAIPFGGYKMSG GREKG+YGL+NYLQVKAVV P+KNPAWL
Sbjct:    1 MASRRVSSVLS--RSFT-SASLFSAGRSSSVARGIGKYSTDASFEAPIIPSVKVNYTQLLINGQFVDAASGKTFPTLDPRTGNVIAHVAEGDSEDINRAVSAARKAFDEGPWPKMTAYERSRVLFRFADLVEKHNDEIATLETWDNGKPFEQAAKTEVPMIVRFFRYYAGFADKIHGLTVPADGEYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVAPALACGNTVVLKTAEQTPLSALYVATLLQEAGLPPGVLNVVSGFGPTAGAALCSHMEVNKVAFTGSTDTGKKVLELAAKSNLKTVTLELGGKSPFIVCEDADVDKAVELAHFALFFNMGQCCCSGSRTFVHERVYDEFIEKAKARAEKRIVGDPFKGGVEQGPQIDSDQFEKILRYIDYGIKSGATLETGGGRLGTNGFYIKPTVFSNVKDDMPIAQDEIFGPVQSILKYKDLDEVIRRANTTRYGLAAGVFTQNIDTANTLTRALRVGSVWINCFDVFDAAIPFGGYKMSGHGREKGIYGLSNYLQVKAVVTPLKNPAWL 534    
BLAST of XM_017378968.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZUY4 (Aldedh domain-containing protein {ECO:0000259|Pfam:PF00171})

HSP 1 Score: 855.899 bits (2210), Expect = 0.000e+0
Identity = 407/530 (76.79%), Postives = 462/530 (87.17%), Query Frame = 0
 
Query:    1 MAARRISSLVTHQRSFSPSIALLSSGR---LCHRISQYSTST-IEEPVKPPVEVNYSKLLIDGQFVDAVSGKTFPTIDPRTGEVIAHVAEGDKEDIDIAVAAARKAFSKGPWPKMIAYDRSNILLRFADLLEKHNDEIAALESWDTGKPFKQSALVEVPMLTRFFRYYAGWADKIQGLTVPVDGSYHCQTLHEPIGVCGQIIPWNFPLLMYGWKVAPALACGNTVVMKTAEQTPLSALYVSNLLLEAGLPPGVLNIVSGHGNGAGAALCLHMDVDKLAFTGSTETGKKVLAASADSNLKAVTLELGGKSPFIVCEDANIDEAVELAHEALFFNMGQCCCAGSRTYVHERVYDEFVEKAKARAQNRVVGDPFRDGTEQGPQIDSAQYEKILYYIRSGIDCGAKLETGGDKIGEKGFYLKPTVFSNVQDDMMIAQDEIFGPVQSILKFKTLDEVIERANATRYGLAAGVFTRSLETANTMMRALRAGTVWINCYDTFDAAIPFGGYKMSGLGREKGVYGLNNYLQVKAVVMP 526
            MAARRI+SL +   + SPS+ALLS G+   +  RI +YST+  IEEP+KPPV V  ++LLI+GQF DA SGKTFPT+DPRTG+VIAHVAEGD EDI+ AV+AARKAF +GPWPKM AY+RS I+LRFADL+EKH DEIAALE+WD GKP++QSA +EVPM  R FRYYAGWADKI GLT+P DGSYH QTLHEPIGV GQIIPWNFPLLMY WKV PALACGNT+V+KTAEQTPLSALYVS L  EAGLPPGVLN+VSG G  AG+ALC HMDVDKLAFTGSTETGK +L  +A SNLK VTLELGGKSPFIVCEDA++D+AVELAH ALFFN GQCCCAGSRTYVHERVYDEFV+KAKARA  RVVGDPF+ G EQGPQ+DS Q+EKIL YIRSGI+ GA LETGG++ G  G+Y+KPTVFSNV++DM+IA+DEIFGPVQSILKF  +D+VI RANA+RYGLAAGVFT++++TANT+ RALRAGTVWINCYDTFDAAIPFGGYKMSG GREKGVY LNNYLQVKAVV P
Sbjct:    3 MAARRITSLFSPSFT-SPSVALLSQGKNSYIGRRICKYSTAAAIEEPIKPPVSVTDTQLLINGQFQDAASGKTFPTLDPRTGDVIAHVAEGDAEDINRAVSAARKAFDEGPWPKMTAYERSRIMLRFADLVEKHVDEIAALETWDNGKPYEQSAKIEVPMFVRVFRYYAGWADKIHGLTIPADGSYHVQTLHEPIGVAGQIIPWNFPLLMYAWKVGPALACGNTIVLKTAEQTPLSALYVSRLFHEAGLPPGVLNVVSGFGRTAGSALCSHMDVDKLAFTGSTETGKLILEMAARSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTYVHERVYDEFVDKAKARAMKRVVGDPFKQGIEQGPQVDSKQFEKILKYIRSGIESGATLETGGERHGSTGYYIKPTVFSNVKEDMLIAKDEIFGPVQSILKFNDIDDVIRRANASRYGLAAGVFTQNIDTANTLTRALRAGTVWINCYDTFDAAIPFGGYKMSGHGREKGVYSLNNYLQVKAVVTP 531    
BLAST of XM_017378968.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7DK44 ((Aldehyde dehydrogenase family 2 member B7 mitochondrial-like {ECO:0000313|EMBL:KAF5746614.1}))

HSP 1 Score: 855.514 bits (2209), Expect = 0.000e+0
Identity = 403/537 (75.05%), Postives = 462/537 (86.03%), Query Frame = 0
 
Query:    1 MAARRISSLVTHQRSFSPSIALLSSGR---LCHRISQYSTST-IEEPVKPPVEVNYSKLLIDGQFVDAVSGKTFPTIDPRTGEVIAHVAEGDKEDIDIAVAAARKAFSKGPWPKMIAYDRSNILLRFADLLEKHNDEIAALESWDTGKPFKQSALVEVPMLTRFFRYYAGWADKIQGLTVPVDGSYHCQTLHEPIGVCGQIIPWNFPLLMYGWKVAPALACGNTVVMKTAEQTPLSALYVSNLLLEAGLPPGVLNIVSGHGNGAGAALCLHMDVDKLAFTGSTETGKKVLAASADSNLKAVTLELGGKSPFIVCEDANIDEAVELAHEALFFNMGQCCCAGSRTYVHERVYDEFVEKAKARAQNRVVGDPFRDGTEQGPQIDSAQYEKILYYIRSGIDCGAKLETGGDKIGEKGFYLKPTVFSNVQDDMMIAQDEIFGPVQSILKFKTLDEVIERANATRYGLAAGVFTRSLETANTMMRALRAGTVWINCYDTFDAAIPFGGYKMSGLGREKGVYGLNNYLQVKAVVMPVKNPAWL 533
            MAARR+SSL++   +   + ALLS G+   L  RI +YST+T IEEP+ P V VNY++LLI+GQFVDA SGKTFPT+DPRTG+VIA VAEGD EDID AV+AARKAF +GPWPKM AY+R  +LLRFADL+EKHNDE+AALE+WD GKP++Q+A +E+PM+TR  RYYAGWADKI GLTVP DGSYH QTLHEPIGV GQIIPWNFPLLM+ WKV PALACGNT+V+KTAEQTPLSALY+S L  EAGLP GVLN++SG G  AGAAL  HM+VDKLAFTGST TG++VL  +A SNLK VTLELGGKSPFIVC DA++D+AVELAH ALFFN GQCCCAGSRT+VHE VYDEFVEKAKA A  R VGDPF+ G EQGPQIDS Q+EKI+ YIRSGID GA LETGG++ G KGFY+KPTVFSNVQDDM+IA+DEIFGPVQSILKFK L+EVI RANAT YGLAAGVFT+ ++TANT+MRALR GTVWINC+D FDAAIPFGGYKMSG+GREKG+Y L+NYLQVKAVV P+ NPAWL
Sbjct:    1 MAARRLSSLMSRSFNSVSASALLSKGKNSGLSRRICRYSTATDIEEPINPNVNVNYTQLLINGQFVDAASGKTFPTLDPRTGDVIAQVAEGDSEDIDRAVSAARKAFDEGPWPKMSAYERQRVLLRFADLVEKHNDELAALETWDNGKPYEQAAKIELPMITRLIRYYAGWADKIHGLTVPADGSYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYMSKLFHEAGLPEGVLNVISGFGPTAGAALASHMEVDKLAFTGSTVTGQRVLELAAKSNLKPVTLELGGKSPFIVCHDADVDKAVELAHLALFFNQGQCCCAGSRTFVHESVYDEFVEKAKALAMKRTVGDPFKQGIEQGPQIDSEQFEKIMKYIRSGIDNGATLETGGERFGNKGFYVKPTVFSNVQDDMLIAKDEIFGPVQSILKFKDLNEVIRRANATNYGLAAGVFTQDIDTANTLMRALRVGTVWINCFDVFDAAIPFGGYKMSGIGREKGIYSLSNYLQVKAVVTPLTNPAWL 537    
BLAST of XM_017378968.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TW89 (Aldedh domain-containing protein {ECO:0000259|Pfam:PF00171})

HSP 1 Score: 855.514 bits (2209), Expect = 0.000e+0
Identity = 402/503 (79.92%), Postives = 445/503 (88.47%), Query Frame = 0
 
Query:   32 ISQYSTST-IEEPVKPPVEVNYSKLLIDGQFVDAVSGKTFPTIDPRTGEVIAHVAEGDKEDIDIAVAAARKAFSKGPWPKMIAYDRSNILLRFADLLEKHNDEIAALESWDTGKPFKQSALVEVPMLTRFFRYYAGWADKIQGLTVPVDGSYHCQTLHEPIGVCGQIIPWNFPLLMYGWKVAPALACGNTVVMKTAEQTPLSALYVSNLLLEAGLPPGVLNIVSGHGNGAGAALCLHMDVDKLAFTGSTETGKKVLAASADSNLKAVTLELGGKSPFIVCEDANIDEAVELAHEALFFNMGQCCCAGSRTYVHERVYDEFVEKAKARAQNRVVGDPFRDGTEQGPQIDSAQYEKILYYIRSGIDCGAKLETGGDKIGEKGFYLKPTVFSNVQDDMMIAQDEIFGPVQSILKFKTLDEVIERANATRYGLAAGVFTRSLETANTMMRALRAGTVWINCYDTFDAAIPFGGYKMSGLGREKGVYGLNNYLQVKAVVMPVKNPAWL 533
            IS+YST+  +EEP+KPPV V Y+KLLI+GQFVDA SGKTFPT+DPRTGEVIAHVAEGD ED++ AVAAARKAF +GPWPK+ AYDR  ILLRFADL+EKHNDEIAALE+WD GKP++Q+A +EVPM  R  RYYAGWADKI G+TVP DG YH QTLHEPIGV GQIIPWNFPLLMY WKV PALACGNTVV+KTAEQTPLSALYV+ LL EAGLP GVLN+VSG G  AGAALC HMDVDKLAFTGSTETGK +L  SA SNLK VTLELGGKSPFIVCEDA++D AVELAH ALFFN GQCCCAGSRTYVHERVYDEFVEKA ARA  R VGDPFR   EQGPQ+DS Q+EKIL YIR+G+D GA LETGGD++GEKG+Y+KPTVFSNVQDDM IA++EIFGPVQ+ILK+K LDEVI RAN+TRYGLAAGVFT++L+TANT+MRALRAGTVWINC+DTFDAAIPFGGYKMSG GREKG Y L NYLQVKAVV P+KNPAWL
Sbjct:   36 ISRYSTAAALEEPIKPPVNVEYTKLLINGQFVDAASGKTFPTLDPRTGEVIAHVAEGDAEDVNRAVAAARKAFDEGPWPKLTAYDRQRILLRFADLVEKHNDEIAALETWDNGKPYEQAAKIEVPMFVRLMRYYAGWADKIHGMTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMYAWKVGPALACGNTVVLKTAEQTPLSALYVTKLLHEAGLPSGVLNVVSGFGPTAGAALCSHMDVDKLAFTGSTETGKIILELSARSNLKPVTLELGGKSPFIVCEDADVDNAVELAHFALFFNQGQCCCAGSRTYVHERVYDEFVEKATARALKRSVGDPFRQEIEQGPQVDSEQFEKILRYIRAGVDSGATLETGGDRLGEKGYYIKPTVFSNVQDDMPIAKEEIFGPVQTILKYKDLDEVIRRANSTRYGLAAGVFTQNLDTANTLMRALRAGTVWINCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVTPLKNPAWL 538    
BLAST of XM_017378968.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AJ15 (Aldedh domain-containing protein {ECO:0000259|Pfam:PF00171})

HSP 1 Score: 852.818 bits (2202), Expect = 0.000e+0
Identity = 404/538 (75.09%), Postives = 465/538 (86.43%), Query Frame = 0
 
Query:    1 MAARRISSLVTHQRSFSPSIALLSS-GRLC---HRISQYSTST-IEEPVKPPVEVNYSKLLIDGQFVDAVSGKTFPTIDPRTGEVIAHVAEGDKEDIDIAVAAARKAFSKGPWPKMIAYDRSNILLRFADLLEKHNDEIAALESWDTGKPFKQSALVEVPMLTRFFRYYAGWADKIQGLTVPVDGSYHCQTLHEPIGVCGQIIPWNFPLLMYGWKVAPALACGNTVVMKTAEQTPLSALYVSNLLLEAGLPPGVLNIVSGHGNGAGAALCLHMDVDKLAFTGSTETGKKVLAASADSNLKAVTLELGGKSPFIVCEDANIDEAVELAHEALFFNMGQCCCAGSRTYVHERVYDEFVEKAKARAQNRVVGDPFRDGTEQGPQIDSAQYEKILYYIRSGIDCGAKLETGGDKIGEKGFYLKPTVFSNVQDDMMIAQDEIFGPVQSILKFKTLDEVIERANATRYGLAAGVFTRSLETANTMMRALRAGTVWINCYDTFDAAIPFGGYKMSGLGREKGVYGLNNYLQVKAVVMPVKNPAWL 533
            MA RRISSL++    FS + A L S GR       +S++ST+   EEP+ PPV+++Y++LLI+GQFVDA SGKTF T+DPRTG+VIAHVAEG+ ED++ AV+AARKAF +GPWP+M  Y+RS I+LRFADLLEKHNDEIAALE+WD GKP++Q+A  EVPMLTR  RYYAGWADKI GLTVP DG +H Q LHEPIGV GQIIPWNFPLLMY WKV PALACGNTVV+KTAEQTPLSALYVS L  EAGLPPGVLN+VSG G  AGAAL  HMDVDKLAFTGST+TGK VL  +A SNLK VTLELGGKSPFIVCEDA+ID+AVELAH ALFFN GQCCCAGSRT+VHERVYDEF+EKAKARA NRVVGDPF+ G EQGPQIDS Q+EKIL YIR G++ GA LE+GG++ G KG+Y++PTVFSNVQDDM+IA+DEIFGPVQ+ILKFK LDEV++RAN TRYGLAAGVFT++++TANT+MRALRAG+VWINC+D FDAAIPFGGYKMSG GREKG+Y LNNYLQVKAVV P+KNPAWL
Sbjct:    1 MATRRISSLLSRPSLFSYTAASLRSFGRYSSWGRGVSKFSTAVAFEEPITPPVQIDYTQLLINGQFVDAASGKTFTTLDPRTGDVIAHVAEGEAEDVNRAVSAARKAFDEGPWPRMTPYERSRIMLRFADLLEKHNDEIAALETWDNGKPYEQAANTEVPMLTRLIRYYAGWADKIHGLTVPADGLHHVQILHEPIGVAGQIIPWNFPLLMYAWKVGPALACGNTVVLKTAEQTPLSALYVSKLFHEAGLPPGVLNVVSGFGPTAGAALASHMDVDKLAFTGSTDTGKIVLGLAAKSNLKPVTLELGGKSPFIVCEDADIDKAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFLEKAKARALNRVVGDPFKKGVEQGPQIDSEQFEKILKYIRFGVESGATLESGGERFGSKGYYIQPTVFSNVQDDMLIAKDEIFGPVQTILKFKDLDEVVQRANNTRYGLAAGVFTQNIDTANTLMRALRAGSVWINCFDIFDAAIPFGGYKMSGQGREKGIYSLNNYLQVKAVVTPLKNPAWL 538    
Match NameStatsDescription
A0A6P6V602E-Value: 0.000e+0, PID: 76.77(aldehyde dehydrogenase family 2 member B7, mitoch... [more]
A0A6P5S8F3E-Value: 0.000e+0, PID: 75.79(aldehyde dehydrogenase family 2 member B7, mitoch... [more]
M5XAM9E-Value: 0.000e+0, PID: 75.42Aldedh domain-containing protein {ECO:0000259|Pfam... [more]
A0A314UVY1E-Value: 0.000e+0, PID: 75.79(Aldehyde dehydrogenase family 2 member B7 mitocho... [more]
A0A4Y1QQG3E-Value: 0.000e+0, PID: 75.61(Aldehyde dehydrogenase 2B4 {ECO:0000313|EMBL:BBG9... [more]
A0A6J5W0F2E-Value: 0.000e+0, PID: 75.42Aldedh domain-containing protein {ECO:0000259|Pfam... [more]
A0A5B6ZUY4E-Value: 0.000e+0, PID: 76.79Aldedh domain-containing protein {ECO:0000259|Pfam... [more]
A0A7J7DK44E-Value: 0.000e+0, PID: 75.05(Aldehyde dehydrogenase family 2 member B7 mitocho... [more]
A0A068TW89E-Value: 0.000e+0, PID: 79.92Aldedh domain-containing protein {ECO:0000259|Pfam... [more]
A0A5J5AJ15E-Value: 0.000e+0, PID: 75.09Aldedh domain-containing protein {ECO:0000259|Pfam... [more]
back to top
Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.

This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
Loading content