XM_017380067.1

Resource Type: 
Polypeptide
Name: 
XM_017380067.1
Identifier: 
XM_017380067.1-protein
Sequence: 
MMFELGRYRSRILRDALWKCLLLLMCVLVRSSPPENPIRCTTFNSSTKCT
ITNSYGAFPDRSTCRAADAVYPTTEEELVSVVAMATKNGRKMKVATRFGH
SIPKLVCADGDQGLLISTEYLNRTLHINESSGMMRVETGVTLKQLIEDAA
KAGLALPYAPYWWGLTVGGLMGTGAHGSSLWGKGSSVHDYVVQLRIVTPA
EHADGYARVRNLDDYNQLEFNAAKVSLGVLGVISEVTLKLEPLFKRSVTY
IEKSDSDLAEQVIEFGKQHEFADLIWYPSQRKAMYRMDDRVPYNTSGNAW
IDFPGFQSTPSVALAILRLTEEAEESKADADSKCRRAKLITSALRLSGYG
FTNNGIIFTGYPVIGYHNRLQASGACLTGPENALITACPWDHRIKALFYH
QTTFSIGLSKVPDFIRDVQKLVHLAPKSLCGVDLYDGILMRYVTRSNAFL
GKQEDAVDFDITYYRSKDPLRPRLFQDILEEIEQLGMFKYGALPHWGKNR
NVAFHKAINKYKKAAEFIKVKRMYDPQGLFSSEWTDQVLGLKDGLMIVKQ
GCGLEGLCICSEDSHCAPDKGYLCQQGKVYPDAKVCALASTSS
Sequence Length: 
593
Sequence Checksum: 
f14d8e59c69c6d6b923bb5dc66b5a594
View location in JBrowse: 
DCARv2_Chr2:43581395..43583407+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017380067.1, derives from mRNA, XM_017380067.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017380067.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017380067.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4B1A6 (L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA00013121} (1.1.3.8 {ECO:0000256|ARBA:ARBA00013121}))

HSP 1 Score: 839.336 bits (2167), Expect = 0.000e+0
Identity = 392/573 (68.41%), Postives = 473/573 (82.55%), Query Frame = 0
 
Query:   20 CLLLLMCV-LVRSSPPENPIRCTTFNSSTKCTITNSYGAFPDRSTCRAADAVYPTTEEELVSVVAMATKNGRKMKVATRFGHSIPKLVCADGDQGLLISTEYLNRTLHINESSGMMRVETGVTLKQLIEDAAKAGLALPYAPYWWGLTVGGLMGTGAHGSSLWGKGSSVHDYVVQLRIVTPAEHADGYARVRNLDDYNQLEFNAAKVSLGVLGVISEVTLKLEPLFKRSVTYIEKSDSDLAEQVIEFGKQHEFADLIWYPSQRKAMYRMDDRVPYNTSGNAWIDFPGFQSTPSVALAILRLTEEAEESKADADSKCRRAKLITSALRLSGYGFTNNGIIFTGYPVIGYHNRLQASGACLTGPENALITACPWDHRIKALFYHQTTFSIGLSKVPDFIRDVQKLVHLAPKSLCGVDLYDGILMRYVTRSNAFLGKQEDAVDFDITYYRSKDPLRPRLFQDILEEIEQLGMFKYGALPHWGKNRNVAFHKAINKYKKAAEFIKVKRMYDPQGLFSSEWTDQVLGLKDGLMIVKQGCGLEGLCICSEDSHCAPDKGYLCQQGKVYPDAKVCALAST 591
            C+  LM + LV+SSPPE+PI+CT+ N++  CTITNSYGAFPDRS CRA  AV+PTTEEEL++VVA AT   RKMKV TRF HSIPKLVC DG+ GLLIST++LN+ L +++ +  + VE+GVTLKQLI +AAK+GL LPYAPYWWGLT+GGL+GTGAHGSSLWG GSSVHDY++QLRIVTPAE A  YA++R L++ N  E +AA+VSLGVLGVIS+VTLK+EP+FKRS+T  E++DS+L ++ + FG++HEFAD  WYPSQRK +YR+DDRVP NT GN   DF GF+ST S+ LAILR +EE +ES+ D+  KC  AKL TS L++  YG TNNG  FTGYPV+G+HNR+QASG CL   E+A ITACPWD R+K LF+HQTTFSI LSKV  FI+DVQKLV L PK+LC +DLY+GILMRY+T SNA+LG+QEDA+DFDITYYRSKDP+ PRLF+D LEE+EQL  FKYGALPHWGKNRNVAF  AI KY+ A +F+KVK+ YD  GLFSSEWTDQVLGLKDGL IVK+GC LEGLCICSED HCAP KGY C+ GK+Y DA+VCA  S+
Sbjct:    8 CIYFLMILNLVKSSPPEDPIKCTS-NNNFNCTITNSYGAFPDRSICRAGQAVFPTTEEELIAVVANATMIKRKMKVTTRFSHSIPKLVCPDGEDGLLISTKFLNKILSVDKENMSITVESGVTLKQLISEAAKSGLVLPYAPYWWGLTIGGLIGTGAHGSSLWGLGSSVHDYILQLRIVTPAEAAQNYAQIRTLENGNP-ELDAARVSLGVLGVISQVTLKVEPVFKRSITLSERNDSELGDETVVFGRKHEFADFTWYPSQRKVVYRIDDRVPANTPGNGLNDFLGFRSTASLVLAILRSSEENQESRNDSGGKCTSAKLTTSTLKIGAYGLTNNGFAFTGYPVVGFHNRVQASGTCLNSLEDARITACPWDSRVKGLFFHQTTFSINLSKVKGFIQDVQKLVALEPKALCVLDLYNGILMRYLTTSNAYLGEQEDALDFDITYYRSKDPMSPRLFEDFLEEVEQLAFFKYGALPHWGKNRNVAFIGAIKKYRNADKFLKVKQRYDKLGLFSSEWTDQVLGLKDGLTIVKEGCALEGLCICSEDIHCAPQKGYFCRPGKIYKDARVCARLSS 578
[Close]
BLAST of XM_017380067.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1A099 (L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA00013121} (1.1.3.8 {ECO:0000256|ARBA:ARBA00013121}))

HSP 1 Score: 834.713 bits (2155), Expect = 0.000e+0
Identity = 385/574 (67.07%), Postives = 470/574 (81.88%), Query Frame = 0
 
Query:   19 KCLLLLMCVLVRSSPPENPIRCTTFNSSTKCTITNSYGAFPDRSTCRAADAVYPTTEEELVSVVAMATKNGRKMKVATRFGHSIPKLVCADGDQGLLISTEYLNRTLHINESSGMMRVETGVTLKQLIEDAAKAGLALPYAPYWWGLTVGGLMGTGAHGSSLWGKGSSVHDYVVQLRIVTPAEHADGYARVRNLDDYNQLEFNAAKVSLGVLGVISEVTLKLEPLFKRSVTYIEKSDSDLAEQVIEFGKQHEFADLIWYPSQRKAMYRMDDRVPYNTSGNAWIDFPGFQSTPSVALAILRLTEEAEESKADADSKCRRAKLITSALRLSGYGFTNNGIIFTGYPVIGYHNRLQASGACLTGPENALITACPWDHRIKALFYHQTTFSIGLSKVPDFIRDVQKLVHLAPKSLCGVDLYDGILMRYVTRSNAFLGKQEDAVDFDITYYRSKDPLRPRLFQDILEEIEQLGMFKYGALPHWGKNRNVAFHKAINKYKKAAEFIKVKRMYDPQGLFSSEWTDQVLGLKDGLMIVKQGCGLEGLCICSEDSHCAPDKGYLCQQGKVYPDAKVCALASTS 592
            KCL L + ++V  +PPE P++C++ +S+  CTI+NSYG+FPDR  CRA +  YPTTE ELVS+V+ A +  RKMKV TRF HSIPKLVC DG+ GLLIST+YLN TL I+ ++  M VE+GVTL+QLI DAAKAGLALPYAPYWWGLT+GGL+GTGAHGSSLWGKGSSVHDYVV++RIV+PA   +GYA+VR L + ++ +  AAKVSLGVLGVIS+VT KL+PLFKRS++Y+ + D+DL ++ I FGKQHEFAD+IWYPSQRKA+YR+DDRV  N SGN   DF  F+ST S+ALA +R TEE +ES  DAD KC  AKL+ S L+ + YG TNNGIIFTGYPVIG+HNRLQ+SG CL  PE++LITACPWD RIK  F+HQT FS+GLS V  FI+DVQKLV L PK+LCG++LY GILMRYV  S+A+LGKQEDA+DFDITYYRSKDP+ PRL+QDI+EEIEQ+ +FKYGALPHWGKNRN+AF   I +YK A +F+KVK MYDP GLFSSEWTDQ+LGL++G+  +K+GC LEG CICS D HCAP KGYLC+ GK + +AKVCA  S+S
Sbjct:   17 KCLFLFV-IMVSCTPPEEPVKCSSKDSN--CTISNSYGSFPDRKICRAGNVAYPTTENELVSIVSAAAEAKRKMKVVTRFSHSIPKLVCPDGEDGLLISTKYLNHTLKIDAAAMTMTVESGVTLRQLINDAAKAGLALPYAPYWWGLTIGGLLGTGAHGSSLWGKGSSVHDYVVEMRIVSPAGAKEGYAKVRVLHERDK-DLEAAKVSLGVLGVISQVTFKLQPLFKRSISYVTQDDADLGDEAITFGKQHEFADIIWYPSQRKAVYRIDDRVSSNASGNGLYDFTPFRSTLSLALAFIRTTEETQESLRDADGKCLGAKLVVSTLQTAAYGLTNNGIIFTGYPVIGFHNRLQSSGTCLDSPEDSLITACPWDPRIKGEFFHQTAFSVGLSVVKSFIQDVQKLVALEPKALCGLELYSGILMRYVKASSAYLGKQEDAIDFDITYYRSKDPMAPRLYQDIIEEIEQIALFKYGALPHWGKNRNLAFDGVIERYKNAGKFLKVKNMYDPSGLFSSEWTDQILGLRNGVTTLKEGCALEGSCICSHDIHCAPSKGYLCRPGKTFQNAKVCARVSSS 586
[Close]
BLAST of XM_017380067.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6J1X9 (L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA00013121} (1.1.3.8 {ECO:0000256|ARBA:ARBA00013121}) (Fragment))

HSP 1 Score: 833.943 bits (2153), Expect = 0.000e+0
Identity = 391/568 (68.84%), Postives = 466/568 (82.04%), Query Frame = 0
 
Query:   20 CLLLLMCV-LVRSSPPENPIRCTTFNSSTKCTITNSYGAFPDRSTCRAADAVYPTTEEELVSVVAMATKNGRKMKVATRFGHSIPKLVCADGDQGLLISTEYLNRTLHINESSGMMRVETGVTLKQLIEDAAKAGLALPYAPYWWGLTVGGLMGTGAHGSSLWGKGSSVHDYVVQLRIVTPAEHADGYARVRNLDDYNQLEFNAAKVSLGVLGVISEVTLKLEPLFKRSVTYIEKSDSDLAEQVIEFGKQHEFADLIWYPSQRKAMYRMDDRVPYNTSGNAWIDFPGFQSTPSVALAILRLTEEAEESKADADSKCRRAKLITSALRLSGYGFTNNGIIFTGYPVIGYHNRLQASGACLTGPENALITACPWDHRIKALFYHQTTFSIGLSKVPDFIRDVQKLVHLAPKSLCGVDLYDGILMRYVTRSNAFLGKQEDAVDFDITYYRSKDPLRPRLFQDILEEIEQLGMFKYGALPHWGKNRNVAFHKAINKYKKAAEFIKVKRMYDPQGLFSSEWTDQVLGLKDGLMIVKQGCGLEGLCICSEDSHCAPDKGYLCQQGKVYPDAKVC 586
            C+  LM + +V+SSPPE+PI+CT+ N+   CTITNSYGAFPDRS CRA  AV+PTTEEEL+SVVA AT   RKMKV TRF HSIPKLVC DG+ GLLIST++LN+ L +++ +  + VE+GVTLKQLI +AAK+GL LPYAPYWWGLT+GGL+GTGAHGSSLWG GSSVHDY+VQLRIVTPAE A  YA++R L++ N  E +AA+VSLGVLGVIS++TLKLEP+FKR++T  E++DSDL ++   FG++HEFAD  WYPSQR  +YR+DDRVP NT GN   DF GF+ST S+ LAILR TEE +ES+ D+  KC  AKL TS L++  YG TNNG  FTGYPV+G+HNR+QA+G CL   E+A ITACPWD R+K LF+HQTTFSI LSKV  FI+DVQKLV L PK+LC +DLY+GILMRY+T SNA+LG+QEDAVDFDITYYRSKDP+ PRLF+D LEE+EQL  FKYGALPHWGKNRNVAF  AI KY+ A +F+KVK  YD  GLFSSEWTDQVLGLKDGL IVK+GC LEGLCICSED HCAP KGY C+ GK+Y DA+VC
Sbjct:    7 CIYFLMILNVVKSSPPEDPIKCTSKNN-FNCTITNSYGAFPDRSICRAGQAVFPTTEEELISVVANATMIKRKMKVTTRFSHSIPKLVCPDGEDGLLISTKFLNKILRVDQENMSITVESGVTLKQLISEAAKSGLVLPYAPYWWGLTIGGLIGTGAHGSSLWGLGSSVHDYIVQLRIVTPAEAAQNYAQIRILENGNP-ELDAARVSLGVLGVISQITLKLEPVFKRAITLSERNDSDLGDEAAVFGRKHEFADFTWYPSQRMVVYRIDDRVPANTPGNGLNDFLGFRSTASLVLAILRSTEENQESRNDSGGKCASAKLTTSTLKIGAYGLTNNGFAFTGYPVVGFHNRVQATGTCLNSLEDARITACPWDSRVKGLFFHQTTFSINLSKVKGFIQDVQKLVTLEPKALCVLDLYNGILMRYLTASNAYLGEQEDAVDFDITYYRSKDPMSPRLFEDFLEEVEQLAFFKYGALPHWGKNRNVAFIGAIKKYRNADKFLKVKEKYDKLGLFSSEWTDQVLGLKDGLTIVKEGCALEGLCICSEDIHCAPKKGYFCRPGKIYKDARVC 572
[Close]
BLAST of XM_017380067.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7YAP2 (L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA00013121} (1.1.3.8 {ECO:0000256|ARBA:ARBA00013121}))

HSP 1 Score: 832.402 bits (2149), Expect = 0.000e+0
Identity = 386/559 (69.05%), Postives = 462/559 (82.65%), Query Frame = 0
 
Query:   28 LVRSSPPENPIRCTTFNSSTKCTITNSYGAFPDRSTCRAADAVYPTTEEELVSVVAMATKNGRKMKVATRFGHSIPKLVCADGDQGLLISTEYLNRTLHINESSGMMRVETGVTLKQLIEDAAKAGLALPYAPYWWGLTVGGLMGTGAHGSSLWGKGSSVHDYVVQLRIVTPAEHADGYARVRNLDDYNQLEFNAAKVSLGVLGVISEVTLKLEPLFKRSVTYIEKSDSDLAEQVIEFGKQHEFADLIWYPSQRKAMYRMDDRVPYNTSGNAWIDFPGFQSTPSVALAILRLTEEAEESKADADSKCRRAKLITSALRLSGYGFTNNGIIFTGYPVIGYHNRLQASGACLTGPENALITACPWDHRIKALFYHQTTFSIGLSKVPDFIRDVQKLVHLAPKSLCGVDLYDGILMRYVTRSNAFLGKQEDAVDFDITYYRSKDPLRPRLFQDILEEIEQLGMFKYGALPHWGKNRNVAFHKAINKYKKAAEFIKVKRMYDPQGLFSSEWTDQVLGLKDGLMIVKQGCGLEGLCICSEDSHCAPDKGYLCQQGKVYPDAKVC 586
            LV+SSPPE+PI+CT + ++  CTITNSYGAFPDRS C+A  AV+PTTEEEL+SVVA AT   RKMKV TRF HSIPKLVC DG+ GLLIST++LN+ L +++ +  + VE+GVTLKQLI +AAK+GL LPYAPYWWGLT+GGL+GTGAHGSSLWG GSSVHDY+VQLRIVTPAE A  YA++R L++ N  E +AA+VSLGVLGVIS++TLKLEP+FKR++T  E++DSDL ++   FG++HEF D  WYPSQRK +YR+DDRVP NT GN   DFPGF+ST S+ LAILR +EE +ES+ D+  KC  AKL TS L++  YG TNNG  FTGYPV+G+HNR+QASG CL   E+A ITACPWD R+K LF+HQTTFSI LSKV  FI+DVQKLV L PK+LC +DLY+GILMRY+T SNA+LG+QEDA+DFDITYYRSKDP+ PRLF+D LEE+EQL  FKYGALPHWGKNRNVAF  AI KY+ A +F+KVK  YD  GLFSSEWTDQVLGLKDGL+IVK+GC LEGLCICSED HCAP  GY C+ GK+Y DA+VC
Sbjct:    5 LVKSSPPEDPIKCT-YKNNFNCTITNSYGAFPDRSICKAGQAVFPTTEEELISVVANATMIKRKMKVTTRFSHSIPKLVCPDGEDGLLISTKFLNKILRVDQENMSITVESGVTLKQLISEAAKSGLVLPYAPYWWGLTIGGLIGTGAHGSSLWGLGSSVHDYIVQLRIVTPAEAAQNYAQIRTLENGNP-ELDAARVSLGVLGVISQITLKLEPVFKRAITLSERNDSDLGDEAAVFGRKHEFGDFTWYPSQRKVVYRIDDRVPANTPGNGLNDFPGFRSTASLVLAILRSSEENQESRNDSGGKCASAKLTTSTLKIGAYGLTNNGFAFTGYPVVGFHNRVQASGTCLNSLEDARITACPWDSRVKGLFFHQTTFSINLSKVKGFIQDVQKLVDLEPKALCVLDLYNGILMRYLTASNAYLGEQEDALDFDITYYRSKDPMSPRLFEDFLEEVEQLAFFKYGALPHWGKNRNVAFIGAIKKYRNAGKFLKVKERYDKLGLFSSEWTDQVLGLKDGLIIVKEGCALEGLCICSEDIHCAPKMGYFCRPGKIYKDARVC 561
[Close]
BLAST of XM_017380067.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1W3C4 (L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA00013121} (1.1.3.8 {ECO:0000256|ARBA:ARBA00013121}))

HSP 1 Score: 830.476 bits (2144), Expect = 0.000e+0
Identity = 390/567 (68.78%), Postives = 458/567 (80.78%), Query Frame = 0
 
Query:   20 CLLLLMCVLVRSSPPENPIRCTTFNSSTKCTITNSYGAFPDRSTCRAADAVYPTTEEELVSVVAMATKNGRKMKVATRFGHSIPKLVCADGDQGLLISTEYLNRTLHINESSGMMRVETGVTLKQLIEDAAKAGLALPYAPYWWGLTVGGLMGTGAHGSSLWGKGSSVHDYVVQLRIVTPAEHADGYARVRNLDDYNQLEFNAAKVSLGVLGVISEVTLKLEPLFKRSVTYIEKSDSDLAEQVIEFGKQHEFADLIWYPSQRKAMYRMDDRVPYNTSGNAWIDFPGFQSTPSVALAILRLTEEAEESKADADSKCRRAKLITSALRLSGYGFTNNGIIFTGYPVIGYHNRLQASGACLTGPENALITACPWDHRIKALFYHQTTFSIGLSKVPDFIRDVQKLVHLAPKSLCGVDLYDGILMRYVTRSNAFLGKQEDAVDFDITYYRSKDPLRPRLFQDILEEIEQLGMFKYGALPHWGKNRNVAFHKAINKYKKAAEFIKVKRMYDPQGLFSSEWTDQVLGLKDGLMIVKQGCGLEGLCICSEDSHCAPDKGYLCQQGKVYPDAKVC 586
            CL LL+ + V  SPPE+PI+C++ N  T CTITNSYG FPDRS CRA +  YP+TEEEL+SVVA  T++ RKMKVATRF HSIPKLVC DG  GLLIST+YLNRTL I+  S  M VETGVTL+QLI DA+ AGLALPYAPYWWGLT+GGL+ TGAHGS+LWGKGSSVHDYVV+LR+V+P     GYA+VR L+D ++ + NAAKVSLGVLGVIS+VTLKL+PLFKRS++Y+ K DSDL +QV  FG +HEFAD+ WYPSQ KA+YR+D RVP NTSG+   DF  F+STP++ LAI+R +EE +ES  DA+ KC  AK I S L    YG +NNGI FT YPVIGYHNRLQASG+CL   E+A ITAC WDHR+K  F+HQTTFSIGLS    FI DVQKL+ L PK++CGVDLY+GILMRYV  S+A+LGKQEDAVDFDITYYRSKDP+ PRL++D+LEEIEQL +F+Y ALPHWGKNRN+AF  AI KYK A EF+KVK  YDP GLFSSEWTDQ+LGLKDG  + K GC LEGLCICS+DSHCAP  GY C+ GKVY DA+VC
Sbjct:   18 CLFLLI-IFVSCSPPEDPIKCSSKN--TNCTITNSYGTFPDRSVCRAVEVAYPSTEEELISVVATTTRSKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNRTLRIDVKSMTMTVETGVTLRQLINDASHAGLALPYAPYWWGLTIGGLLSTGAHGSTLWGKGSSVHDYVVELRVVSPGGPEGGYAKVRTLNDGDK-DMNAAKVSLGVLGVISQVTLKLQPLFKRSISYMTKDDSDLGDQVASFGSEHEFADITWYPSQHKAVYRIDYRVPTNTSGDGRNDFTPFRSTPTLELAIIRTSEEVQESNMDANGKCINAKTIISLLLSGAYGLSNNGIAFTSYPVIGYHNRLQASGSCLDSLEDARITACAWDHRVKGEFFHQTTFSIGLSMAKSFIEDVQKLIELEPKAMCGVDLYNGILMRYVKASSAYLGKQEDAVDFDITYYRSKDPMIPRLYEDVLEEIEQLALFRYQALPHWGKNRNLAFDGAIKKYKNAGEFLKVKEGYDPSGLFSSEWTDQILGLKDGATVAKYGCALEGLCICSQDSHCAPSLGYYCRPGKVYKDARVC 580
[Close]
BLAST of XM_017380067.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061DT84 (L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA00013121} (1.1.3.8 {ECO:0000256|ARBA:ARBA00013121}))

HSP 1 Score: 828.165 bits (2138), Expect = 0.000e+0
Identity = 382/574 (66.55%), Postives = 471/574 (82.06%), Query Frame = 0
 
Query:   19 KCLLLLMCVLVRSSPPENPIRCTTFNSSTKCTITNSYGAFPDRSTCRAADAVYPTTEEELVSVVAMATKNGRKMKVATRFGHSIPKLVCADGDQGLLISTEYLNRTLHINESSGMMRVETGVTLKQLIEDAAKAGLALPYAPYWWGLTVGGLMGTGAHGSSLWGKGSSVHDYVVQLRIVTPAEHADGYARVRNLDDYNQLEFNAAKVSLGVLGVISEVTLKLEPLFKRSVTYIEKSDSDLAEQVIEFGKQHEFADLIWYPSQRKAMYRMDDRVPYNTSGNAWIDFPGFQSTPSVALAILRLTEEAEESKADADSKCRRAKLITSALRLSGYGFTNNGIIFTGYPVIGYHNRLQASGACLTGPENALITACPWDHRIKALFYHQTTFSIGLSKVPDFIRDVQKLVHLAPKSLCGVDLYDGILMRYVTRSNAFLGKQEDAVDFDITYYRSKDPLRPRLFQDILEEIEQLGMFKYGALPHWGKNRNVAFHKAINKYKKAAEFIKVKRMYDPQGLFSSEWTDQVLGLKDGLMIVKQGCGLEGLCICSEDSHCAPDKGYLCQQGKVYPDAKVCALASTS 592
            KCL L + ++V  +PPE P++C++ +S+  CTI+NSYG+FPDR+ CRA +  YPTTE+ELVS+V+ A +  RKMKV TRF HSIPKLVC DG+ GLLIST+YLN TL I+ ++  M VE+GVTL+QLI DAAKAGLALP+APYWWGLT+GGL+GTGAHGSSLWGKGSSVHDYVV++R+V+PA   +GYA+VR L++ ++ + +AAKVSLGVLGVIS+VT KL+PLFKRS++Y+ K D+DL ++ I FGKQHEFAD+ WYPSQRKA+YR+DDRV  N SG    DF  F+STPS+ALA +R TEE +ES  DAD KC   KLI S L+ + YG TNNGIIFTGYPVIG+HNRLQ+SG CL  PE++LITACPWD RIK  F+ Q+TFS+GLS V  FI+DVQKLV L PK+LCG++LY GILMRYV  S+A+LGKQEDA+DFDITYYRSKDP+ PRL+QDILEEIEQ+ +FKYGALPHWGKNRN+AF   I +YK A EF+KVK MYDP  LFSSEWTDQ+LGL++G+  +K+GC LEGLCICS D HCAP KGYLC+ GK + +AKVC   S++
Sbjct:   17 KCLFLFV-IMVSCTPPEEPVKCSSKDSN--CTISNSYGSFPDRTICRAGNVAYPTTEKELVSIVSAAAEAKRKMKVITRFSHSIPKLVCPDGEDGLLISTKYLNHTLKIDAAAMTMTVESGVTLRQLINDAAKAGLALPHAPYWWGLTIGGLLGTGAHGSSLWGKGSSVHDYVVEMRMVSPAGAKEGYAKVRVLNESDK-DLDAAKVSLGVLGVISQVTFKLQPLFKRSISYVTKDDADLGDEAITFGKQHEFADVSWYPSQRKAVYRIDDRVSSNASGCGLYDFIPFRSTPSLALAFIRTTEETQESLRDADGKCLSGKLIVSTLQTAAYGLTNNGIIFTGYPVIGFHNRLQSSGTCLDSPEDSLITACPWDPRIKGEFFQQSTFSVGLSVVKSFIQDVQKLVALEPKALCGLELYSGILMRYVKASSAYLGKQEDAIDFDITYYRSKDPMAPRLYQDILEEIEQIALFKYGALPHWGKNRNLAFDGVIKRYKNAGEFLKVKNMYDPSRLFSSEWTDQILGLRNGVTTLKEGCALEGLCICSHDIHCAPSKGYLCRPGKTFQNAKVCTRVSSN 586
[Close]
BLAST of XM_017380067.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251U0I5 (L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA00013121} (1.1.3.8 {ECO:0000256|ARBA:ARBA00013121}))

HSP 1 Score: 827.78 bits (2137), Expect = 0.000e+0
Identity = 381/569 (66.96%), Postives = 466/569 (81.90%), Query Frame = 0
 
Query:   27 VLVRSSPPENPIRCTTFNSSTKCTITNSYGAFPDRSTCRAADAVYPTTEEELVSVVAMATKNGRKMKVATRFGHSIPKLVCADGDQGLLISTEYLNRTLHINESSGMMRVETGVTLKQLIEDAAKAGLALPYAPYWWGLTVGGLMGTGAHGSSLWGKGSSVHDYVVQLRIVTPAEHADGYARVRNLDDYNQL--EFNAAKVSLGVLGVISEVTLKLEPLFKRSVTYIEKSDSDLAEQVIEFGKQHEFADLIWYPSQRKAMYRMDDRVPYNTSGNAWIDFPGFQSTPSVALAILRLTEEAEESKADADSKCRRAKLITSALRLSGYGFTNNGIIFTGYPVIGYHNRLQASGACLTGPENALITACPWDHRIKALFYHQTTFSIGLSKVPDFIRDVQKLVHLAPKSLCGVDLYDGILMRYVTRSNAFLGKQEDAVDFDITYYRSKDPLRPRLFQDILEEIEQLGMFKYGALPHWGKNRNVAFHKAINKYKKAAEFIKVKRMYDPQGLFSSEWTDQVLGLKDGLMIVKQGCGLEGLCICSEDSHCAPDKGYLCQQGKVYPDAKVCALASTSS 593
             L   +PPE P++C+  N+ T CTITNSYG FPDRSTC AA+A YP++E+++VS+VA AT+  RKM+VATR+ HSIPKLVC DG+ GL+ISTE LNR + I++   ++ +E+GVTL+QLI++AAK+GLA PY PYWWGLT+GGL+GTGAHGS+LWG GSS+HDYVVQ+RIVT     +GYA+VR L++  +   E  AAKVSLGVLGVIS+VTLKL+PLFKRSVT++ K+D+DL++Q I FG+QHEFAD+ WYPSQ++ +YR+DDRV  N SGN   D PGF+STPS+AL ILR TEE +E+K DA  KCR  KL T+ L  S +G TN+GIIF GYPVIGY NRLQASG CL G ++A ITACPWD R+K LF+HQTTFSI LSK  DFI+DVQKLV +AP+SLCG+DLY+GILMRYVT SNA++GKQED++DFDITYYRSKDP  PRL++D+LEEIEQ+ +FKY  LPHWGKNRNVAF  AI KYKK+ EF+KVK  YDP GLFSSEWTDQVLGLK GL IVK+GC LEGLC+CSED HCAP KGYLC+ GKV+ DA+VC L   S+
Sbjct:   18 TLANGNPPEEPVKCS--NNFTNCTITNSYGVFPDRSTCHAAEAAYPSSEQDIVSIVANATRAKRKMRVATRYSHSIPKLVCPDGENGLIISTENLNRVIKIDKEKMLVTLESGVTLRQLIDEAAKSGLAFPYTPYWWGLTIGGLLGTGAHGSTLWGDGSSIHDYVVQMRIVTAGSEENGYAKVRTLEENGEFDGEMKAAKVSLGVLGVISQVTLKLQPLFKRSVTFLPKNDTDLSDQAIAFGRQHEFADITWYPSQKRVVYRIDDRVSSNVSGNGLWDHPGFRSTPSLALLILRSTEEDQEAKGDAAGKCRNGKLTTNTLIRSAFGLTNDGIIFKGYPVIGYQNRLQASGGCLKGLKDAEITACPWDPRVKGLFFHQTTFSIVLSKAKDFIQDVQKLVSIAPQSLCGIDLYNGILMRYVTGSNAYIGKQEDSLDFDITYYRSKDPKTPRLYEDVLEEIEQMAVFKYDGLPHWGKNRNVAFEGAIKKYKKSREFLKVKGKYDPLGLFSSEWTDQVLGLKGGLTIVKEGCALEGLCVCSEDIHCAPQKGYLCRPGKVFQDARVCTLVQVSN 584
[Close]
BLAST of XM_017380067.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438IFB9 (L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA00013121} (1.1.3.8 {ECO:0000256|ARBA:ARBA00013121}))

HSP 1 Score: 824.698 bits (2129), Expect = 0.000e+0
Identity = 384/558 (68.82%), Postives = 458/558 (82.08%), Query Frame = 0
 
Query:   32 SPPENPIRCTTFNSSTKCTITNSYGAFPDRSTCRAADAVYPTTEEELVSVVAMATKNGRKMKVATRFGHSIPKLVCADGDQGLLISTEYLNRTLHINESSGMMRVETGVTLKQLIEDAAKAGLALPYAPYWWGLTVGGLMGTGAHGSSLWGKGSSVHDYVVQLRIVTPAEHADGYARVRNLDDYNQLEFNAAKVSLGVLGVISEVTLKLEPLFKRSVTYIEKSDSDLAEQVIEFGKQHEFADLIWYPSQRKAMYRMDDRVPYNTSGNAWIDFPGFQSTPSVALAILRLTEEAEESKADADSKCRRAKLITSALRLSGYGFTNNGIIFTGYPVIGYHNRLQASGACLTGPENALITACPWDHRIKALFYHQTTFSIGLSKVPDFIRDVQKLVHLAPKSLCGVDLYDGILMRYVTRSNAFLGKQEDAVDFDITYYRSKDPLRPRLFQDILEEIEQLGMFKYGALPHWGKNRNVAFHKAINKYKKAAEFIKVKRMYDPQGLFSSEWTDQVLGLKDGLMIVKQGCGLEGLCICSEDSHCAPDKGYLCQQGKVYPDAKVCALA 589
            SPPE+PI+C + N  T CTITNSYGAFPDRS CRA+   YPTTEEEL+SVVA A  +  KMK  TRF HSIPKLVC DG+ GLLIST+YLNRTL+I+ S+  + +E+G TL+Q+I++AAKAGLALPYAPYWWGLT+GGL+ +GAHGSSLW KGSSVH+YV QLRI+TPA   +GY +VR LD  ++ + NAAKVS+GVLGVIS+ TL+L+PLFKRS+ Y  K+DSDLA+Q   FG +HEFAD+ WYPSQ KA+YR+DDRVP NTSGN   DF GF+ST S+ALA+LR TEE +E K +AD KC  AKL T AL  + YG TNNGIIFTGYPVIGYHNRLQASG CL   E+A ITACPWD R+K  F+HQTTFSI LS+V  FIRDVQKL+ + PK++CG++LY+GILMRYV  S A+LGKQEDA+DFDIT+YRSKDP+ PRL++DILEE+EQ+G+FKYG LPHW KNRN+AF  AI KYK A +F+KVK  YDP GLFSSEWTDQVLGLK G+ I K+GC LEGLCICSEDSHCAP+KGY C+ GKVY DA+VC L+
Sbjct:   23 SPPEDPIKCASKN--TNCTITNSYGAFPDRSRCRASAVAYPTTEEELISVVAKAAMDRTKMKAVTRFSHSIPKLVCTDGEDGLLISTKYLNRTLNIDPSAMTISIESGATLRQVIDEAAKAGLALPYAPYWWGLTIGGLLSSGAHGSSLWSKGSSVHEYVEQLRIITPAGRENGYVQVRTLDTSHE-DLNAAKVSIGVLGVISQATLRLQPLFKRSIDYTTKNDSDLADQAATFGSRHEFADITWYPSQGKAVYRIDDRVPSNTSGNGLNDFTGFRSTSSLALALLRTTEENQELKGNADGKCTAAKLTTLALSRAAYGLTNNGIIFTGYPVIGYHNRLQASGTCLDSIEDARITACPWDPRVKGQFFHQTTFSIALSRVRSFIRDVQKLLEIEPKAMCGLELYNGILMRYVKASTAYLGKQEDALDFDITHYRSKDPMTPRLYEDILEEVEQMGLFKYGGLPHWAKNRNLAFDGAIKKYKNAWKFLKVKERYDPLGLFSSEWTDQVLGLKKGVTIFKKGCALEGLCICSEDSHCAPEKGYFCRPGKVYKDARVCTLS 577
[Close]
BLAST of XM_017380067.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835TKA7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9687978.1}))

HSP 1 Score: 823.928 bits (2127), Expect = 0.000e+0
Identity = 384/579 (66.32%), Postives = 467/579 (80.66%), Query Frame = 0
 
Query:   13 LRDALWKCLLLLMCVLVRSSPPENPIRCTTFNSSTKCTITNSYGAFPDRSTCRAADAVYPTTEEELVSVVAMATKNGRKMKVATRFGHSIPKLVCADGDQGLLISTEYLNRTLHINESSGMMRVETGVTLKQLIEDAAKAGLALPYAPYWWGLTVGGLMGTGAHGSSLWGKGSSVHDYVVQLRIVTPAEHADGYARVRNLDDYNQLEFNAAKVSLGVLGVISEVTLKLEPLFKRSVTYIEKSDSDLAEQVIEFGKQHEFADLIWYPSQRKAMYRMDDRVPYNTSGNAWIDFPGFQSTPSVALAILRLTEEAEESKADADSKCRRAKLITSALRLSGYGFTNNGIIFTGYPVIGYHNRLQASGACLTGPENALITACPWDHRIKALFYHQTTFSIGLSKVPDFIRDVQKLVHLAPKSLCGVDLYDGILMRYVTRSNAFLGKQEDAVDFDITYYRSKDPLRPRLFQDILEEIEQLGMFKYGALPHWGKNRNVAFHKAINKYKKAAEFIKVKRMYDPQGLFSSEWTDQVLGLKDGLMIVKQGCGLEGLCICSEDSHCAPDKGYLCQQGKVYPDAKVCALAST 591
            LR  L    LLL+  +V  SPPEN I+C++ N  T CTITNSYG FPDRS C+AA+ VYPTTEEEL+S+VA ATK  RK+KVATR+ HSIPKLVC DG  GLLIST YLNRTL I+  S  M VE+GVTL+QLI +AAKAGLALPY+PYWWGLT+GGL+ TGAHGS+LWGKGS++HDYVV L IV+P    DGYARVR L++ N  E +AA+VSLGVLGVIS+VTL+L+PLFKRS++Y+ KSD DL +QV  FG+QHEFAD+ WYPSQ KA+YR+DDRV  NTSGN   D+  F+ST S+ LA++R TE+ +ES  D D KC  AKLITS L    YG TNNG++FTGYP+IGYHNRLQ+SG CL  PE+A+ITACPWD RIK  ++ Q TFSI LS V  FI+DVQKLV L P++LCG++ Y+GILMRYV  S+A+LGK++DA+DFDIT+YR+KDP +PRL++DILEEIEQL +FKYG LPHWGKNRN+ F+ A+ KYKKA  F++VK  YDP GLFS+EWTDQVLGLK  + I+K+GC LEGLCICS+D HCAP KGYLC+ GK+Y DA+VCAL +T
Sbjct:   11 LRILLSNSCLLLVVFMVDCSPPENHIKCSSAN--TNCTITNSYGTFPDRSICQAANVVYPTTEEELISIVAEATKAKRKVKVATRYSHSIPKLVCPDGQNGLLISTNYLNRTLEIDVQSMTMSVESGVTLRQLINEAAKAGLALPYSPYWWGLTIGGLLSTGAHGSTLWGKGSAIHDYVVALTIVSPGGSKDGYARVRRLNESNSSELDAARVSLGVLGVISKVTLQLQPLFKRSISYLVKSDVDLGDQVASFGRQHEFADISWYPSQGKAVYRVDDRVSSNTSGNGIYDYIPFRSTLSLGLAVIRATEDTQESMKDPDGKCASAKLITSTLIRMAYGLTNNGLVFTGYPIIGYHNRLQSSGTCLDSPEDAMITACPWDSRIKGEYFFQATFSISLSVVKSFIQDVQKLVKLEPRALCGLEQYNGILMRYVKASSAYLGKEDDALDFDITFYRNKDPAKPRLYEDILEEIEQLAVFKYGGLPHWGKNRNLVFNGALEKYKKAGAFLRVKEKYDPLGLFSNEWTDQVLGLKGEVNIIKEGCALEGLCICSQDIHCAPGKGYLCRPGKIYQDARVCALVTT 587
[Close]
BLAST of XM_017380067.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9S3D0 (L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA00013121} (1.1.3.8 {ECO:0000256|ARBA:ARBA00013121}))

HSP 1 Score: 823.928 bits (2127), Expect = 0.000e+0
Identity = 386/564 (68.44%), Postives = 456/564 (80.85%), Query Frame = 0
 
Query:   28 LVRSSPPENPIRCTTFNSSTKCTITNSYGAFPDRSTCRAADAVYPTTEEELVSVVAMATKNGRKMKVATRFGHSIPKLVCADGDQGLLISTEYLNRTLHINESSGMMRVETGVTLKQLIEDAAKAGLALPYAPYWWGLTVGGLMGTGAHGSSLWGKGSSVHDYVVQLRIVTPAEHADGYARVRNLDDYNQLEFNAAKVSLGVLGVISEVTLKLEPLFKRSVTYIEKSDSDLAEQVIEFGKQHEFADLIWYPSQRKAMYRMDDRVPYNTSGNAWIDFPGFQSTPSVALAILRLTEEAEESKADADSKCRRAKLITSALRLSGYGFTNNGIIFTGYPVIGYHNRLQASGACLTGPENALITACPWDHRIKALFYHQTTFSIGLSKVPDFIRDVQKLVHLAPKSLCGVDLYDGILMRYVTRSNAFLGKQEDAVDFDITYYRSKDPLRPRLFQDILEEIEQLGMFKYGALPHWGKNRNVAFHKAINKYKKAAEFIKVKRMYDPQGLFSSEWTDQVLGLKDGLMIVKQGCGLEGLCICSEDSHCAPDKGYLCQQGKVYPDAKVCALAST 591
            +V S+PPE+PI CT+ N  T CTITNSYG FPDRS C+AA+  YPTTEEEL+SVVA ATK  RKMKVATR+ HSIPKLVC DG  GLLIST+ LN  L I+  S  M VE+GVTL+Q+I++ A AGLALPYAPYWWGLT+GGL+GTGAHGS+LWG GSSVHDYVV L IV+P    +GYA VR LD+ N  EFNAAKVSLGVLGVIS+VTLKL+PLFKRS+TY+ K D+DL +Q   FG QHEFAD+ WYP+Q KA+YR+DDR+  NTSGN   DF  F+ST S+ L+++R TEE +E+  D + +C  A+L T  L  + YG TN GI+FTGYPVIG+HNRLQ+SG CL   E+ALITACPWD RIK  ++HQTTFSI LS V  FI+DVQ+LV L PK LC V+ Y+GILMRYV  S A+LGKQEDA+DFDITYYRSKDPL PR+F+DILEEIEQ+ +FKYGALPHWGKNRN AF  AI +YK A EF++VK+MYDP GLFSSEWTDQVLGLK+GL+IVK+GC LEGLCICSEDSHCAP KGYLC+ GKVY +A+VC L +T
Sbjct:   19 IVISTPPEDPIECTSRN--TNCTITNSYGTFPDRSICQAANVAYPTTEEELISVVANATKAKRKMKVATRYSHSIPKLVCPDGKDGLLISTKNLNHVLSIDVQSMTMTVESGVTLRQIIDEGANAGLALPYAPYWWGLTIGGLLGTGAHGSTLWGIGSSVHDYVVGLTIVSPGGPENGYANVRILDEKNS-EFNAAKVSLGVLGVISKVTLKLQPLFKRSITYVAKDDTDLGDQATSFGLQHEFADITWYPTQSKAIYRIDDRISSNTSGNGLYDFIPFRSTLSLGLSVIRATEENQEALGDVEGRCISARLTTGTLLTAAYGLTNRGILFTGYPVIGFHNRLQSSGTCLDSREDALITACPWDSRIKGEYFHQTTFSISLSNVKSFIQDVQQLVKLEPKGLCTVEQYNGILMRYVKASTAYLGKQEDAIDFDITYYRSKDPLTPRMFEDILEEIEQIAVFKYGALPHWGKNRNAAFSGAITRYKNAGEFLRVKQMYDPTGLFSSEWTDQVLGLKEGLIIVKEGCALEGLCICSEDSHCAPKKGYLCRPGKVYQNARVCTLVTT 579
Match NameStatsDescription
A0A1S4B1A6E-Value: 0.000e+0, PID: 68.41L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA0001... [more]
A0A6J1A099E-Value: 0.000e+0, PID: 67.07L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA0001... [more]
A0A1J6J1X9E-Value: 0.000e+0, PID: 68.84L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA0001... [more]
A0A1U7YAP2E-Value: 0.000e+0, PID: 69.05L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA0001... [more]
A0A6A1W3C4E-Value: 0.000e+0, PID: 68.78L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA0001... [more]
A0A061DT84E-Value: 0.000e+0, PID: 66.55L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA0001... [more]
A0A251U0I5E-Value: 0.000e+0, PID: 66.96L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA0001... [more]
A0A438IFB9E-Value: 0.000e+0, PID: 68.82L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA0001... [more]
A0A835TKA7E-Value: 0.000e+0, PID: 66.32(Uncharacterized protein {ECO:0000313|EMBL:KAF9687... [more]
B9S3D0E-Value: 0.000e+0, PID: 68.44L-gulonolactone oxidase {ECO:0000256|ARBA:ARBA0001... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.