XM_017382857.1

Resource Type: 
Polypeptide
Name: 
XM_017382857.1
Identifier: 
XM_017382857.1-protein
Sequence: 
MDELLNAYSTAALDEEDKDDDGKTTAIAPPPHPPPSKRPKPDYSFPTYKK
PNQTKHVPCIAPVSHNYNNISKQTKSIPCITHVPQNYNYNNIYNHNYYNN
HRPEAPPPMLPGRYVSKRERAAAAATTPPDPLTTTLITPSSSSAIGSISV
MDIRNDILLSLRQQRKGHSLNGKPPENLSLSLTGHDKAVNALQWSSTHSH
LLASAGMDHTICVWNPWSKNERKARVLSHHTAAVKDIKWSELGLSLLSCG
YDCSSRLFDVEKGLEIHMFKEDQVVGVVKFHPNNSNLFLSGGSKGVLKLW
DIRTQKAAHQYVRGLGPILDVEFINCASQFVSSSDVSKGNVTENSILVWD
VSRQVPLSNQVYAEAYTCPSIKCHTSEQYFVAQSNGNYIAIFSAKAPFKL
DRYRRYESHGVSGFPVRCDFSLDGEQLASGSSDGCIYFYNSRSTELIKKV
KLYEQACIDVAFHPVMPNVIASCSWNGEISVLE
Sequence Length: 
483
Sequence Checksum: 
b580ae677ee5025a4ecc2370d3554e7e
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017382857.1, derives from mRNA, XM_017382857.1.
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Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017382857.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017382857.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BSK6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA71852.1}) (Fragment))

HSP 1 Score: 578.556 bits (1490), Expect = 0.000e+0
Identity = 292/483 (60.46%), Postives = 359/483 (74.33%), Query Frame = 0
 
Query:    2 DELLNAYSTAALDEEDKDDDGKTTAIAPPPHPPPSKRPKPDYSFPTYKKPNQTKHVPCIAPVSHNYNNISKQTKSIPCITHVPQNYNYNNIYNHNYYNNHRPEAPPPMLPGRYVSKRERAAAAAT-TPPDPLTTTLITPSSSSAIGSISVMDIRNDILLSLRQQRKGHSLNGKPPENLSLSLTGHDKAVNALQWSSTHSHLLASAGMDHTICVWNPWSKNERKARVLSHHTAAVKDIKWSELGLSLLSCGYDCSSRLFDVEKGLEIHMFKEDQVVGVVKFHPNNSNLFLSGGSKGVLKLWDIRTQKAAHQYVRGLGPILDVEFINCASQFVSSSDVSKGNVTENSILVWDVSRQVPLSNQVYAEAYTCPSIKCHTSEQYFVAQSNGNYIAIFSAKAPFKLDRYRRYESHGVSGFPVRCDFSLDGEQLASGSSDGCIYFYNSRSTELIKKVKLYEQACIDVAFHPVMPNVIASCSWNGEISVLE 483
            D L NAYSTA+ D+E + +          P  PPSKR KPD                         N +S  TK +P             +   N+  N   EAP   +PGRY+SKRERA  A+    PDP+  + +T  +S  +GSIS  D+ +DIL  LR Q KG ++ G+  E LS++L  H KAVN +QWS++H+HLLASAGMDHTIC+WN WS++++KARVL++H+AAVKD+KWS+ GL +LSCGYDCSSRL DVEKGLE  +FKEDQVVGV+KFHP+N NLFLSGGSKG ++LWDIRT K  H+Y+RGLGPILDVEF N A QF+SSSDVSK NV+ENSI+VWD+SRQ+PLSNQVY EAYTCP I+ H  + YFVAQSNGNYIAIFS+K PFKL++Y+RYESH VSGFP++C+FSLDGE+LASGSSDGCIYFYNSRS+ELIKK+K+YEQACIDVAFHP++PNVIASCSWNG++SV E
Sbjct:    1 DLLCNAYSTASDDDEPERER---------PVLPPSKRFKPD-------------------------NPLSFLTKPLP-------------VLRQNHSPNLSTEAP---IPGRYISKRERAVLASVPMVPDPIPPSPVT--TSPVLGSISDSDLPHDILSLLRHQAKGRAMLGQISERLSVALNSHMKAVNVVQWSASHAHLLASAGMDHTICIWNVWSRDQKKARVLNYHSAAVKDVKWSQQGLFVLSCGYDCSSRLIDVEKGLETQVFKEDQVVGVIKFHPDNPNLFLSGGSKGFVRLWDIRTGKVVHEYIRGLGPILDVEFNNDAKQFISSSDVSKSNVSENSIIVWDISRQIPLSNQVYVEAYTCPCIRRHPFDPYFVAQSNGNYIAIFSSKPPFKLEKYKRYESHSVSGFPIKCNFSLDGEKLASGSSDGCIYFYNSRSSELIKKIKVYEQACIDVAFHPLLPNVIASCSWNGDVSVFE 431    
BLAST of XM_017382857.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A200QBW9 ((WD40 repeat {ECO:0000313|EMBL:OVA07959.1}))

HSP 1 Score: 556.984 bits (1434), Expect = 0.000e+0
Identity = 273/484 (56.40%), Postives = 349/484 (72.11%), Query Frame = 0
 
Query:    1 MDELLNAYSTAALDEEDKDDDGKTTAIAPPPHPPPSKRPKPDYSFPTYKKPNQTKHVPCIAPVSHNYNNISKQTKSIPCITHVPQNYNYNNIYNHNYYNNHRPEAPPPMLPGRYVSKRERAAAAATTPPDP-LTTTLITPSSSSAIGSISVMDIRNDILLSLRQQRKGHSLNGKPPENLSLSLTGHDKAVNALQWSSTHSHLLASAGMDHTICVWNPWSKNERKARVLSHHTAAVKDIKWSELGLSLLSCGYDCSSRLFDVEKGLEIHMFKEDQVVGVVKFHPNNSNLFLSGGSKGVLKLWDIRTQKAAHQYVRGLGPILDVEFINCASQFVSSSDVSKGNVTENSILVWDVSRQVPLSNQVYAEAYTCPSIKCHTSEQYFVAQSNGNYIAIFSAKAPFKLDRYRRYESHGVSGFPVRCDFSLDGEQLASGSSDGCIYFYNSRSTELIKKVKLYEQACIDVAFHPVMPNVIASCSWNGEISVLE 483
            MD L NAYS A+    D+D+D K  +      PPP+KR +P+                       N ++  +   S+ C             Y   Y ++ + EAP   + GRY+SKRERA + +    D  L +T+IT   S  +GSIS  D+R+DIL SLR Q KG + +G+ PE L+++L  H KAVNA+QWS TH+HLLASAGMDH +C+WN WS+ ++KA V ++HTAAVKD++WS+ GLSLLSCGYDCSSRL DVEKG+E  +FKE+QVVGV+KFHP NSNLFLSGGSKG ++LWDIR  +   +YVRGLGPILDV+F   A  F+SSSD+SK N++ENSI+VWDVSRQVPLSNQ+Y EAYTCP I+ H  + +FVAQSNGNYIAIFS++ PF+LD+Y+RYE HGVSGFP++C F+LDGE+LASGSSDGCIY Y+ RS EL++K+K YEQAC DVAFHP +PNVIASCSWNG++S+ E
Sbjct:    1 MDLLCNAYSAAS----DEDEDEKKIS----SQPPPTKRMRPE-----------------------NRSSFQQIMPSVQC-------------YPKFYSSDQQKEAP---IAGRYISKRERAMSGSLAVSDVNLPSTVIT---SPVVGSISDSDVRSDILSSLRSQAKGSAHHGRTPERLTMTLNSHTKAVNAIQWSPTHAHLLASAGMDHAVCIWNVWSRGQKKACVFNYHTAAVKDVRWSQQGLSLLSCGYDCSSRLVDVEKGIETQLFKENQVVGVIKFHPENSNLFLSGGSKGFIRLWDIRVGRTVQEYVRGLGPILDVDFSIDAKHFISSSDISKTNISENSIIVWDVSRQVPLSNQIYVEAYTCPCIRYHPFDPFFVAQSNGNYIAIFSSRPPFRLDKYKRYEKHGVSGFPIKCSFNLDGERLASGSSDGCIYLYDYRSAELVRKIKAYEQACTDVAFHPCIPNVIASCSWNGDVSIFE 434    
BLAST of XM_017382857.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZY79 (NAD(P)H dehydrogenase (quinone) {ECO:0000256|ARBA:ARBA00012648} (1.6.5.2 {ECO:0000256|ARBA:ARBA00012648}))

HSP 1 Score: 553.132 bits (1424), Expect = 0.000e+0
Identity = 257/374 (68.72%), Postives = 312/374 (83.42%), Query Frame = 0
 
Query:  110 LPGRYVSKRERAAAAATTPPDPLTTTLITPSSSSAIGSISVMDIRNDILLSLRQQRKGHSLNGKPPENLSLSLTGHDKAVNALQWSSTHSHLLASAGMDHTICVWNPWSKNERKARVLSHHTAAVKDIKWSELGLSLLSCGYDCSSRLFDVEKGLEIHMFKEDQVVGVVKFHPNNSNLFLSGGSKGVLKLWDIRTQKAAHQYVRGLGPILDVEFINCASQFVSSSDVSKGNVTENSILVWDVSRQVPLSNQVYAEAYTCPSIKCHTSEQYFVAQSNGNYIAIFSAKAPFKLDRYRRYESHGVSGFPVRCDFSLDGEQLASGSSDGCIYFYNSRSTELIKKVKLYEQACIDVAFHPVMPNVIASCSWNGEISVLE 483
            L G Y  + E+    +   PDP+    +T  +S  IGSIS  D+  DIL SLR Q KG ++ G+  E LS+SL  H KAVN +QWS++H+HLLASAGMDHTIC+WN WS++++KARVL++H+AAVKD+KWS+ GL +LSCGYDCSSRL DVEKGLE  +FKEDQVVGV+KFHP+N N+FLSGG KG L+LWDIRT K   +Y+RGLGPILDVEF N A QF+SSSDVSK NV+ENSI+VWD+SRQ+PLSNQVY EAYTCP I+CH  + YFVAQSNGNYIAIFS+K PFKL++++RYESH VSGFP++C+FSLDGE+LASGSSDGCIYFYNSRS+ELIKK+K YEQACIDVAFHP++PNVIASCSWNG++SV E
Sbjct:  201 LAGTYRRESEQYWLQSQGFPDPIPLPPVT--TSPVIGSISDSDLPRDILSSLRHQAKGRAMLGQISERLSVSLNSHMKAVNVVQWSASHAHLLASAGMDHTICIWNVWSRDQKKARVLNYHSAAVKDVKWSQQGLFVLSCGYDCSSRLIDVEKGLETQVFKEDQVVGVIKFHPDNPNIFLSGGLKGFLRLWDIRTGKVVQEYIRGLGPILDVEFTNDAKQFISSSDVSKSNVSENSIIVWDLSRQIPLSNQVYVEAYTCPCIRCHPFDPYFVAQSNGNYIAIFSSKPPFKLEKFKRYESHSVSGFPIKCNFSLDGEKLASGSSDGCIYFYNSRSSELIKKIKAYEQACIDVAFHPLLPNVIASCSWNGDVSVFE 572    
BLAST of XM_017382857.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PTA2 ((WD repeat-containing protein {ECO:0000313|EMBL:PSR96324.1}))

HSP 1 Score: 549.666 bits (1415), Expect = 0.000e+0
Identity = 287/489 (58.69%), Postives = 344/489 (70.35%), Query Frame = 0
 
Query:    1 MDELLNAYSTAALDEEDKDDDGKTTAIAPPPHPPPSKRPKPDYSFPTYKKPNQTKHVPCIAPVSHNYNNISKQTKSIPCITHVPQNYNYNNIYNHNYYNNHRPEAPPPMLPGRYVSKRERAAAAAT------TPPDPLTTTLITPSSSSAIGSISVMDIRNDILLSLRQQRKGHSLNGKPPENLSLSLTGHDKAVNALQWSSTHSHLLASAGMDHTICVWNPWSKNERKARVLSHHTAAVKDIKWSELGLSLLSCGYDCSSRLFDVEKGLEIHMFKEDQVVGVVKFHPNNSNLFLSGGSKGVLKLWDIRTQKAAHQYVRGLGPILDVEFINCASQFVSSSDVSKGNVTENSILVWDVSRQVPLSNQVYAEAYTCPSIKCHTSEQYFVAQSNGNYIAIFSAKAPFKLDRYRRYESHGVSGFPVRCDFSLDGEQLASGSSDGCIYFYNSRSTELIKKVKLYEQACIDVAFHPVMPNVIASCSWNGEISVLE 483
            MD L NAYS A+ D+E++ + G+   +      PPSKRPKPD+   +Y KP     + C  PV                            IY          EAP   +PGRY+SKRERA  A+        PPDP TT           GSI   DI +DIL S+R Q KG    G+  E LS++L+GH KAVN +QWS++H HLLASAGMDH IC+WN WS +++KA VL++H AAV D+KWS  GL LLSCGYDCSSRL DVE GLE  +FKEDQVV V+KFHPNNSNLFLSGGSKG L+LWDIR  K  ++Y RGLGPILDVEF     QF+SSSDVSKGNV+ENSI++WD+SRQVPLSNQVY EAYTCP I+ H  + YFVAQSNGNYIAIFS++ PFKLD+Y+RYESHGVSGFP++C+F+LDG++L SGSSDGCIYFYN+RSTELIKK+K YEQACIDVAFHP M NV+ASCSW+G++ V E
Sbjct:    1 MDLLCNAYSNASDDDEEEPEHGRPGPL------PPSKRPKPDHPV-SYPKPLPDMPLLCPQPV----------------------------IYPPT-------EAP---VPGRYISKRERAVLASGPRVPDPNPPDPATT---------PPGSILDSDIPHDILSSMRHQTKGRG-RGQISERLSVALSGHSKAVNVVQWSTSHGHLLASAGMDH-ICIWNVWSTDQKKAHVLNYHNAAVNDVKWSPQGLFLLSCGYDCSSRLIDVETGLETQVFKEDQVVRVIKFHPNNSNLFLSGGSKGFLRLWDIRVGKVVNEYFRGLGPILDVEFTIDTKQFISSSDVSKGNVSENSIIIWDISRQVPLSNQVYVEAYTCPCIRSHPRDSYFVAQSNGNYIAIFSSRPPFKLDKYKRYESHGVSGFPIKCNFNLDGDKLVSGSSDGCIYFYNTRSTELIKKIKAYEQACIDVAFHPTMSNVVASCSWSGDVWVFE 433    
BLAST of XM_017382857.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1KCL2 ((Transducin/WD40 repeat-like superfamily protein {ECO:0000313|EMBL:PWA34510.1}))

HSP 1 Score: 548.895 bits (1413), Expect = 0.000e+0
Identity = 284/486 (58.44%), Postives = 345/486 (70.99%), Query Frame = 0
 
Query:    1 MDELLNAYSTAALDEEDKDDDGKTTAIAPPPHPPPSKRPKPDYSFPTYKKPNQTKHVPCIAPVSHNYNNISKQTKSIPCITHVPQNYNYNNIYNHNYYNNHRPEAPPPMLPGRYVSKRERAAAAA---TTPPDPLTTTLITPSSSSAIGSISVMDIRNDILLSLRQQRKGHSLNGKPPENLSLSLTGHDKAVNALQWSSTHSHLLASAGMDHTICVWNPWSKNERKARVLSHHTAAVKDIKWSELGLSLLSCGYDCSSRLFDVEKGLEIHMFKEDQVVGVVKFHPNNSNLFLSGGSKGVLKLWDIRTQKAAHQYVRGLGPILDVEFINCASQFVSSSDVSKGNVTENSILVWDVSRQVPLSNQVYAEAYTCPSIKCHTSEQYFVAQSNGNYIAIFSAKAPFKLDRYRRYESHGVSGFPVRCDFSLDGEQLASGSSDGCIYFYNSRSTELIKKVKLYEQACIDVAFHPVMPNVIASCSWNGEISVLE 483
            MD L NAYSTA    ED+D++ +  A      PPP KR KPD  FP                           ++ +P +T              N   N   E P   + GRY+SKRERA  A+   T+  DP T++  +P      GSIS   IR DI  SLR + +G++ +G+  E +S +L  H KAVNA++WS  H HLLASAGMD +ICVWN WS  ++KARV + HTAAVKDIKWSE G SLLSCGYDCS+RL DVEKGLE  +FKEDQVVGVVKFHPNNSNLFLSGGSKG ++LWDIRT+ A +QY+RGLGPILD+EF N   QF+SSSD SK N++ENSI+VWDVSRQVPLSNQ+Y EAYTCP I+ H  +QYFVAQSNGNYIAIFS+K P++LD+Y+RYE HGVSGFPV+C+FS DG++LASGSSDG IYFYN+++ +LIKK+K+YEQ C+DVAFHPVM N+IASCSWNGEISV E
Sbjct:    1 MDLLYNAYSTA----EDEDEENEKHA------PPPLKRAKPD--FP------------------------HTSSRRLPAVTL-------------NQSQNITTEVP---IAGRYISKRERAIMASAPQTSNADPPTSSACSPVQ----GSISDSFIRKDIYSSLRNRTEGYTNSGRISERVSTTLMSHKKAVNAIEWSKNHPHLLASAGMDSSICVWNVWSSEQKKARVFNIHTAAVKDIKWSEQGYSLLSCGYDCSTRLIDVEKGLETCVFKEDQVVGVVKFHPNNSNLFLSGGSKGGIRLWDIRTRNAVNQYLRGLGPILDLEFTNDTRQFISSSDESKSNISENSIIVWDVSRQVPLSNQIYVEAYTCPCIRHHPYDQYFVAQSNGNYIAIFSSKPPYRLDKYKRYECHGVSGFPVKCNFSPDGKKLASGSSDGYIYFYNAKTCDLIKKIKVYEQTCVDVAFHPVMSNIIASCSWNGEISVFE 430    
BLAST of XM_017382857.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834ZL54 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8409434.1}))

HSP 1 Score: 546.584 bits (1407), Expect = 0.000e+0
Identity = 260/391 (66.50%), Postives = 317/391 (81.07%), Query Frame = 0
 
Query:   99 NNHRPEAPPPMLPGRYVSKRERAAAAATTP-PDPLTTTLITPSS-----SSAIGSISVMDIRNDILLSLRQQRKGHSLNGKPPENLSLSLTGHDKAVNALQWSSTHSHLLASAGMDHTICVWNPWSKNERKARVLSHHTAAVKDIKWSELGLSLLSCGYDCSSRLFDVEKGLEIHMFKEDQVVGVVKFHPNNSNLFLSGGSKGVLKLWDIRTQKAAHQYVRGLGPILDVEFINCASQFVSSSDVSKGNVTENSILVWDVSRQVPLSNQVYAEAYTCPSIKCHTSEQYFVAQSNGNYIAIFSAKAPFKLDRYRRYESHGVSGFPVRCDFSLDGEQLASGSSDGCIYFYNSRSTELIKKVKLYEQACIDVAFHPVMPNVIASCSWNGEISVLE 483
            N  + EAP P + GRYVSKRERA +AA +  PD   ++ I PS      SSA+GSIS  D+  DIL SLR+Q KG +  G+ PE LS++L GH KAVN++QWS TH+HLLASAGMDHT+C+WN WS +++KARV S+H AAVKD+KWS+ GLSLLSCGYD SSRL DVEKG+E  +FKEDQVVGV+KFHP NSNLFLSGGSKG+L++WDIR  K   +Y+RGLG ILD+EF      F+SSSDVS+GNV+E SI+VWD  RQVPLSNQVY EAYTCP ++ H  + +F+AQSNGNYIAIFS+  PFKLD+Y+RYE+HGVSGFP++C FSLDGE+LASGSSDGCIYFY  RST+L++K++ +E+ACIDVAFHP MPNVIASCSWNG+ISV E
Sbjct:   78 NPQKREAPIP-IAGRYVSKRERAISAADSRVPDLALSSTIIPSPDAFFLSSAVGSISDSDLPCDILSSLRRQAKGKTQLGQIPERLSVALNGHTKAVNSIQWSPTHAHLLASAGMDHTVCIWNVWSTDQKKARVFSYHNAAVKDVKWSQQGLSLLSCGYDYSSRLTDVEKGVETQIFKEDQVVGVIKFHPGNSNLFLSGGSKGLLRVWDIRVGKVVQEYIRGLGSILDIEFSIDTKHFISSSDVSRGNVSEKSIIVWDYLRQVPLSNQVYVEAYTCPCVRYHPFDPFFIAQSNGNYIAIFSSSPPFKLDKYKRYENHGVSGFPIKCSFSLDGEKLASGSSDGCIYFYTCRSTKLLRKIQAFEEACIDVAFHPRMPNVIASCSWNGDISVFE 467    
BLAST of XM_017382857.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7YMD2 ((WD repeat-containing protein 25 isoform X1 {ECO:0000313|RefSeq:XP_010240995.1}))

HSP 1 Score: 538.495 bits (1386), Expect = 0.000e+0
Identity = 280/486 (57.61%), Postives = 341/486 (70.16%), Query Frame = 0
 
Query:    1 MDELLNAYSTAALDEEDKDDDGKTTAIAPPPHPPPSKRPKPDYSFPTYKKPNQTKHVPCIAPVSHNYNNISKQTKSIPCITHVPQNYNYNNIYNHNYYNNHRPEAPPPMLPGRYVSKRERAAAAA---TTPPDPLTTTLITPSSSSAIGSISVMDIRNDILLSLRQQRKGHSLNGKPPENLSLSLTGHDKAVNALQWSSTHSHLLASAGMDHTICVWNPWSKNERKARVLSHHTAAVKDIKWSELGLSLLSCGYDCSSRLFDVEKGLEIHMFKEDQVVGVVKFHPNNSNLFLSGGSKGVLKLWDIRTQKAAHQYVRGLGPILDVEFINCASQFVSSSDVSKGNVTENSILVWDVSRQVPLSNQVYAEAYTCPSIKCHTSEQYFVAQSNGNYIAIFSAKAPFKLDRYRRYESHGVSGFPVRCDFSLDGEQLASGSSDGCIYFYNSRSTELIKKVKLYEQACIDVAFHPVMPNVIASCSWNGEISVLE 483
            MD L NAYS AA DEED DD+ K          PP KR + +                          N + Q +S+P   + P NY+           N R EA    +PGRY+SKRERA +A     + PDP +  + +P     IGSIS  D+   IL SLR + KGH+ +G+ PE LS  LT H K VN++QWS TH HLLASAGMDH +C+WN WSK+++KAR+ ++H AAVKD++W   G SLLSCGYDCSSRL D+EKG+E  +FKEDQVVGV+KFHP NSNLFLSGGSKG LKLWDIR  KA   Y R LGP+LDV+F   A  F+SSSD+S+ NV+ENSI+VWDVSRQVPLSNQVY EAYTCP ++ H  +  F+AQS+GNYIAIFS+  PFKLD+Y+RYESHGVSGFP++C+FSLDGE LASGSSDGCIYFY+ RS++LI+K+K YEQAC+DVAFHP +PNVIASC WNGEISV E
Sbjct:    1 MDLLFNAYS-AASDEED-DDEKKLVR-------PPLKRIRRE--------------------------NPTLQLQSLP--EYCPNNYS-----------NQRQEAS---IPGRYISKRERAISAVASRVSEPDPSSMVITSP----VIGSISESDVPFGILSSLRCKGKGHAQHGQTPERLSKVLTCHTKPVNSIQWSPTHDHLLASAGMDHMVCIWNVWSKSQQKARIFNYHNAAVKDVRWLPQGFSLLSCGYDCSSRLVDIEKGIETQIFKEDQVVGVIKFHPENSNLFLSGGSKGHLKLWDIRVGKAMCNYNRNLGPVLDVDFSYDAKHFISSSDISRSNVSENSIIVWDVSRQVPLSNQVYVEAYTCPCVRYHPFDPVFIAQSHGNYIAIFSSNPPFKLDKYKRYESHGVSGFPIKCNFSLDGETLASGSSDGCIYFYSYRSSDLIRKIKAYEQACLDVAFHPHVPNVIASCGWNGEISVFE 431    
BLAST of XM_017382857.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6H2H0 ((Uncharacterized protein {ECO:0000313|EMBL:CCB46450.1}))

HSP 1 Score: 536.954 bits (1382), Expect = 0.000e+0
Identity = 250/375 (66.67%), Postives = 306/375 (81.60%), Query Frame = 0
 
Query:  110 LPGRYVSKRERAAAA-ATTPPDPLTTTLITPSSSSAIGSISVMDIRNDILLSLRQQRKGHSLNGKPPENLSLSLTGHDKAVNALQWSSTHSHLLASAGMDHTICVWNPWSKNERKARVLSHHTAAVKDIKWSELGLSLLSCGYDCSSRLFDVEKGLEIHMFKEDQVVGVVKFHPNNSNLFLSGGSKGVLKLWDIRTQKAAHQYVRGLGPILDVEFINCASQFVSSSDVSKGNVTENSILVWDVSRQVPLSNQVYAEAYTCPSIKCHTSEQYFVAQSNGNYIAIFSAKAPFKLDRYRRYESHGVSGFPVRCDFSLDGEQLASGSSDGCIYFYNSRSTELIKKVKLYEQACIDVAFHPVMPNVIASCSWNGEISVLE 483
            + GRY+SKRER+  + A +PP P        S+S  +GSIS  D+  DIL SLR Q KG S  G+  E LS+ L  H K+VN +QWS TH+HLLASAGMDH IC+WN WS++++KAR  S+H AAVKD+KW + GLS+LSCGYDCSSRL DVEKGL+  +F EDQVVGV+K HP+NSNLFLSGGSKG L+LWDIRT K  H+Y+RGLGPILD+EF   A QF+SSSDVS  N++ENSI+VWDVSRQVPLSNQVY EAYTCP I+CH S+ +F+AQSNGNYIAIFS+  PFKLD+Y+RYE+HGVSGFP++C+FSLDGE+LASGSSDGCIY Y+ RS+EL++K+K YEQACIDVAFHP++PNVIA+C W+G +SV E
Sbjct:   48 IAGRYISKRERSLLSPALSPPLPNPAA----SASPVMGSISDSDLPRDILSSLRHQAKGRSQLGRISERLSVDLKSHKKSVNTIQWSPTHAHLLASAGMDHAICIWNAWSRDQKKAREFSYHNAAVKDVKWLQQGLSVLSCGYDCSSRLIDVEKGLQTQIFTEDQVVGVIKLHPDNSNLFLSGGSKGRLRLWDIRTGKVVHEYIRGLGPILDIEFTVNAKQFISSSDVSGSNMSENSIVVWDVSRQVPLSNQVYVEAYTCPCIRCHPSDPFFIAQSNGNYIAIFSSCPPFKLDKYKRYENHGVSGFPIKCNFSLDGEKLASGSSDGCIYLYDYRSSELVQKIKAYEQACIDVAFHPLLPNVIAACGWDGAVSVFE 418    
BLAST of XM_017382857.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A3AGG6 ((Indole-3-acetic acid-amido synthetase GH3.6-like {ECO:0000313|EMBL:KAE8703206.1}))

HSP 1 Score: 536.569 bits (1381), Expect = 0.000e+0
Identity = 253/384 (65.89%), Postives = 306/384 (79.69%), Query Frame = 0
 
Query:  102 RPEAPPPMLPGRYVSKRERAAAAATTPPDPLTTTLITPS--SSSAIGSISVMDIRNDILLSLRQQRKGHSLNGKPPENLSLSLTGHDKAVNALQWSSTHSHLLASAGMDHTICVWNPWSKNERKARVLSHHTAAVKDIKWSELGLSLLSCGYDCSSRLFDVEKGLEIHMFKEDQVVGVVKFHPNNSNLFLSGGSKGVLKLWDIRTQKAAHQYVRGLGPILDVEFINCASQFVSSSDVSKGNVTENSILVWDVSRQVPLSNQVYAEAYTCPSIKCHTSEQYFVAQSNGNYIAIFSAKAPFKLDRYRRYESHGVSGFPVRCDFSLDGEQLASGSSDGCIYFYNSRSTELIKKVKLYEQACIDVAFHPVMPNVIASCSWNGEISVLE 483
            R EAP   LPGRY+SKRERA +      D        P   + S IGSIS  D+ +D+L S+  + KG +   + PE L+++L GH KAV A+ WS TH+HLLAS+GMDHTI +WN WS++ +KARVL+ H AAVKD+KWS+ GL +LSCGYDCSSRL DVEKGLE  MF++DQ VGV+KFHP+NSNLFLSGGSKG L+LWD+RT K  H+Y+RGLGPILDVEF     QFVSSSDVS GN++ENSI+VWD+SRQVPLSNQVYAEAYTCP ++ H  + YFVAQSNGNYIAIFS+  PFKLD+Y+RYESHGV+GFP++C+FSLDGE+L SGSSDG IYFYNSRS  LIKK+K YE+ACIDV FHP++ NVIASCSWNG++SV E
Sbjct:   54 REEAP---LPGRYISKRERALSGTVPEADESKQNTRGPHVITQSVIGSISKSDVPHDVLSSMWHKPKGRTQLSQIPEKLTIALNGHAKAVTAVHWSPTHAHLLASSGMDHTISIWNVWSRDHKKARVLNFHNAAVKDVKWSQQGLFVLSCGYDCSSRLIDVEKGLESQMFRDDQAVGVIKFHPDNSNLFLSGGSKGRLRLWDVRTGKVVHEYIRGLGPILDVEFSTDGKQFVSSSDVSGGNISENSIIVWDISRQVPLSNQVYAEAYTCPCVRYHPFDPYFVAQSNGNYIAIFSSNPPFKLDKYKRYESHGVAGFPIKCNFSLDGEKLVSGSSDGSIYFYNSRSPALIKKIKAYEEACIDVVFHPILSNVIASCSWNGDVSVFE 434    
BLAST of XM_017382857.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5Y3J6 ((WD repeat-containing protein 25-like {ECO:0000313|RefSeq:XP_022735003.1}))

HSP 1 Score: 535.798 bits (1379), Expect = 0.000e+0
Identity = 260/387 (67.18%), Postives = 312/387 (80.62%), Query Frame = 0
 
Query:  102 RPEAPPPMLPGRYVSKRERAAA-----AATTPPDPLTTTLITPSSSSAIGSISVMDIRNDILLSLRQQRKGHSLNGKPPENLSLSLTGHDKAVNALQWSSTHSHLLASAGMDHTICVWNPWSKNERKARVLSHHTAAVKDIKWSELGLSLLSCGYDCSSRLFDVEKGLEIHMFKEDQVVGVVKFHPNNSNLFLSGGSKGVLKLWDIRTQKAAHQYVRGLGPILDVEFINCASQFVSSSDVSKGNVTENSILVWDVSRQVPLSNQVYAEAYTCPSIKCHTSEQYFVAQSNGNYIAIFSAKAPFKLDRYRRYESHGVSGFPVRCDFSLDGEQLASGSSDGCIYFYNSRSTELIKKVKLYEQACIDVAFHPVMPNVIASCSWNGEISVLE 483
            R EAP   +PGRY+SKRERA +     AA   PD      IT      +GSIS +DI + +L S++ + KG +   + PE LS++L GH KAVNA+ WS TH+HLLASAGMD TI +WN WS++++KARV S H AAVKD+KWS+LGL +LSCGYDCSSRL DVEKGLE   FKEDQVVGV+KF+P+NSNLFLSGGSKG L+LWD+RT K  H+YVRGLGPILDVEFIN   QFVSSSDVS GNV+ENSI+VWD+SRQVPLSNQVYAEAYTCP ++ H  + YFVAQSNGNYIAIFS+  PFKLD+Y+RYESH VSGFPV+C+FSLDG++L SGSSDG +YFYNSRS+ L+KK+K YEQAC+DV FHP++ NVIASCSWNG++SV E
Sbjct:   58 REEAP---VPGRYISKRERALSVSVPLAAEPNPDHQDPRFIT---QPVLGSISDLDIPHYVLSSMQHKPKGITQLSQIPEKLSIALHGHAKAVNAVCWSPTHAHLLASAGMDQTIHIWNVWSRDQKKARVFSFHNAAVKDVKWSKLGLFVLSCGYDCSSRLIDVEKGLETQNFKEDQVVGVIKFNPDNSNLFLSGGSKGRLRLWDVRTGKVVHEYVRGLGPILDVEFINDGKQFVSSSDVSGGNVSENSIIVWDISRQVPLSNQVYAEAYTCPCVRYHPFDPYFVAQSNGNYIAIFSSSPPFKLDKYKRYESHAVSGFPVKCNFSLDGDKLVSGSSDGSMYFYNSRSSVLVKKIKAYEQACVDVVFHPILSNVIASCSWNGDVSVFE 438    
Match NameStatsDescription
A0A5B7BSK6E-Value: 0.000e+0, PID: 60.46(Uncharacterized protein {ECO:0000313|EMBL:MPA7185... [more]
A0A200QBW9E-Value: 0.000e+0, PID: 56.40(WD40 repeat {ECO:0000313|EMBL:OVA07959.1})[more]
A0A5J4ZY79E-Value: 0.000e+0, PID: 68.72NAD(P)H dehydrogenase (quinone) {ECO:0000256|ARBA:... [more]
A0A2R6PTA2E-Value: 0.000e+0, PID: 58.69(WD repeat-containing protein {ECO:0000313|EMBL:PS... [more]
A0A2U1KCL2E-Value: 0.000e+0, PID: 58.44(Transducin/WD40 repeat-like superfamily protein {... [more]
A0A834ZL54E-Value: 0.000e+0, PID: 66.50(Uncharacterized protein {ECO:0000313|EMBL:KAF8409... [more]
A0A1U7YMD2E-Value: 0.000e+0, PID: 57.61(WD repeat-containing protein 25 isoform X1 {ECO:0... [more]
F6H2H0E-Value: 0.000e+0, PID: 66.67(Uncharacterized protein {ECO:0000313|EMBL:CCB4645... [more]
A0A6A3AGG6E-Value: 0.000e+0, PID: 65.89(Indole-3-acetic acid-amido synthetase GH3.6-like ... [more]
A0A6P5Y3J6E-Value: 0.000e+0, PID: 67.18(WD repeat-containing protein 25-like {ECO:0000313... [more]
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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.

This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
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