Resource Type:
Polypeptide
Name:
XM_017383761.1
Identifier:
XM_017383761.1-protein
Sequence:
MVHSYTPAYYSSLHDSITSICKNILPFSFRKKRLPAIAAAEQKLSEHQSE
NLKWQQNSFHQILKLIGLCKEGIVPDEEVSAFRTHLLDTLISSPLDHEHE
LILKDKLIFLQELLYAQCISEEEYHSSKRPLLQRLAVQGAVIEARLVIAG
KPKEKSEEEWSSIDLKDANCLIGKEKMNLESKSKHNSAIKQIKEAASVLS
FVSPHKSAKFKEDKGVYDLDKENFKSSDHIFSSSNSEKNEMRISQENPFW
NCQMREKESETRSILMASESLPEDFPKSGGSKVKKKPFRTLFQREGQGGV
ENGSNEKEPKSGKKQWGFEGFKKWKKSDPSEDETAPLSLNERSDGEAYLG
KLVASPIGEGPDTKQIKKKLHSDGSPSDFFVDKVLGDKIRKELLRIQKEL
GESNPNAQFTNDQIDVISTRLPVDKADLKKFFPKSWCDRYGDVVLNVVRK
EFKDHVGEMKASGREKKQSPKRWETFDEDDDQNCHPNLFASCHVPIKQAN
STPLNSDRLAYSSRPYW
Sequence Length:
517
Sequence Checksum:
6e707d5fabb86b02d0556e95532e9c21
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017383761.1, derives from mRNA, XM_017383761.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017383761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017383761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZVX6 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8522925.1}))
HSP 1 Score: 696.041 bits (1795), Expect = 0.000e+0
Identity = 358/518 (69.11%), Postives = 419/518 (80.89%), Query Frame = 0
Match: A0A5J4ZVX6 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8522925.1}))
HSP 1 Score: 696.041 bits (1795), Expect = 0.000e+0
Identity = 358/518 (69.11%), Postives = 419/518 (80.89%), Query Frame = 0
Query: 2 VHSYTPAYYSSLHDSITSICKNILPFSFRKKRLPAIAAAEQKLSEHQSENLKWQQNSFHQILKLIGLCKEGIVPDEEVSAFRTHLLDTLISSPLDHEHELILKDKLIFLQELLYAQCISEEEYHSSKRPLLQRLAVQGAVIEARLVIAGKPKEKSEEEWSSIDLKDANCLIGKEKMNLESKSKHNSAIKQIKEAASVLSFVSPHKSAKFKEDKGVYDLDKENFKSSDHIFSSSNSEKNEMRISQENPFWNCQMREKESETRSILMASESLPEDFPK----SGGSKVKKKPFRTLFQREGQGGVENG-----SNEKEPKSGKKQWGFEGFKKWKKSDPSEDETAPLSLNERSDGEAYLGK--LVASPIGEGPDTKQIKKKLHSDGSPSDFFVDKVLGDKIRKELLRIQKELGESNPNAQFTNDQIDVISTRLPVDKADLKKFFPKSWCDRYGDVVLNVVRKEFKDHVGEM---KASGREKKQSPKRWETFDED-DDQNCHPNLFA--SCHVPIKQANST 502
++SYTP YY+SLHDSITSICK ILPFSF+K+RLPAIAAAEQ+LS+ QS+NLKWQQ+SFHQIL L+GLCKEGI+P+ EVSAFR HLLDTLI+SP DHEH I++DKLIFLQELLYA+CISE+EYHSSKRPLLQRLAVQGA IEAR VI G PK+ S+EEWS I+LKD CL+ KE N ++KSK+ SA+KQIK AAS +FVS HK K KEDK V D E+F + SS S KNE+ +S+ENPFW+ RE+ESET+SILM SESLP + K SGG KVKKKPFRTLFQRE + G +G S E+ KSGKKQWGF+GFKKWK+SD SEDETAPL L+ERSD AYLG +V+SPIGEGPDT+QIKKKLHS+GSP+DFF+DKVLG+KI+KEL RIQ EL +NPN QF+NDQID ISTRLPVD+ADLKKFFPKSWCD+YGDVVL+VV+KEFKDHVGEM K + REK+ + KRW TFD+D DD+NCHPNLFA P+KQ T
Sbjct: 1 MYSYTPTYYTSLHDSITSICKTILPFSFKKRRLPAIAAAEQRLSKQQSDNLKWQQDSFHQILNLMGLCKEGILPEAEVSAFRIHLLDTLIASPPDHEHPPIIRDKLIFLQELLYAKCISEDEYHSSKRPLLQRLAVQGAEIEARNVIVGAPKQSSDEEWSVINLKDEQCLLSKENFNSKNKSKNGSALKQIKGAASAFNFVSSHKPGKVKEDKDVIDSGAEHFGPNGWKIGSSVSVKNELGVSKENPFWDSHTRERESETKSILM-SESLPPESMKVQKQSGGDKVKKKPFRTLFQREQREGHGDGDRCTDSEERASKSGKKQWGFDGFKKWKRSD-SEDETAPLPLSERSDSAAYLGSCPIVSSPIGEGPDTQQIKKKLHSNGSPTDFFIDKVLGEKIKKELSRIQTELSATNPNLQFSNDQIDAISTRLPVDRADLKKFFPKSWCDQYGDVVLDVVKKEFKDHVGEMGSLKNAAREKQNNSKRWATFDDDYDDENCHPNLFAREDHSFPMKQPKFT 516
BLAST of XM_017383761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A2S7 ((Uncharacterized protein {ECO:0000313|EMBL:MPA50435.1}))
HSP 1 Score: 666.381 bits (1718), Expect = 0.000e+0
Identity = 348/491 (70.88%), Postives = 403/491 (82.08%), Query Frame = 0
Match: A0A5B7A2S7 ((Uncharacterized protein {ECO:0000313|EMBL:MPA50435.1}))
HSP 1 Score: 666.381 bits (1718), Expect = 0.000e+0
Identity = 348/491 (70.88%), Postives = 403/491 (82.08%), Query Frame = 0
Query: 12 SLHDSITSICKNILPFSFRKKRLPAIAAAEQKLSEHQSENLKWQQNSFHQILKLIGLCKEGIVPDEEVSAFRTHLLDTLISSPLDHEHELILKDKLIFLQELLYAQCISEEEYHSSKRPLLQRLAVQGAVIEARLVIAGKPKEKSEEEWSSIDLKDANCLIGKEKMNLESKSKHNSAIKQIKEAASVLSFVSPHKSAKFKEDKGVYDLDKENFKSSDHIFSSSNSEKNEMRISQENPFWNCQMREKESETRSILMASESLPEDFPK----SGGSKVKKKPFRTLFQREGQGGVENG--SNEKEPKSGKKQWGFEGFKKWKKSDPSEDETAPLSLNERSDGEAYLG--KLVASPIG-EGPDTKQIKKKLHSDGSPSDFFVDKVLGDKIRKELLRIQKELGESNPNAQFTNDQIDVISTRLPVDKADLKKFFPKSWCDRYGDVVLNVVRKEFKDHVGEM---KASGREKKQSPKRWETFDEDDDQNCHPNLFA 490
SLHDSITS+CK ILPF F+K+RLPAIAAAEQ+LS+ QS+NLKWQQ+SFHQIL L+GLCKEGI+P+ EVSAFRTHL++TLI+SP DHEH I+KDKLIFLQELLYA+CISE+EYHSSKRPLLQRLAVQGA IEAR VI G PK+ S+EEWS I+LKD CLI KE +N ++KSKH SA+KQIK AAS SFVS HK K KEDK V D E+ D SSS S KNE+ +S+ENPFW+ +RE+ESETRSILM SESLP + K SGG KVKKKPFRTLFQREG G ++G S + KSGKKQWGF+GFKKWKKSD SEDETAPL L+ERSD EA+LG +LVA+ IG EGPDT+QIK+KLHS+GS +DFF+DKVLG+KI+KEL RIQ EL NPN QF+NDQI+ ISTRLPVDK+DLKKFFPKSWCD+YGDVVL+VV+KEFKDHVGEM + + REK S KRW TF DDD+NCHPNLFA
Sbjct: 11 SLHDSITSLCKTILPFPFKKRRLPAIAAAEQRLSKQQSDNLKWQQDSFHQILNLMGLCKEGILPEAEVSAFRTHLVETLIASPPDHEHPPIVKDKLIFLQELLYAKCISEDEYHSSKRPLLQRLAVQGAEIEARNVIVGAPKQSSDEEWSVINLKDEQCLISKESLNSKNKSKHGSAMKQIKGAASAFSFVSSHKPGKVKEDKNVIDPGAEHVGPIDWNISSSVSVKNELWVSRENPFWDSHIRERESETRSILM-SESLPPESMKVEKQSGGDKVKKKPFRTLFQREGHGDGDHGPDSEARVSKSGKKQWGFDGFKKWKKSD-SEDETAPLPLSERSDSEAFLGSCRLVATQIGEEGPDTQQIKRKLHSNGSSTDFFIDKVLGEKIKKELSRIQTELSAKNPNLQFSNDQIEAISTRLPVDKSDLKKFFPKSWCDQYGDVVLDVVKKEFKDHVGEMGSLRNAAREKHNS-KRWATF--DDDENCHPNLFA 496
BLAST of XM_017383761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6SRU7 ((uncharacterized protein LOC113691770 {ECO:0000313|RefSeq:XP_027065867.1}) (uncharacterized protein LOC113693989 {ECO:0000313|RefSeq:XP_027068612.1}))
HSP 1 Score: 659.062 bits (1699), Expect = 0.000e+0
Identity = 344/521 (66.03%), Postives = 406/521 (77.93%), Query Frame = 0
Match: A0A6P6SRU7 ((uncharacterized protein LOC113691770 {ECO:0000313|RefSeq:XP_027065867.1}) (uncharacterized protein LOC113693989 {ECO:0000313|RefSeq:XP_027068612.1}))
HSP 1 Score: 659.062 bits (1699), Expect = 0.000e+0
Identity = 344/521 (66.03%), Postives = 406/521 (77.93%), Query Frame = 0
Query: 1 MVHSYTPAYYSSLHDSITSICKNILPFSFRKKRLPAIAAAEQKLSEHQSENLKWQQNSFHQILKLIGLCKEGIVPDEEVSAFRTHLLDTLISSPLDHEHELILKDKLIFLQELLYAQCISEEEYHSSKRPLLQRLAVQGAVIEARLVIAGKPKEKSEEEWSSIDLKDANCLIGKEKMNLESKSKHNSAIKQIKEAASVLSFVSPHKSAKFKEDKGVYDLDKENFKSSDHIFSSSNSEKNEMRISQENPFWNCQMREKESETRSILMASESLPEDFPK----SGGSKVKKKPFRTLFQREGQGG--VENGSN----EKEPKSGKKQWGFEGFKKWKKSDPSEDETAPLSLNERSDGEAYLGKLVASPIGEGPDTKQIKKKLHSDGSPSDFFVDKVLGDKIRKELLRIQKELGESNPNAQFTNDQIDVISTRLPVDKADLKKFFPKSWCDRYGDVVLNVVRKEFKDHVGEMKASGREKKQSPKRWETFDEDDDQNCHPNLFA--SCHVPIKQANSTPLNSDRL 509
MV++YTP YYSSL DSI S+CKNILPFSF+K+RLPAIAAAEQ+LS+ Q++NLKWQQ+SFHQILKL+GLCKEGI+P+ EVSAFR+HLLDTLI+SPLDHEH IL+DKL+FLQELLYA+CISE+EYHSSKRPLLQRLAVQGA IEAR VI G KE S+EEWS IDLKD C++ KE NL++K K SA+KQIK A SV+ F S +K A KEDKG+ EN + +D + E+ +S ENPFWN Q REKESET+SILM SESLP + K SGG K K+KPFRTLFQRE + G NG N E++ KSGKKQWGFEGFKKWKK+D S+DETAPL+LNE+S+ Y +LV SP+GEGPDTKQIK+KLH DG+PSDFFVDKVL D I+K+L +I+ EL N N ++DQI+ ISTRLPVDKADLK+FFPKSWCD+YGDVVL+VVRKEFKDHVG++ A GRE K S KRW TF DDD+NCHPNLFA +KQ S L D L
Sbjct: 1 MVYTYTPTYYSSLQDSIASLCKNILPFSFKKRRLPAIAAAEQRLSKQQADNLKWQQDSFHQILKLMGLCKEGILPETEVSAFRSHLLDTLIASPLDHEHSAILRDKLLFLQELLYAKCISEDEYHSSKRPLLQRLAVQGAEIEARDVIVGAQKESSDEEWSVIDLKDEKCIVSKEGSNLKNKQKQGSAMKQIKGAVSVMGFGSSNKGATTKEDKGLTAPGAENSRPADRRY--------EVGLSTENPFWNSQFREKESETKSILM-SESLPNESEKVEKQSGGDKGKRKPFRTLFQREQKEGHVSTNGDNGCGSEEKTKSGKKQWGFEGFKKWKKND-SDDETAPLALNEKSNCGIYNSQLVQSPVGEGPDTKQIKRKLHPDGAPSDFFVDKVLEDNIKKKLSQIRSELDAKNHNVHLSDDQIEAISTRLPVDKADLKQFFPKSWCDQYGDVVLDVVRKEFKDHVGQVSA-GRE-KHSSKRWTTF--DDDENCHPNLFAPEENFFHMKQDKSNALKKDHL 507
BLAST of XM_017383761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068UPN1 ((Uncharacterized protein {ECO:0000313|EMBL:CDP10510.1}))
HSP 1 Score: 658.292 bits (1697), Expect = 0.000e+0
Identity = 344/521 (66.03%), Postives = 406/521 (77.93%), Query Frame = 0
Match: A0A068UPN1 ((Uncharacterized protein {ECO:0000313|EMBL:CDP10510.1}))
HSP 1 Score: 658.292 bits (1697), Expect = 0.000e+0
Identity = 344/521 (66.03%), Postives = 406/521 (77.93%), Query Frame = 0
Query: 1 MVHSYTPAYYSSLHDSITSICKNILPFSFRKKRLPAIAAAEQKLSEHQSENLKWQQNSFHQILKLIGLCKEGIVPDEEVSAFRTHLLDTLISSPLDHEHELILKDKLIFLQELLYAQCISEEEYHSSKRPLLQRLAVQGAVIEARLVIAGKPKEKSEEEWSSIDLKDANCLIGKEKMNLESKSKHNSAIKQIKEAASVLSFVSPHKSAKFKEDKGVYDLDKENFKSSDHIFSSSNSEKNEMRISQENPFWNCQMREKESETRSILMASESLPEDFPK----SGGSKVKKKPFRTLFQREGQGG--VENGSN----EKEPKSGKKQWGFEGFKKWKKSDPSEDETAPLSLNERSDGEAYLGKLVASPIGEGPDTKQIKKKLHSDGSPSDFFVDKVLGDKIRKELLRIQKELGESNPNAQFTNDQIDVISTRLPVDKADLKKFFPKSWCDRYGDVVLNVVRKEFKDHVGEMKASGREKKQSPKRWETFDEDDDQNCHPNLFA--SCHVPIKQANSTPLNSDRL 509
MV++YTP YYSSL DSI S+CKNILPFSF+K+RLPAIAAAEQ+LS+ Q++NLKWQQ+SFHQILKL+GLCKEGI+P+ EVSAFR+HLLDTLI+SPLDHEH IL+DKL+FLQELLYA+CISE+EYHSSKRPLLQRLAVQGA IEAR VI G KE S+EEWS IDLKD C++ KE NL++K K SA+KQIK A SV+ F S +K A KEDKG+ EN + +D + E+ +S ENPFWN Q REKESET+SILM SESLP + K SGG K K+KPFRTLFQRE + G NG N E++ KSGKKQWGFEGFKKWKK+D S+DETAPL+LNE+S+ Y +LV SP+GEGPDTKQIK+KLH DG+PSDFFVDKVL D I+K+L +I+ EL N N ++DQI+ ISTRLPVDKADLK+FFPKSWCD+YGDVVL+VVRKEFKDHVG++ A GRE K S KRW TF DDD+NCHPNLFA +KQ S L D L
Sbjct: 1 MVYTYTPTYYSSLQDSIASLCKNILPFSFKKRRLPAIAAAEQRLSKQQADNLKWQQDSFHQILKLMGLCKEGILPETEVSAFRSHLLDTLIASPLDHEHSAILRDKLLFLQELLYAKCISEDEYHSSKRPLLQRLAVQGAEIEARDVIVGAQKESSDEEWSVIDLKDEKCIVSKEGSNLKNKQKQGSAMKQIKGAVSVMGFGSSNKGATTKEDKGLTAPGAENSRPADRRY--------EVGLSTENPFWNSQFREKESETKSILM-SESLPNESEKVEKQSGGDKGKRKPFRTLFQREQKEGHVSTNGDNGCGSEEKTKSGKKQWGFEGFKKWKKND-SDDETAPLALNEKSNCGIYNSQLVQSPVGEGPDTKQIKRKLHPDGAPSDFFVDKVLEDNIKKKLSQIRSELDAKNHNVHLSDDQIEAISTRLPVDKADLKQFFPKSWCDQYGDVVLDVVRKEFKDHVGQVSA-GRE-KHSSKRWTTF--DDDENCHPNLFAPEENFFHMKQDKSNALKKDHL 507
BLAST of XM_017383761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3XF94 ((uncharacterized protein LOC107764392 {ECO:0000313|RefSeq:XP_016438439.1}))
HSP 1 Score: 653.284 bits (1684), Expect = 0.000e+0
Identity = 345/536 (64.37%), Postives = 407/536 (75.93%), Query Frame = 0
Match: A0A1S3XF94 ((uncharacterized protein LOC107764392 {ECO:0000313|RefSeq:XP_016438439.1}))
HSP 1 Score: 653.284 bits (1684), Expect = 0.000e+0
Identity = 345/536 (64.37%), Postives = 407/536 (75.93%), Query Frame = 0
Query: 1 MVHSYTPAYYSSLHDSITSICKNILPFSFRKKRLPAIAAAEQKLSEHQSENLKWQQNSFHQILKLIGLCKEGIVPDEEVSAFRTHLLDTLISSPLDHEHELILKDKLIFLQELLYAQCISEEEYHSSKRPLLQRLAVQGAVIEARLVIAGKPKEKSEEEWSSIDLKDANCLIGKEKMNLESKSKHNSAIKQIK-EAASVLSFVSPHKSAKFKEDKGVYDLDKENFKSSDHIFSSSNSEKNEMRISQENPFWNCQMREKESETRSILMASESLPEDFPK----SGGSKVKKKPFRTLFQREGQGGVENGSNEKEP------KSGKKQWGFEGFKKWKKSDPSEDETAPLSLNERSDGEAYLGKLVASPIGEGPDTKQIKKKLHSDGSPSDFFVDKVLGDKIRKELLRIQKELGESNPNAQFTNDQIDVISTRLPVDKADLKKFFPKSWCDRYGDVVLNVVRKEFKDHVGEM---KASG---REKKQSPKRWETFDE-DDDQNCHPNLFASCH----VPIKQANS-TPLNSDRLAYSS 513
MV+SYTP YYSSLHDSITS+CK ILPF F+K+RLPAIAAAEQ+LS+ QS+NLKWQQ SFHQIL L+GLCKEGI+ + EVSAFR+HLLDTLI+SP DHEH IL+DKLIFLQELLYA+CISEEEYH+SKRPLLQRLAVQGA IEA+ V+ G KE ++EEWS IDLKD +GKE N SK K NSAIKQIK AASV F S +K+ K KE++G+ S++ S E+NE+ +S ENPFWN ++EK+SET+SILM ESLP + K SGG K +KKPF+ LF RE G + EP KSGKKQWGF+GFKKWKK+D EDETAPLSL+E+SDG YLG+LVA P+GEGPDTKQIK+KLH +GSPSDFFVDKVLGD I+KEL RIQ ELG N + T+DQI+ ISTRLPVDKADLKKFFPK+WCDRYGDVVL+VVRKEFK+HVGEM + G ++K + KRW TFDE DDD+NCHPNLFA +P KQA TPL S ++ +S
Sbjct: 1 MVYSYTPTYYSSLHDSITSLCKTILPFPFKKRRLPAIAAAEQRLSKQQSDNLKWQQESFHQILNLMGLCKEGILAESEVSAFRSHLLDTLIASPADHEHSSILRDKLIFLQELLYAKCISEEEYHASKRPLLQRLAVQGAEIEAKHVVVGSKKEGTDEEWSVIDLKDEKSYLGKE--NSSSKQKQNSAIKQIKGGAASVFGFASSNKNGKIKEERGIL---------SENCRQDSKYERNELGVSTENPFWNTHLKEKDSETKSILMV-ESLPNEPMKVKKQSGGDKSRKKPFKGLFLREQNEGQSDDHQRAEPESEGKTKSGKKQWGFDGFKKWKKND-CEDETAPLSLDEKSDGGTYLGQLVAEPVGEGPDTKQIKRKLHPNGSPSDFFVDKVLGDSIKKELSRIQTELGAKNSSVALTDDQIEAISTRLPVDKADLKKFFPKTWCDRYGDVVLDVVRKEFKNHVGEMGNLRGGGGIITKEKNNSKRWTTFDESDDDENCHPNLFAPQQDHHTLPSKQAKVLTPLKSGQVYVNS 523
BLAST of XM_017383761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7X8U6 ((uncharacterized protein LOC104231964 {ECO:0000313|RefSeq:XP_009783354.1}))
HSP 1 Score: 652.514 bits (1682), Expect = 0.000e+0
Identity = 341/526 (64.83%), Postives = 401/526 (76.24%), Query Frame = 0
Match: A0A1U7X8U6 ((uncharacterized protein LOC104231964 {ECO:0000313|RefSeq:XP_009783354.1}))
HSP 1 Score: 652.514 bits (1682), Expect = 0.000e+0
Identity = 341/526 (64.83%), Postives = 401/526 (76.24%), Query Frame = 0
Query: 1 MVHSYTPAYYSSLHDSITSICKNILPFSFRKKRLPAIAAAEQKLSEHQSENLKWQQNSFHQILKLIGLCKEGIVPDEEVSAFRTHLLDTLISSPLDHEHELILKDKLIFLQELLYAQCISEEEYHSSKRPLLQRLAVQGAVIEARLVIAGKPKEKSEEEWSSIDLKDANCLIGKEKMNLESKSKHNSAIKQIK-EAASVLSFVSPHKSAKFKEDKGVYDLDKENFKSSDHIFSSSNSEKNEMRISQENPFWNCQMREKESETRSILMASESLPEDFPK----SGGSKVKKKPFRTLFQREGQGGVENGSNEKEP------KSGKKQWGFEGFKKWKKSDPSEDETAPLSLNERSDGEAYLGKLVASPIGEGPDTKQIKKKLHSDGSPSDFFVDKVLGDKIRKELLRIQKELGESNPNAQFTNDQIDVISTRLPVDKADLKKFFPKSWCDRYGDVVLNVVRKEFKDHVGEM---KASG----REKKQSPKRWETFDE-DDDQNCHPNLFASCH----VPIKQANSTP 503
MV+SYTP YYSSLHDSITS+CK ILPF F+K+RLPAIAAAEQ+LS+ QS+NLKWQQ SFHQIL L+GLCKEGI+ + EVSAFR+HLLDTLI+SP DHEH IL+DKLIFLQELLYA+CISEEEYH+SKRPLLQRLAVQGA IEA+ V+ G KE +++EWS IDLKD +GKE + SK K NSAIKQIK AASV F + +K+ K KE++G+ S++ S E+NE+ +S ENPFWN ++EK+SET+SILM ESLP + K SGG K +KKPF+ LF RE G + EP KSGKKQWGF+GFKKWKK+D EDETAPLSL+E+SDG YLG+LVA P+GEGPDTKQIK+KLH +G+PSDFFVDKVLGD I+KEL RIQ ELG N + T+DQI+ ISTRLPVDKADLKKFFPK+WCDRYGDVVL+VVRKEFK+HVGEM + G REKK + KRW TFDE DDD+NCHPNLFA P KQA TP
Sbjct: 1 MVYSYTPTYYSSLHDSITSLCKTILPFPFKKRRLPAIAAAEQRLSKQQSDNLKWQQESFHQILNLMGLCKEGILAESEVSAFRSHLLDTLIASPADHEHSSILRDKLIFLQELLYAKCISEEEYHTSKRPLLQRLAVQGAEIEAKHVVVGSKKEGTDDEWSVIDLKDEKSYLGKEISS--SKQKQNSAIKQIKGGAASVFGFAASNKNGKIKEERGIL---------SENCKQDSKYERNELGVSTENPFWNTHLKEKDSETKSILMV-ESLPSEPMKVKKQSGGDKSRKKPFKGLFLREQNEGQSDDHQRAEPESEGKTKSGKKQWGFDGFKKWKKND-CEDETAPLSLDEKSDGGTYLGQLVAEPVGEGPDTKQIKRKLHPNGAPSDFFVDKVLGDSIKKELSRIQTELGAKNSSVALTDDQIEAISTRLPVDKADLKKFFPKTWCDRYGDVVLDVVRKEFKNHVGEMGNLRGGGGIITREKKNNSKRWTTFDESDDDENCHPNLFAPQQDHHTFPSKQAKLTP 513
BLAST of XM_017383761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3ZUJ1 ((uncharacterized protein LOC107790565 {ECO:0000313|RefSeq:XP_016467994.1}))
HSP 1 Score: 652.514 bits (1682), Expect = 0.000e+0
Identity = 341/526 (64.83%), Postives = 401/526 (76.24%), Query Frame = 0
Match: A0A1S3ZUJ1 ((uncharacterized protein LOC107790565 {ECO:0000313|RefSeq:XP_016467994.1}))
HSP 1 Score: 652.514 bits (1682), Expect = 0.000e+0
Identity = 341/526 (64.83%), Postives = 401/526 (76.24%), Query Frame = 0
Query: 1 MVHSYTPAYYSSLHDSITSICKNILPFSFRKKRLPAIAAAEQKLSEHQSENLKWQQNSFHQILKLIGLCKEGIVPDEEVSAFRTHLLDTLISSPLDHEHELILKDKLIFLQELLYAQCISEEEYHSSKRPLLQRLAVQGAVIEARLVIAGKPKEKSEEEWSSIDLKDANCLIGKEKMNLESKSKHNSAIKQIK-EAASVLSFVSPHKSAKFKEDKGVYDLDKENFKSSDHIFSSSNSEKNEMRISQENPFWNCQMREKESETRSILMASESLPEDFPK----SGGSKVKKKPFRTLFQREGQGGVENGSNEKEP------KSGKKQWGFEGFKKWKKSDPSEDETAPLSLNERSDGEAYLGKLVASPIGEGPDTKQIKKKLHSDGSPSDFFVDKVLGDKIRKELLRIQKELGESNPNAQFTNDQIDVISTRLPVDKADLKKFFPKSWCDRYGDVVLNVVRKEFKDHVGEM---KASG----REKKQSPKRWETFDE-DDDQNCHPNLFASCH----VPIKQANSTP 503
MV+SYTP YYSSLHDSITS+CK ILPF F+K+RLPAIAAAEQ+LS+ QS+NLKWQQ SFHQIL L+GLCKEGI+ + EVSAFR+HLLDTLI+SP DHEH IL+DKLIFLQELLYA+CISEEEYH+SKRPLLQRLAVQGA IEA+ V+ G KE +++EWS IDLKD +GKE + SK K NSAIKQIK AASV F + +K+ K KE++G+ S++ S E+NE+ +S ENPFWN ++EK+SET+SILM ESLP + K SGG K +KKPF+ LF RE G + EP KSGKKQWGF+GFKKWKK+D EDETAPLSL+E+SDG YLG+LVA P+GEGPDTKQIK+KLH +G+PSDFFVDKVLGD I+KEL RIQ ELG N + T+DQI+ ISTRLPVDKADLKKFFPK+WCDRYGDVVL+VVRKEFK+HVGEM + G REKK + KRW TFDE DDD+NCHPNLFA P KQA TP
Sbjct: 1 MVYSYTPTYYSSLHDSITSLCKTILPFPFKKRRLPAIAAAEQRLSKQQSDNLKWQQESFHQILNLMGLCKEGILAESEVSAFRSHLLDTLIASPADHEHSSILRDKLIFLQELLYAKCISEEEYHTSKRPLLQRLAVQGAEIEAKHVVVGSKKEGTDDEWSVIDLKDEKSYLGKEISS--SKQKQNSAIKQIKGGAASVFGFAASNKNGKIKEERGIL---------SENCKQDSKYERNELGVSTENPFWNTHLKEKDSETKSILMV-ESLPSEPMKVKKQSGGDKSRKKPFKGLFLREQNEGQSDDHQRAEPESEGKTKSGKKQWGFDGFKKWKKND-CEDETAPLSLDEKSDGGTYLGQLVAEPVGEGPDTKQIKRKLHPNGAPSDFFVDKVLGDSIKKELSRIQTELGAKNSSVALTDDQIEAISTRLPVDKADLKKFFPKTWCDRYGDVVLDVVRKEFKNHVGEMGNLRGGGGIITREKKNNSKRWTTFDESDDDENCHPNLFAPQQDHHTFPSKQAKLTP 513
BLAST of XM_017383761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6KDA7 ((Uncharacterized protein {ECO:0000313|EMBL:OIT20803.1}))
HSP 1 Score: 650.588 bits (1677), Expect = 0.000e+0
Identity = 345/539 (64.01%), Postives = 405/539 (75.14%), Query Frame = 0
Match: A0A1J6KDA7 ((Uncharacterized protein {ECO:0000313|EMBL:OIT20803.1}))
HSP 1 Score: 650.588 bits (1677), Expect = 0.000e+0
Identity = 345/539 (64.01%), Postives = 405/539 (75.14%), Query Frame = 0
Query: 1 MVHSYTPAYYSSLHDSITSICKNILPFSFRKKRLPAIAAAEQKLSEHQSENLKWQQNSFHQILKLIGLCKEGIVPDEEVSAFRTHLLDTLISSPLDHEHELILKDKLIFLQELLYAQCISEEEYHSSKRPLLQRLAVQGAVIEARLVIAGKPKEKSEEEWSSIDLKDANCLIGKEKMNLESKSKHNSAIKQIK-EAASVLSFVSPHKSAKFKEDKGVYDLDKENFKSSDHIFSSSNSEKNEMRISQENPFWNCQMREKESETRSILMASESLPEDFPK----SGGSKVKKKPFRTLFQREGQGGVENGSNEKEP------KSGKKQWGFEGFKKWKKSDPSEDETAPLSLNERSDGEAYLGKLVASPIGEGPDTKQIKKKLHSDGSPSDFFVDKVLGDKIRKELLRIQKELGESNPNAQFTNDQIDVISTRLPVDKADLKKFFPKSWCDRYGDVVLNVVRKEFKDHVGEM---KASG----REKKQSPKRWETFDE---DDDQNCHPNLFASCH----VPIKQAN-STPLNSDRLAYSS 513
MV+SYTP YYSSLHDSITS+CK ILPF F+K+RLPAI AAEQ+LS+ QS+NLKWQQ SFHQIL L+GLCKEGI+ + EVSAFR+HLLDTLI+SP DHEH IL+DKLIFLQELLYA+CISEEEYH+SKRPLLQRLAVQGA IEA+ V+ G KE ++EEWS IDLKD +GKE N SK K NSAIKQIK AASV F S +K+ K KE++G+ EN K S E+NE+ +S ENPFWN ++E + ET+SILM ESLP + K SGG K +KKPF+ LF RE G + EP KSGKKQWGFEGFKKWKK+D EDETAPLSL+E+SDG YLG+LVA P+GEGPDTKQIK+KLH +G+PSDFFVDKVLGD I+KEL RIQ ELG N + + T+DQI+ ISTRLPVDKADLKKFFPK+WCDRY DVVL+VVRKEFK+HVGEM + G REKK + KRW TFDE DDD+NCHPNLFA P KQA ++PL S ++ +S
Sbjct: 1 MVYSYTPTYYSSLHDSITSLCKTILPFPFKKRRLPAIVAAEQRLSKQQSDNLKWQQESFHQILNLMGLCKEGILAESEVSAFRSHLLDTLIASPADHEHSSILRDKLIFLQELLYAKCISEEEYHTSKRPLLQRLAVQGAEIEAKHVVVGSKKEGTDEEWSVIDLKDEKSYLGKE--NSSSKQKQNSAIKQIKGGAASVFGFASSNKNGKIKEERGILG---ENCK------QDSKYERNELGVSTENPFWNTHLKETDCETKSILMV-ESLPSEPMKVKKQSGGDKSRKKPFKGLFLREQNEGQSDDHQRAEPESEGKTKSGKKQWGFEGFKKWKKND-CEDETAPLSLDEKSDGGTYLGQLVAEPVGEGPDTKQIKRKLHPNGAPSDFFVDKVLGDSIKKELSRIQTELGAKNSSVELTDDQIEAISTRLPVDKADLKKFFPKTWCDRYADVVLDVVRKEFKNHVGEMGNLRGGGGIITREKKNNSKRWTTFDESGDDDDENCHPNLFAPQQDHHTFPSKQAKLTSPLKSGQVYVNS 526
BLAST of XM_017383761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EFS9 (Ammonium_transp domain-containing protein {ECO:0000259|Pfam:PF00909})
HSP 1 Score: 650.588 bits (1677), Expect = 0.000e+0
Identity = 344/521 (66.03%), Postives = 407/521 (78.12%), Query Frame = 0
Match: A0A4S4EFS9 (Ammonium_transp domain-containing protein {ECO:0000259|Pfam:PF00909})
HSP 1 Score: 650.588 bits (1677), Expect = 0.000e+0
Identity = 344/521 (66.03%), Postives = 407/521 (78.12%), Query Frame = 0
Query: 13 LHDSITSICKNILPFSFRKKRLPAIAAAEQKLSEHQSENLKWQQNSFHQILKLIGLCKEGIVPDEEVSAFRTHLLDTLISSPLDHEHELILKDKLIFLQELLYAQCISEEEYHSSKRPLLQRLAVQGAVIEARLVIAGKPKEKSEEEWSSIDLKDANCLIGKEKMNLESKSKHNSAIKQIKEAASVLSFVSPHKSAKFKEDKGVYDLDKENFKSSDHIFSSSNSEKNEMRISQENPFWNCQMREKESETRSILMASESLPEDFPK----SGGSKVKKKPFRTLFQREGQGGVENG--SNEKEPKSGKKQWGFEGFKKWKKSDPSEDETAPLSLNERSDGEAYL--GKLVASPIGEGPDTKQIKKKLHSDGSPSDFFVDKVLGDKIRKELLRIQKELGESNPNAQFTNDQIDVISTRLPVDKADLKKFFPKSWCDRYGDVVLNVVRKEFKDHVGEMKA---SGREKKQSPKRWETFDEDDDQNCHPNLFA--SCHVPIKQA-NSTPLNSDRL--AYSSRPYW 517
LHDSITSICKNILPFSF+K+RLPAI AAEQ+LS+ QS+NLKWQQ+SFHQILKL+GL KEGI+P+ EVSAFR+HLLDTL++SP D E +I+KDKL+FLQELLYA+CISE+EYHSSKRPLLQ LAVQGA IEAR VI PK S EEWS IDLKD +CL+ KE N ++KSKH SA+KQIK + SV F S HKS + KEDKG+ D ++ D I +SS + KNE+ +S+ENPFWN +REKESETRS+LM SESLP + K SGG + KKK F TLFQREG ++ S EK KSGKKQWGF+GFKKWKK++ SEDE+APL L+ERSD EA+L ++V SP GEGPDTKQIK+KLHS+GSPSDFF+DKVL DKI+KEL RIQ EL NPN QF+NDQI+ ISTRLPVDKADLK FFPKSWCDRYGDVVLNVV+KEFKDHVGEM+ + REK+ KRW TF DDD+NCHPNLFA KQA +S+PL DR + + P++
Sbjct: 14 LHDSITSICKNILPFSFKKRRLPAIVAAEQRLSKQQSDNLKWQQDSFHQILKLMGLSKEGILPETEVSAFRSHLLDTLVASPADLEQPVIIKDKLVFLQELLYAKCISEDEYHSSKRPLLQSLAVQGAEIEARDVIVAAPKGSSGEEWSVIDLKDEHCLLNKESSNSKTKSKHGSAMKQIKGSTSVFGFASSHKSGRSKEDKGLIDPGPDHSGLIDQISASSAASKNELGLSKENPFWNSHIREKESETRSVLM-SESLPPESMKVENRSGGERGKKKIFGTLFQREGHECSDHSHDSEEKVSKSGKKQWGFDGFKKWKKNE-SEDESAPLPLSERSDSEAFLESCEIVDSPFGEGPDTKQIKRKLHSNGSPSDFFIDKVLSDKIKKELSRIQTELNAKNPNLQFSNDQIEAISTRLPVDKADLKNFFPKSWCDRYGDVVLNVVKKEFKDHVGEMEGLRNAAREKQNGSKRWATF--DDDENCHPNLFAPQENSFTTKQAKHSSPLKDDRAYKCFKNNPFF 530
BLAST of XM_017383761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6T3E6 ((uncharacterized protein LOC113697160 isoform X1 {ECO:0000313|RefSeq:XP_027072441.1}))
HSP 1 Score: 650.588 bits (1677), Expect = 0.000e+0
Identity = 341/522 (65.33%), Postives = 405/522 (77.59%), Query Frame = 0
Match: A0A6P6T3E6 ((uncharacterized protein LOC113697160 isoform X1 {ECO:0000313|RefSeq:XP_027072441.1}))
HSP 1 Score: 650.588 bits (1677), Expect = 0.000e+0
Identity = 341/522 (65.33%), Postives = 405/522 (77.59%), Query Frame = 0
Query: 1 MVHSYTPAYYSSLHDSITSICKNILPFSFRKKRLPAIAAAEQKLSEHQSENLKWQQNSFHQILKLIGLCKEGIVPDEEVSAFRTHLLDTLISSPLDHEHELILKDKLIFLQELLYAQCISEEEYHSSKRPLLQRLAVQGAVIEARLVIAGKPKEKSEEEWSSIDLKDANCLIGKEKMNLESKSKHNSAIKQIKEAA-SVLSFVSPHKSAKFKEDKGVYDLDKENFKSSDHIFSSSNSEKNEMRISQENPFWNCQMREKESETRSILMASESLPEDFPK----SGGSKVKKKPFRTLFQREGQGG--VENGSN----EKEPKSGKKQWGFEGFKKWKKSDPSEDETAPLSLNERSDGEAYLGKLVASPIGEGPDTKQIKKKLHSDGSPSDFFVDKVLGDKIRKELLRIQKELGESNPNAQFTNDQIDVISTRLPVDKADLKKFFPKSWCDRYGDVVLNVVRKEFKDHVGEMKASGREKKQSPKRWETFDEDDDQNCHPNLFA--SCHVPIKQANSTPLNSDRL 509
MV++YTP YYSSL DSI S+CKNILPFSF+K+RLPAIAAAEQ+LS+ Q++NLKWQQ+SFHQILKL+GLCKEGI+P+ EVSAFR+HLLDTLI+SPLDHEH IL+DKL+FLQELLYA+CISE+EYHSSKRPLLQRLAVQGA IEAR +I G KE S+E WS IDLKD C++GKE NL+ K K SA+KQIK A SV+ F S +K A KEDKG+ EN + +D + E+ +S ENPFWN Q REKESET+SILM SESLP + K SGG K K+KPFRTLFQRE + G NG N E++ KSGKKQWGFEGFKKWKK+D S+DETAPL+LNE+S+ Y +LV SP+GEGPDTKQIK+KLH DG+PSDFFVDKVL D I+K+L +I+ EL N N ++DQI+ +STRLPVDKADLK+FFPKSWCD+YGDVVL+VVRKEFKDHVG++ + GRE K S KRW TF DDD+NCHPNLFA +KQ S L D L
Sbjct: 1 MVYTYTPTYYSSLQDSIASLCKNILPFSFKKRRLPAIAAAEQRLSKQQADNLKWQQDSFHQILKLMGLCKEGILPETEVSAFRSHLLDTLIASPLDHEHSSILRDKLLFLQELLYAKCISEDEYHSSKRPLLQRLAVQGAEIEARDIIVGAQKESSDEVWSVIDLKDEKCIVGKEGSNLKKKQKQGSAMKQIKGGAVSVMGFGSSNKGATTKEDKGLTAPGGENSRPADRRY--------EVELSTENPFWNSQFREKESETKSILM-SESLPNESEKVEKQSGGDKGKRKPFRTLFQREQKEGHVSTNGDNGCGSEEKTKSGKKQWGFEGFKKWKKND-SDDETAPLALNEKSNCGIYNSQLVQSPVGEGPDTKQIKRKLHPDGAPSDFFVDKVLEDNIKKKLSQIRSELDAKNHNVHLSDDQIEAVSTRLPVDKADLKQFFPKSWCDQYGDVVLDVVRKEFKDHVGQV-SVGRE-KHSSKRWTTF--DDDENCHPNLFAPEENFFHMKQDKSNALKKDHL 508
| Match Name | Stats | Description |
|---|---|---|
| A0A5J4ZVX6 | E-Value: 0.000e+0, PID: 69.11 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8522... [more] |
| A0A5B7A2S7 | E-Value: 0.000e+0, PID: 70.88 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5043... [more] |
| A0A6P6SRU7 | E-Value: 0.000e+0, PID: 66.03 | (uncharacterized protein LOC113691770 {ECO:0000313... [more] |
| A0A068UPN1 | E-Value: 0.000e+0, PID: 66.03 | (Uncharacterized protein {ECO:0000313|EMBL:CDP1051... [more] |
| A0A1S3XF94 | E-Value: 0.000e+0, PID: 64.37 | (uncharacterized protein LOC107764392 {ECO:0000313... [more] |
| A0A1U7X8U6 | E-Value: 0.000e+0, PID: 64.83 | (uncharacterized protein LOC104231964 {ECO:0000313... [more] |
| A0A1S3ZUJ1 | E-Value: 0.000e+0, PID: 64.83 | (uncharacterized protein LOC107790565 {ECO:0000313... [more] |
| A0A1J6KDA7 | E-Value: 0.000e+0, PID: 64.01 | (Uncharacterized protein {ECO:0000313|EMBL:OIT2080... [more] |
| A0A4S4EFS9 | E-Value: 0.000e+0, PID: 66.03 | Ammonium_transp domain-containing protein {ECO:000... [more] |
| A0A6P6T3E6 | E-Value: 0.000e+0, PID: 65.33 | (uncharacterized protein LOC113697160 isoform X1 {... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |