Resource Type:
Polypeptide
Name:
XM_017387538.1
Identifier:
XM_017387538.1-protein
Sequence:
MEESGQQGPDRVVPVSNSTSPVAVESHFSPDNRIEQILQPKEDKVVSASS
LNTTIAGPPSIITGPPEILASSGALATSYQPNAYAPLEQSFYYGGYENNA
GNWGEYPNYVNANNLQIIPPAMFNDNSSLFYPSGYSFDTQMAYGQFPPLA
SPMSPFLVDGQLYSPHQIPMSPNFYPQSISPGLPHVGSSHSMSQTEMATP
VSTGQDSVNDNMLLGPGSGYYLHFGSFPASSAPANSSLGLYKYPGEFGSG
ENPLIRSNSNDTGNILSPLTPGAVYTQPVGILGSYDHSLAQASQQQIPFT
RRYHNSTSSRMSNYGNWDASRSNRFTPDKGGRRDRDSISISADSHGNAND
RNRGPRALKPKIKTSTEEKAAPGVAKAGASTSGVNLDLYNQPDFVTDYER
AKFFVIKSFSEDNVHKSIKYCVWASTPLGNRKLDAAFQEAKDSNSIYPVF
LFFSVNASGQFCGVAEMTGPVDFENDADYWQQDRWSGQFPVKWHIIKDIP
NGRFRHILLDNNENKPVTHSRDSQEVKLEQGLAMLKIFKEHEADTSMLDD
FVYYDEKERSLQEKRAKQSSPGKIPDASITQLSENLAGTLHLKVIEDKQK
Sequence Length:
600
Sequence Checksum:
3a445c8d131707cbbbfb3c8ec223bc81
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017387538.1, derives from mRNA, XM_017387538.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017387538.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017387538.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YPC9 (YTH domain-containing protein {ECO:0000259|PROSITE:PS50882})
HSP 1 Score: 723.391 bits (1866), Expect = 0.000e+0
Identity = 377/619 (60.90%), Postives = 451/619 (72.86%), Query Frame = 0
Match: A0A5B6YPC9 (YTH domain-containing protein {ECO:0000259|PROSITE:PS50882})
HSP 1 Score: 723.391 bits (1866), Expect = 0.000e+0
Identity = 377/619 (60.90%), Postives = 451/619 (72.86%), Query Frame = 0
Query: 1 MEESGQQGPDRVVPVSNSTS---PVAVESHFSPDNRIEQILQPKEDKVVSAS-SLNTTIAGPPSIITGPPEILASSGALATSYQPNAYAPLEQSFYYGGYENNAGNWGEYPNYVNANNLQIIPPAMFNDNSSLFYPSGYSFDTQMAYGQFPPLASPMSPFLVDGQLYSPHQIPMSPNFYPQSISPGLPHVGSSHSMSQTEMATPVSTGQDSVNDNMLLGPGSGYYLHFGSFPASSAPANS-SLGLYKYPGEFGSGENPLIRSNSNDTGNILSPLTPGAVYTQPVGILGSYDHSLAQASQQQIPF---------TRRYHNSTSSRMSNYGN-----WDASRSNRFTPDKGGRR--DRDSISISADSHGNANDRNRGPRALKPKIKTSTEEKAAPGVAKAGASTSGVNLDLYNQPDFVTDYERAKFFVIKSFSEDNVHKSIKYCVWASTPLGNRKLDAAFQEAKDSNSIYPVFLFFSVNASGQFCGVAEMTGPVDFENDADYWQQDRWSGQFPVKWHIIKDIPNGRFRHILLDNNENKPVTHSRDSQEVKLEQGLAMLKIFKEHEADTSMLDDFVYYDEKERSLQEKRAKQSSPG------KIPDASITQLSENLAGTLHL 592
ME++ QQG DR+ P S S+ PV PDN EQ PK++++VSA+ S + I GPP +T PE L +SGA T Y NAY+P E +FYYGGYEN+ NW EY +YVN + LQ++PPAM+NDN SL + SGY FD+QMAYGQF P+ASP+SP +VDGQLYSPHQI SP + PQ +SP +PHV S+ +SQTE+ TP S GQ+ ++DNML GPGSGY++HFGS NS S G YK+ GEFGSGE RSN +DT LSPLT VY QP+GILG Y+H++ Q SQQQ PF RRY S + SNYGN W A + NR TPDK GRR DRDSISI S ++DRNRGPRA KPK K++TEE ++ G+ K GASTSGV DLYN+ DFVT+YE AKFF+IKSFSEDNVHKSIKY +WASTPLGNRKLDAA+ EAK+ PVFL FSVNASGQFCGVAEM GPVDFENDADYWQQDRWSGQFPV+WHIIKD+PN FRHILL+NN+NKPVTHSRDSQEVKLEQG+ MLKIFK+H ADTS+LDDF +YDE+E+ LQE++A+Q + + DASI QLS+N A + L
Sbjct: 1 MEDASQQGQDRITPTSTSSGGGRPVK------PDNSTEQPPSPKDERIVSANPSSDAAITGPPRDVTEQPESLDTSGAPTTIYPLNAYSPQEHTFYYGGYENSTSNWDEYSHYVNPSGLQVVPPAMYNDNPSLVFHSGYGFDSQMAYGQFSPMASPLSPIMVDGQLYSPHQISFSPTYCPQPVSPSVPHVSSTLPISQTELITPGSGGQEGLSDNMLFGPGSGYFVHFGSLGGGELSGNSYSTGFYKFQGEFGSGELMPNRSNPSDTSRFLSPLTSTTVYPQPIGILGPYEHNVGQISQQQRPFHGFGLSSSPARRYPYGGSYQSSNYGNASISHWAADQQNRLTPDKVGRRERDRDSISIPNASQCISSDRNRGPRASKPKGKSTTEESSSSGIGKNGASTSGVYFDLYNRADFVTNYENAKFFIIKSFSEDNVHKSIKYNIWASTPLGNRKLDAAYHEAKEMKGHCPVFLLFSVNASGQFCGVAEMVGPVDFENDADYWQQDRWSGQFPVQWHIIKDVPNSLFRHILLENNDNKPVTHSRDSQEVKLEQGIEMLKIFKDHVADTSILDDFDFYDEREKVLQERKARQQTISTKNASVTLADASINQLSDNFAEAIQL 613
BLAST of XM_017387538.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YNM8 (YTH domain-containing protein {ECO:0000259|PROSITE:PS50882})
HSP 1 Score: 714.146 bits (1842), Expect = 0.000e+0
Identity = 377/619 (60.90%), Postives = 452/619 (73.02%), Query Frame = 0
Match: A0A5B6YNM8 (YTH domain-containing protein {ECO:0000259|PROSITE:PS50882})
HSP 1 Score: 714.146 bits (1842), Expect = 0.000e+0
Identity = 377/619 (60.90%), Postives = 452/619 (73.02%), Query Frame = 0
Query: 1 MEESGQQGPDRVVPVSNSTSPVAVESH---FSPDNRIEQILQPKEDKVVSAS-SLNTTIAGPPSIITGPPEILASSGALATSYQPNAYAPLEQSFYYGGYENNAGNWGEYPNYVNANNLQIIPPAMFNDNSSLFYPSGYSFDTQMAYGQFPPLASPMSPFLVDGQLYSPHQIPMSPNFYPQSISPGLPHVGSSHSMSQTEMATPVSTGQDSVNDNMLLGPGSGYYLHFGSFPASSAPANS-SLGLYKYPGEFGSGENPLIRSNSNDTGNILSPLTPGAVYTQPVGILGSYDHSLAQASQQQIPF---------TRRYHNSTSSRMSNYGN-----WDASRSNRFTPDKGGRR--DRDSISISADSHGNANDRNRGPRALKPKIKTSTEEKAAPGVAKAGASTSGVNLDLYNQPDFVTDYERAKFFVIKSFSEDNVHKSIKYCVWASTPLGNRKLDAAFQEAKDSNSIYPVFLFFSVNASGQFCGVAEMTGPVDFENDADYWQQDRWSGQFPVKWHIIKDIPNGRFRHILLDNNENKPVTHSRDSQEVKLEQGLAMLKIFKEHEADTSMLDDFVYYDEKERSLQEKRAKQSSPG------KIPDASITQLSENLAGTLHL 592
MEE+ QQG DR+ P S STS + P++ EQ L PK++++VSA+ S + I GPP +T PE L +SGA T Y NAY+P E +FYYGGYEN+ NW EY +YVN + LQ++PPAM+NDN SL + SGY FD+QMAYGQF P+ASP+SP +VDGQLYSPHQI SP + PQ +SP +PHV S+ +SQTE+ TP S GQ+ ++DNML GPGSGY++HFGS NS S G YK+ GEFGSGE RSN +DT LSPLT VY QP+GILG Y+H++ Q SQQQ PF RRY S + SNYGN W A + NR TPDK GRR DRDSISI S ++DRNRGPRA KPK K++TEE ++ G+ K GASTSGV DLYN+ DFVT+YE AKFF+IKSFSEDNVHKSIKY +WASTPLGNRKLDAA+ EAK+ PVFL FSVNASGQFCGVAEM GPVDFENDADYWQQDRWSGQFPV+WHIIKD+PN FRHILL+NN+NKPVTHSRDSQEVKLEQG+ MLKIFK+H ADTS+LDDF +YDE+E+ LQE++A+Q + + DASI QLS+N A + L
Sbjct: 1 MEEASQQGEDRITPTSTSTSISTLSGGRRPVKPNHSTEQPLSPKDERIVSANPSSDAAITGPPRDVTEQPESLDTSGAPTTIYPLNAYSPQEHTFYYGGYENSTSNWDEYSHYVNPSGLQVVPPAMYNDNPSLVFHSGYGFDSQMAYGQFSPMASPLSPIMVDGQLYSPHQISFSPTYCPQPVSPSVPHVSSTLPISQTELITPGSGGQEGLSDNMLFGPGSGYFVHFGSLGGGELSGNSYSTGFYKFQGEFGSGELMPNRSNPSDTSRFLSPLTSTTVYPQPIGILGPYEHNVGQISQQQRPFHGFGLSSSPARRYPYGGSYQSSNYGNASISHWAADQQNRLTPDKVGRRERDRDSISIPNASQCISSDRNRGPRASKPKGKSTTEESSSSGIGKNGASTSGVYFDLYNRADFVTNYENAKFFIIKSFSEDNVHKSIKYNIWASTPLGNRKLDAAYHEAKEMKGHCPVFLLFSVNASGQFCGVAEMVGPVDFENDADYWQQDRWSGQFPVQWHIIKDVPNSLFRHILLENNDNKPVTHSRDSQEVKLEQGIEMLKIFKDHVADTSILDDFDFYDEREKVLQERKARQQTISTKNASVTLADASINQLSDNFAEAIQL 619
BLAST of XM_017387538.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YNS7 (YTH domain-containing protein {ECO:0000259|PROSITE:PS50882})
HSP 1 Score: 710.294 bits (1832), Expect = 0.000e+0
Identity = 374/620 (60.32%), Postives = 452/620 (72.90%), Query Frame = 0
Match: A0A5B6YNS7 (YTH domain-containing protein {ECO:0000259|PROSITE:PS50882})
HSP 1 Score: 710.294 bits (1832), Expect = 0.000e+0
Identity = 374/620 (60.32%), Postives = 452/620 (72.90%), Query Frame = 0
Query: 1 MEESGQQGPDRVVPVSNSTSPVAVESH---FSPDNRIEQILQPKEDKVVSAS-SLNTTIAGPPSIITGPPEILASSGALATSYQPNAYAPLEQSFYYGGYENNAGNWGEYPNYVNANNLQIIPPAMFNDNSSLFYPSGYSFDTQMAYGQFPPLASPMSPFLVDGQLYSPHQIPMSPNFYPQSISPGLPHVGSSHSMSQTEMATPVSTGQDSVNDNMLLGPGSGYYLHFGSFPASSAPANS-SLGLYKYPGEFGSGENPLIRSNSNDTGNILSPLTPGAVYTQPVGILGSYDHSLAQASQQQIPF---------TRRYHNSTSSRMSNYGN-----WDASRSNRFTPDKGGRR--DRDSISISADSHGNANDRNRGPRALKPKIKTSTEEKAAPGVAKAGASTSGVNLDLYNQPDFVTDYERAKFFVIKSFSEDNVHKSIKYCVWASTPLGNRKLDAAFQEAKDSNSIYPVFLFFSVNASGQFCGVAEMTGPVDFENDADYWQQDRWSGQFPVKWHIIKDIPNGRFRHILLDNNENKPVTHSRDSQEVKLEQGLAMLKIFKEHEADTSMLDDFVYYDEKERSLQEKRAKQ------SSPGKIPDASITQLSENLAGTLHLK 593
MEE+ QQG DR+ P S STS + P++ EQ L PK++++VSA+ S + I GPP +T PE L +SGA T Y NAY+P E +FYYGGYEN+ NW EY +YVN + LQ++PPAM+NDN SL + SGY FD+QMAYGQF P+ASP+SP +VDGQLYSPHQI SP + PQ +SP +PHV S+ +SQTE+ TP S GQ+ ++DNML GPGSGY++HFGS NS S G YK+ GEFGSGE RSN +DT LSPLT VY QP+GILG Y+H++ Q SQQQ PF RRY S + SNYGN W A + NR TPDK GRR DRDSISI S ++DRNRGPRA KPK K++TEE ++ G+ K GASTSGV DLYN+ DFVT+YE AKFF+IKSFSEDNVHKSIKY +WASTPLGNRKLDAA+ EAK+ PVFL FSVNASGQFCGVAEM GPVDF+NDADYWQQDRWSGQFPV+WHIIKD+PNG FRHILL+NN+NKPVTHSRDSQEVKLE+G+ MLKIFK+HEADTS+LDDF YDE+E++ QE++A+Q +S + DA I Q +N + L L+
Sbjct: 1 MEEASQQGEDRITPTSTSTSISTLSGGRRPVKPNHSTEQPLSPKDERIVSANPSSDAAITGPPRDVTEQPESLDTSGAPTTIYPLNAYSPQEHTFYYGGYENSTSNWDEYSHYVNPSGLQVVPPAMYNDNPSLVFHSGYGFDSQMAYGQFSPMASPLSPIMVDGQLYSPHQISFSPTYCPQPVSPSVPHVSSTLPISQTELITPGSGGQEGLSDNMLFGPGSGYFVHFGSLGGGELSGNSYSTGFYKFQGEFGSGELMPNRSNPSDTSRFLSPLTSTTVYPQPIGILGPYEHNVGQISQQQRPFHGFGLSSSPARRYPYGGSYQSSNYGNASISHWAADQQNRLTPDKVGRRERDRDSISIPNASQCISSDRNRGPRASKPKGKSTTEESSSSGIGKNGASTSGVYFDLYNRADFVTNYENAKFFIIKSFSEDNVHKSIKYNIWASTPLGNRKLDAAYHEAKEMKGCCPVFLLFSVNASGQFCGVAEMIGPVDFDNDADYWQQDRWSGQFPVQWHIIKDVPNGLFRHILLENNDNKPVTHSRDSQEVKLEKGIEMLKIFKDHEADTSILDDFNIYDEREKASQERKARQRTSSTKNSSVTLADACINQFYDNFSEALQLE 620
BLAST of XM_017387538.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YN59 (YTH domain-containing protein {ECO:0000259|PROSITE:PS50882})
HSP 1 Score: 701.819 bits (1810), Expect = 0.000e+0
Identity = 370/620 (59.68%), Postives = 453/620 (73.06%), Query Frame = 0
Match: A0A5B6YN59 (YTH domain-containing protein {ECO:0000259|PROSITE:PS50882})
HSP 1 Score: 701.819 bits (1810), Expect = 0.000e+0
Identity = 370/620 (59.68%), Postives = 453/620 (73.06%), Query Frame = 0
Query: 1 MEESGQQGPDRVVPVSNSTSPVAVESH---FSPDNRIEQILQPKEDKVVSAS-SLNTTIAGPPSIITGPPEILASSGALATSYQPNAYAPLEQSFYYGGYENNAGNWGEYPNYVNANNLQIIPPAMFNDNSSLFYPSGYSFDTQMAYGQFPPLASPMSPFLVDGQLYSPHQIPMSPNFYPQSISPGLPHVGSSHSMSQTEMATPVSTGQDSVNDNMLLGPGSGYYLHFGSFPASSAPANS-SLGLYKYPGEFGSGENPLIRSNSNDTGNILSPLTPGAVYTQPVGILGSYDHSLAQASQQQIPF----------TRRYHNSTSSRMSNYG-----NWDASRSNRFTPDKGGRR--DRDSISISADSHGNANDRNRGPRALKPKIKTSTEEKAAPGVAKAGASTSGVNLDLYNQPDFVTDYERAKFFVIKSFSEDNVHKSIKYCVWASTPLGNRKLDAAFQEAKDSNSIYPVFLFFSVNASGQFCGVAEMTGPVDFENDADYWQQDRWSGQFPVKWHIIKDIPNGRFRHILLDNNENKPVTHSRDSQEVKLEQGLAMLKIFKEHEADTSMLDDFVYYDEKERSLQEKRAKQSSPG------KIPDASITQLSENLAGTLHL 592
MEE+ QQG DR+ P S STS + P++ EQ L PK++++VSA+ S + + GPP+ + PE L SSGAL T+Y P+AY+P EQ+FYYGG++N+ GNW EY +YVN N LQ++PP +NDNSSL + SGY FDTQMAYGQF P+A P+SP +VDGQLYSPHQIP+SP +YPQS+SP +PHV S+ +S+TE+ TP + GQ+ + DNML GPGSGY++HFG S NS S G +KYPGE RSN ++T PLT AVY P+GILGSY+H++ Q SQQQ PF RRY S S SNYG +W A + NRF PDKGGRR DRDSI I +DS ++DRNRGPRA KPK K++TEE ++ + K G TSG++ DLYN+PDFVT+YE AKFFVIKS SEDNVHKSIKY +WASTPLGNRKLDAA+ EAK+ PVFL FSVNASGQFCGVAEM GPVDFENDADYWQQDRWSGQFPV+WHIIKD+PN FRHILL+NN+NKPVTHSRDSQEVKLEQG+ MLKIFK+H ADTS+LDDF +YDE+E+ LQE++A+Q + + DASI QLS+N A + L
Sbjct: 1 MEEASQQGEDRITPTSTSTSISTLSGGRRPVKPNHSTEQPLSPKDERIVSANPSPDAAVTGPPNDVIEQPESLDSSGALTTAYPPSAYSPQEQTFYYGGFDNSTGNWDEYSHYVNPNGLQVVPPTTYNDNSSLGFHSGYGFDTQMAYGQFSPMAGPLSPIMVDGQLYSPHQIPLSPPYYPQSVSPSVPHVSSALPISKTELTTPGTGGQEGLGDNMLFGPGSGYFVHFGGGDFS---GNSYSTGFFKYPGELLPN-----RSNPSETSGF--PLTSAAVYPHPIGILGSYEHNVGQISQQQRPFHGFGLASSSSARRYGGSYQS--SNYGSASISHWAADQWNRFAPDKGGRRERDRDSICIPSDSQRISSDRNRGPRASKPKGKSTTEESSSSAIGKNGTPTSGLHFDLYNRPDFVTNYENAKFFVIKSLSEDNVHKSIKYSIWASTPLGNRKLDAAYHEAKEMKGHCPVFLLFSVNASGQFCGVAEMVGPVDFENDADYWQQDRWSGQFPVQWHIIKDVPNSLFRHILLENNDNKPVTHSRDSQEVKLEQGIEMLKIFKDHVADTSILDDFDFYDEREKVLQERKARQQTISTKNASVTLADASINQLSDNFAEAIQL 608
BLAST of XM_017387538.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6T1E5 ((YTH domain-containing protein ECT3-like {ECO:0000313|RefSeq:XP_027072143.1}))
HSP 1 Score: 681.789 bits (1758), Expect = 0.000e+0
Identity = 356/611 (58.27%), Postives = 444/611 (72.67%), Query Frame = 0
Match: A0A6P6T1E5 ((YTH domain-containing protein ECT3-like {ECO:0000313|RefSeq:XP_027072143.1}))
HSP 1 Score: 681.789 bits (1758), Expect = 0.000e+0
Identity = 356/611 (58.27%), Postives = 444/611 (72.67%), Query Frame = 0
Query: 1 MEESGQQGPDRVVPVSNSTSPVAVESHFSPDNRIEQILQPKEDKVVSAS-SLNTTIAGPPSIITGPPEILASSGALATSYQPNAYAPLEQSFYYGGYENNAGNWGEYPNYVNANNLQIIPPAMFNDNSSLFYPSGYSFDTQMAYGQFPPLASPMSPFLVDGQLYSPHQIPMSPNFYPQSISPGLPHVGSSHSMSQTEMATPVSTGQDSVNDNMLLGPGSGYYLHFGSFPASSAPANSSLGLYKYPGEFGSGENPLIRSNSNDTGNILSPLTPGAVYTQPVGILGSYDHSLAQASQQQIPFT-----RRYHNSTSSRMSNYG-----NWDASRSNRFTPDKGGRRDR--DSISISADSHGNANDRNRGPRALKPKIKTSTEEKAAPGVAKAGASTSGVNLDLYNQPDFVTDYERAKFFVIKSFSEDNVHKSIKYCVWASTPLGNRKLDAAFQEAKDSNSIYPVFLFFSVNASGQFCGVAEMTGPVDFENDADYWQQDRWSGQFPVKWHIIKDIPNGRFRHILLDNNENKPVTHSRDSQEVKLEQGLAMLKIFKEHEADTSMLDDFVYYDEKERSLQEKRAKQ------SSPGKIPDASITQLSENLAGTLHL 592
MEE+GQQ DR P+S S A+E H N EQ L PK+++++SA+ S + I+G P P L SGAL T + + P EQSFY+GG +N GNW E+ NYVN N+L ++PP M+N+N SLF+P GY +DTQMAYGQF P+ SP+S ++DGQ YSPHQIP++P ++P ++SPGLPHV S+ ++SQT++ P ++GQ+S+ DN L GP SG+Y+ FGSF NSSLG YK+PG+FGS E +S+S ++ +S LT GAVY QP+GILG Y+ ++AQA Q + R Y +S S + YG +WD R NR DKGGRRDR DS++ S DS G ++DRNRGPRA KPK K S EE A+ G+ K STSG LD YN P+FVTDYE AKFFVIKSFSEDNVHKSIKY +WASTPLGNRKLDAA+ EAKD PVFLFFSVNASGQFCG+AEM GPVDFENDA+YWQQDRWSGQFPVKWH++KD+PN RFRHILL+NN+NKPVTHSRDSQEVKLEQG+ MLKIFK++EADTS+LDDF +YDE+E++L EK+AKQ +S + D I QLS+NLA TL+L
Sbjct: 1 MEETGQQSFDRFAPIS-SPGERAIELH----NVTEQPLSPKDERIISANPSPDAAISGAPRNAKDQPVPLDKSGALTTVHPLDV--PHEQSFYFGGLDNGTGNWDEHSNYVNPNSLHVVPPGMYNENPSLFFPPGYGYDTQMAYGQFSPIPSPISTIMIDGQFYSPHQIPVTPPYFP-AVSPGLPHVSSALTVSQTDLMAPATSGQESLVDNALFGPSSGFYVPFGSFGGGDLSGNSSLGFYKFPGDFGSAEGLSNQSSSLESSRYMSQLTSGAVYPQPIGILGPYEQNVAQAPYQGLGLASSSSARHYPHSGSYQGMKYGTGSSSHWDNQR-NRLGLDKGGRRDREKDSLNYSNDSLGISSDRNRGPRASKPKSKNSAEENASSGIRKDVESTSGFQLDQYNSPEFVTDYENAKFFVIKSFSEDNVHKSIKYGIWASTPLGNRKLDAAYHEAKDMTGNSPVFLFFSVNASGQFCGIAEMVGPVDFENDAEYWQQDRWSGQFPVKWHVVKDVPNSRFRHILLENNDNKPVTHSRDSQEVKLEQGIEMLKIFKDYEADTSLLDDFTFYDEREKALLEKKAKQRASVTGNSTIALADP-INQLSDNLADTLNL 601
BLAST of XM_017387538.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A118JVG9 ((YTH domain-containing protein {ECO:0000313|EMBL:KVH93686.1}))
HSP 1 Score: 680.633 bits (1755), Expect = 0.000e+0
Identity = 342/584 (58.56%), Postives = 438/584 (75.00%), Query Frame = 0
Match: A0A118JVG9 ((YTH domain-containing protein {ECO:0000313|EMBL:KVH93686.1}))
HSP 1 Score: 680.633 bits (1755), Expect = 0.000e+0
Identity = 342/584 (58.56%), Postives = 438/584 (75.00%), Query Frame = 0
Query: 30 PDNRIEQILQPKEDKVVSAS-SLNTTIAGPPSIITGPPEILASSGALATSYQPNAYAPLEQSFYYG--GYENNAGNWGEYPNYVNANNLQIIPPAMFNDNSSLFYPSGYSFDTQMAYGQFPPLASPMSPFLVDGQLYSPHQIPMSPNFYPQSISPGLPHVGSSHSMSQTEMATPVSTGQDSVNDNMLLGPGSGYYLHFGSFPASSAPANSSLGLYKYPGEFGSGENPLIRSNSNDTGNILSPLTPGAVYTQPVGILGSYDHSLAQASQQQIPF---------TRRYHNSTSSRMSNYGNW--DASRSNRFTPDKGGR-RDRDSISISADSHGNANDRNRGPRALKPKIKTSTEEKAAPGVAKAGASTSGVNLDLYNQPDFVTDYERAKFFVIKSFSEDNVHKSIKYCVWASTPLGNRKLDAAFQEAKDSNSIYPVFLFFSVNASGQFCGVAEMTGPVDFENDADYWQQDRWSGQFPVKWHIIKDIPNGRFRHILLDNNENKPVTHSRDSQEVKLEQGLAMLKIFKEHEADTSMLDDFVYYDEKERSLQEKRAKQSSPGKIPDASITQLSENLAGTLHLKVIEDK 598
P N +++ L PK++++VS + S + I GP I+ PE L +SGA N + P EQ+++YG GYE+ + NWGEY NYV+ANNLQI+PPA++NDN+SL + Y FD Q+AYGQF P+ASP+SP ++DGQL+SPHQ+PMSP++Y Q SPGLPHV S+ T++ATP ++GQ++++DN+ LGPGSGYYLH+G++ + N+SLG YKYPG+ GSGE+ RS S+DTG+ SP+T GA+Y PVGILGSY+H Q QQQ + TRRY S S R NYG++ +ASR NR DKGG+ R+RD IS+ ++SHG +DRNRGPRA KPK + S E+ +P K + S +++LYN+PDFVT Y+ AKFFV+KSFSEDNVHKSIKY VWASTPLGNRKLDAA+QEAK + PVFLFFSVNASGQFCGVAEM GPVDF NDA+YWQQDRWSGQF VKWHIIKD+PN RFRHIL++NN+NKPVTHSRDSQEVKLE G+ MLKIFK+H+AD S+LDDF YYDE+E+ LQEKR+K + +ITQL++ +A +LH++ EDK
Sbjct: 111 PFNYMDKPLSPKDERIVSPNPSPDAAITGPRRNISNQPEALNASGAQTPVNPSNIFTPPEQTYFYGASGYEDGSVNWGEYSNYVHANNLQIVPPAIYNDNASLLFHPAYGFDAQVAYGQFSPVASPLSPIMIDGQLFSPHQVPMSPSYYSQPASPGLPHVTSTLP---TDLATPANSGQEALHDNVFLGPGSGYYLHYGTYGGGNPSGNNSLGFYKYPGDIGSGESVSNRSMSSDTGSYTSPITSGALYPAPVGILGSYEHVFGQIPQQQTAYGYGSVSGSSTRRYPQSGSFRGYNYGSFHGEASRLNRLVTDKGGKHRERDVISMISESHGTTSDRNRGPRASKPK-ENSACEQISPADGKNDLA-SRPDIELYNRPDFVTTYDNAKFFVVKSFSEDNVHKSIKYGVWASTPLGNRKLDAAYQEAKGAGGTCPVFLFFSVNASGQFCGVAEMVGPVDFVNDAEYWQQDRWSGQFRVKWHIIKDVPNSRFRHILVENNDNKPVTHSRDSQEVKLEVGIVMLKIFKDHDADMSILDDFSYYDEREKDLQEKRSKVTKSAPAAVNAITQLADKVAESLHVE--EDK 687
BLAST of XM_017387538.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068V184 (YTH domain-containing protein {ECO:0000259|PROSITE:PS50882})
HSP 1 Score: 677.937 bits (1748), Expect = 0.000e+0
Identity = 355/611 (58.10%), Postives = 442/611 (72.34%), Query Frame = 0
Match: A0A068V184 (YTH domain-containing protein {ECO:0000259|PROSITE:PS50882})
HSP 1 Score: 677.937 bits (1748), Expect = 0.000e+0
Identity = 355/611 (58.10%), Postives = 442/611 (72.34%), Query Frame = 0
Query: 1 MEESGQQGPDRVVPVSNSTSPVAVESHFSPDNRIEQILQPKEDKVVSAS-SLNTTIAGPPSIITGPPEILASSGALATSYQPNAYAPLEQSFYYGGYENNAGNWGEYPNYVNANNLQIIPPAMFNDNSSLFYPSGYSFDTQMAYGQFPPLASPMSPFLVDGQLYSPHQIPMSPNFYPQSISPGLPHVGSSHSMSQTEMATPVSTGQDSVNDNMLLGPGSGYYLHFGSFPASSAPANSSLGLYKYPGEFGSGENPLIRSNSNDTGNILSPLTPGAVYTQPVGILGSYDHSLAQASQQQIPFT-----RRYHNSTSSRMSNYG-----NWDASRSNRFTPDKGGRRDR--DSISISADSHGNANDRNRGPRALKPKIKTSTEEKAAPGVAKAGASTSGVNLDLYNQPDFVTDYERAKFFVIKSFSEDNVHKSIKYCVWASTPLGNRKLDAAFQEAKDSNSIYPVFLFFSVNASGQFCGVAEMTGPVDFENDADYWQQDRWSGQFPVKWHIIKDIPNGRFRHILLDNNENKPVTHSRDSQEVKLEQGLAMLKIFKEHEADTSMLDDFVYYDEKERSLQEKRAKQ------SSPGKIPDASITQLSENLAGTLHL 592
MEE+GQQ DR P+S S A+E H N EQ L PK+++++SA+ S + I+G P P L SGAL T + + P EQSFY+GG +N GNW E+ NYVN N+L ++PP M+N+N SLF+P GY +DTQMAYGQF P+ SP+S ++DGQ YSPHQIP++P ++P ++SPGLPHV S+ ++SQT++ P ++GQ+S+ DN L GP SG+Y+ FGSF NSSLG YK+PG+FGS E +S+S ++ +S LT GAVY QP+GILG Y+ +LAQA Q + R Y +S S + YG +WD R NR DKGGRRDR DS++ S DS G ++DRNRGPRA KPK K S EE A G+ K STSG LD YN P+FVTD+E AKFFVIKSFSEDNVHKSIKY +WASTPLGNRKLDAA+ EAKD PVFLFFSVNASGQFCG+AEM GPVDFENDA+YWQQDRWSGQFPVKWH++KD+PN RFRHILL+NN+NKPVTHSRDSQEVKLE G+ MLKIFK++EADTS+LDDF +YDE+E++L EK+AKQ +S + D I QLS+NLA TL+L
Sbjct: 1 MEETGQQSFDRFAPIS-SPGERAIELH----NVTEQPLSPKDERIISANPSPDAAISGAPRNAKDQPVPLDKSGALTTVHPLDV--PHEQSFYFGGLDNGTGNWDEHSNYVNPNSLHVVPPGMYNENPSLFFPPGYGYDTQMAYGQFSPIPSPISTIMIDGQFYSPHQIPVTPPYFP-AVSPGLPHVSSALTVSQTDLMAPATSGQESLVDNALFGPSSGFYVPFGSFGGGDLSGNSSLGFYKFPGDFGSAEGLSNQSSSLESSRYMSQLTSGAVYPQPIGILGPYEQNLAQAPYQGLGLASSSSARHYPHSGSYQGMKYGTGSSSHWDNQR-NRLGLDKGGRRDREKDSLNYSNDSLGISSDRNRGPRASKPKSKNSAEENALSGIRKDVESTSGFQLDQYNSPEFVTDHENAKFFVIKSFSEDNVHKSIKYGIWASTPLGNRKLDAAYHEAKDMTGNSPVFLFFSVNASGQFCGIAEMVGPVDFENDAEYWQQDRWSGQFPVKWHVVKDVPNSRFRHILLENNDNKPVTHSRDSQEVKLEHGIEMLKIFKDYEADTSLLDDFTFYDEREKALLEKKAKQRASVTGNSTIALADP-INQLSDNLADTLNL 601
BLAST of XM_017387538.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZV83 (YTH domain-containing protein {ECO:0000259|PROSITE:PS50882})
HSP 1 Score: 676.781 bits (1745), Expect = 0.000e+0
Identity = 356/615 (57.89%), Postives = 438/615 (71.22%), Query Frame = 0
Match: A0A5J4ZV83 (YTH domain-containing protein {ECO:0000259|PROSITE:PS50882})
HSP 1 Score: 676.781 bits (1745), Expect = 0.000e+0
Identity = 356/615 (57.89%), Postives = 438/615 (71.22%), Query Frame = 0
Query: 1 MEESGQQGPDRVVPVSNSTSPVAVESHFSPDNRIEQILQPKEDKVVSAS-SLNTTIAGPPSIITGPPEILASSGALATSYQPNAYAPLEQSFYYGGYENNAGNWGEYPNYVNANNLQIIPPAMFNDNSSLFYPSGYSFDTQMAYGQFPPLASPMSPFLVDGQLYSPHQIPMSPNFYPQSISPGLPHVGSSHSMSQTEMATPVSTGQDSVNDNMLLGPGSGYYLHFGSFPASSAPANS-SLGLYKYPGEFGSGENPLIRSNSNDTGNILSPLTPGAVYTQPVGILGSYDHSLAQASQQQIPF----------TRRYHNSTSSRMSNYGN-----WDASRSNRFTPDKGGRRDRDSISISADSHGNANDRNRGPRALKPKIKTSTEEKAAPGVAKAGASTSGVNLDLYNQPDFVTDYERAKFFVIKSFSEDNVHKSIKYCVWASTPLGNRKLDAAFQEAKDSNSIYPVFLFFSVNASGQFCGVAEMTGPVDFENDADYWQQDRWSGQFPVKWHIIKDIPNGRFRHILLDNNENKPVTHSRDSQEVKLEQGLAMLKIFKEHEADTSMLDDFVYYDEKERSLQEKRAKQSSPGK-----IPDASITQLSENLAGTLHLK 593
ME++ QQG DR+ P S S+ VA DN EQ PK++++VSA+ S + I G P + G P+ L SGA T Y NAY+P E +FY+GGY+N+ NW EY +YVN N LQ++PPAM+N+N SL + SGY FD+QMAYGQF PLA P+SP +VDGQLYSPHQI SP + PQ +SP + +V S+ +SQTE+ TP S GQ+ ++DNM GPGSGY++HFGS NS S G YK+ GEFGSGE +SN +DT LSPLT AVY QP+GILG Y+H++ Q SQQ PF R Y + S + SNYG+ W + NR TPDKGGRR+R SI S ++D NRGPRA KPK K +TEE G+ K GASTSGV LDL N+PDFVT+YE AKFF+IKSFSEDNVH+SIKY +WASTPLGNRKLDAA+ EAK+ PVFL FSVNASGQFCGVAEM GPVDFENDADYWQQDRWSGQFPV+WHIIKD+PN FRHILL+NN+NKPVTHSRDSQEV LE+G+ MLKIFK+H+ADTS+LDDF YDE+E++LQE++A+ + K + DASI Q ++ + L L+
Sbjct: 1 MEDASQQGQDRITPTSTSSG-VAGGRPVRLDNSTEQPPLPKDERIVSANPSPDAAITGSPRDLMGQPQSLDMSGAPTTIYPLNAYSPQEHTFYHGGYDNSTSNWDEYSHYVNPNGLQVVPPAMYNNNPSLVFHSGYGFDSQMAYGQFSPLAGPLSPVMVDGQLYSPHQISFSPPYCPQPVSPSVSNVSSALPISQTELMTPGSGGQERLSDNMPFGPGSGYFVHFGSLGGGELSGNSYSTGFYKFQGEFGSGELMPNQSNPSDTARFLSPLTSAAVYPQPIGILGPYEHNVGQISQQPRPFHGFGLASNSPARCYPHGGSYQSSNYGSASISRWATDQRNRLTPDKGGRRERGRDSIPNASQCISSDHNRGPRASKPKGKNTTEESYLSGLGKNGASTSGVYLDLCNRPDFVTNYENAKFFIIKSFSEDNVHRSIKYNIWASTPLGNRKLDAAYHEAKEMKGHCPVFLLFSVNASGQFCGVAEMVGPVDFENDADYWQQDRWSGQFPVQWHIIKDVPNSLFRHILLENNDNKPVTHSRDSQEVNLEKGIEMLKIFKDHDADTSILDDFNIYDEREKALQERKARLQTSTKNASVTLADASINQFCDSFSEALQLE 614
BLAST of XM_017387538.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6SPD8 ((YTH domain-containing protein ECT4-like {ECO:0000313|RefSeq:XP_027067789.1, ECO:0000313|RefSeq:XP_027072127.1}))
HSP 1 Score: 676.781 bits (1745), Expect = 0.000e+0
Identity = 357/618 (57.77%), Postives = 444/618 (71.84%), Query Frame = 0
Match: A0A6P6SPD8 ((YTH domain-containing protein ECT4-like {ECO:0000313|RefSeq:XP_027067789.1, ECO:0000313|RefSeq:XP_027072127.1}))
HSP 1 Score: 676.781 bits (1745), Expect = 0.000e+0
Identity = 357/618 (57.77%), Postives = 444/618 (71.84%), Query Frame = 0
Query: 1 MEESGQQGPDRVVPVSNSTSPVAVESHFSPDNRIEQILQPKEDKVVSAS-SLNTTIAGPPSIITGPPEILASSGALATSYQPNAYAPLEQSFYYGGYENNAGNWGEYPNYVNANNLQIIPPAMFNDNSSLFYPSGYSFDTQMAYGQFPPLASPMSPFLVDGQLYSPHQIPMSPNFYPQSISPGLPHVGSSHSMSQTEMATPVSTGQDSVNDNMLLGPGSGYYLHFGSFPASSAPANSSLGLYKYPGEFGSGENPLIRSNSNDTGNILSPLTPGAVYTQPVGILGSYDHSLAQAS--QQQIPF----------TRRYHNSTSSRMSNYG-----NWDASRSNRFTPDKGGRRDR--DSISISADSHGNANDRNRGPRALKPKIKTSTEEKAAPGVAKAGASTSGVNLDLYNQPDFVTDYERAKFFVIKSFSEDNVHKSIKYCVWASTPLGNRKLDAAFQEAKDSNSIYPVFLFFSVNASGQFCGVAEMTGPVDFENDADYWQQDRWSGQFPVKWHIIKDIPNGRFRHILLDNNENKPVTHSRDSQEVKLEQGLAMLKIFKEHEADTSMLDDFVYYDEKERSLQEKRAKQ------SSPGKIPDASITQLSENLAGTLHL 592
MEE+GQQ DR P+S S A+E H N EQ L PK+++++SA+ S + I+G P P L SGAL T + + P EQSFY+GG +N GNW E+ NYVN N+L ++PP M+N+N SLF+P GY +DTQMAYGQF P+ SP+S ++DGQ YSPHQIP++P ++P ++SPGLPHV S+ ++SQT++ P ++GQ+S+ DN L GP SG+Y+ FGSF NSSLG YK+PG+FGS E +S+S ++ +S LT GAVY QP+GILG Y+ +LAQ Q P+ R Y +S S + YG +WD R NR DKGGRRDR DS++ S DS G ++DRNRGPRA KPK K S EE A+ G+ K STSG LD YN P+FVTDYE AKFFVIKSFSEDNVHKSIKY +WASTPLGNRKLDAA+ EAKD PVFLFFSVNASGQFCG+AEM GPVDFENDA+YWQQDRWSGQFPVKWH++KD+PN RFRHILL+NN+NKPVTHSRDSQEVKLEQG+ MLKIFK++EADTS+LDDF +YDE+E++L EK+AKQ +S + D I QLS+NLA TL+L
Sbjct: 1 MEETGQQSFDRFAPIS-SPGERAIELH----NVTEQPLSPKDERIISANPSPDAAISGAPRNAKDQPVPLDKSGALTTVHPLDV--PHEQSFYFGGLDNGTGNWDEHSNYVNPNSLHVVPPGMYNENPSLFFPPGYGYDTQMAYGQFSPIPSPISTIMIDGQFYSPHQIPVTPPYFP-AVSPGLPHVSSALTVSQTDLMAPATSGQESLVDNALFGPSSGFYVPFGSFGGGDLSGNSSLGFYKFPGDFGSAEGLSNQSSSLESSRYMSQLTSGAVYPQPIGILGPYEQNLAQLLIFGLQAPYQGLGLASSSSARHYPHSGSYQGMKYGTGSSSHWDNQR-NRLGLDKGGRRDREKDSLNYSNDSLGISSDRNRGPRASKPKSKNSAEENASSGIRKDVESTSGFQLDQYNSPEFVTDYENAKFFVIKSFSEDNVHKSIKYGIWASTPLGNRKLDAAYHEAKDMTGNSPVFLFFSVNASGQFCGIAEMVGPVDFENDAEYWQQDRWSGQFPVKWHVVKDVPNSRFRHILLENNDNKPVTHSRDSQEVKLEQGIEMLKIFKDYEADTSLLDDFTFYDEREKALLEKKAKQRASVTGNSTIALADP-INQLSDNLADTLNL 608
BLAST of XM_017387538.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9UI40 ((YTH domain-containing family protein 2 isoform X2 {ECO:0000313|RefSeq:XP_011093934.1}))
HSP 1 Score: 669.848 bits (1727), Expect = 0.000e+0
Identity = 354/605 (58.51%), Postives = 439/605 (72.56%), Query Frame = 0
Match: A0A6I9UI40 ((YTH domain-containing family protein 2 isoform X2 {ECO:0000313|RefSeq:XP_011093934.1}))
HSP 1 Score: 669.848 bits (1727), Expect = 0.000e+0
Identity = 354/605 (58.51%), Postives = 439/605 (72.56%), Query Frame = 0
Query: 1 MEESGQQGPDRVVPVSNSTSPVAVESHFSPDNRIEQILQPKEDKVVSASSLNTTIAGPPSIITGPPEILASSGALATSYQPNAYAPLEQSFYYGGYENNAGNWGEYPNYVNANNLQIIPPAMFNDNSSLFYPSGYSFDTQMAYGQFPPLASPMSPFLVDGQLYSPHQIPMSPNFYPQSISPGLPHVGSSHSMSQTEMATPVSTGQDSVNDNMLLGPGSGYYLHFGSFPASSAPANSSLGLYKYPGEFGSGENPLIRSNSNDTGNILSPLTPGAVYTQPVGILGSYDHSLAQASQQQIPFTRRYHNSTSSRMSNYGNWDA-----SRSNRFTPDKGGRR--DRDSISISADSHGNANDRNRGPRALKPKIKTSTEEKAAPGVAKAGASTSGVNLDLYNQPDFVTDYERAKFFVIKSFSEDNVHKSIKYCVWASTPLGNRKLDAAFQEAKDSNSIYPVFLFFSVNASGQFCGVAEMTGPVDFENDADYWQQDRWSGQFPVKWHIIKDIPNGRFRHILLDNNENKPVTHSRDSQEVKLEQGLAMLKIFKEHEADTSMLDDFVYYDEKERSLQEKRAKQ--SSPGK----IPDASITQLSENLAGTLHL 592
ME++ +Q D + PV S AVE H N EQ L PK+++V SA+ I+ P P I +SGAL + N+Y P EQ++Y+GGYEN +GNW E+ YVNANNL +IPP M+NDNSSLF+P GY FD+QMAYGQF PLASP+SP ++DGQL+SPHQ+P++P +YP ++SPG PHV S+ SQTE+ S+ Q+++ DN GPGSGYYL FGSF +S LG+YK+PG+FGS + RS+S DT +SPLT G VY QP+GILGSY+ ++ QA Q NS + +S+ G + + S NRF DKGGRR DRD++SIS D+ G + DRNRGPRA KPK K+ EE + G+ K STSG ++ +N PDF+TDYERAKFFVIKSFSEDN+HKSIKY VWASTPLGNRKLDAA++E+K+ I P+FL FSVNASGQFCGVAEM GPVDFENDADYWQQDRWSGQFPVKWHIIKD+PN RFRHILL+NN+NKPVTHSRDSQEVKLEQG+ ML+IFK H+ADTS+LDDF +YDE+E++L E++AKQ SS G + SI QLS+NLA TL L
Sbjct: 1 MEDASKQSLDGLTPVP-SAGDGAVELH----NLTEQQLSPKDERVASANPSPDAISEAPRSTKNQPAISETSGALTNMHPFNSYTPPEQAYYFGGYENGSGNWDEH--YVNANNLHVIPPGMYNDNSSLFFPPGYGFDSQMAYGQFSPLASPLSPIMIDGQLFSPHQMPVNPPYYPSAVSPGPPHVTSAVPASQTELVPSGSSSQENLIDNAFFGPGSGYYLPFGSFGGGDLSGSSGLGVYKFPGDFGSSDPLPSRSSSLDTSRFMSPLTSGTVYPQPIGILGSYEQNVGQAQFQGFGLPS---NSHARHLSHGGPYQSAIGPSSNRNRFYADKGGRRERDRDTVSISTDALGISGDRNRGPRASKPKSKSLPEESSLAGI-KDVESTSGFHIHNFNSPDFITDYERAKFFVIKSFSEDNIHKSIKYGVWASTPLGNRKLDAAYRESKEMEGICPLFLLFSVNASGQFCGVAEMVGPVDFENDADYWQQDRWSGQFPVKWHIIKDVPNSRFRHILLENNDNKPVTHSRDSQEVKLEQGIEMLRIFKNHDADTSLLDDFNFYDEREKTLLERKAKQRASSTGNTAATLATESINQLSDNLAETLRL 594
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6YPC9 | E-Value: 0.000e+0, PID: 60.90 | YTH domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A5B6YNM8 | E-Value: 0.000e+0, PID: 60.90 | YTH domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A5B6YNS7 | E-Value: 0.000e+0, PID: 60.32 | YTH domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A5B6YN59 | E-Value: 0.000e+0, PID: 59.68 | YTH domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A6P6T1E5 | E-Value: 0.000e+0, PID: 58.27 | (YTH domain-containing protein ECT3-like {ECO:0000... [more] |
| A0A118JVG9 | E-Value: 0.000e+0, PID: 58.56 | (YTH domain-containing protein {ECO:0000313|EMBL:K... [more] |
| A0A068V184 | E-Value: 0.000e+0, PID: 58.10 | YTH domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A5J4ZV83 | E-Value: 0.000e+0, PID: 57.89 | YTH domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A6P6SPD8 | E-Value: 0.000e+0, PID: 57.77 | (YTH domain-containing protein ECT4-like {ECO:0000... [more] |
| A0A6I9UI40 | E-Value: 0.000e+0, PID: 58.51 | (YTH domain-containing family protein 2 isoform X2... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |