Resource Type:
Polypeptide
Name:
XM_017382213.1
Identifier:
XM_017382213.1-protein
Sequence:
MSDVNPAFYIYDDVEDEDVVVVEDVMDLDEEEDDDDEYEDDEDDDDDDEE
DDEAVSTAAIVKNKTTPLSIDDDGSGIEELMSKDNNEIDGLCCPICMEPW
TSEGVHQVCCLPCGHIYGLSCIQKWIRQRQSSRKCPQCKRSCSLKDVRLL
YASRIVVVDEELQKKVQKLEAKCASLDTKHAECVKREDEGKKREAELYLQ
VQQLKERARYLEGMLEHSERTAGSVTASSDFPRSSCTGQFRKTGCSNSFE
LQKEFNIEGARVFDVDASGQVLLIARRLTGMGGLFGLTKISLVAPHDRLD
MQLPSNTKAVRDLRFSPRDRLLLVASLGKKLSIISSQSNTTVLTYDLPAA
AWSCSWDISCSNYAYAGLQNGMLLVFDMRQTREPVKCLAGITCNPIHSLY
SVSPESPSPSGVRTILTASSIGACEWNFGGVDERPFLIPGSDNEGVCVSL
ACSSSNSNIVASYRPKVNMLNKESASQAVPTPSTNAMGNSVVGSHVSYKR
TSSQCFQKLGSTCANVNDIRLPKSAIVDIRNNDAPLFVSGDEARGEITLQ
LLPSLLTVQHLTPQKFPVRDVKFTHGSNSSILGCLCDDILKLYSLKLS
Sequence Length:
598
Sequence Checksum:
b93d6f5c9f4520da855820713a551837
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017382213.1, derives from mRNA, XM_017382213.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017382213.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017382213.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B2T7 ((Putative E3 ubiquitin-protein ligase RFWD3 {ECO:0000313|EMBL:MPA61753.1}) (2.3.2.27 {ECO:0000313|EMBL:MPA61753.1}) (Fragment))
HSP 1 Score: 607.446 bits (1565), Expect = 0.000e+0
Identity = 313/590 (53.05%), Postives = 409/590 (69.32%), Query Frame = 0
Match: A0A5B7B2T7 ((Putative E3 ubiquitin-protein ligase RFWD3 {ECO:0000313|EMBL:MPA61753.1}) (2.3.2.27 {ECO:0000313|EMBL:MPA61753.1}) (Fragment))
HSP 1 Score: 607.446 bits (1565), Expect = 0.000e+0
Identity = 313/590 (53.05%), Postives = 409/590 (69.32%), Query Frame = 0
Query: 47 DDEED-DEAVST-AAIVKNKTTPLSIDDDGSGIEELM---------------SKDNN----------------EIDGLCCPICMEPWTSEGVHQVCCLPCGHIYGLSCIQKWIRQRQSSRKCPQCKRSCSLKDVRLLYASRIVVVDEELQKKVQKLEAKCASLDTKHAECVKREDEGKKREAELYLQVQQLKERARYLEGML-EHSERTAGSVTASSDFPRSSCTG-----QFRKTGCSNSFELQKEFNIEGARVFDVDASGQVLLIARRLTGMGGLFGLTKISLVAPHDRLDMQLPSNTKAVRDLRFSPRDRLLLVASLGKKLSIISSQSNTTVLTYDLPAAAWSCSWDISCSNYAYAGLQNGMLLVFDMRQTREPVKCLAGITCNPIHSLYSVSPESPSPSGVRTILTASSIGACEWNFGGVDERPFLIPGSDNEGVCVSLACSSSNSNIVASYRPKVNMLNKESASQAVPTPSTNAMGNSVVGSHVSYKRTSSQCFQKLGSTCANVNDIRLPKSAIVDIRNNDAPLFVSGDEARGEITLQLLPSLLTVQHLTPQKFPVRDVKFTHGSNSSILGCLCDDILKLYSLKL 597
++EED A++ A++ +T G +E ++ S NN EIDGL C ICME WT+ G HQ+CCLPCGH+YGLSCI++W++Q +S KCPQC R CSLKDVR++YAS+IV VD+E QKKV+ LEAKCASL+ K A K+E E + REA L+LQ+ +L ER YLE +L + R G +TAS + G +F + G S SF LQKE ++G R FDVDAS Q+L+IARRL+GMGG+ LTK+SL+APH+R ++QLP +TKAV+DLR SP RL L+A LGKKLS++S +SN +L+YDLPAAAWSCSWD++ S+Y YAGLQNGMLLVFDMRQT PV+ + G+T PIH+++S+SP+ PSGVR +LTASS+G C+WNFGG+ ERPFL+PGS+N+GVC+SLA +++IVAS+RPKV + + SQ TPST+ MG + GSHV YKR S+ +QKLGST ANVNDIRLPKSAI+D R N PLF SGDE E+ LQ LPSL+ +Q L +K P+RDVK+TH ++ +L CL +D + L+S L
Sbjct: 87 EEEEDFRPAIALPTALLTGPSTSSQEAVIGRSLENVVEENEDSQRRADGGETSSSNNIVEGEENSSAGELNRSEIDGLFCTICMEAWTNGGDHQICCLPCGHLYGLSCIKRWLQQHRSRAKCPQCNRKCSLKDVRVIYASQIVAVDQESQKKVKSLEAKCASLEKKDANWCKKEVEWQSREANLHLQMHELMERTSYLESLLGDMQSRPPGLLTASGACQEHAIFGHNLDSEFDRQGSSGSFVLQKELLVDGTRFFDVDASSQILIIARRLSGMGGMHVLTKMSLIAPHERENIQLPVSTKAVKDLRVSPHGRLALLAFLGKKLSVLSMESNNIILSYDLPAAAWSCSWDLNSSHYVYAGLQNGMLLVFDMRQTIRPVESMIGLTSYPIHTVHSLSPDLTLPSGVRPLLTASSVGLCQWNFGGIKERPFLVPGSENQGVCISLAYCPGSNDIVASFRPKVEFSSDIAFSQPSLTPSTSLMGQGIQGSHVHYKRVGSRGYQKLGSTYANVNDIRLPKSAIID-RENHNPLFASGDEVTCELVLQELPSLMVLQRLKSRKHPIRDVKYTHTLSTGLLSCLSEDTIHLFSANL 675
BLAST of XM_017382213.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RS83 ((E3 ubiquitin-protein like {ECO:0000313|EMBL:PSS32875.1}))
HSP 1 Score: 601.668 bits (1550), Expect = 0.000e+0
Identity = 296/585 (50.60%), Postives = 404/585 (69.06%), Query Frame = 0
Match: A0A2R6RS83 ((E3 ubiquitin-protein like {ECO:0000313|EMBL:PSS32875.1}))
HSP 1 Score: 601.668 bits (1550), Expect = 0.000e+0
Identity = 296/585 (50.60%), Postives = 404/585 (69.06%), Query Frame = 0
Query: 38 YEDDEDDDDDDEEDDEAV--------------STAAIV---------KNKTTPLSIDDDGSGIEELMSKDNNEIDGLCCPICMEPWTSEGVHQVCCLPCGHIYGLSCIQKWIRQRQSSRKCPQCKRSCSLKDVRLLYASRIVVVDEELQKKVQKLEAKCASLDTKHAECVKREDEGKKREAELYLQVQQLKERARYLEGMLEHSERTAGSVTASSD------FPRSSCTGQFRKTGCSNSFELQKEFNIEGARVFDVDASGQVLLIARRLTGMGGLFGLTKISLVAPHDRLDMQLPSNTKAVRDLRFSPRDRLLLVASLGKKLSIISSQSNTTVLTYDLPAAAWSCSWDISCSNYAYAGLQNGMLLVFDMRQTREPVKCLAGITCNPIHSLYSVSPESPSPSGVRTILTASSIGACEWNFGGVDERPFLIPGSDNEGVCVSLACSSSNSNIVASYRPKVNMLNKESASQAVPTPSTNAMGNSVVGSHVSYKRTSSQCFQKLGSTCANVNDIRLPKSAIVDIRNNDAPLFVSGDEARGEITLQLLPSLLTVQHLTPQKFPVRDVKFTHGSNSSILGCLCDDILKLY 593
Y D +++D +D E+D V S A++ +N+ + + + + + +EIDGL CPICM+ WT+ G HQVCCLPCGH+YG SCI++W++QR++S KCPQC R CS+KDVR++YA +IV VD +L+KKV LEAKCAS + K E +E E +++EA L+ QV QL ER YLE +LE ++ + +++ P + +FR G S F LQ+E ++GA+ FDVDAS Q ++ARRL GMGG+ LTK+SL+APH+R ++QLP NTKA RD+R +P RL+L+ASLGKKLS++S +SN TVL+YDLPAAAWSCSWD+S S+Y Y GLQNG LLVFDMRQT P++ G+TCNPIH+++S+ P+ PSGVR++LTASS+G C WNFGG +ERP L+P S+N+GVC++LA S+++IVAS+RPK+ + + SQ TP+T+ MG V GSH+ YK ++C+QKLGST ANVNDIRL KSAI+D +N+D LF S +EA E+ LQ LPS + VQ L QK PVRDVK+TH S +L CL +D L+L+
Sbjct: 44 YNDGDEEDYNDGEEDGPVPPTPRTSSGSRSTPSQEALIARSSYNVAEENEVSRKTTEGGETSSQGGGESTGSEIDGLFCPICMDAWTNGGEHQVCCLPCGHLYGASCIKRWLQQRKNSGKCPQCNRKCSMKDVRVIYARQIVAVDHQLRKKVPALEAKCASFEKKDNEWQMKEKEWQRKEAYLHTQVHQLTERTYYLEQLLEETQNRPSRLFNANESSLEQFMPGHNLDLEFRNKGPSGKFVLQEELQVDGAKFFDVDASSQCFIVARRLFGMGGMHVLTKVSLIAPHERENIQLPVNTKAARDIRIAPNGRLVLLASLGKKLSVMSMESNNTVLSYDLPAAAWSCSWDLSSSHYVYTGLQNGKLLVFDMRQTLRPLESFDGLTCNPIHTVHSLLPDLTLPSGVRSLLTASSVGLCHWNFGGNEERPSLVPESENQGVCIALAYCPSSNHIVASFRPKIEIACDMAVSQPSLTPATSLMGQGVQGSHILYKNVGNRCYQKLGSTSANVNDIRLAKSAIIDRQNHDV-LFASSNEATCELFLQELPSFMVVQRLKSQKHPVRDVKYTHDLCSGLLSCLSEDKLQLF 627
BLAST of XM_017382213.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7TIS4 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 597.816 bits (1540), Expect = 0.000e+0
Identity = 299/518 (57.72%), Postives = 386/518 (74.52%), Query Frame = 0
Match: D7TIS4 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 597.816 bits (1540), Expect = 0.000e+0
Identity = 299/518 (57.72%), Postives = 386/518 (74.52%), Query Frame = 0
Query: 85 NNEIDGLCCPICMEPWTSEGVHQVCCLPCGHIYGLSCIQKWIRQ-RQSSRKCPQCKRSCSLKDVRLLYASRIVVVDEELQKKVQKLEAKCASLDTKHAECVKREDEGKKREAELYLQVQQLKERARYLEGML-EHSERTAGSVTA-SSDFPRSSCTGQFRKTGCSNSFELQKEFNIEGARVFDVDASGQVLLIARRLTGMGGLFGLTKISLVAPHDRLDMQLPSNTKAVRDLRFSP-RDRLLLVASLGKKLSIISSQSNTTVLTYDLPAAAWSCSWDISCSNYAYAGLQNGMLLVFDMRQTREPVKCLAGITCNPIHSLYSVSPESPSPSGVRTILTASSIGACEWNFGGVDERPFLIPGSDNEGVCVSLACSSSNSNIVASYRPKVNMLNKESASQAVPTPSTNAMGNSVVGSHVSYKRTSSQCFQKLGSTCANVNDIRLPKSAIVDIRNNDAPLFVSGDEARGEITLQLLPSLLTVQHLTPQKFPVRDVKFTHGSNSSILGCLCDDILKLYSLKLS 598
++IDGLCCPICME WTS G HQVCCLPCGHIYG+SCI+KW +Q +SS KCPQCKR C+L++VR LYASR+V VDE+L+KK++ LEAKCASL+ K+A+ +E + KREA+L+LQVQQL ER YLE + E R +G V A +F + F + G S +F LQKE ++GAR FD+DASG++L+IARRL+G GG LTK+SL++PH+ D+ LPS TKAV+DLR SP + RL L+ASLGKKLS++S +SN +LTYDLP AAWSCSWD++ S+Y YAGLQNGML+VFDMRQT P+ ++G T NPIH++ SV S PSGV T+L+ASS+G C+WNFGG +ERPFL+P + N GVC+SLA S+ NIV+++RPKV M N+ + SQ TPS MG + GSHV KR C+QKLGS+CANVNDIRL +SAI+D++++ PLFVSGDE E+ LQ LPSL Q L QK P+RDVK++H + S+L CL +D L+ +S K S
Sbjct: 101 QDQIDGLCCPICMEAWTSGGEHQVCCLPCGHIYGISCIKKWFQQCGRSSGKCPQCKRKCTLRNVRTLYASRVVAVDEDLRKKIRSLEAKCASLEKKNADWCMKESDWHKREADLHLQVQQLIERTTYLERLSSEMHGRGSGLVAARGHNFAEN-----FGRRGSSCNFVLQKELQVDGARYFDIDASGEILVIARRLSGTGGTHVLTKMSLISPHEIEDILLPSGTKAVKDLRVSPAKCRLALLASLGKKLSVLSMESNNVILTYDLPTAAWSCSWDLNSSHYMYAGLQNGMLMVFDMRQTARPMAEISGPTSNPIHTIQSVLHNSTLPSGVSTLLSASSVGLCQWNFGGSEERPFLVPETKNHGVCISLAHCPSSDNIVSTFRPKVEMSNEIAVSQYSLTPSV--MGQGMQGSHVLLKRVGGNCYQKLGSSCANVNDIRLQRSAIIDLQSHH-PLFVSGDEITHELVLQELPSLRVSQRLKSQKHPLRDVKYSHDLSPSLLCCLSEDTLQFFSAKFS 610
BLAST of XM_017382213.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZNB6 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 592.038 bits (1525), Expect = 0.000e+0
Identity = 309/591 (52.28%), Postives = 403/591 (68.19%), Query Frame = 0
Match: A0A5J4ZNB6 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 592.038 bits (1525), Expect = 0.000e+0
Identity = 309/591 (52.28%), Postives = 403/591 (68.19%), Query Frame = 0
Query: 44 DDDDDEEDDEAVSTAAIVKNKTTPLSIDDDGSGIEEL---------------MSKDNN----------------EIDGLCCPICMEPWTSEGVHQVCCLPCGHIYGLSCIQKWIRQRQSSRKCPQCKRSCSLKDVRLLYASRIVVVDEELQKKVQKLEAKCASLDTKHAECVKREDEGKKREAELYLQVQQLKERARYLEGML-EHSERTAGSVTASSDFPRSSCTG-----QFRKTGCSNSFELQKEFNIEGARVFDVDASGQVLLIARRLTGMGGLFGLTKISLVAPHDRLDMQLPSNTKAVRDLRFSPRDRLLLVASLGKKLSIISSQSNTTVLTYDLPAAAWSCSWDISCSNYAYAGLQNGMLLVFDMRQTREPVKCLAGITCNPIHSLYSVSPESPSPSGVRTILTASSIGACEWNFGGVDERPFLIPGSDNEGVCVSLACSSSNSNIVASYRPKVNMLNKESASQAVPTPSTNAMGNSVVGSHVSYKRTSSQCFQKLGSTCANVNDIRLPKSAIVDIRNNDAPLFVSGDEARGEITLQLLPSLLTVQHLTPQKFPVRDVKFTHGSNSSILGCLCDDILKLYSLKL 597
D+D+D + A+ T ++ T+ G+E + MS NN +IDGL CPICME WT+ G HQ+CCLPCGH+YGLSCI++W++Q +SS KCPQC R CSLKDVR++YAS+IVVVD+E QKKV+ LEAKCASL+ K A K+ E +KREA L+ Q+ QL ER YLE +L + R G + + + G +F + G S F LQK+ ++GARVFDVDAS Q+L+IARRL GMGG+ LTK+SL+APH+ ++QLP +TKAV+DLR SP RL L+A LGKKLS++S++SN +L+YDLPAAAWSCSWD++ S+Y YAGLQNGMLLVFDMRQT PV+ L G+T N IH+++S+SP+ SGVRT+LTASS+G CEWNFGG++ERPFL+PGS+N+GVC+SLAC +++IVAS+RPKV + S SQ PS MG V GSHV YKR S+ +QKLGST ANVNDIRLPK + + R N PLF GDE E+ LQ LPSL+ +Q L + P+ DVK+TH ++ +L CL +D L+L+S L
Sbjct: 51 DEDEDFLPEIALPTVSVTGPSTSSQEAVTS-RGLENVVEENEDSKRTADGGEMSSSNNKVESGENSSAEELNRSQIDGLFCPICMEAWTNAGDHQICCLPCGHLYGLSCIKRWLQQHRSSAKCPQCNRKCSLKDVRVIYASQIVVVDQESQKKVKTLEAKCASLEKKDAVWCKKAIEWQKREANLHQQIDQLMERTSYLEHLLGDMQNRPTGILIGNGACQEHAILGHNLDSEFGRHGFSGGFVLQKDLLVDGARVFDVDASSQILIIARRLAGMGGMHVLTKMSLIAPHETENIQLPVSTKAVKDLRVSPHGRLTLLAFLGKKLSVLSTESNNIILSYDLPAAAWSCSWDLNSSHYLYAGLQNGMLLVFDMRQTTRPVESLIGLTGNLIHTIHSLSPDLTVRSGVRTLLTASSVGLCEWNFGGIEERPFLVPGSENQGVCISLACCRYSNDIVASFRPKVEFSSDISISQ----PSL-TMGQGVQGSHVLYKRLGSRGYQKLGSTYANVNDIRLPKKSTIVARENQDPLFAFGDEITCELVLQELPSLMDLQRLRSRMHPIHDVKYTHTLSTGLLSCLSEDTLQLFSANL 635
BLAST of XM_017382213.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834H443 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7147892.1}))
HSP 1 Score: 582.408 bits (1500), Expect = 0.000e+0
Identity = 301/569 (52.90%), Postives = 396/569 (69.60%), Query Frame = 0
Match: A0A834H443 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7147892.1}))
HSP 1 Score: 582.408 bits (1500), Expect = 0.000e+0
Identity = 301/569 (52.90%), Postives = 396/569 (69.60%), Query Frame = 0
Query: 51 DDEAVSTAAIVKNKTTPLSIDDDGSGIEELMSKDNNEIDGLCCPICMEPWTSEGVHQVCCLPCGHIYGLSCIQKWIRQRQSSRKCPQCKRSCSLKDVRLLYASRIVVVDEELQKKVQKLEAKCASLDTKHAECVKREDEGKKREAELYLQVQQLKE-----------------RARYLEGMLEHSE-RTAGSVTASSDFPRSSCTG-----QFRKTGCSNSFELQKEFNIEGARVFDVDASGQVLLIARRLTGMGGLFGLTKISLVAPHDRLDMQLPSNTKAVRDLRFSPRDRLLLVASLGKKLSIISSQSNTTVLTYDLPAAAWSCSWDISCSNYAYAGLQNGMLLVFDMRQTREPVKCLAGITCNPIHSLYSVSPESPSPSGVRTILTASSIGACEWNFGGVDERPFLIPGSDNEGVCVSLACSSSNSNIVASYRPKVNMLNKESASQAVPTPSTNAMGNSVVGSHVSYKRTSSQCFQKLGSTCANVNDIRLPKSAIVDIRNNDAPLFVSGDEARGEITLQLLPSLLTVQHLTPQKFPVRDVKFTHGSNSSILGCLCDDILKLYSLK 596
+D VS TT S+ D SG E +EIDGL CPICME WTS G HQVCCLPCGH+YG SCI++W++QR++S KCPQC R +LKDVR++YA +IV +D+E+Q KV+ LEAKCASL+ K+ + KRE E +KRE L LQV QL+E R YLE +L ++ R G + A + G ++ G S++F LQKE ++GA++FDVDAS Q+ +IA+RL+GMGG+ L K+SL+APH R ++ LP NTKAVRDLR +P RL L+ASLGKKLSIIS +SN TVL+YDLPAAAWSCSWD++ S+Y Y GLQNGMLLVFDMRQT +PV+ + G+T NPIH+++S+ P+S PSGVR++LTASS G C+WNFG ++ER FLIPGS+N+GVC++LA S+++IVAS+RPK+ M N SQ +P T+ G V G+HV YK + C+QKLGSTCA+VND+RLP+SAI+ +N F S +E E+ LQ LPS + VQHL Q P+RDVK+TH +S +L CL +D L+L+S K
Sbjct: 83 EDSEVSQRTRGGGDTTTSSLSQDSSGREW----SRSEIDGLFCPICMEAWTSGGDHQVCCLPCGHLYGASCIKRWLQQRKNSGKCPQCNRKSTLKDVRVIYAQQIVAIDQEIQTKVRSLEAKCASLEEKNNDWQKRECEWRKREVALDLQVHQLREASSILFIGLPFQMSCISRKSYLERLLGDAQNRPLGLLNAHEGCTEQAMFGRNLDLKYCGQGSSSNFILQKELQVDGAKLFDVDASSQIGIIAQRLSGMGGMHVLAKMSLIAPHGRENIALPVNTKAVRDLRVAPHGRLALLASLGKKLSIISMESNNTVLSYDLPAAAWSCSWDLNSSHYVYTGLQNGMLLVFDMRQTLKPVESVVGLTSNPIHTMHSLLPDSTLPSGVRSLLTASSGGLCQWNFGAIEERTFLIPGSENQGVCIALAYCPSSNHIVASFRPKIEMSNDTVVSQPSLSPVTSLRGKGVWGTHVLYKALGNSCYQKLGSTCASVNDVRLPRSAIIYNQNLQ---FASTNEVTCEVVLQELPSFMVVQHLKSQMHPIRDVKYTHDLSSGLLSCLSEDRLQLFSRK 644
BLAST of XM_017382213.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9UA71 ((E3 ubiquitin-protein ligase RFWD3 isoform X2 {ECO:0000313|RefSeq:XP_011094596.1}))
HSP 1 Score: 582.022 bits (1499), Expect = 0.000e+0
Identity = 293/518 (56.56%), Postives = 379/518 (73.17%), Query Frame = 0
Match: A0A6I9UA71 ((E3 ubiquitin-protein ligase RFWD3 isoform X2 {ECO:0000313|RefSeq:XP_011094596.1}))
HSP 1 Score: 582.022 bits (1499), Expect = 0.000e+0
Identity = 293/518 (56.56%), Postives = 379/518 (73.17%), Query Frame = 0
Query: 87 EIDGLCCPICMEPWTSEGVHQVCCLPCGHIYGLSCIQKWIRQRQSSRKCPQCKRSCSLKDVRLLYASRIVVVDEELQKKVQKLEAKCASLDTKHAECVKREDEGKKREAELYLQVQQLKERARYLEGMLEHSERTAGSVTASSDFPRSS------CTGQFRKTGCSNSFELQKEFNIEGARVFDVDASGQVLLIARRLTGMGGLFGLTKISLVAPHDRLDMQLPSNTKAVRDLRFSPRDRLLLVASLGKKLSIISSQSNTTVLTYDLPAAAWSCSWDISCSNYAYAGLQNGMLLVFDMRQTREPVKCLAGITCNPIHSLYSVSPESPSPSGVRTILTASSIGACEWNFGGVDERPFLIPGSDNEGVCVSLACSSSNSNIVASYRPKVNMLNKESASQAVPTPSTNAMGNSVVGSHVSYKRTSSQCFQKLGSTCANVNDIRLPKSAIVD--IRNNDAPLFVSGDEARGEITLQLLPSLLTVQHLTPQKFPVRDVKFTHGSNSSILGCLCDDILKLYSLK 596
+IDGL C IC E W+S G H VCCLPCGHIYGL+CI+KW+R RQ S KCPQCK+ C +KD+RLLYASRIV +D ELQKKVQ LEAKC+SL+ K AE K+E E KKREA L QVQ L++R L +LE +ERTA ++AS R QF GCSN F +QK+F ++GAR+FD+D+SGQ+ +IARRL+GMGG LTK+SL++ +D+ D+ LP NTKAV+DL+ SP RL+L+ASLGKKLS++S++SN VLTY+LPAAAWSCSWDIS S+YAYAGLQNG +L FDMR T V+ +G+TCNPIH+LYS+ P+S SGVR++L+ASS+G C+WNFGG ++RP+LIP SD GVC+SLA S+ +IVASYRPK+ + S P+ A G GSHV Y++ ++KLG+TCANV+DIRLPKS I+D RN P+F S DE E+ LQ LPSL+ V+HL P+K+P+RDVK+ +S +L CL +D L+L++ K
Sbjct: 131 DIDGLFCSICFEAWSSGGDHHVCCLPCGHIYGLACIKKWLR-RQGSSKCPQCKKKCGIKDIRLLYASRIVAIDGELQKKVQSLEAKCSSLEKKKAEWSKKEVEWKKREASLRRQVQDLEQRNHDLADLLEDTERTASGLSASGCNSRGESILGFDANAQFNMRGCSNKFIMQKDFQVDGARLFDIDSSGQIFVIARRLSGMGGAHVLTKVSLLSNNDKEDIWLPENTKAVKDLQISPHARLVLLASLGKKLSVLSTESNNAVLTYELPAAAWSCSWDISSSHYAYAGLQNGTVLQFDMRYTMRHVQSFSGLTCNPIHTLYSLLPKSSLSSGVRSVLSASSLGLCQWNFGGSEDRPYLIPESDEHGVCISLAFCKSSDDIVASYRPKIEI----SGDLDFCQPTLTAPGQRTRGSHVLYRKMGCT-YKKLGATCANVSDIRLPKSTIIDGVYRN---PVFASSDELTSELVLQELPSLMVVEHLKPKKYPIRDVKYHRQLSSGLLSCLTEDSLQLFTAK 639
BLAST of XM_017382213.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HPI1 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 579.326 bits (1492), Expect = 0.000e+0
Identity = 287/517 (55.51%), Postives = 381/517 (73.69%), Query Frame = 0
Match: A0A7J7HPI1 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 579.326 bits (1492), Expect = 0.000e+0
Identity = 287/517 (55.51%), Postives = 381/517 (73.69%), Query Frame = 0
Query: 86 NEIDGLCCPICMEPWTSEGVHQVCCLPCGHIYGLSCIQKWIRQRQSSRKCPQCKRSCSLKDVRLLYASRIVVVDEELQKKVQKLEAKCASLDTKHAECVKREDEGKKREAELYLQVQQLKERARYLEGMLEHSE-RTAGSVTASSDFPRSSCTGQ-----FRKTGCSNSFELQKEFNIEGARVFDVDASGQVLLIARRLTGMGGLFGLTKISLVAPHDRLDMQLPSNTKAVRDLRFSPRDRLLLVASLGKKLSIISSQSNTTVLTYDLPAAAWSCSWDISCSNYAYAGLQNGMLLVFDMRQTREPVKCLAGITCNPIHSLYSVSPESPSPSGVRTILTASSIGACEWNFGGVDERPFLIPGSDNEGVCVSLACSSSNSNIVASYRPKVNMLNKESASQAVPTPSTNAMGNSVVGSHVSYKRTSSQCFQKLGSTCANVNDIRLPKSAIVDIRNNDAPLFVSGDEARGEITLQLLPSLLTVQHLTPQKFPVRDVKFTHGSNSSILGCLCDDILKLYSLK 596
+EIDGL CPICME W++ G HQVCCLPCGH+YG SCI+KW++QR++S KCPQC R C+LKDVR++YAS+IVV+D +LQKKVQ LEAKC S + K + +E + ++RE +L+LQ R YLE +L ++ R +G + S + G F G S++F LQ ++GA+ FDVDAS Q+ +IARRL GMGG+ LTK+SL+APH+R ++ LP +TKAVRDLR +P+ RL L+ASLGKKLS+IS++SN V++YDLPAAAWSCSWD++ S+Y Y+GLQNGMLLVFDMRQT +P++ L G+TCNPIH+++S+SP+S PSG R++LTASSIG C+WNFGGV+E PFL+P S+N+GVC+ LA SN++IVAS+RPKV M N + SQ T +++ MG + GS++ +K ++ FQKLGST VNDIRLPKS IVD R N P F G E E+ LQ LPS + VQ L QK P+RDVK+TH +S +L CL +DIL+L+S K
Sbjct: 126 SEIDGLFCPICMEAWSNGGDHQVCCLPCGHLYGASCIKKWLQQRKNSGKCPQCNRKCTLKDVRVIYASQIVVIDHQLQKKVQSLEAKCTSFEKKDEDWHNKEVKWRRREVDLHLQ------RTSYLERLLGDAQNRPSGLFSGSQGSQEQAMLGHDLDFGFGGQGSSSNFVLQ----VDGAKFFDVDASSQIFIIARRLAGMGGMHVLTKMSLIAPHERENIDLPVSTKAVRDLRVAPQGRLALLASLGKKLSVISTESNNVVISYDLPAAAWSCSWDLNSSHYIYSGLQNGMLLVFDMRQTLKPMESLTGLTCNPIHTVHSLSPDSTLPSGARSLLTASSIGLCQWNFGGVEEGPFLVPESENQGVCIGLAYCPSNNHIVASFRPKVEMSNDMAVSQPSLTAASSLMGQGIQGSNILFKSLGNRRFQKLGSTYMTVNDIRLPKSVIVD-RQNHNPQFAYGSEVACELVLQELPSFMDVQRLKSQKHPIRDVKYTHDLSSGLLSCLSEDILQLFSSK 631
BLAST of XM_017382213.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9U5W2 ((E3 ubiquitin-protein ligase RFWD3 isoform X1 {ECO:0000313|RefSeq:XP_011094594.1}))
HSP 1 Score: 577.785 bits (1488), Expect = 0.000e+0
Identity = 293/519 (56.45%), Postives = 379/519 (73.03%), Query Frame = 0
Match: A0A6I9U5W2 ((E3 ubiquitin-protein ligase RFWD3 isoform X1 {ECO:0000313|RefSeq:XP_011094594.1}))
HSP 1 Score: 577.785 bits (1488), Expect = 0.000e+0
Identity = 293/519 (56.45%), Postives = 379/519 (73.03%), Query Frame = 0
Query: 87 EIDGLCCPICMEPWTSEGVHQVCCLPCGHIYGLSCIQKWIRQRQSSRKCPQCKRSCSLKDVRLLYASRIVVVDEELQKKVQKLEAKCASLDTKH-AECVKREDEGKKREAELYLQVQQLKERARYLEGMLEHSERTAGSVTASSDFPRSS------CTGQFRKTGCSNSFELQKEFNIEGARVFDVDASGQVLLIARRLTGMGGLFGLTKISLVAPHDRLDMQLPSNTKAVRDLRFSPRDRLLLVASLGKKLSIISSQSNTTVLTYDLPAAAWSCSWDISCSNYAYAGLQNGMLLVFDMRQTREPVKCLAGITCNPIHSLYSVSPESPSPSGVRTILTASSIGACEWNFGGVDERPFLIPGSDNEGVCVSLACSSSNSNIVASYRPKVNMLNKESASQAVPTPSTNAMGNSVVGSHVSYKRTSSQCFQKLGSTCANVNDIRLPKSAIVD--IRNNDAPLFVSGDEARGEITLQLLPSLLTVQHLTPQKFPVRDVKFTHGSNSSILGCLCDDILKLYSLK 596
+IDGL C IC E W+S G H VCCLPCGHIYGL+CI+KW+R RQ S KCPQCK+ C +KD+RLLYASRIV +D ELQKKVQ LEAKC+SL+ K AE K+E E KKREA L QVQ L++R L +LE +ERTA ++AS R QF GCSN F +QK+F ++GAR+FD+D+SGQ+ +IARRL+GMGG LTK+SL++ +D+ D+ LP NTKAV+DL+ SP RL+L+ASLGKKLS++S++SN VLTY+LPAAAWSCSWDIS S+YAYAGLQNG +L FDMR T V+ +G+TCNPIH+LYS+ P+S SGVR++L+ASS+G C+WNFGG ++RP+LIP SD GVC+SLA S+ +IVASYRPK+ + S P+ A G GSHV Y++ ++KLG+TCANV+DIRLPKS I+D RN P+F S DE E+ LQ LPSL+ V+HL P+K+P+RDVK+ +S +L CL +D L+L++ K
Sbjct: 131 DIDGLFCSICFEAWSSGGDHHVCCLPCGHIYGLACIKKWLR-RQGSSKCPQCKKKCGIKDIRLLYASRIVAIDGELQKKVQSLEAKCSSLEKKQKAEWSKKEVEWKKREASLRRQVQDLEQRNHDLADLLEDTERTASGLSASGCNSRGESILGFDANAQFNMRGCSNKFIMQKDFQVDGARLFDIDSSGQIFVIARRLSGMGGAHVLTKVSLLSNNDKEDIWLPENTKAVKDLQISPHARLVLLASLGKKLSVLSTESNNAVLTYELPAAAWSCSWDISSSHYAYAGLQNGTVLQFDMRYTMRHVQSFSGLTCNPIHTLYSLLPKSSLSSGVRSVLSASSLGLCQWNFGGSEDRPYLIPESDEHGVCISLAFCKSSDDIVASYRPKIEI----SGDLDFCQPTLTAPGQRTRGSHVLYRKMGCT-YKKLGATCANVSDIRLPKSTIIDGVYRN---PVFASSDELTSELVLQELPSLMVVEHLKPKKYPIRDVKYHRQLSSGLLSCLTEDSLQLFTAK 640
BLAST of XM_017382213.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9GYL5 ((RING-finger-containing E3 ubiquitin ligase {ECO:0000313|EMBL:PIN10305.1}))
HSP 1 Score: 572.778 bits (1475), Expect = 0.000e+0
Identity = 298/580 (51.38%), Postives = 398/580 (68.62%), Query Frame = 0
Match: A0A2G9GYL5 ((RING-finger-containing E3 ubiquitin ligase {ECO:0000313|EMBL:PIN10305.1}))
HSP 1 Score: 572.778 bits (1475), Expect = 0.000e+0
Identity = 298/580 (51.38%), Postives = 398/580 (68.62%), Query Frame = 0
Query: 24 DVMDLDEEEDDDDEYEDDEDDDDDDEEDDEAVSTAAIVKNKTTPLSIDDDGSGIEELMSKDNNEIDGLCCPICMEPWTSEGVHQVCCLPCGHIYGLSCIQKWIRQRQSSRKCPQCKRSCSLKDVRLLYASRIVVVDEELQKKVQKLEAKCASLDTKHAECVKREDEGKKREAELYLQVQQLKERARYLEGMLEHSER-TAGSVTASSDFPRSSCTG-----QFRKTGCSNSFELQKEFNIEGARVFDVDASGQVLLIARRLTGMGGLFGLTKISLVAPHDRLDMQLPSNTKAVRDLRFSPRDRLLLVASLGKKLSIISSQSNTTVLTYDLPAAAWSCSWDISCSNYAYAGLQNGMLLVFDMRQTREPVKCLAGITCNPIHSLYSVSPESPSPSGVRTILTASSIGACEWNFGGVDERPFLIPGSDNEGVCVSLACSSSNSNIVASYRPKVNMLNKESASQAVPTPSTNAMGNSVVGSHVSYKRTSSQCFQKLGSTCANVNDIRLPKSAIVDIRNNDAPLFVSGDEARGEITLQLLPSLLTVQHLTPQKFPVRDVKFTHGSNSSILGCLCDDILKLYSLKL 597
DV+ L E + + D+ DDD K L D+DG E + EIDGL CPIC E W+S G H VCCLPCGHIYGLSCI+KW+R+R SS KCPQCK+ C LKD+R LYAS+IV VD ELQK +Q LEAKCASL+ K A+ +E E KKREA+L+ QVQ LKER LE +LE ER +GS +S ++ +G +F GCSN F +QK+F ++GAR+FD+D S Q+ ++ARRL+GMGG LTK+SL+ +++ D+ LP NT+AV+DL+ SP RL+L+ASLGKKLS++S++SN T+LTY+LPAAAWSCSWDIS S+Y YAGLQNG +L FDMR T V+ L G+TCNPIH+L+S+SP + S +G+R++L+ASS G C+W+FG ++RPFL+P S+ GVC+SLA S +IVA+YRPKV M SQ+ + +A G GSHV YK+ + KLG+T ANV+DIRLPKSAI+ + + P+F SGDE E+ LQ LPSL+ + HL P+ +P+RDVK+ + ++ +L CL DD L+L++ KL
Sbjct: 105 DVVALAGERESCSQRSDNGDDD----------------KGGAASLKGDNDG---ENDGGFNRGEIDGLFCPICFEAWSSGGDHHVCCLPCGHIYGLSCIKKWLRRRGSS-KCPQCKKKCGLKDIRPLYASQIVAVDGELQKTLQSLEAKCASLEKKSADWSNKEVEWKKREADLHKQVQHLKERTHDLEDLLEDMERRMSGSCASSWNYQGEPTSGVGANSKFHMQGCSNKFIMQKDFQVDGARLFDIDPSSQIFVVARRLSGMGGAHVLTKVSLLFNYEKEDILLPENTRAVKDLQVSPHARLVLLASLGKKLSVLSTESNNTILTYNLPAAAWSCSWDISSSHYVYAGLQNGTVLQFDMRYTLSHVESLTGLTCNPIHTLHSLSP-NLSSNGIRSVLSASSPGLCQWDFGVSEQRPFLVPESEKHGVCISLAYCKSTEDIVATYRPKVEMSRDLEISQS----TLSAAGQGTRGSHVLYKKLDCT-YPKLGATYANVSDIRLPKSAIIHGMHQN-PVFASGDELTCELVLQELPSLMVLDHLKPKNYPIRDVKYVNHLSTGLLSCLSDDSLQLFTTKL 657
BLAST of XM_017382213.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4GFH5 ((E3 ubiquitin-protein ligase RFWD3 {ECO:0000313|RefSeq:XP_018842654.2}))
HSP 1 Score: 567.385 bits (1461), Expect = 0.000e+0
Identity = 294/529 (55.58%), Postives = 377/529 (71.27%), Query Frame = 0
Match: A0A2I4GFH5 ((E3 ubiquitin-protein ligase RFWD3 {ECO:0000313|RefSeq:XP_018842654.2}))
HSP 1 Score: 567.385 bits (1461), Expect = 0.000e+0
Identity = 294/529 (55.58%), Postives = 377/529 (71.27%), Query Frame = 0
Query: 82 SKDN----NEIDGLCCPICMEPWTSEGVHQVCCLPCGHIYGLSCIQKWIRQRQSSRKCPQCKRSCSLKDVRLLYASRIVVVDEELQKKVQKLEAKCASLDTKHAECVKREDEGKKREAELYLQVQQLKERARYLEGMLEHSE-RTAGSVTASSDFPRSSCTGQ-FRKTGC----SNSFELQKEFNIEGARVFDVDASGQVLLIARRLTGMGGLFGLTKISLVAPHDRLDMQLPSNTKAVRDLRFSPRD-RLLLVASLGKKLSIISSQSNTTVLTYDLPAAAWSCSWDISCSNYAYAGLQNGMLLVFDMRQTREPVKCLAGITCNPIHSLYSVSPESPSPSGVRTILTASSIGACEWNFGGVDERPFLIPGSDNEGVCVSLACSSSNSNIVASYRPKVNMLNKESASQAVPTPSTNAMGNSVVGSHVSYKRTSSQCFQKLGSTCANVNDIRLPK-SAIVDIRNNDAPLFVSGDEARGEITLQLLPSLLTVQHLTPQKFPVRDVKFTHGSNSSILGCLCDDILKLYSLKLS 598
S+DN +EIDGL CPICME WT +G H +CCLPCGHIYG+SCI KW++QR++S KCPQC R C+LKDV L+ASR+V VDEE QK+++ LEA+CASL+ K A+ K+E E KKREAEL+++V QL E YLE +L+ + R +G V A+ + S GQ F C S+SF LQKEF ++GAR+ DVDAS Q+LLI RR + MG LTK+SL+ PH++ D+ LPSN K ++DL SP + L+L ASLG+KLS++S +SN +L YDLPAAAWSCSWD+ SNY YAGLQNG LLVFD+RQT PV L G+TCNP+H+++S+ S GVR++L+ASSIG C WNFGG +E PFL+P +DN+GVC+SLA S S+ +IVASYRPKV M N + +Q TPS +G V GSH+ Y R S CFQKLGS ANVNDIRLPK SAI+D+ + + LF SGDE E+ LQ LPS QHL QK + DVK+TH +L CL +D L+++ +KLS
Sbjct: 100 SQDNEWSRSEIDGLFCPICMEAWTVDGGHHICCLPCGHIYGMSCINKWLKQRKNSGKCPQCNRKCTLKDVTKLFASRVVAVDEESQKRIRSLEARCASLEKKGADWCKKEAEWKKREAELHVKVCQLSEGKIYLEKLLKDMQSRPSGVVKAAGNCQGRSVFGQNFGSALCGQESSSSFILQKEFWLDGARLIDVDASSQILLIVRRRSEMGATSVLTKMSLMPPHEKEDIFLPSNMKVIKDLCISPSNGSLVLFASLGQKLSVLSLESNNIILAYDLPAAAWSCSWDLQNSNYIYAGLQNGSLLVFDVRQTVRPVNSLKGLTCNPVHTIHSLLHSSTLLPGVRSVLSASSIGLCHWNFGGAEEGPFLVPQTDNQGVCISLAYSPSSDDIVASYRPKVEMSNM-AFTQPALTPS-QVIGQGVQGSHIFYNRVGSNCFQKLGSASANVNDIRLPKRSAIIDVESQNR-LFASGDEVTCELILQELPSFAAFQHLKIQKQHICDVKYTHALGQGLLSCLEEDRLQIFCMKLS 625
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7B2T7 | E-Value: 0.000e+0, PID: 53.05 | (Putative E3 ubiquitin-protein ligase RFWD3 {ECO:0... [more] |
| A0A2R6RS83 | E-Value: 0.000e+0, PID: 50.60 | (E3 ubiquitin-protein like {ECO:0000313|EMBL:PSS32... [more] |
| D7TIS4 | E-Value: 0.000e+0, PID: 57.72 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| A0A5J4ZNB6 | E-Value: 0.000e+0, PID: 52.28 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| A0A834H443 | E-Value: 0.000e+0, PID: 52.90 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7147... [more] |
| A0A6I9UA71 | E-Value: 0.000e+0, PID: 56.56 | (E3 ubiquitin-protein ligase RFWD3 isoform X2 {ECO... [more] |
| A0A7J7HPI1 | E-Value: 0.000e+0, PID: 55.51 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| A0A6I9U5W2 | E-Value: 0.000e+0, PID: 56.45 | (E3 ubiquitin-protein ligase RFWD3 isoform X1 {ECO... [more] |
| A0A2G9GYL5 | E-Value: 0.000e+0, PID: 51.38 | (RING-finger-containing E3 ubiquitin ligase {ECO:0... [more] |
| A0A2I4GFH5 | E-Value: 0.000e+0, PID: 55.58 | (E3 ubiquitin-protein ligase RFWD3 {ECO:0000313|Re... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |