XM_017387768.1

Resource Type: 
Polypeptide
Name: 
XM_017387768.1
Identifier: 
XM_017387768.1-protein
Sequence: 
MGGLCTGGTIKHHRQSQGKADHDYSSDNNSKNIDKKTSDGLEEEESYDGG
MNGSAGFEFYEKKRTPHIFDSGELNFNISNQFLNRRSAAARTPPATKGPH
MNSFFGKAGIAGLERAVDVLDTLGSSMTNMHAGSGFAYNLASRGNKVSIL
AFEVANTIAKGSNLLQSISEENIQILKDEILQSDGVLRLVSTDMTELLKI
AAIDQREELNIFSREVIRFGDLCRDPQWHNLDRYFLKFDSDPAAGKLLRE
QAEMTMQELLSLAQYTSELYHEMHALDRFEQDYQTKVEEVESLHLPRKGE
GLLLLHSELKHQRKLVKSLKKKSLWSKSLVEVVEKLVDVVTYIHQHISEV
FGNDGASSTEEKSSGKPDERLGIAGLALHYAHIVTQIDNIASRPTSLPPN
MRDGLYSGLPVNVKKRLRSRLQSLDVHEELSIPQMKTQIERTLKWLAPIA
ADTTKAHQGFGWVGEWANTGIEYGKTTKNSVIRLQTLYHADKGKMDLYIL
ELIICLHRLISLVKHKDNGSKAQPLQSPVERELVPDHEIPSEVQNTITLE
DGNVIDNSMNRQKLFGKSKSLEFVMGRRKSLKIRAPSRSAGSSPRTATAL
ERRQSKASILDVLDGIEQHSELS
Sequence Length: 
623
Sequence Checksum: 
242f876e63c41acadf54427bf86b25c4
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017387768.1, derives from mRNA, XM_017387768.1.
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Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017387768.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017387768.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TKD5 ((uncharacterized protein LOC105166052 isoform X1 {ECO:0000313|RefSeq:XP_011083570.1, ECO:0000313|RefSeq:XP_011083571.1}))

HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0
Identity = 373/626 (59.58%), Postives = 476/626 (76.04%), Query Frame = 0
 
Query:    1 MGGLCTGGTIKHHRQSQGKADHDYSSDNNSKNIDKKTSDGLEEEESYDGGMNGSAGFEFYEKKRTPHIFDSGELNFNISNQFLNRRSAAARTPPATKGPHMNSFFGKAGIAGLERAVDVLDTLGSSMTNMHAGSGFAYNLASRGNKVSILAFEVANTIAKGSNLLQSISEENIQILKDEILQSDGVLRLVSTDMTELLKIAAIDQREELNIFSREVIRFGDLCRDPQWHNLDRYFLKFDSDPAAGKLLREQAEMTMQELLSLAQYTSELYHEMHALDRFEQDYQTKVEEVESLHLPRKGEGLLLLHSELKHQRKLVKSLKKKSLWSKSLVEVVEKLVDVVTYIHQHISEVFGNDGASSTEEKSSGKPDERLGIAGLALHYAHIVTQIDNIASRPTSLPPNMRDGLYSGLPVNVKKRLRSRLQSLDVHEELSIPQMKTQIERTLKWLAPIAADTTKAHQGFGWVGEWANTGIEYGKTT--KNSVIRLQTLYHADKGKMDLYILELIICLHRLISLVKHKDNGSKAQPLQSPVERELVPDHEIPSEVQN------TITLEDGNVIDNSMNRQKLF-GKSKSLEFVMGRRKSLKIRAPSRSAGSSPRTATALERRQSKASILDVLDGIE 617
            MGG+C+GGT+K  R+S  + +H+ SS  + K    K+     ++++ D         + +EK    +++DSGELN +IS +   + S  ARTP A K P   SF GKAGI GLE+AV+VLDTLGSSMTN+++G GF   + SRGNK+SILAFEVANTIAKG+NLLQS+SEEN+Q LK EIL S+GV +LVSTDM ELL+IAA D+R+E ++FSREVIRFG+LC+DPQWHNLDR+F K DSDP   K  RE+AEMTMQEL +LAQ+TSELYHE+HALDRFEQDYQ K+EEV+SLHLPRKGE L +L SELKHQRKLV+SLKKKSLWSKSL ++VEKLVD+VT+IHQ IS+VFG++G     + S+ KP ERLG+AGLALHYA+I+TQIDN+ASRPTSLPP+MRD LY+GLP  VK  LRSRLQ+ D  EEL++PQ+K ++E++L+WL P+A DTTKAHQGFGWVGEWANTG E+GK T  +N++IRLQTLYHADK K++ +ILEL+  LHRLISLV+++DNG KAQP +SP  +      E  S   N       ++ ED +++++ M R+K   G SKS EFVM ++K  KI A SRS GSSPR       +  +  +LD+LDG++
Sbjct:    1 MGGVCSGGTVKKSRKSV-EVEHEKSSGFSGK---LKSMGSFGKKKNNDDSYTYHDEIDVFEKGPHNNLYDSGELNLSISREL--KPSTPARTP-ANKAPQTTSFLGKAGIVGLEKAVEVLDTLGSSMTNLNSG-GFTTGVTSRGNKISILAFEVANTIAKGANLLQSLSEENVQFLKKEILNSEGVRQLVSTDMDELLRIAAADKRDEFDVFSREVIRFGNLCKDPQWHNLDRFFSKLDSDPEVNKQPREEAEMTMQELTTLAQHTSELYHELHALDRFEQDYQRKLEEVDSLHLPRKGESLAMLQSELKHQRKLVRSLKKKSLWSKSLEQIVEKLVDIVTFIHQEISDVFGSNGLQPPGKVSANKP-ERLGVAGLALHYANIITQIDNVASRPTSLPPSMRDTLYNGLPPTVKAALRSRLQT-DEKEELTVPQIKAEMEKSLQWLVPVATDTTKAHQGFGWVGEWANTGNEFGKKTSSQNNLIRLQTLYHADKRKVESWILELVTLLHRLISLVRYRDNGLKAQPARSPTNKGSNGISETLSRSNNGRMHGTQLSSEDRDLLEDVMKRRKFVPGLSKSQEFVMAKKKKNKIFALSRSTGSSPRRGM----KHQQGDVLDILDGLD 612    
BLAST of XM_017387768.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6UVU6 ((uncharacterized protein LOC113714931 {ECO:0000313|RefSeq:XP_027094879.1}))

HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0
Identity = 374/630 (59.37%), Postives = 477/630 (75.71%), Query Frame = 0
 
Query:    1 MGGLCTGGTIKH-----HRQSQGKADHDYSSDNNSKNIDKKTSDGLEEEESYDGGMNGSAGFEFYEKKRTPHIFDSGELNFNISNQFLNRRSAAARTPPATKGPHMNSFFGKAGIAGLERAVDVLDTLGSSMTNMHAGSGFAYNLASRGNKVSILAFEVANTIAKGSNLLQSISEENIQILKDEILQSDGVLRLVSTDMTELLKIAAIDQREELNIFSREVIRFGDLCRDPQWHNLDRYFLKFDSDPAAGKLLREQAEMTMQELLSLAQYTSELYHEMHALDRFEQDYQTKVEEVESLHLPRKGEGLLLLHSELKHQRKLVKSLKKKSLWSKSLVEVVEKLVDVVTYIHQHISEVFGNDGASSTEEKSSGKPDERLGIAGLALHYAHIVTQIDNIASRPTSLPPNMRDGLYSGLPVNVKKRLRSRLQSLDVHEELSIPQMKTQIERTLKWLAPIAADTTKAHQGFGWVGEWANT-GIEYGKTTK--NSVIRLQTLYHADKGKMDLYILELIICLHRLISLVKHKDNGSKAQPLQSPVERELVPDHEIPSEVQNT----ITLEDGNVIDNSMNRQKLF-GKSKSLEFVMGRRKSLKIRAPSRSAGSSPRTATALERRQSKASILDVLDGIE 617
            MGG+C+ G  K        + +    HD SS  + K    K+S G +++   D   +    F+ +EK  T +++DSGEL  + S +   + S  ARTP A KGP ++SF GKAGIAGLE+AV+VLDTLGSSM+N++  SGF   +ASRGN+++ILAFEVANTIAKG+NLLQS+SE+NI+ LK EIL S+GV +LVSTDM ELL IAA D+REE ++FSREV+RFGDLC+DPQWHNL R+F K DSDP   KL RE+AEMTMQEL SLAQ+TSELYHE HALDRFEQDY+ K+EEV+SLHLPRKGE L++L SELKHQRKLV++L+KKSLWSK L EVVEKLVDVVT+IHQ IS+ FG++G  ++  + + KP ERLG+AGLALHYA++VTQIDNIASRPTSLPPNMRD LY+GLP ++K  LRSRL   D  EEL++PQ+K ++E+TL+WL P+AADTTKAHQGFGWVGEWAN+ G E+GK T    S+IRLQTLYHADK KMD YILEL+  LHRLISLVK++D G+K  P +SP  + L    E+ +   N     +++ED N+++  M R+K+  G+SKS EFV+ ++ S K+ A SRS GSSPR    +E    KA++LD+LDG++
Sbjct:    1 MGGVCSNGINKRSINKSELEERNHEHHDKSSGFSGKLKSGKSSGG-KQQNKIDDSSHAYPDFDAFEK--TSNLYDSGELQLSFSREL--KPSTPARTPAAAKGPQVSSFLGKAGIAGLEKAVEVLDTLGSSMSNLN-NSGFIGGMASRGNRIAILAFEVANTIAKGANLLQSLSEDNIRFLKKEILHSEGVQQLVSTDMKELLSIAATDKREEFDVFSREVVRFGDLCKDPQWHNLGRFFSKLDSDPVNPKLPREEAEMTMQELTSLAQHTSELYHEFHALDRFEQDYRRKLEEVDSLHLPRKGESLMILQSELKHQRKLVRTLRKKSLWSKPLEEVVEKLVDVVTFIHQEISDAFGDNGLVASGREPT-KP-ERLGVAGLALHYANLVTQIDNIASRPTSLPPNMRDTLYNGLPPSIKTALRSRLPPTDAKEELTVPQIKAEMEKTLQWLVPVAADTTKAHQGFGWVGEWANSAGTEFGKNTNKSTSLIRLQTLYHADKKKMDTYILELVTWLHRLISLVKYRDTGAKVLPSRSPTRKGLNMQGEVLTNNSNVHGAQLSVEDRNLLEEVMKRRKVVPGRSKSQEFVVAKKGSKKVWALSRSTGSSPR----IELGHPKANVLDILDGLD 618    
BLAST of XM_017387768.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6UR33 ((uncharacterized protein LOC113712786 isoform X1 {ECO:0000313|RefSeq:XP_027092157.1}))

HSP 1 Score: 715.687 bits (1846), Expect = 0.000e+0
Identity = 373/630 (59.21%), Postives = 472/630 (74.92%), Query Frame = 0
 
Query:    1 MGGLCTGGTIKH-----HRQSQGKADHDYSSDNNSKNIDKKTSDGLEEEESYDGGMNGSAGFEFYEKKRTPHIFDSGELNFNISNQFLNRRSAAARTPPATKGPHMNSFFGKAGIAGLERAVDVLDTLGSSMTNMHAGSGFAYNLASRGNKVSILAFEVANTIAKGSNLLQSISEENIQILKDEILQSDGVLRLVSTDMTELLKIAAIDQREELNIFSREVIRFGDLCRDPQWHNLDRYFLKFDSDPAAGKLLREQAEMTMQELLSLAQYTSELYHEMHALDRFEQDYQTKVEEVESLHLPRKGEGLLLLHSELKHQRKLVKSLKKKSLWSKSLVEVVEKLVDVVTYIHQHISEVFGNDGASSTEEKSSGKPDERLGIAGLALHYAHIVTQIDNIASRPTSLPPNMRDGLYSGLPVNVKKRLRSRLQSLDVHEELSIPQMKTQIERTLKWLAPIAADTTKAHQGFGWVGEWANT-GIEYGKTTK--NSVIRLQTLYHADKGKMDLYILELIICLHRLISLVKHKDNGSKAQPLQSPVERELVPDHEIPSEVQNT----ITLEDGNVIDNSMNRQKLF-GKSKSLEFVMGRRKSLKIRAPSRSAGSSPRTATALERRQSKASILDVLDGIE 617
            MGG+C+ G  K        + +    HD SS  + K    K+S G +++   D   +    F+ +EK  T +++DSGEL  + S +   + S  ARTP A KGP ++SF GKAGIAGLE+AV+VLDTLGSSM+N++  SGF   +ASRGN+++ILAFEVANTIAKG+NLLQS+SE+NI+ LK EIL S+ V +LVSTDM ELL IAA D+REE ++FSREV+RFGDLC+DPQWHNL R+F K DSDP   KL RE+AEMTMQEL SLAQ+TSELYHE HALDRFEQDY+ K+EEV+SLHLPRKGE L++L SELKHQRKLV++L+KKSLWSK L EVVEKLVDVVT+IHQ IS+ FG++G  ++  + + KP ERLG+AGLALHYA++VTQIDNIASRPTSLPPNMRD LY+GLP ++K  LRSRL   D  EEL++PQ+K ++E+TL WL P+AADTTKAHQGFGWVGEWAN+ G E+GK T    S+IRLQTLYHADK KMD YILEL+  LHRLISLVK++D G K  P +SP  + L    E+ +   N     ++LED N+++  M  +K+  G+SKS EFV  ++ S K+ A SRS GSSPR    +E    KA++LD+LDG++
Sbjct:    1 MGGVCSNGINKRSINKSELEERNHEHHDKSSGFSGKLKSGKSSGG-KQQNKIDDSSHAYPDFDAFEK--TSNLYDSGELQLSFSREL--KPSTPARTPAAAKGPQVSSFLGKAGIAGLEKAVEVLDTLGSSMSNLN-NSGFIGGMASRGNRIAILAFEVANTIAKGANLLQSLSEDNIRFLKKEILHSEAVQQLVSTDMKELLSIAATDKREEFDVFSREVVRFGDLCKDPQWHNLGRFFSKLDSDPVNPKLPREEAEMTMQELTSLAQHTSELYHEFHALDRFEQDYRRKLEEVDSLHLPRKGESLMILQSELKHQRKLVRTLRKKSLWSKPLEEVVEKLVDVVTFIHQEISDAFGDNGLVASGREPT-KP-ERLGVAGLALHYANLVTQIDNIASRPTSLPPNMRDTLYNGLPPSIKTALRSRLPPTDAKEELTVPQIKAEMEKTLHWLVPVAADTTKAHQGFGWVGEWANSAGTEFGKNTNKSTSLIRLQTLYHADKKKMDTYILELVTWLHRLISLVKYRDAGGKVLPSRSPTRKGLNMQGEVLTNNSNVHGAQLSLEDRNLLEEVMKGRKVVPGRSKSQEFVEAKKGSKKVWALSRSTGSSPR----IELGHPKANVLDILDGLD 618    
BLAST of XM_017387768.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068UGQ1 ((Uncharacterized protein {ECO:0000313|EMBL:CDP07389.1}))

HSP 1 Score: 715.687 bits (1846), Expect = 0.000e+0
Identity = 373/630 (59.21%), Postives = 472/630 (74.92%), Query Frame = 0
 
Query:    1 MGGLCTGGTIKH-----HRQSQGKADHDYSSDNNSKNIDKKTSDGLEEEESYDGGMNGSAGFEFYEKKRTPHIFDSGELNFNISNQFLNRRSAAARTPPATKGPHMNSFFGKAGIAGLERAVDVLDTLGSSMTNMHAGSGFAYNLASRGNKVSILAFEVANTIAKGSNLLQSISEENIQILKDEILQSDGVLRLVSTDMTELLKIAAIDQREELNIFSREVIRFGDLCRDPQWHNLDRYFLKFDSDPAAGKLLREQAEMTMQELLSLAQYTSELYHEMHALDRFEQDYQTKVEEVESLHLPRKGEGLLLLHSELKHQRKLVKSLKKKSLWSKSLVEVVEKLVDVVTYIHQHISEVFGNDGASSTEEKSSGKPDERLGIAGLALHYAHIVTQIDNIASRPTSLPPNMRDGLYSGLPVNVKKRLRSRLQSLDVHEELSIPQMKTQIERTLKWLAPIAADTTKAHQGFGWVGEWANT-GIEYGKTTK--NSVIRLQTLYHADKGKMDLYILELIICLHRLISLVKHKDNGSKAQPLQSPVERELVPDHEIPSEVQNT----ITLEDGNVIDNSMNRQKLF-GKSKSLEFVMGRRKSLKIRAPSRSAGSSPRTATALERRQSKASILDVLDGIE 617
            MGG+C+ G  K        + +    HD SS  + K    K+S G +++   D   +    F+ +EK  T +++DSGEL  + S +   + S  ARTP A KGP ++SF GKAGIAGLE+AV+VLDTLGSSM+N++  SGF   +ASRGN+++ILAFEVANTIAKG+NLLQS+SE+NI+ LK EIL S+ V +LVSTDM ELL IAA D+REE ++FSREV+RFGDLC+DPQWHNL R+F K DSDP   KL RE+AEMTMQEL SLAQ+TSELYHE HALDRFEQDY+ K+EEV+SLHLPRKGE L++L SELKHQRKLV++L+KKSLWSK L EVVEKLVDVVT+IHQ IS+ FG++G  ++  + + KP ERLG+AGLALHYA++VTQIDNIASRPTSLPPNMRD LY+GLP ++K  LRSRL   D  EEL++PQ+K ++E+TL WL P+AADTTKAHQGFGWVGEWAN+ G E+GK T    S+IRLQTLYHADK KMD YILEL+  LHRLISLVK++D G K  P +SP  + L    E+ +   N     ++LED N+++  M  +K+  G+SKS EFV  ++ S K+ A SRS GSSPR    +E    KA++LD+LDG++
Sbjct:    1 MGGVCSNGINKRSINKSELEERNHEHHDKSSGFSGKLKSGKSSGG-KQQNKIDDSSHAYPDFDAFEK--TSNLYDSGELQLSFSREL--KPSTPARTPAAAKGPQVSSFLGKAGIAGLEKAVEVLDTLGSSMSNLN-NSGFIGGMASRGNRIAILAFEVANTIAKGANLLQSLSEDNIRFLKKEILHSEAVQQLVSTDMKELLSIAATDKREEFDVFSREVVRFGDLCKDPQWHNLGRFFSKLDSDPVNPKLPREEAEMTMQELTSLAQHTSELYHEFHALDRFEQDYRRKLEEVDSLHLPRKGESLMILQSELKHQRKLVRTLRKKSLWSKPLEEVVEKLVDVVTFIHQEISDAFGDNGLVASGREPT-KP-ERLGVAGLALHYANLVTQIDNIASRPTSLPPNMRDTLYNGLPPSIKTALRSRLPPTDAKEELTVPQIKAEMEKTLHWLVPVAADTTKAHQGFGWVGEWANSAGTEFGKNTNKSTSLIRLQTLYHADKKKMDTYILELVTWLHRLISLVKYRDAGGKVLPSRSPTRKGLNMQGEVLTNNSNVHGAQLSLEDRNLLEEVMKGRKVVPGRSKSQEFVEAKKGSKKVWALSRSTGSSPR----IELGHPKANVLDILDGLD 618    
BLAST of XM_017387768.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZB92 ((Uncharacterized protein {ECO:0000313|EMBL:MPA41587.1}))

HSP 1 Score: 709.138 bits (1829), Expect = 0.000e+0
Identity = 373/629 (59.30%), Postives = 469/629 (74.56%), Query Frame = 0
 
Query:    1 MGGLCTGGTIKHHRQSQGKADHDYSSDNNSKNIDKKTSDGLEEEESYDGGMNGSAGFEFYEKKRTPHIFDSGELNFNISNQFLNRRSAAARTPPATKGPHMNSFFGKAGIAGLERAVDVLDTLGSSMTNMHAGSGFAYNLASRGNKVSILAFEVANTIAKGSNLLQSISEENIQILKDEILQSDGVLRLVSTDMTELLKIAAIDQREELNIFSREVIRFGDLCRDPQWHNLDRYFLKFDSDPAAGKLLREQAEMTMQELLSLAQYTSELYHEMHALDRFEQDYQTKVEEVESLHLPRKGEGLLLLHSELKHQRKLVKSLKKKSLWSKSLVEVVEKLVDVVTYIHQHISEVFGNDGASSTEEKSSGKPDERLGIAGLALHYAHIVTQIDNIASRPTSLPPNMRDGLYSGLPVNVKKRLRSRLQSLDVHEELSIPQMKTQIERTLKWLAPIAADTTKAHQGFGWVGEWANTGIEYGK--TTKNSVIRLQTLYHADKGKMDLYILELIICLHRLISLVKHKDNGSKAQPLQSPVERELVPDHEIP-----SEVQNT----ITLEDGNVIDNSMNRQKLF-GKSKSLEFVMGRRKSLKIRAPSRSAGSSPRTATALERRQSKASILDVLDGIE 617
            MGG+C+GGT+K   + Q K+   +S   NS N     S G +EEE Y          + Y+K   P  +DSGEL F IS++   + S   RT P TK P  +SF G+AG+ GLERAV+VLDTLGSSM+N++A SGF   +ASRGNK+ ILAFE+ANTIAKG+NLLQS+SEEN+Q LK EIL S+GV +LVSTDM ELL IAA D+REE +IFSREVIRFGDLC+DPQWHNL R+F + DS+ A  K LRE+AEMTMQEL +LAQ+TSELYHE++ALDRFEQDY+ K+EEVESLHLPR+GE +++L SELK Q+KLV+SLKK+SLW+KSL EVVEKLVD+VT+IHQ I + FG++G      K   KP ERLG+AGLALHYA+++ QIDNIASRPTSLPPNMRD LY GLP +VK  LRSRLQ +D  EEL+IPQ+K ++E+TL+WL P+A +TTKAHQGFGWVGEWANTG E+ K  TT N++IRLQTLYHADK K DLYI EL+  LHRLI+L++ +DNG K  P++SP  + L+   E+      S+   T    ++ ED N+++  M R++L  G SKS EF M + +  K+ A SRSAGSSP     LER   K+S+LDVLDG++
Sbjct:    1 MGGVCSGGTMKRKPEFQEKS-LGFSGKLNSVN-----SFGKQEEEPY-----SYPDMDAYQK--MPQSYDSGELLFFISSEL--KPSTPTRTGP-TKVPQKSSFLGRAGVVGLERAVEVLDTLGSSMSNLNANSGFVSGMASRGNKIFILAFEIANTIAKGANLLQSLSEENVQFLKKEILHSEGVQQLVSTDMKELLSIAAADKREEFDIFSREVIRFGDLCKDPQWHNLGRFFSRLDSEDATHKQLREEAEMTMQELTTLAQHTSELYHELNALDRFEQDYRQKLEEVESLHLPRRGESVMILQSELKQQKKLVRSLKKESLWAKSLEEVVEKLVDIVTFIHQEILQAFGDNGLVLV-SKDVNKP-ERLGVAGLALHYANVINQIDNIASRPTSLPPNMRDALYHGLPNSVKTALRSRLQIVDAKEELTIPQIKAEMEKTLQWLVPVATNTTKAHQGFGWVGEWANTGTEFSKKTTTNNNLIRLQTLYHADKQKTDLYIFELVTWLHRLINLIRQRDNGIKILPVRSPTRKGLIFQPEMQRLPSFSDFHKTHIVQLSPEDRNLLEEVMRRRRLVPGVSKSQEFAMAKNRGSKVWALSRSAGSSPN--RELER--PKSSVLDVLDGLD 607    
BLAST of XM_017387768.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZDQ4 ((Uncharacterized protein {ECO:0000313|EMBL:MPA41586.1}))

HSP 1 Score: 700.664 bits (1807), Expect = 0.000e+0
Identity = 366/630 (58.10%), Postives = 462/630 (73.33%), Query Frame = 0
 
Query:    1 MGGLCTGGTIKHHRQSQGKADHDYSSDNNSKNIDKKTSDGLEEEESYDGGMNGSAGFEFYEKKRTPHIFDSGELNFNISNQFLNRRSAAARTPPATKGPHMNSFFGKAGIAGLERAVDVLDTLGSSMTNMHAGSGFAYNLASRGNKVSILAFEVANTIAKGSNLLQSISEENIQILKDEILQSDGVLRLVSTDMTELLKIAAIDQREELNIFSREVIRFGDLCRDPQWHNLDRYFLKFDSDPAAGKLLREQAEMTMQELLSLAQYTSELYHEMHALDRFEQDYQTKVEEVESLHLPRKGEGLLLLHSELKHQRKLVKSLKKKSLWSKSLVEVVEKLVDVVTYIHQHISEVFGNDGASSTE-EKSSGKPDERLGIAGLALHYAHIVTQIDNIASRPTSLPPNMRDGLYSGLPVNVKKRLRSRLQSLDVHEELSIPQMKTQIERTLKWLAPIAADTTKAHQGFGWVGEWANTGIEYGK--TTKNSVIRLQTLYHADKGKMDLYILELIICLHRLISLVKHKDNGSKAQPLQSPVERELVPDHEIP-----SEVQNT----ITLEDGNVIDNSMNRQKLF-GKSKSLEFVMGRRKSLKIRAPSRSAGSSPRTATALERRQSKASILDVLDGIE 617
            MGG+C+GGT+K  +    +    +S    S     K+  G ++E+ +          + +E  R P  +DSGEL  +IS +   + S   RT P TK P  NSF G+AGI GLERAV+VLDTLGSSM+N++  SGF   +ASRGNKVSILAFE+ANTIAKG+NLLQS+SEEN+Q LK EIL S+GV +LVSTDM ELL IAA D+REE +IFSREVIRFGDLC+DPQWHNL R+F + DS+ A  K LRE+AEMTMQEL +LAQ+TSELYHE++ALDRFEQDY+ K+EEVESLHLPR+GE +++L SELK Q+KLV+SLKK+SLW+KSL EVVEKLVD+VT+IHQ I + FG++G       K   KP ERLG+AGLALHYA+++ QIDNIASRPTSLPPNMRD LY GLP +VK  LRSRLQ +D  EEL+IPQ+K ++E+TL+WL P+A +TTKAHQGFGWVGEWANTG E+ K  TT N++IRLQTLYHADK K DLYI EL+  LHRLI+L + +DNG K  P++SP  + L+   E+      S+   T    ++ ED N+++  M R++L  G SKS EF M + +  K+ A SRSAGSSP      E    K+S+LDVLDG++
Sbjct:    1 MGGVCSGGTMKLPKPEFQEKSSGFSGKLKSM----KSFGGKQKEKPH-----SYPDMDVFE--RMPQNYDSGELRLSISREL--KPSTPTRTGP-TKMPQKNSFLGRAGIVGLERAVEVLDTLGSSMSNLNTNSGFVSGMASRGNKVSILAFEIANTIAKGANLLQSLSEENVQFLKKEILHSEGVQQLVSTDMKELLSIAAADKREEFDIFSREVIRFGDLCKDPQWHNLGRFFSRLDSEDATHKQLREEAEMTMQELTTLAQHTSELYHELNALDRFEQDYRQKLEEVESLHLPRRGESVMILQSELKQQKKLVRSLKKESLWAKSLEEVVEKLVDIVTFIHQEILQAFGDNGLVLVSIGKDVNKP-ERLGVAGLALHYANVINQIDNIASRPTSLPPNMRDALYHGLPNSVKTALRSRLQIVDAKEELTIPQIKAEMEKTLQWLVPVATNTTKAHQGFGWVGEWANTGTEFSKKTTTNNNLIRLQTLYHADKQKTDLYIFELVTWLHRLINLTRQRDNGIKILPVRSPTRKGLIFQPEMQRLPSFSDFHKTHIVQLSPEDRNLLEEVMRRRRLVPGVSKSQEFAMAKNRGSKVWALSRSAGSSPNR----ELESPKSSVLDVLDGLD 611    
BLAST of XM_017387768.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B4R1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8537514.1}))

HSP 1 Score: 697.582 bits (1799), Expect = 0.000e+0
Identity = 371/632 (58.70%), Postives = 460/632 (72.78%), Query Frame = 0
 
Query:    1 MGGLCTGGTIKHHRQSQGKADHDYSSDNNSKNIDKKTSDGLEEEESYDGGMNGSAGFEFYEKKR---TPHIFDSGELNFNISNQFLNRRSAAARTPPATKGPHMNSFFGKAGIAGLERAVDVLDTLGSSMTNMHAGSGFAYNLASRGNKVSILAFEVANTIAKGSNLLQSISEENIQILKDEILQSDGVLRLVSTDMTELLKIAAIDQREELNIFSREVIRFGDLCRDPQWHNLDRYFLKFDSDPAAGKLLREQAEMTMQELLSLAQYTSELYHEMHALDRFEQDYQTKVEEVESLHLPRKGEGLLLLHSELKHQRKLVKSLKKKSLWSKSLVEVVEKLVDVVTYIHQHISEVFGNDGASSTEEKSSGKPDERLGIAGLALHYAHIVTQIDNIASRPTSLPPNMRDGLYSGLPVNVKKRLRSRLQSLDVHEELSIPQMKTQIERTLKWLAPIAADTTKAHQGFGWVGEWANTGIEYGK--TTKNSVIRLQTLYHADKGKMDLYILELIICLHRLISLVKHKDNGSKAQPLQSPVERE--LVPDHEIPSEVQN-------TITLEDGNVIDNSMNRQKLF-GKSKSLEFVMGRRKSLKIRAPSRSAGSSPRTATALERRQSKASILDVLDGIE 617
            MGG+C+GGT+K   + Q K      S   S  +      G +EEE Y           + EK R   TPH FDSG+L  +IS +   + S   RT P TK P  +SF G+AGI GLERAV+VLDTLGSSM+N++  SGFA  +ASRGNK+SILAFE+ANTIAKGSNLLQS+SEEN+Q LK EIL S+GV +LVST+M ELL IAA D+REE +IFSREVIRFGDLC+DPQWHNLDR+F K DS+    +  RE+AEMTMQEL SLA +TSELYHE++ LDRFEQDY+ KVEEVESLHLPRKGEG+++L SELKHQ+KLV+SLKK+SLW+KSL EVVEKLVD+VT+IH  I   FG++G      K   KP ERLG+AGLALHYA+++ QIDNIASRPTSLPPNMRD LY GLP +VK  LRSR+Q++D  EEL+IPQ+K ++E+TL+WL P+A +TTKAHQGFGWVGEWANTG E+ K  TT +++IRLQTLYHA+K K DLYILEL+  LHRLISLV+ +DNG K  P +SP  +   L P+ +    + N        ++ ED N+++  M R++L  G SKS EF M + +  K+ A SRS GSSP     LER   K++ LDV D +E
Sbjct:    1 MGGVCSGGTMKSKTEFQEK------SSGFSGKLKSLKGFGKQEEEPYS----------YPEKDRFEKTPHSFDSGDLRLSISREL--KPSTPTRTGP-TKVPQKSSFLGRAGIVGLERAVEVLDTLGSSMSNLNTNSGFASGIASRGNKISILAFEIANTIAKGSNLLQSLSEENVQFLKKEILHSEGVQQLVSTEMKELLSIAAADKREEFDIFSREVIRFGDLCKDPQWHNLDRFFSKLDSEDDTHRPNREEAEMTMQELTSLAHHTSELYHELNGLDRFEQDYRQKVEEVESLHLPRKGEGIMILQSELKHQKKLVRSLKKESLWAKSLEEVVEKLVDIVTFIHHEILRAFGDNGLVFV-SKDVNKP-ERLGVAGLALHYANVINQIDNIASRPTSLPPNMRDALYHGLPNSVKTALRSRIQTVDAKEELTIPQIKAEMEKTLQWLVPVATNTTKAHQGFGWVGEWANTGTEFSKKATTNSNLIRLQTLYHAEKQKTDLYILELVTWLHRLISLVRQRDNGIKTLPFRSPTHKGPILQPELQRVPSLSNLHKSQCVQLSPEDRNLLEEVMKRRRLVPGVSKSQEFTMAKNRGSKVWALSRSVGSSP--DRELER--PKSNDLDVSDVLE 607    
BLAST of XM_017387768.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4D9A251 ((Uncharacterized protein {ECO:0000313|EMBL:TEY51637.1}))

HSP 1 Score: 695.271 bits (1793), Expect = 0.000e+0
Identity = 365/632 (57.75%), Postives = 471/632 (74.53%), Query Frame = 0
 
Query:    1 MGGLCTGGTIKHHRQ--------SQGKADHDYSSDNNSKNIDKKTSDGLEEEESYDGGMNGSAGFEFYEKKRTPHIFDSGELNFNISNQFLNRRSAAARTPPATKGPHMNSFFGKAGIAGLERAVDVLDTLGSSMTNMHAGSGFAYNLASRGNKVSILAFEVANTIAKGSNLLQSISEENIQILKDEILQSDGVLRLVSTDMTELLKIAAIDQREELNIFSREVIRFGDLCRDPQWHNLDRYFLKFDSDPAAGKLLREQAEMTMQELLSLAQYTSELYHEMHALDRFEQDYQTKVEEVESLHLPRKGEGLLLLHSELKHQRKLVKSLKKKSLWSKSLVEVVEKLVDVVTYIHQHISEVFGNDGASSTEEKSSGKPDERLGIAGLALHYAHIVTQIDNIASRPTSLPPNMRDGLYSGLPVNVKKRLRSRLQSLDVHEELSIPQMKTQIERTLKWLAPIAADTTKAHQGFGWVGEWANTGIEYGK--TTKNSVIRLQTLYHADKGKMDLYILELIICLHRLISLVKHKDNGSKAQPLQSPVERELVPDHEIPSEVQNT----ITLEDGNVIDNSMNRQKLF-GKSKSLEFVMGRRKSLKIRAPSRSAGSSPRTATALERRQSKASILDVLDGIE 617
            MGG+C+GGT++ +R+        S G +    S  + S+   +K    + ++ES+    + SAG E  +K     +FDSGEL  ++ +  LN  S  AR P A K P M SF GKAGI GLE+AV+VLDTLGSSMTN+++G GF  +++SRGN++ ILAFEVANTIAKG+NLLQS+SEEN+Q LK E+L S+GV +LVSTD+ ELL+IAA D+REE  +FSREV+RFG++C+DPQWHNLDR+F K DSD    K LRE AEMTMQEL SLAQ+TSELYHE HALDRFEQDYQ K++EV+SLHLPRKGE L +L +ELKHQRKLV+SLKKKSLWSKSL +VVEKLVD+VT+IHQ I  VFG++G S   + SS K  ERLG+AGLALHYA+I+TQIDN+ASRPTSLPPNMRD LY+GLP  +K  LRSRLQ+ D+ EEL++ Q+K ++E++L+WL P+A DTTKAHQGFGWVGEWAN G E+GK   T +++IRLQTLYHADK K+D  ILEL+  LHRL+SLV+++DNG KA P +SP  +    + +  S+   T    ++ ED N++++ M R+ L  G SKS EFV  R+   ++ A SRS G+SPR      + Q+ A +LDVLDG++
Sbjct:    1 MGGVCSGGTVRKNRKASDVERAKSSGFSGKLKSVGSFSRQKKQKNDGDVGDDESF----SFSAGVEEIKKAPQRRLFDSGELYQSVMSGELNS-STPARAP-AYKTPQMTSFLGKAGIVGLEKAVEVLDTLGSSMTNLNSG-GFTTSVSSRGNRICILAFEVANTIAKGANLLQSLSEENVQFLKKEVLNSEGVRQLVSTDIDELLRIAASDKREEFEVFSREVVRFGNMCKDPQWHNLDRFFSKLDSDTDISKQLREDAEMTMQELTSLAQHTSELYHEFHALDRFEQDYQRKLDEVDSLHLPRKGESLAMLQTELKHQRKLVRSLKKKSLWSKSLEQVVEKLVDIVTFIHQEIPAVFGDNGLSHAGKVSSSKT-ERLGVAGLALHYANIITQIDNVASRPTSLPPNMRDTLYNGLPPTIKTALRSRLQT-DIKEELTVRQIKDEMEKSLQWLVPVATDTTKAHQGFGWVGEWANNGNEFGKKTATPSNLIRLQTLYHADKRKVDSCILELVTWLHRLVSLVRYRDNGLKALPQRSPTRKGSNINMDKHSDKTKTHKAQLSSEDKNLLEDVMKRRNLVPGLSKSQEFVKSRKN--RVWALSRSTGNSPRREI---KHQTAAHVLDVLDGLD 618    
BLAST of XM_017387768.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A022RIS7 ((Uncharacterized protein {ECO:0000313|EMBL:EYU38800.1}))

HSP 1 Score: 694.501 bits (1791), Expect = 0.000e+0
Identity = 371/633 (58.61%), Postives = 471/633 (74.41%), Query Frame = 0
 
Query:    1 MGGLCTGGTIKHHRQSQGKADHDYSSDNNSK-----NIDKKTSDGLEEEESYDGGMNGSAGFEFYEKKRTPHIFDSGELNFNISNQFLNRRSAAARTPPATKGPHMNSFFGKAGIAGLERAVDVLDTLGSSMTNMHAGSGFAYNLASRGNKVSILAFEVANTIAKGSNLLQSISEENIQILKDEILQSDGVLRLVSTDMTELLKIAAIDQREELNIFSREVIRFGDLCRDPQWHNLDRYFLKFDSDPAAGKLLREQAEMTMQELLSLAQYTSELYHEMHALDRFEQDYQTKVEEVESLHLPRKGEGLLLLHSELKHQRKLVKSLKKKSLWSKSLVEVVEKLVDVVTYIHQHISEVF--GNDGASSTEEKSSGKPDERLGIAGLALHYAHIVTQIDNIASRPTSLPPNMRDGLYSGLPVNVKKRLRSRLQSLDVHEELSIPQMKTQIERTLKWLAPIAADTTKAHQGFGWVGEWANTGIEYGK--TTKNSVIRLQTLYHADKGKMDLYILELIICLHRLISLVKHKDNGSKAQPLQSPVERELVPDHEIPSEVQNTITLEDGNVIDNSMNRQKLF-GKSKSLEFVMGRRKSLKIRAPSRSAGSSPRTATALERRQSKASILDVLDGIEQHSELS 623
            MGG+C+GGT+K  R+   + + +  S  + K     +  K+  +  E+  +Y    + S  FE    K   ++FDSGE+N  I+ +F  + SA A+T  A KGP   SFFGKAGI GLE+AV+VLDTLGSSMTN+++G GF   + SRGN++SILAFEVANTI KG+NLLQS+SE+NIQ LK E+L S+GV +LV+TDM ELL+IAA D+REE ++FSREVIRFG+LC+DPQWHNLDR+F K +SD    K LRE+A+MTM EL +LAQ+TSELYHE+HALDRF+QDYQ K+EEV+SLHLPRKGE L +L SELKHQRKLV++LKKKSLWSKSL +VVEKLVD+VT+IHQ I EVF  G++G  S  + S+ KP ERLG AGLALHYA+I+TQIDNIASRPTSLPPNMRD LYSGLP  VK  LRSRL  +D  EEL++PQ+K ++E++L+WL P+A DTTKAHQGFGWVGEWANTG ++GK  +T N++IRLQTLYHADK K+D  ILEL+  LHRLISLV+++DNG K  P+  P     V  +    +VQ  ++ ED N++D+ M R+KL  G SKS EFV+ + K  KI A SRS GSSPR       +  K  +LD+LDG++     S
Sbjct:    1 MGGVCSGGTVKKSRRRTVEVEDEKRSGFSGKLKSIGSFGKQNKNNDEDSYTYP---DESNVFE----KAPRNLFDSGEMNMTIAREF--KLSAQAKTA-ANKGPQTTSFFGKAGIVGLEKAVEVLDTLGSSMTNLNSG-GFTTGVTSRGNRISILAFEVANTIVKGANLLQSLSEDNIQFLKKEVLNSEGVRKLVTTDMDELLRIAAADKREEFDVFSREVIRFGNLCKDPQWHNLDRFFSKLESDIDIHKQLREEADMTMHELTTLAQHTSELYHELHALDRFDQDYQRKLEEVDSLHLPRKGESLTMLLSELKHQRKLVRNLKKKSLWSKSLEQVVEKLVDIVTFIHQEIPEVFGVGDNGLRSAGKVSTSKP-ERLGGAGLALHYANIITQIDNIASRPTSLPPNMRDTLYSGLPPTVKNALRSRLL-IDDKEELTVPQIKAEMEKSLQWLVPVATDTTKAHQGFGWVGEWANTGNDFGKKTSTPNNLIRLQTLYHADKNKVDTCILELVTWLHRLISLVRYRDNGHK--PILPPARSPKVQLNN--GKVQ--LSSEDRNLLDDVMTRRKLVPGLSKSQEFVVVKNKKSKIWAMSRSTGSSPRRGLM---KHQKEDVLDILDGLDSSFSFS 611    
BLAST of XM_017387768.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2Z7AEI6 ((Uncharacterized protein {ECO:0000313|EMBL:KZV20133.1}))

HSP 1 Score: 686.797 bits (1771), Expect = 0.000e+0
Identity = 366/627 (58.37%), Postives = 461/627 (73.52%), Query Frame = 0
 
Query:    1 MGGLCTGGTIKHHRQSQGKADHDYSSDNNSKNIDKKTSDGLEEEESYDGGMNGSAGFEFYEKKRTPH-IFDSGELNFNISNQFLNRRSAAARTPPATKGPHMNSFFGKAGIAGLERAVDVLDTLGSSMTNMHAGSGFAYNLASRGNKVSILAFEVANTIAKGSNLLQSISEENIQILKDEILQSDGVLRLVSTDMTELLKIAAIDQREELNIFSREVIRFGDLCRDPQWHNLDRYFLKFDSDPAAGKLLREQAEMTMQELLSLAQYTSELYHEMHALDRFEQDYQTKVEEVESLHLPRKGEGLLLLHSELKHQRKLVKSLKKKSLWSKSLVEVVEKLVDVVTYIHQHISEVFGNDGASSTEEKSSGKPDERLGIAGLALHYAHIVTQIDNIASRPTSLPPNMRDGLYSGLPVNVKKRLRSRLQSLDVHEELSIPQMKTQIERTLKWLAPIAADTTKAHQGFGWVGEWANTGIEYGK--TTKNSVIRLQTLYHADKGKMDLYILELIICLHRLISLVKHKDNGSKAQPLQSPVERELVPDHEIPSEVQNT------ITLEDGNVIDNSMNRQKLF-GKSKSLEFVMGRRKSLKIRAPSRSAGSSPRTATALERRQSKASILDVLDGIE 617
            MG +C+GGT+K +R+S+ + + + SS  + K    K+     +++S D         +  +K   P  ++DSGEL+ +IS +   + S  AR P A K P   SF GKAGI GLE+AV+VLDTLGSSMTN+++G GF  N+ASRGNK+SILAFEVANTIAKGSNLL S+SEENIQ LK EIL S+GV +LVSTDM ELL+IAA D+REE ++FSREVIRFG+LC+DPQWHNLDR+F K D DP   K  RE+ EMTMQEL +LAQ+TSELYHE HALDRFEQDYQ K+ E +SL+LPRKGE L +LH+ELKHQRK V+SL+KKSLW KSL +VVEKLVD+VT+IHQ I+  FG+ G  S    S+ K  ERLG+ GLALHYA+I+TQIDNIASRPTSLPPNMRD LY+GLP  VK  LRSR+Q  D HE+LS PQ+K ++E+TL+WL PIA DTTKAHQGFGWVGEWANTG E+GK  +   ++IRLQTLYHADK K++  ILELI  LHRL++LV+++DNG K+ P +SP  + L+    I  E QN       ++ ED N+++  M  +KL  G SKS EFV+ + K  KI A SRS GSSPR       +  K+ +LD+LDG++
Sbjct:    1 MGAVCSGGTVKRNRKSR-EVEQEKSSGFSGK---LKSIGSFAKQKSCDDSYAYPDEIDVCDK--APRKLYDSGELHLSISCEL--KPSTPARAP-ANKQP---SFLGKAGIVGLEKAVEVLDTLGSSMTNLNSG-GFTTNVASRGNKISILAFEVANTIAKGSNLLMSLSEENIQCLKKEILHSEGVQKLVSTDMNELLRIAAADKREEFDVFSREVIRFGNLCKDPQWHNLDRFFSKLDLDPDIHKQPREEVEMTMQELTNLAQHTSELYHEFHALDRFEQDYQQKLGEADSLNLPRKGESLTMLHAELKHQRKFVRSLQKKSLWCKSLEQVVEKLVDIVTFIHQEITVAFGDTGLPSAGRVSTSK-TERLGVVGLALHYANIITQIDNIASRPTSLPPNMRDTLYNGLPPTVKAALRSRIQMFDDHEQLSSPQIKAEMEKTLQWLVPIATDTTKAHQGFGWVGEWANTGNEFGKKASPPTNLIRLQTLYHADKRKVEACILELITWLHRLVNLVRYRDNGLKSMPARSPTRKGLI----INIECQNAAVHKGNLSSEDRNLLEEVMKPRKLVPGLSKSQEFVIAKNKKSKIWA-SRSMGSSPRRGP----KHQKSDVLDILDGLD 604    
Match NameStatsDescription
A0A6I9TKD5E-Value: 0.000e+0, PID: 59.58(uncharacterized protein LOC105166052 isoform X1 {... [more]
A0A6P6UVU6E-Value: 0.000e+0, PID: 59.37(uncharacterized protein LOC113714931 {ECO:0000313... [more]
A0A6P6UR33E-Value: 0.000e+0, PID: 59.21(uncharacterized protein LOC113712786 isoform X1 {... [more]
A0A068UGQ1E-Value: 0.000e+0, PID: 59.21(Uncharacterized protein {ECO:0000313|EMBL:CDP0738... [more]
A0A5B6ZB92E-Value: 0.000e+0, PID: 59.30(Uncharacterized protein {ECO:0000313|EMBL:MPA4158... [more]
A0A5B6ZDQ4E-Value: 0.000e+0, PID: 58.10(Uncharacterized protein {ECO:0000313|EMBL:MPA4158... [more]
A0A5J5B4R1E-Value: 0.000e+0, PID: 58.70(Uncharacterized protein {ECO:0000313|EMBL:KAA8537... [more]
A0A4D9A251E-Value: 0.000e+0, PID: 57.75(Uncharacterized protein {ECO:0000313|EMBL:TEY5163... [more]
A0A022RIS7E-Value: 0.000e+0, PID: 58.61(Uncharacterized protein {ECO:0000313|EMBL:EYU3880... [more]
A0A2Z7AEI6E-Value: 0.000e+0, PID: 58.37(Uncharacterized protein {ECO:0000313|EMBL:KZV2013... [more]
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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.

This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
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