Resource Type:
Polypeptide
Name:
XM_017386985.1
Identifier:
XM_017386985.1-protein
Sequence:
MGIVTSVMGIFGFGLGITIGLVIGYYLFIYFQPTNVENPTVPSLDEKDSK
ALKMLIQELPVWIKYPDHDRVDWLNKFIETMWPYLDKAICKTVKTIVQPI
IAEQIPKYKIDSVQFEVLSLGSLPPVLTGMKVYTTAEKELIMEPSLKWAG
NPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLM
EKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMD
PAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTT
VKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIK
DLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDT
ENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKK
TKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMSLYPKETLGY
VDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS
Sequence Length:
538
Sequence Checksum:
3673b7bbaf435899cb244f6ea42595ce
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017386985.1, derives from mRNA, XM_017386985.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017386985.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017386985.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ACN6 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8528765.1}))
HSP 1 Score: 900.968 bits (2327), Expect = 0.000e+0
Identity = 427/539 (79.22%), Postives = 479/539 (88.87%), Query Frame = 0
Match: A0A5J5ACN6 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8528765.1}))
HSP 1 Score: 900.968 bits (2327), Expect = 0.000e+0
Identity = 427/539 (79.22%), Postives = 479/539 (88.87%), Query Frame = 0
Query: 1 MGIVTSVMGIFGFGLGITIGLVIGYYLFIYFQPTNVENPTVPSLDEKDSKALKMLIQELPVWIKYPDHDRVDWLNKFIETMWPYLDKAICKTVKTIVQPIIAEQIPKYKIDSVQFEVLSLGSLPPVLTGMKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 538
MGIV+++MG FGFG+GITIGLVIGYYLFIYFQPT+V+NP + L E+DS+ L+ L+ E+P+W+K PD DR+DWLNKFIE MWPYLDKAICKT K+I QPIIAEQIPKYKIDSV+F+ L+LG LPP GMKVY+T EKELIMEPS+KWAGNPN+ +A+KAFGLRATVQ VDLQV A PR+TLKPLVP+FPCFAKILVSLMEKPHVDFGLKLLGAD MSIPGLYRFVQ+LIKDQVANMYLWPK LEV IMDPAKA KRPVGIL VKV+RA+KLKKKD LGASDPYVKLKL+EDKLPSKKTTVKHKNLNPEWNEEFH+VVKDPESQ LE VYDWEQVG HDKMG NV+P+KDL PDE KV+TLDL KNMDP DVQNEK RGQ+++E +Y+PF EIP ++E+ + V KAP+GTP GGGLLVII+HE Q +EGK+HTNP RLLFRGE K+TK VKKNRDPRW+EEFQFMLEEPPTNDRIHVEV+STSSRM L+PKE LGYVDI LSDV+ NKRINERYHLIDSKNG IQIEMQWRTSS
Sbjct: 1 MGIVSTIMGFFGFGVGITIGLVIGYYLFIYFQPTDVKNPEIRPLVEQDSQTLQRLLPEIPLWVKNPDFDRIDWLNKFIEVMWPYLDKAICKTAKSIAQPIIAEQIPKYKIDSVEFDALTLGCLPPTFQGMKVYSTEEKELIMEPSVKWAGNPNITIAVKAFGLRATVQIVDLQVSASPRITLKPLVPSFPCFAKILVSLMEKPHVDFGLKLLGADAMSIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKAMKRPVGILNVKVLRAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTTVKHKNLNPEWNEEFHLVVKDPESQALEFHVYDWEQVGKHDKMGQNVIPLKDLTPDEPKVMTLDLLKNMDPNDVQNEKSRGQIMIEMMYRPFADDEIPKESEDPNAVDKAPEGTPDGGGLLVIIVHEAQDLEGKHHTNPHVRLLFRGEEKRTKNVKKNRDPRWEEEFQFMLEEPPTNDRIHVEVISTSSRMGLLHPKEALGYVDINLSDVVSNKRINERYHLIDSKNGRIQIEMQWRTSS 539
BLAST of XM_017386985.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A200RAU5 ((C2 calcium-dependent membrane targeting {ECO:0000313|EMBL:OVA19834.1}))
HSP 1 Score: 897.501 bits (2318), Expect = 0.000e+0
Identity = 423/539 (78.48%), Postives = 486/539 (90.17%), Query Frame = 0
Match: A0A200RAU5 ((C2 calcium-dependent membrane targeting {ECO:0000313|EMBL:OVA19834.1}))
HSP 1 Score: 897.501 bits (2318), Expect = 0.000e+0
Identity = 423/539 (78.48%), Postives = 486/539 (90.17%), Query Frame = 0
Query: 1 MGIVTSVMGIFGFGLGITIGLVIGYYLFIYFQPTNVENPTVPSLDEKDSKALKMLIQELPVWIKYPDHDRVDWLNKFIETMWPYLDKAICKTVKTIVQPIIAEQIPKYKIDSVQFEVLSLGSLPPVLTGMKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 538
MGIV+++MG+FGFG G++IGLVIGYYLFIYFQP++V++P + L E+DS+ L+ L+ E+P+W+K PD+DRVDWLNKFIE MWPYLDKAICKT K I +PIIAEQIPKYKI+SV+FE L+LGSLPP GMKVY T EKELIMEP LKWAGNPNV VAIKAFGL+ATVQ VDLQVFA PR+TLKPLVP+FPCFAKILVSLMEKPHVDFG+KLLGAD MSIPGLYRFVQ+LIKDQVANMYLWPK LEV IMDPAKA+KRPVGIL VKV+RA KLKKKD +GASDPYVKLKL+EDKLPSKKTTVKHKNLNPEWNEEF++VVKDPESQ LE+ VYDWEQVG HDKMGMNV+P+KDL P+ESKV+TLDL KNMDP DVQNEK RGQ+VVE IYKPFK ++P D E+S+ V+KAP+GTP+GGGLLV+I+HE Q +EGK+HTNP R+LFRGE K+TK VKKNRDPRW+EEFQFMLEEPPT+DR+HVEV+STSSRM L+PKETLGYV+I LSDV+ NKRINE+YHLIDSKNG IQIE+QWRTS+
Sbjct: 1 MGIVSTIMGLFGFGFGVSIGLVIGYYLFIYFQPSDVKDPIIRPLVEQDSETLQRLLPEIPLWVKNPDYDRVDWLNKFIELMWPYLDKAICKTAKNITKPIIAEQIPKYKIESVEFEALTLGSLPPTFQGMKVYVTDEKELIMEPCLKWAGNPNVTVAIKAFGLKATVQVVDLQVFAAPRITLKPLVPSFPCFAKILVSLMEKPHVDFGIKLLGADAMSIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKASKRPVGILNVKVLRATKLKKKDLMGASDPYVKLKLTEDKLPSKKTTVKHKNLNPEWNEEFNIVVKDPESQALELNVYDWEQVGKHDKMGMNVIPLKDLTPEESKVMTLDLLKNMDPNDVQNEKSRGQIVVEVIYKPFKEEDMPKDIEDSNTVEKAPEGTPSGGGLLVVIVHEAQDVEGKHHTNPYVRILFRGEEKRTKHVKKNRDPRWEEEFQFMLEEPPTSDRLHVEVISTSSRMGLLHPKETLGYVEINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTST 539
BLAST of XM_017386985.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: E0CQ92 ((Uncharacterized protein {ECO:0000313|EMBL:CBI19897.3}))
HSP 1 Score: 897.116 bits (2317), Expect = 0.000e+0
Identity = 427/539 (79.22%), Postives = 482/539 (89.42%), Query Frame = 0
Match: E0CQ92 ((Uncharacterized protein {ECO:0000313|EMBL:CBI19897.3}))
HSP 1 Score: 897.116 bits (2317), Expect = 0.000e+0
Identity = 427/539 (79.22%), Postives = 482/539 (89.42%), Query Frame = 0
Query: 1 MGIVTSVMGIFGFGLGITIGLVIGYYLFIYFQPTNVENPTVPSLDEKDSKALKMLIQELPVWIKYPDHDRVDWLNKFIETMWPYLDKAICKTVKTIVQPIIAEQIPKYKIDSVQFEVLSLGSLPPVLTGMKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 538
MGIV++++G GFG+GI+IGL IGYYLFIYFQPT+V++P V L E+DSK L+ L+ E+P W+K PD+DRVDWLNKFIE MWPYLDKAICKT K I +PIIAEQIPKYKIDSV+FE L+LGSLPP GMKVY T EKELIME S+KWAGNPN+ VA+KAFGLRATVQ VDLQVFA PR+TLKPLVP+FPCFA I VSLMEKPHVDFGLKLLGADVM+IPGLYR VQ+LIKDQVANMYLWPK LEV IMDPAKA K+PVGIL VKVVRA+KLKKKD +GASDPYVK+KLSEDKLPSKKTTVKHKNLNPEWNEEF++VVKDPESQ LE++VYDWEQVG HDKMGMNV+P+K+L PDE KVLTLDL KNMDP DVQNEK RGQ+V+EA+YKPFK +EIP D E+ + ++KAP+GTPAGGGLLVII+HE Q +EGK+HTNP RLLFRGE +KTK VKKNRDPRW+EEFQFMLEEPPTNDRIHVEVVSTSSRM L+PKETLGYVDI LSDV+ NKRINE+YHLIDSKNG IQIE+QWRTS+
Sbjct: 1 MGIVSTILGFCGFGVGISIGLFIGYYLFIYFQPTDVKDPIVRPLVEQDSKTLQRLLPEIPQWVKNPDYDRVDWLNKFIENMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFEALTLGSLPPTFQGMKVYATDEKELIMELSMKWAGNPNITVAVKAFGLRATVQVVDLQVFAAPRITLKPLVPSFPCFANIFVSLMEKPHVDFGLKLLGADVMAIPGLYRLVQELIKDQVANMYLWPKTLEVPIMDPAKAMKKPVGILSVKVVRAMKLKKKDIMGASDPYVKMKLSEDKLPSKKTTVKHKNLNPEWNEEFNMVVKDPESQALEVIVYDWEQVGKHDKMGMNVIPLKELTPDEPKVLTLDLLKNMDPNDVQNEKSRGQIVLEALYKPFKDTEIPKDLEDPNAIEKAPEGTPAGGGLLVIIVHEAQEVEGKHHTNPYVRLLFRGEERKTKYVKKNRDPRWEEEFQFMLEEPPTNDRIHVEVVSTSSRMGLLHPKETLGYVDINLSDVVSNKRINEKYHLIDSKNGKIQIELQWRTST 539
BLAST of XM_017386985.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R3P0 ((Synaptotagmin-2 like {ECO:0000313|EMBL:PSS19856.1}))
HSP 1 Score: 895.96 bits (2314), Expect = 0.000e+0
Identity = 421/539 (78.11%), Postives = 484/539 (89.80%), Query Frame = 0
Match: A0A2R6R3P0 ((Synaptotagmin-2 like {ECO:0000313|EMBL:PSS19856.1}))
HSP 1 Score: 895.96 bits (2314), Expect = 0.000e+0
Identity = 421/539 (78.11%), Postives = 484/539 (89.80%), Query Frame = 0
Query: 1 MGIVTSVMGIFGFGLGITIGLVIGYYLFIYFQPTNVENPTVPSLDEKDSKALKMLIQELPVWIKYPDHDRVDWLNKFIETMWPYLDKAICKTVKTIVQPIIAEQIPKYKIDSVQFEVLSLGSLPPVLTGMKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 538
MG+V+++MG FGFG+GI+IGLVIGYYLFIYFQP++V++P + L E+DS+ L+ L+ E+P+W+K PD+DRVDWLNKFIETMWPYLDKAICKTVKTI +PIIAEQIPKYKI+SV+FE L+LG LPP GMKVY T EKELIMEPS+KWAGNPN+++A KAFGLRATVQ VDLQVFA PR+TLKPLVP+FPCFAKILVSLMEKPHVDFGLK+LGAD MSIPGLYRFVQ+LIKDQ+ANMYLWPK LEV IMDPAKA KRPVGIL VK+VRA+KLKKKD LGASDPYVKLKL+EDKLPSKKTTVKHKNLNPEWNEEF++VVKDP+SQ LE+ VYDWEQVG HDKMG+NVVP+++L PDE KV+TLDL KNMDP D QNEK RGQ+V+E IYKPFK E+P DTE S+ V+KAP+GTP GGGLLV+I+HE Q +EGK+HTNP RLLFRGE ++TK VKKNRDPRW+EEFQFM++EPPTNDRIHVEVVS SSRM L+PKE LGYVDI LSDV+ NKRINERYHLIDSKNG +QIE+QWRTSS
Sbjct: 1 MGLVSTIMGFFGFGVGISIGLVIGYYLFIYFQPSDVKDPVIRPLVEQDSQTLQRLLPEIPLWVKNPDYDRVDWLNKFIETMWPYLDKAICKTVKTIAKPIIAEQIPKYKIESVEFEALTLGCLPPTFQGMKVYLTEEKELIMEPSMKWAGNPNIIIAAKAFGLRATVQVVDLQVFASPRITLKPLVPSFPCFAKILVSLMEKPHVDFGLKVLGADAMSIPGLYRFVQELIKDQIANMYLWPKTLEVPIMDPAKAMKRPVGILSVKIVRAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTTVKHKNLNPEWNEEFNLVVKDPQSQALEVNVYDWEQVGKHDKMGLNVVPLQELTPDEPKVVTLDLLKNMDPNDAQNEKSRGQIVLELIYKPFKDDEMPKDTEESNAVEKAPEGTPDGGGLLVVIVHEAQDLEGKHHTNPQVRLLFRGEERRTKPVKKNRDPRWEEEFQFMMDEPPTNDRIHVEVVSNSSRMGLLHPKEALGYVDINLSDVVSNKRINERYHLIDSKNGRVQIELQWRTSS 539
BLAST of XM_017386985.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TEJ3 ((synaptotagmin-2 {ECO:0000313|RefSeq:XP_011083467.1}))
HSP 1 Score: 891.723 bits (2303), Expect = 0.000e+0
Identity = 417/538 (77.51%), Postives = 477/538 (88.66%), Query Frame = 0
Match: A0A6I9TEJ3 ((synaptotagmin-2 {ECO:0000313|RefSeq:XP_011083467.1}))
HSP 1 Score: 891.723 bits (2303), Expect = 0.000e+0
Identity = 417/538 (77.51%), Postives = 477/538 (88.66%), Query Frame = 0
Query: 1 MGIVTSVMGIFGFGLGITIGLVIGYYLFIYFQPTNVENPTVPSLDEKDSKALKMLIQELPVWIKYPDHDRVDWLNKFIETMWPYLDKAICKTVKTIVQPIIAEQIPKYKIDSVQFEVLSLGSLPPVLTGMKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMSLYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 538
MGI+++V+G+FGFG+G+ IG VIGY+LFIY+QPT+V++P + L EKDSK+L+ L+ E+P+WIK PD+DRVDWLNKFIE MWPYLDKAICK K I +PIIAEQIPKYKIDSV+FE L+LG LPP GMKVY T EKELIME LKWA NPN+LVA+KAFGLRATVQ +DLQVFACPR+TLKPLVP+FPCFA I VSLMEKPHVDFG+KLLGAD MSIPG YR VQ++IKDQVANMYLWPK LEVQIMDPAKA K+PVGIL V VVRA+KL+KKD LGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEF VVKDPE+Q LE+VVYDWEQVG+HDKMG+NV+P+KDL P+E K +TL+L KN++P DVQNEK RGQLVVE YKPFK +E+P D E++D VQKAP+GTP GGGLLVII+HE Q +EGKNHTNPSAR+LFRGE +KTK VKKNRDPRW+EEFQFML+EPPTNDR+HVEV+STS R L+ KETLGYVDIYLSDV+ NKRINERYHLIDSKNG IQIEMQWRT+S
Sbjct: 1 MGIISTVLGVFGFGIGVAIGFVIGYFLFIYYQPTDVKDPEIRPLVEKDSKSLQQLLPEIPIWIKNPDYDRVDWLNKFIEYMWPYLDKAICKMAKKIAEPIIAEQIPKYKIDSVEFETLTLGCLPPTFEGMKVYNTEEKELIMELGLKWAANPNILVAVKAFGLRATVQVLDLQVFACPRITLKPLVPSFPCFANIHVSLMEKPHVDFGVKLLGADAMSIPGAYRIVQEIIKDQVANMYLWPKRLEVQIMDPAKAMKKPVGILHVNVVRAMKLRKKDLLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFTFVVKDPEAQALELVVYDWEQVGSHDKMGLNVIPLKDLTPEEPKTITLELLKNLNPDDVQNEKSRGQLVVEVNYKPFKDNELPADVEDADSVQKAPEGTPEGGGLLVIIVHEAQDLEGKNHTNPSARILFRGEERKTKVVKKNRDPRWEEEFQFMLDEPPTNDRVHVEVLSTSKRSLLHAKETLGYVDIYLSDVVSNKRINERYHLIDSKNGRIQIEMQWRTAS 538
BLAST of XM_017386985.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TFG6 ((synaptotagmin-2 {ECO:0000313|RefSeq:XP_011083585.1}))
HSP 1 Score: 891.338 bits (2302), Expect = 0.000e+0
Identity = 417/538 (77.51%), Postives = 477/538 (88.66%), Query Frame = 0
Match: A0A6I9TFG6 ((synaptotagmin-2 {ECO:0000313|RefSeq:XP_011083585.1}))
HSP 1 Score: 891.338 bits (2302), Expect = 0.000e+0
Identity = 417/538 (77.51%), Postives = 477/538 (88.66%), Query Frame = 0
Query: 1 MGIVTSVMGIFGFGLGITIGLVIGYYLFIYFQPTNVENPTVPSLDEKDSKALKMLIQELPVWIKYPDHDRVDWLNKFIETMWPYLDKAICKTVKTIVQPIIAEQIPKYKIDSVQFEVLSLGSLPPVLTGMKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMSLYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 538
MGI+++V+G+FGFG+G+ IG VIGY+LFIY+QPT+V++P + L EKDSK+L+ L+ E+P+WIK PD+DRVDWLNKFIE MWPYLDKAICK K I +PIIAEQIPKYKIDSV+FE L+LG LPP GMKVY T EKELIME LKWA NPN+LVA+KAFGLRATVQ +DLQVFACPR+TLKPLVP+FPCFA I VSLMEKPHVDFG+KLLGAD MSIPG YR VQ++IKDQVANMYLWPK LEVQIMDPAKA K+PVGIL V VVRA+KL+KKD LGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEF VVKDPE+Q LE+VVYDWEQVG+HDKMG+NV+P+KDL P+E K +TL+L KN++P DVQNEK RGQLVVE YKPFK +E+P D E++D VQKAP+GTP GGGLLVII+HE Q +EGKNHTNPSAR+LFRGE +KTK VKKNRDPRW+EEFQFML+EPPTNDR+HVEV+STS R L+ KETLGYVDIYLSDV+ NKRINERYHLIDSKNG IQIEMQWRT+S
Sbjct: 1 MGIISTVLGVFGFGIGVAIGFVIGYFLFIYYQPTDVKDPEIRPLVEKDSKSLQQLLPEIPIWIKNPDYDRVDWLNKFIEYMWPYLDKAICKMAKKIAEPIIAEQIPKYKIDSVEFETLTLGCLPPTFEGMKVYNTEEKELIMELGLKWAANPNILVAVKAFGLRATVQVLDLQVFACPRITLKPLVPSFPCFANIHVSLMEKPHVDFGVKLLGADAMSIPGAYRIVQEIIKDQVANMYLWPKRLEVQIMDPAKAMKKPVGILHVNVVRAMKLRKKDLLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFTFVVKDPEAQALELVVYDWEQVGSHDKMGLNVIPLKDLTPEEPKTITLELLKNLNPDDVQNEKSRGQLVVEINYKPFKDNELPADVEDADSVQKAPEGTPEGGGLLVIIVHEAQDLEGKNHTNPSARILFRGEERKTKVVKKNRDPRWEEEFQFMLDEPPTNDRVHVEVLSTSKRSLLHAKETLGYVDIYLSDVVSNKRINERYHLIDSKNGRIQIEMQWRTAS 538
BLAST of XM_017386985.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YHQ5 ((Putative synaptotagmin-2 {ECO:0000313|EMBL:MPA31125.1}) (2.7.7.7 {ECO:0000313|EMBL:MPA31125.1}))
HSP 1 Score: 887.871 bits (2293), Expect = 0.000e+0
Identity = 420/539 (77.92%), Postives = 478/539 (88.68%), Query Frame = 0
Match: A0A5B6YHQ5 ((Putative synaptotagmin-2 {ECO:0000313|EMBL:MPA31125.1}) (2.7.7.7 {ECO:0000313|EMBL:MPA31125.1}))
HSP 1 Score: 887.871 bits (2293), Expect = 0.000e+0
Identity = 420/539 (77.92%), Postives = 478/539 (88.68%), Query Frame = 0
Query: 1 MGIVTSVMGIFGFGLGITIGLVIGYYLFIYFQPTNVENPTVPSLDEKDSKALKMLIQELPVWIKYPDHDRVDWLNKFIETMWPYLDKAICKTVKTIVQPIIAEQIPKYKIDSVQFEVLSLGSLPPVLTGMKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 538
MGIV+++MG FGFG+GITIGLVIGYYLFIYFQPT+V++P + L E+DS+ L+ L+ E+P+W+K PD DR+DWLNKFIE MWPYLDKAICKT K+I QPIIAEQIPKYKI+SV+FE L+LG LPP GMKVY+T EKELIMEPS+KWAGNPN+ +A+KAFGLRATVQ VDLQVFA PR+TLKPLVP+FPCFA ILVSLMEKPHVDFGLKLLGAD MSIPGLYRFVQ+LIKDQVANMYLWPK LEV IMDPAKA KRPVG+L VKV+RA+KLKKKD LGASDPYVKLKL+EDKLPSKKTTVK KNLNPEWNEEF++VVKDPE+Q LE+ VYDWEQVG HDKMG+NVVP+K+L PDE KV TLDL KNMDP DVQNEK RGQ+++E YKPF E+P D E+ + V+KAP+GTP GGGLLV+I+HE Q +EGK+HTNP RLLF+GE K+TK VKKNRDPRW+EEFQFMLEEPPTNDRIHVEV+STSSRM L+PKE LGYVDI LSDV+ NKRINERYHLIDSKNG IQIE+QWRTSS
Sbjct: 1 MGIVSTIMGFFGFGVGITIGLVIGYYLFIYFQPTDVKDPVIRPLVEQDSQTLQRLLPEIPLWVKNPDFDRIDWLNKFIEYMWPYLDKAICKTAKSIAQPIIAEQIPKYKIESVEFEALTLGCLPPTFQGMKVYSTEEKELIMEPSVKWAGNPNITIAVKAFGLRATVQVVDLQVFASPRITLKPLVPSFPCFANILVSLMEKPHVDFGLKLLGADAMSIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKAMKRPVGLLNVKVLRAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTTVKQKNLNPEWNEEFNLVVKDPETQALEVNVYDWEQVGKHDKMGLNVVPLKELTPDEPKVFTLDLLKNMDPNDVQNEKSRGQIMLELTYKPFNDDEMPKDIEDPNAVEKAPEGTPDGGGLLVVIVHEAQDLEGKHHTNPHVRLLFKGEEKRTKPVKKNRDPRWEEEFQFMLEEPPTNDRIHVEVISTSSRMGLLHPKEALGYVDINLSDVVSNKRINERYHLIDSKNGRIQIELQWRTSS 539
BLAST of XM_017386985.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GUL2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5943134.1}))
HSP 1 Score: 882.093 bits (2278), Expect = 0.000e+0
Identity = 423/539 (78.48%), Postives = 474/539 (87.94%), Query Frame = 0
Match: A0A7J7GUL2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5943134.1}))
HSP 1 Score: 882.093 bits (2278), Expect = 0.000e+0
Identity = 423/539 (78.48%), Postives = 474/539 (87.94%), Query Frame = 0
Query: 1 MGIVTSVMGIFGFGLGITIGLVIGYYLFIYFQPTNVENPTVPSLDEKDSKALKMLIQELPVWIKYPDHDRVDWLNKFIETMWPYLDKAICKTVKTIVQPIIAEQIPKYKIDSVQFEVLSLGSLPPVLTGMKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 538
MGIV+++MG FGFG+GI+IGLVIGYYLFIYFQPT+V +P + L E+DS+ L+ L+ E+P+W+K PD+DRVDWLNKFIETMWPYLDKAICKTVK I PIIAEQIPKYKIDSV+FE LSLGSLPP GMKVY T EKELIMEPS+KWAGNPN+ V KAFGLRA+VQ VDLQVFACPR+TLKPLVP FPCFAKILVSLMEKPHVDFGLKLLGAD MSIPGLYRFVQ+LIKDQVANMYLWPK LEV IMDPAKA KRPVGIL VKVVRA+KLKKKD LGASDPYVKLKL+EDKLPSKKTTVK KNLNPEWNEEF++VVKDPESQ LEI V+DWEQVG HDKMG+NVVP+K L PDE KV+TLDL KNMDP D QNEK RGQ+V+E +YKPF E+P +TE+S+ V+KAP+GTP GGGLL +I+ E Q +EGK HTNP RLLFRGE ++TK VKKNRDPRW+EEF F L+EPPTNDRIHVEVVSTSSRM L+PKE LGYVDI LSDV+ NKRINERY+LIDSKNG IQIE+QWRTS+
Sbjct: 1 MGIVSTIMGFFGFGMGISIGLVIGYYLFIYFQPTDVPDPVIRPLVEQDSQTLQRLLPEIPLWVKNPDYDRVDWLNKFIETMWPYLDKAICKTVKNIAGPIIAEQIPKYKIDSVEFEALSLGSLPPTFQGMKVYLTEEKELIMEPSMKWAGNPNITVVAKAFGLRASVQVVDLQVFACPRITLKPLVPTFPCFAKILVSLMEKPHVDFGLKLLGADAMSIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKAMKRPVGILIVKVVRAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTTVKQKNLNPEWNEEFNLVVKDPESQALEINVFDWEQVGKHDKMGLNVVPLKQLTPDELKVMTLDLLKNMDPNDAQNEKSRGQIVLELMYKPFTDEEMPKETEDSNTVEKAPEGTPDGGGLLAVIVQETQDLEGKYHTNPQVRLLFRGEERRTKPVKKNRDPRWEEEFLFTLDEPPTNDRIHVEVVSTSSRMGLLHPKEALGYVDINLSDVVSNKRINERYNLIDSKNGRIQIELQWRTSA 539
BLAST of XM_017386985.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8AGR3 ((synaptotagmin-2-like {ECO:0000313|RefSeq:XP_010266820.1}))
HSP 1 Score: 880.167 bits (2273), Expect = 0.000e+0
Identity = 415/538 (77.14%), Postives = 478/538 (88.85%), Query Frame = 0
Match: A0A1U8AGR3 ((synaptotagmin-2-like {ECO:0000313|RefSeq:XP_010266820.1}))
HSP 1 Score: 880.167 bits (2273), Expect = 0.000e+0
Identity = 415/538 (77.14%), Postives = 478/538 (88.85%), Query Frame = 0
Query: 1 MGIVTSVMGIFGFGLGITIGLVIGYYLFIYFQPTNVENPTVPSLDEKDSKALKMLIQELPVWIKYPDHDRVDWLNKFIETMWPYLDKAICKTVKTIVQPIIAEQIPKYKIDSVQFEVLSLGSLPPVLTGMKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTS 537
MG +++MG GFG+G +IGLVIGYYLFIYFQPT+V++P V L E+DSK L+ L+ E+P+W+K PD+DRVDWLNKFI MWPYLDKAICK K I +PIIAEQIPKYKIDSV+FE L+LGSLPP GMKVY T EKELIMEPS+KWAGNPNV VAIKAFG +ATVQ VDLQVFA PR+TLKPLVP+FPCFAKILVSLMEKPHVDFGLKL+GAD+MSIPGLYRFVQ+LIKDQVANMYLWPK LEV IMDP+KA KRPVGIL VKV+RA+KLKKKD LGASDPYVKLKL+EDKLPSKKTTVKHKNLNPEWNEEF++VVKDPE+Q LEI VYDWEQVG HD+MGMNV+P+KDL PDESKV+TLDL KNMDP DVQNEK RGQ+V+E YKPFK +IP D E+S+ V+KAP+GTPAGGGLLV+I+HE Q +EGK+HTNP R++FRGE +KTK VKKNRDPRW+EEFQFMLEEPPTND++HVEVVSTS+++ L+PKE LGY++I L+DV+ NKRINE+YHLIDSKNG IQIE+QWRTS
Sbjct: 1 MGFFSTIMGFCGFGMGTSIGLVIGYYLFIYFQPTDVKDPEVRPLVEQDSKTLQRLLPEIPLWVKNPDYDRVDWLNKFIANMWPYLDKAICKMAKNIAKPIIAEQIPKYKIDSVEFEALTLGSLPPTFQGMKVYITDEKELIMEPSVKWAGNPNVTVAIKAFGFKATVQVVDLQVFAAPRITLKPLVPSFPCFAKILVSLMEKPHVDFGLKLMGADIMSIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPSKAFKRPVGILHVKVLRAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTTVKHKNLNPEWNEEFNMVVKDPETQALEINVYDWEQVGKHDRMGMNVIPLKDLPPDESKVITLDLLKNMDPNDVQNEKSRGQIVMEVTYKPFKEDDIPKDIEDSNSVEKAPEGTPAGGGLLVVIVHEAQDVEGKHHTNPYVRIIFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDKLHVEVVSTSTKLGLLHPKENLGYININLTDVVNNKRINEKYHLIDSKNGKIQIELQWRTS 538
BLAST of XM_017386985.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J6XGZ9 ((Synaptotagmin-2 {ECO:0000313|EMBL:KAF5207932.1}))
HSP 1 Score: 880.167 bits (2273), Expect = 0.000e+0
Identity = 415/539 (76.99%), Postives = 474/539 (87.94%), Query Frame = 0
Match: A0A7J6XGZ9 ((Synaptotagmin-2 {ECO:0000313|EMBL:KAF5207932.1}))
HSP 1 Score: 880.167 bits (2273), Expect = 0.000e+0
Identity = 415/539 (76.99%), Postives = 474/539 (87.94%), Query Frame = 0
Query: 1 MGIVTSVMGIFGFGLGITIGLVIGYYLFIYFQPTNVENPTVPSLDEKDSKALKMLIQELPVWIKYPDHDRVDWLNKFIETMWPYLDKAICKTVKTIVQPIIAEQIPKYKIDSVQFEVLSLGSLPPVLTGMKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 538
MG +++ G+FGFG+GI+IGLV GYYLFIYFQPT+V++P + L E+DS+ L+ ++ E+P+W+K PD+DRVDWLNKFIE MWPYLDKAICKT K I +PIIAEQIPKYKIDSV+FE L+LGSLPP GMKVY T EKELIMEP LKWAGNPNV VA+KAFGL+ATVQ VDLQVFA PR+TLKPLVP+FPCFAKILVSLM+KPHVDFGLKLLGADVMSIPGLY F Q+LIKDQVANMYLWPK LEV IMDPAKA KRPVGIL VKVVRA+KLKKKD +GASDPY KLKL+EDKLPSKKTTVKHKNLNPEWNEEF+ VVKDP SQ LE VYDWEQVG HDKMGMNV+P+KDL P+E+KV+TLDL KNMDP DVQNEK RGQ+V+E YKPFK +IP D E+S+ V+KAP+GTP+ GGLLV+IIHE + +EGK+HTNP AR+LFRGE KKTK +KKNRDPRW+EEF FMLEEPPTNDR+HVEVVS SSRM L+PKETLGY+DI L+DV+ NKRINE+YHLIDSKNG IQIE+QWRT S
Sbjct: 1 MGFFSTIFGLFGFGMGISIGLVAGYYLFIYFQPTDVKDPAIRPLVEQDSQTLQRILPEIPLWVKNPDYDRVDWLNKFIELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFEALTLGSLPPTFQGMKVYVTDEKELIMEPCLKWAGNPNVTVAVKAFGLKATVQVVDLQVFAAPRITLKPLVPSFPCFAKILVSLMDKPHVDFGLKLLGADVMSIPGLYSFAQELIKDQVANMYLWPKTLEVVIMDPAKAQKRPVGILHVKVVRAVKLKKKDLMGASDPYAKLKLTEDKLPSKKTTVKHKNLNPEWNEEFNFVVKDPGSQALEFTVYDWEQVGKHDKMGMNVIPLKDLTPEETKVMTLDLLKNMDPNDVQNEKSRGQIVLEVTYKPFKEEDIPKDIEDSNTVEKAPEGTPSTGGLLVVIIHEAEDVEGKHHTNPYARILFRGEEKKTKHIKKNRDPRWEEEFTFMLEEPPTNDRMHVEVVSASSRMGILHPKETLGYIDINLADVVSNKRINEKYHLIDSKNGRIQIELQWRTGS 539
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5ACN6 | E-Value: 0.000e+0, PID: 79.22 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8528... [more] |
| A0A200RAU5 | E-Value: 0.000e+0, PID: 78.48 | (C2 calcium-dependent membrane targeting {ECO:0000... [more] |
| E0CQ92 | E-Value: 0.000e+0, PID: 79.22 | (Uncharacterized protein {ECO:0000313|EMBL:CBI1989... [more] |
| A0A2R6R3P0 | E-Value: 0.000e+0, PID: 78.11 | (Synaptotagmin-2 like {ECO:0000313|EMBL:PSS19856.1... [more] |
| A0A6I9TEJ3 | E-Value: 0.000e+0, PID: 77.51 | (synaptotagmin-2 {ECO:0000313|RefSeq:XP_011083467.... [more] |
| A0A6I9TFG6 | E-Value: 0.000e+0, PID: 77.51 | (synaptotagmin-2 {ECO:0000313|RefSeq:XP_011083585.... [more] |
| A0A5B6YHQ5 | E-Value: 0.000e+0, PID: 77.92 | (Putative synaptotagmin-2 {ECO:0000313|EMBL:MPA311... [more] |
| A0A7J7GUL2 | E-Value: 0.000e+0, PID: 78.48 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5943... [more] |
| A0A1U8AGR3 | E-Value: 0.000e+0, PID: 77.14 | (synaptotagmin-2-like {ECO:0000313|RefSeq:XP_01026... [more] |
| A0A7J6XGZ9 | E-Value: 0.000e+0, PID: 76.99 | (Synaptotagmin-2 {ECO:0000313|EMBL:KAF5207932.1})[more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |