XM_017386986.1

Resource Type: 
Polypeptide
Name: 
XM_017386986.1
Identifier: 
XM_017386986.1-protein
Sequence: 
MTAYIQVDWLNKFIETMWPYLDKAICKTVKTIVQPIIAEQIPKYKIDSVQ
FEVLSLGSLPPVLTGMKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLR
ATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGA
DVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQV
KVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEF
HVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDL
RKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTP
AGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDE
EFQFMLEEPPTNDRIHVEVVSTSSRMSLYPKETLGYVDIYLSDVIKNKRI
NERYHLIDSKNGMIQIEMQWRTSS
Sequence Length: 
474
Sequence Checksum: 
36641d1e22bb943d59114d9b49babd2d
View location in JBrowse: 
DCARv2_Chr3:8029658..8032519-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017386986.1, derives from mRNA, XM_017386986.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017386986.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017386986.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: E0CQ92 ((Uncharacterized protein {ECO:0000313|EMBL:CBI19897.3}))

HSP 1 Score: 805.438 bits (2079), Expect = 0.000e+0
Identity = 385/472 (81.57%), Postives = 426/472 (90.25%), Query Frame = 0
 
Query:    4 YIQVDWLNKFIETMWPYLDKAICKTVKTIVQPIIAEQIPKYKIDSVQFEVLSLGSLPPVLTGMKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 474
            Y +VDWLNKFIE MWPYLDKAICKT K I +PIIAEQIPKYKIDSV+FE L+LGSLPP   GMKVY T EKELIME S+KWAGNPN+ VA+KAFGLRATVQ VDLQVFA PR+TLKPLVP+FPCFA I VSLMEKPHVDFGLKLLGADVM+IPGLYR VQ+LIKDQVANMYLWPK LEV IMDPAKA K+PVGIL VKVVRA+KLKKKD +GASDPYVK+KLSEDKLPSKKTTVKHKNLNPEWNEEF++VVKDPESQ LE++VYDWEQVG HDKMGMNV+P+K+L PDE KVLTLDL KNMDP DVQNEK RGQ+V+EA+YKPFK +EIP D E+ + ++KAP+GTPAGGGLLVII+HE Q +EGK+HTNP  RLLFRGE +KTK VKKNRDPRW+EEFQFMLEEPPTNDRIHVEVVSTSSRM  L+PKETLGYVDI LSDV+ NKRINE+YHLIDSKNG IQIE+QWRTS+
Sbjct:   68 YDRVDWLNKFIENMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFEALTLGSLPPTFQGMKVYATDEKELIMELSMKWAGNPNITVAVKAFGLRATVQVVDLQVFAAPRITLKPLVPSFPCFANIFVSLMEKPHVDFGLKLLGADVMAIPGLYRLVQELIKDQVANMYLWPKTLEVPIMDPAKAMKKPVGILSVKVVRAMKLKKKDIMGASDPYVKMKLSEDKLPSKKTTVKHKNLNPEWNEEFNMVVKDPESQALEVIVYDWEQVGKHDKMGMNVIPLKELTPDEPKVLTLDLLKNMDPNDVQNEKSRGQIVLEALYKPFKDTEIPKDLEDPNAIEKAPEGTPAGGGLLVIIVHEAQEVEGKHHTNPYVRLLFRGEERKTKYVKKNRDPRWEEEFQFMLEEPPTNDRIHVEVVSTSSRMGLLHPKETLGYVDINLSDVVSNKRINEKYHLIDSKNGKIQIELQWRTST 539
[Close]
BLAST of XM_017386986.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A200RAU5 ((C2 calcium-dependent membrane targeting {ECO:0000313|EMBL:OVA19834.1}))

HSP 1 Score: 801.971 bits (2070), Expect = 0.000e+0
Identity = 382/472 (80.93%), Postives = 427/472 (90.47%), Query Frame = 0
 
Query:    4 YIQVDWLNKFIETMWPYLDKAICKTVKTIVQPIIAEQIPKYKIDSVQFEVLSLGSLPPVLTGMKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 474
            Y +VDWLNKFIE MWPYLDKAICKT K I +PIIAEQIPKYKI+SV+FE L+LGSLPP   GMKVY T EKELIMEP LKWAGNPNV VAIKAFGL+ATVQ VDLQVFA PR+TLKPLVP+FPCFAKILVSLMEKPHVDFG+KLLGAD MSIPGLYRFVQ+LIKDQVANMYLWPK LEV IMDPAKA+KRPVGIL VKV+RA KLKKKD +GASDPYVKLKL+EDKLPSKKTTVKHKNLNPEWNEEF++VVKDPESQ LE+ VYDWEQVG HDKMGMNV+P+KDL P+ESKV+TLDL KNMDP DVQNEK RGQ+VVE IYKPFK  ++P D E+S+ V+KAP+GTP+GGGLLV+I+HE Q +EGK+HTNP  R+LFRGE K+TK VKKNRDPRW+EEFQFMLEEPPT+DR+HVEV+STSSRM  L+PKETLGYV+I LSDV+ NKRINE+YHLIDSKNG IQIE+QWRTS+
Sbjct:   68 YDRVDWLNKFIELMWPYLDKAICKTAKNITKPIIAEQIPKYKIESVEFEALTLGSLPPTFQGMKVYVTDEKELIMEPCLKWAGNPNVTVAIKAFGLKATVQVVDLQVFAAPRITLKPLVPSFPCFAKILVSLMEKPHVDFGIKLLGADAMSIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKASKRPVGILNVKVLRATKLKKKDLMGASDPYVKLKLTEDKLPSKKTTVKHKNLNPEWNEEFNIVVKDPESQALELNVYDWEQVGKHDKMGMNVIPLKDLTPEESKVMTLDLLKNMDPNDVQNEKSRGQIVVEVIYKPFKEEDMPKDIEDSNTVEKAPEGTPSGGGLLVVIVHEAQDVEGKHHTNPYVRILFRGEEKRTKHVKKNRDPRWEEEFQFMLEEPPTSDRLHVEVISTSSRMGLLHPKETLGYVEINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTST 539
[Close]
BLAST of XM_017386986.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ACN6 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8528765.1}))

HSP 1 Score: 800.431 bits (2066), Expect = 0.000e+0
Identity = 381/472 (80.72%), Postives = 421/472 (89.19%), Query Frame = 0
 
Query:    4 YIQVDWLNKFIETMWPYLDKAICKTVKTIVQPIIAEQIPKYKIDSVQFEVLSLGSLPPVLTGMKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 474
            + ++DWLNKFIE MWPYLDKAICKT K+I QPIIAEQIPKYKIDSV+F+ L+LG LPP   GMKVY+T EKELIMEPS+KWAGNPN+ +A+KAFGLRATVQ VDLQV A PR+TLKPLVP+FPCFAKILVSLMEKPHVDFGLKLLGAD MSIPGLYRFVQ+LIKDQVANMYLWPK LEV IMDPAKA KRPVGIL VKV+RA+KLKKKD LGASDPYVKLKL+EDKLPSKKTTVKHKNLNPEWNEEFH+VVKDPESQ LE  VYDWEQVG HDKMG NV+P+KDL PDE KV+TLDL KNMDP DVQNEK RGQ+++E +Y+PF   EIP ++E+ + V KAP+GTP GGGLLVII+HE Q +EGK+HTNP  RLLFRGE K+TK VKKNRDPRW+EEFQFMLEEPPTNDRIHVEV+STSSRM  L+PKE LGYVDI LSDV+ NKRINERYHLIDSKNG IQIEMQWRTSS
Sbjct:   68 FDRIDWLNKFIEVMWPYLDKAICKTAKSIAQPIIAEQIPKYKIDSVEFDALTLGCLPPTFQGMKVYSTEEKELIMEPSVKWAGNPNITIAVKAFGLRATVQIVDLQVSASPRITLKPLVPSFPCFAKILVSLMEKPHVDFGLKLLGADAMSIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKAMKRPVGILNVKVLRAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTTVKHKNLNPEWNEEFHLVVKDPESQALEFHVYDWEQVGKHDKMGQNVIPLKDLTPDEPKVMTLDLLKNMDPNDVQNEKSRGQIMIEMMYRPFADDEIPKESEDPNAVDKAPEGTPDGGGLLVIIVHEAQDLEGKHHTNPHVRLLFRGEEKRTKNVKKNRDPRWEEEFQFMLEEPPTNDRIHVEVISTSSRMGLLHPKEALGYVDINLSDVVSNKRINERYHLIDSKNGRIQIEMQWRTSS 539
[Close]
BLAST of XM_017386986.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R3P0 ((Synaptotagmin-2 like {ECO:0000313|EMBL:PSS19856.1}))

HSP 1 Score: 800.431 bits (2066), Expect = 0.000e+0
Identity = 380/472 (80.51%), Postives = 425/472 (90.04%), Query Frame = 0
 
Query:    4 YIQVDWLNKFIETMWPYLDKAICKTVKTIVQPIIAEQIPKYKIDSVQFEVLSLGSLPPVLTGMKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 474
            Y +VDWLNKFIETMWPYLDKAICKTVKTI +PIIAEQIPKYKI+SV+FE L+LG LPP   GMKVY T EKELIMEPS+KWAGNPN+++A KAFGLRATVQ VDLQVFA PR+TLKPLVP+FPCFAKILVSLMEKPHVDFGLK+LGAD MSIPGLYRFVQ+LIKDQ+ANMYLWPK LEV IMDPAKA KRPVGIL VK+VRA+KLKKKD LGASDPYVKLKL+EDKLPSKKTTVKHKNLNPEWNEEF++VVKDP+SQ LE+ VYDWEQVG HDKMG+NVVP+++L PDE KV+TLDL KNMDP D QNEK RGQ+V+E IYKPFK  E+P DTE S+ V+KAP+GTP GGGLLV+I+HE Q +EGK+HTNP  RLLFRGE ++TK VKKNRDPRW+EEFQFM++EPPTNDRIHVEVVS SSRM  L+PKE LGYVDI LSDV+ NKRINERYHLIDSKNG +QIE+QWRTSS
Sbjct:   68 YDRVDWLNKFIETMWPYLDKAICKTVKTIAKPIIAEQIPKYKIESVEFEALTLGCLPPTFQGMKVYLTEEKELIMEPSMKWAGNPNIIIAAKAFGLRATVQVVDLQVFASPRITLKPLVPSFPCFAKILVSLMEKPHVDFGLKVLGADAMSIPGLYRFVQELIKDQIANMYLWPKTLEVPIMDPAKAMKRPVGILSVKIVRAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTTVKHKNLNPEWNEEFNLVVKDPQSQALEVNVYDWEQVGKHDKMGLNVVPLQELTPDEPKVVTLDLLKNMDPNDAQNEKSRGQIVLELIYKPFKDDEMPKDTEESNAVEKAPEGTPDGGGLLVVIVHEAQDLEGKHHTNPQVRLLFRGEERRTKPVKKNRDPRWEEEFQFMMDEPPTNDRIHVEVVSNSSRMGLLHPKEALGYVDINLSDVVSNKRINERYHLIDSKNGRVQIELQWRTSS 539
[Close]
BLAST of XM_017386986.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438J3D5 ((Synaptotagmin-2 {ECO:0000313|EMBL:RVX03426.1}))

HSP 1 Score: 795.808 bits (2054), Expect = 0.000e+0
Identity = 385/491 (78.41%), Postives = 426/491 (86.76%), Query Frame = 0
 
Query:    4 YIQVDWLNKFIETMWPYLDKAICKTVKTIVQPIIAEQIPKYKIDSVQFEVLSLGSLPPVL-------------------TGMKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 474
            Y +VDWLNKFIE MWPYLDKAICKT K I +PIIAEQIPKYKIDSV+FE L+LGSLPP                      GMKVY T EKELIME S+KWAGNPN+ VA+KAFGLRATVQ VDLQVFA PR+TLKPLVP+FPCFA I VSLMEKPHVDFGLKLLGADVM+IPGLYR VQ+LIKDQVANMYLWPK LEV IMDPAKA K+PVGIL VKVVRA+KLKKKD +GASDPYVK+KLSEDKLPSKKTTVKHKNLNPEWNEEF++VVKDPESQ LE++VYDWEQVG HDKMGMNV+P+K+L PDE KVLTLDL KNMDP DVQNEK RGQ+V+EA+YKPFK +EIP D E+ + ++KAP+GTPAGGGLLVII+HE Q +EGK+HTNP  RLLFRGE +KTK VKKNRDPRW+EEFQFMLEEPPTNDRIHVEVVSTSSRM  L+PKETLGYVDI LSDV+ NKRINE+YHLIDSKNG IQIE+QWRTS+
Sbjct:   88 YDRVDWLNKFIENMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFEALTLGSLPPTFQEKAKRSCSTKPFFSPSCKAGMKVYATDEKELIMELSMKWAGNPNITVAVKAFGLRATVQVVDLQVFAAPRITLKPLVPSFPCFANIFVSLMEKPHVDFGLKLLGADVMAIPGLYRLVQELIKDQVANMYLWPKTLEVPIMDPAKAMKKPVGILSVKVVRAMKLKKKDIMGASDPYVKMKLSEDKLPSKKTTVKHKNLNPEWNEEFNMVVKDPESQALEVIVYDWEQVGKHDKMGMNVIPLKELTPDEPKVLTLDLLKNMDPNDVQNEKSRGQIVLEALYKPFKDTEIPKDLEDPNAIEKAPEGTPAGGGLLVIIVHEAQEVEGKHHTNPYVRLLFRGEERKTKYVKKNRDPRWEEEFQFMLEEPPTNDRIHVEVVSTSSRMGLLHPKETLGYVDINLSDVVSNKRINEKYHLIDSKNGKIQIELQWRTST 578
[Close]
BLAST of XM_017386986.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TEJ3 ((synaptotagmin-2 {ECO:0000313|RefSeq:XP_011083467.1}))

HSP 1 Score: 794.653 bits (2051), Expect = 0.000e+0
Identity = 376/471 (79.83%), Postives = 418/471 (88.75%), Query Frame = 0
 
Query:    4 YIQVDWLNKFIETMWPYLDKAICKTVKTIVQPIIAEQIPKYKIDSVQFEVLSLGSLPPVLTGMKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMSLYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 474
            Y +VDWLNKFIE MWPYLDKAICK  K I +PIIAEQIPKYKIDSV+FE L+LG LPP   GMKVY T EKELIME  LKWA NPN+LVA+KAFGLRATVQ +DLQVFACPR+TLKPLVP+FPCFA I VSLMEKPHVDFG+KLLGAD MSIPG YR VQ++IKDQVANMYLWPK LEVQIMDPAKA K+PVGIL V VVRA+KL+KKD LGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEF  VVKDPE+Q LE+VVYDWEQVG+HDKMG+NV+P+KDL P+E K +TL+L KN++P DVQNEK RGQLVVE  YKPFK +E+P D E++D VQKAP+GTP GGGLLVII+HE Q +EGKNHTNPSAR+LFRGE +KTK VKKNRDPRW+EEFQFML+EPPTNDR+HVEV+STS R  L+ KETLGYVDIYLSDV+ NKRINERYHLIDSKNG IQIEMQWRT+S
Sbjct:   68 YDRVDWLNKFIEYMWPYLDKAICKMAKKIAEPIIAEQIPKYKIDSVEFETLTLGCLPPTFEGMKVYNTEEKELIMELGLKWAANPNILVAVKAFGLRATVQVLDLQVFACPRITLKPLVPSFPCFANIHVSLMEKPHVDFGVKLLGADAMSIPGAYRIVQEIIKDQVANMYLWPKRLEVQIMDPAKAMKKPVGILHVNVVRAMKLRKKDLLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFTFVVKDPEAQALELVVYDWEQVGSHDKMGLNVIPLKDLTPEEPKTITLELLKNLNPDDVQNEKSRGQLVVEVNYKPFKDNELPADVEDADSVQKAPEGTPEGGGLLVIIVHEAQDLEGKNHTNPSARILFRGEERKTKVVKKNRDPRWEEEFQFMLDEPPTNDRVHVEVLSTSKRSLLHAKETLGYVDIYLSDVVSNKRINERYHLIDSKNGRIQIEMQWRTAS 538
[Close]
BLAST of XM_017386986.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TFG6 ((synaptotagmin-2 {ECO:0000313|RefSeq:XP_011083585.1}))

HSP 1 Score: 794.267 bits (2050), Expect = 0.000e+0
Identity = 376/471 (79.83%), Postives = 418/471 (88.75%), Query Frame = 0
 
Query:    4 YIQVDWLNKFIETMWPYLDKAICKTVKTIVQPIIAEQIPKYKIDSVQFEVLSLGSLPPVLTGMKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMSLYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 474
            Y +VDWLNKFIE MWPYLDKAICK  K I +PIIAEQIPKYKIDSV+FE L+LG LPP   GMKVY T EKELIME  LKWA NPN+LVA+KAFGLRATVQ +DLQVFACPR+TLKPLVP+FPCFA I VSLMEKPHVDFG+KLLGAD MSIPG YR VQ++IKDQVANMYLWPK LEVQIMDPAKA K+PVGIL V VVRA+KL+KKD LGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEF  VVKDPE+Q LE+VVYDWEQVG+HDKMG+NV+P+KDL P+E K +TL+L KN++P DVQNEK RGQLVVE  YKPFK +E+P D E++D VQKAP+GTP GGGLLVII+HE Q +EGKNHTNPSAR+LFRGE +KTK VKKNRDPRW+EEFQFML+EPPTNDR+HVEV+STS R  L+ KETLGYVDIYLSDV+ NKRINERYHLIDSKNG IQIEMQWRT+S
Sbjct:   68 YDRVDWLNKFIEYMWPYLDKAICKMAKKIAEPIIAEQIPKYKIDSVEFETLTLGCLPPTFEGMKVYNTEEKELIMELGLKWAANPNILVAVKAFGLRATVQVLDLQVFACPRITLKPLVPSFPCFANIHVSLMEKPHVDFGVKLLGADAMSIPGAYRIVQEIIKDQVANMYLWPKRLEVQIMDPAKAMKKPVGILHVNVVRAMKLRKKDLLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFTFVVKDPEAQALELVVYDWEQVGSHDKMGLNVIPLKDLTPEEPKTITLELLKNLNPDDVQNEKSRGQLVVEINYKPFKDNELPADVEDADSVQKAPEGTPEGGGLLVIIVHEAQDLEGKNHTNPSARILFRGEERKTKVVKKNRDPRWEEEFQFMLDEPPTNDRVHVEVLSTSKRSLLHAKETLGYVDIYLSDVVSNKRINERYHLIDSKNGRIQIEMQWRTAS 538
[Close]
BLAST of XM_017386986.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9R8B6 ((Calcium lipid binding protein, putative {ECO:0000313|EMBL:EEF52746.1}))

HSP 1 Score: 792.341 bits (2045), Expect = 0.000e+0
Identity = 377/472 (79.87%), Postives = 422/472 (89.41%), Query Frame = 0
 
Query:    4 YIQVDWLNKFIETMWPYLDKAICKTVKTIVQPIIAEQIPKYKIDSVQFEVLSLGSLPPVLTGMKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 474
            Y +VDWLN+FI TMWPYLD AICKTVKTI +PIIAEQIPKYKIDSV+F+ L+LGSLPP   G+KVY T EKELI+EPSLKWAGNPN+++A KAFGLRATVQ VDLQVFA PR+TLKPLVP FPCFA I VSLMEKPHVDFGLKLLGADVMSIPGLYRFVQ+LIKDQVANMYLWPKAL+V I+DPAKAAKRPVGIL VKVVRA+KLKKKDFLGASDPYVKLKL+EDKLPSKKT +KHKNLNPEWNEEF++VVKDPESQ LE++VYDWEQVG H+KMGMNVVP+K+L PDE KV+TLDL KNMDP D QNEK RGQLV+E IYKPFK  E+P D  +S++V KAP+GTPAGGGLLV+I+HE Q IEGK+HTNP  RLLFRGE K+TK VKKNRDPRW+EEFQF LEEPPTNDRI+VEV+S SSRM  L+PKE LGYV I L+DV+ NKR NE+YHLIDS+NG IQIE+QWRTSS
Sbjct:   73 YDRVDWLNRFIATMWPYLDTAICKTVKTIAKPIIAEQIPKYKIDSVEFQELTLGSLPPTFQGIKVYITDEKELIIEPSLKWAGNPNIIIAAKAFGLRATVQVVDLQVFAAPRITLKPLVPTFPCFASIFVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQELIKDQVANMYLWPKALQVPILDPAKAAKRPVGILSVKVVRAMKLKKKDFLGASDPYVKLKLTEDKLPSKKTAIKHKNLNPEWNEEFNIVVKDPESQALEVIVYDWEQVGKHEKMGMNVVPLKELTPDEPKVMTLDLLKNMDPNDAQNEKSRGQLVLELIYKPFKEDEMPNDVADSNDVGKAPEGTPAGGGLLVVIVHEAQDIEGKHHTNPYVRLLFRGEEKRTKLVKKNRDPRWEEEFQFTLEEPPTNDRIYVEVLSASSRMGILHPKENLGYVTINLADVVNNKRTNEKYHLIDSRNGRIQIELQWRTSS 544
[Close]
BLAST of XM_017386986.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N0ZY31 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Kaladp0053s0149.1.v1.1}))

HSP 1 Score: 791.956 bits (2044), Expect = 0.000e+0
Identity = 378/471 (80.25%), Postives = 418/471 (88.75%), Query Frame = 0
 
Query:    4 YIQVDWLNKFIETMWPYLDKAICKTVKTIVQPIIAEQIPKYKIDSVQFEVLSLGSLPPVLTGMKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTS 473
            Y +VDWLNKFIE MWPYLDKAICKTVKTI +PIIAEQIPKYKIDSV+FE L+LGSLPP   GMKVY T EKELIMEP LKWAGNPN+LVAIKAFGL+ATVQ VDLQVFA PR+TLKPLVP FPCFAKILVSLMEKPHVDFGLKL GAD MSIPGLYRFVQ+ IK QVANMYLWPK LEV I+D +KA K+PVGILQVKVVRA+KLKKKD +GASDPYVKLKL+E+KL +KKTTVKHKNLNPEWNEEF +VVKDPESQ LE +VYDWEQVG HDKMGMNV+P+K+L PDE+K++TLDL KNMDP D QNEK RGQLV+E  YKPFKG E P + E+ + V+KAP+GTPAGGGLLV+I+HE Q +EGK HTNP  RLLFRGE +KTK VKKNRDPRW+EEFQFMLEEPP NDR+HVEV+S +SRM  L+PKETLGYVDIYLSDVI NKRINERYHLIDSKNG IQIE+QWRTS
Sbjct:   68 YDRVDWLNKFIENMWPYLDKAICKTVKTIAKPIIAEQIPKYKIDSVEFEQLTLGSLPPTFQGMKVYITEEKELIMEPCLKWAGNPNILVAIKAFGLKATVQVVDLQVFASPRITLKPLVPTFPCFAKILVSLMEKPHVDFGLKLFGADAMSIPGLYRFVQETIKQQVANMYLWPKTLEVPILDLSKAFKKPVGILQVKVVRAMKLKKKDLMGASDPYVKLKLTEEKLSTKKTTVKHKNLNPEWNEEFQMVVKDPESQALEFIVYDWEQVGKHDKMGMNVIPLKELTPDETKIMTLDLLKNMDPNDAQNEKSRGQLVLELTYKPFKGDEAPAELEDPNVVEKAPEGTPAGGGLLVVIVHEAQDVEGKYHTNPYVRLLFRGEERKTKLVKKNRDPRWEEEFQFMLEEPPVNDRLHVEVISGASRMGLLHPKETLGYVDIYLSDVISNKRINERYHLIDSKNGRIQIELQWRTS 538
[Close]
BLAST of XM_017386986.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J6XGZ9 ((Synaptotagmin-2 {ECO:0000313|EMBL:KAF5207932.1}))

HSP 1 Score: 790.415 bits (2040), Expect = 0.000e+0
Identity = 377/472 (79.87%), Postives = 418/472 (88.56%), Query Frame = 0
 
Query:    4 YIQVDWLNKFIETMWPYLDKAICKTVKTIVQPIIAEQIPKYKIDSVQFEVLSLGSLPPVLTGMKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 474
            Y +VDWLNKFIE MWPYLDKAICKT K I +PIIAEQIPKYKIDSV+FE L+LGSLPP   GMKVY T EKELIMEP LKWAGNPNV VA+KAFGL+ATVQ VDLQVFA PR+TLKPLVP+FPCFAKILVSLM+KPHVDFGLKLLGADVMSIPGLY F Q+LIKDQVANMYLWPK LEV IMDPAKA KRPVGIL VKVVRA+KLKKKD +GASDPY KLKL+EDKLPSKKTTVKHKNLNPEWNEEF+ VVKDP SQ LE  VYDWEQVG HDKMGMNV+P+KDL P+E+KV+TLDL KNMDP DVQNEK RGQ+V+E  YKPFK  +IP D E+S+ V+KAP+GTP+ GGLLV+IIHE + +EGK+HTNP AR+LFRGE KKTK +KKNRDPRW+EEF FMLEEPPTNDR+HVEVVS SSRM  L+PKETLGY+DI L+DV+ NKRINE+YHLIDSKNG IQIE+QWRT S
Sbjct:   68 YDRVDWLNKFIELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFEALTLGSLPPTFQGMKVYVTDEKELIMEPCLKWAGNPNVTVAVKAFGLKATVQVVDLQVFAAPRITLKPLVPSFPCFAKILVSLMDKPHVDFGLKLLGADVMSIPGLYSFAQELIKDQVANMYLWPKTLEVVIMDPAKAQKRPVGILHVKVVRAVKLKKKDLMGASDPYAKLKLTEDKLPSKKTTVKHKNLNPEWNEEFNFVVKDPGSQALEFTVYDWEQVGKHDKMGMNVIPLKDLTPEETKVMTLDLLKNMDPNDVQNEKSRGQIVLEVTYKPFKEEDIPKDIEDSNTVEKAPEGTPSTGGLLVVIIHEAEDVEGKHHTNPYARILFRGEEKKTKHIKKNRDPRWEEEFTFMLEEPPTNDRMHVEVVSASSRMGILHPKETLGYIDINLADVVSNKRINEKYHLIDSKNGRIQIELQWRTGS 539
Match NameStatsDescription
E0CQ92E-Value: 0.000e+0, PID: 81.57(Uncharacterized protein {ECO:0000313|EMBL:CBI1989... [more]
A0A200RAU5E-Value: 0.000e+0, PID: 80.93(C2 calcium-dependent membrane targeting {ECO:0000... [more]
A0A5J5ACN6E-Value: 0.000e+0, PID: 80.72(Uncharacterized protein {ECO:0000313|EMBL:KAA8528... [more]
A0A2R6R3P0E-Value: 0.000e+0, PID: 80.51(Synaptotagmin-2 like {ECO:0000313|EMBL:PSS19856.1... [more]
A0A438J3D5E-Value: 0.000e+0, PID: 78.41(Synaptotagmin-2 {ECO:0000313|EMBL:RVX03426.1})[more]
A0A6I9TEJ3E-Value: 0.000e+0, PID: 79.83(synaptotagmin-2 {ECO:0000313|RefSeq:XP_011083467.... [more]
A0A6I9TFG6E-Value: 0.000e+0, PID: 79.83(synaptotagmin-2 {ECO:0000313|RefSeq:XP_011083585.... [more]
B9R8B6E-Value: 0.000e+0, PID: 79.87(Calcium lipid binding protein, putative {ECO:0000... [more]
A0A7N0ZY31E-Value: 0.000e+0, PID: 80.25(Uncharacterized protein {ECO:0000313|EnsemblPlant... [more]
A0A7J6XGZ9E-Value: 0.000e+0, PID: 79.87(Synaptotagmin-2 {ECO:0000313|EMBL:KAF5207932.1})[more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.