Resource Type:
Polypeptide
Name:
XM_017381855.1
Identifier:
XM_017381855.1-protein
Sequence:
MRKKRKGTELLCPNRKDVLGSTSDDSGSARSNLRCHYSLEDYDRLKKRCK
EGVESVDETVGSCRVRLAGIAATAPACATTSLSGLSGRGIKRKIGCIDAA
TQMGRKNKIEDDFISGATIGKGKFGSVWLCRSKVSEEDFACKTLHKGEET
VHREVEIMQHLSGHPGVVTLKAVYEDPKSFHLVMELCSGGRLIDQMTKQG
RYSEQQAANIFKDLMLVIKYCHEMGVVHRDIKPENILLTNSDQSLNGIAG
SPAYVAPEVLLGNYSEKVDIWSAGVLLYALLAGALPFKGNSLEDVFEAIK
TVKLDFQAGIWESISKPLRDLLERILTRDAAARITADEILAHPWILFYTE
RTLRTLSFKSKTKNQPGSHHLPVSFIPNSSRKIRDSNFVDDDSSRNSSSE
SLSQEKDEQDDCGFVDALAVAISHVTISEPKRSRLCGPTSPIREQCSSNV
TSNSLCKAF
Sequence Length:
459
Sequence Checksum:
15c5fd98c7d6bef97c509d4ec745e5c2
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017381855.1, derives from mRNA, XM_017381855.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017381855.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017381855.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103XBY0 ((Protein kinase, ATP binding site-containing protein {ECO:0000313|EMBL:KVH87900.1}))
HSP 1 Score: 649.432 bits (1674), Expect = 0.000e+0
Identity = 334/481 (69.44%), Postives = 387/481 (80.46%), Query Frame = 0
Match: A0A103XBY0 ((Protein kinase, ATP binding site-containing protein {ECO:0000313|EMBL:KVH87900.1}))
HSP 1 Score: 649.432 bits (1674), Expect = 0.000e+0
Identity = 334/481 (69.44%), Postives = 387/481 (80.46%), Query Frame = 0
Query: 1 MRKKRKGTELLCPNRKDVLGSTSDDSGSARSNLRCHYSLEDYDRLKKRC--KEGVESVDETVGSCRVRLAGIAATAPACATTSLSGLSGRGIKRKIGCIDAATQMGRKNKIEDDFISGATIGKGKFGSVWLCRSKVSEEDFACKTLHKGEETVHREVEIMQHLSGHPGVVTLKAVYEDPKSFHLVMELCSGGRLIDQMTKQGRYSEQQAANIFKDLMLVIKYCHEMGVVHRDIKPENILLTNS----------------DQSLNGIAGSPAYVAPEVLLGNYSEKVDIWSAGVLLYALLAGALPFKGNSLEDVFEAIKTVKLDFQAGIWESISKPLRDLLERILTRDAAARITADEILAHPWILFYTERTLRTLSFKSKTKNQPG---SHHLPVSFIPNSSRK--IRDSNFVDDDSSRNSSSESLSQEKDEQDDCGFVDALAVAISHVTISEPKRSRLCGPTSPIREQCSSNVTSNSLCKA 458
MRKKRKG++L C + K + ++ DS S SNL+CHYSLEDY RLKKRC ++ V + GSC+ RLAGIAATAP CATTSL LSGRGIKRKIGCID ATQMGRKNKI +D+I GATIGKGKFGSVWLCR +VS +FACKTL KGEETVHREVEIMQHLSGH GVVTLKAVYED +SFHLVMELCSGGRLIDQMTK+GRYSEQ+AANIFK+LM+VIKYCH+MGVVHRD+KPENILLT S QSL G+AGSP YVAPEVL GNYSEKVD+WSAGVLL+ALL G LPF+G+SLEDVFEAIKTV+L+F G+WES+SKP RDLLERILTR+A +RITA+E+L+HPWILFYTERTLR+LSFKSK+K+Q G S P + + +RK + + + S ++S S S E+++ D G VDALAVAIS+V ISEPKRSRLC PTSPIREQCSSNVT+N+LCKA
Sbjct: 1 MRKKRKGSDLFCTDNKKEIVESTGDSESLISNLKCHYSLEDYVRLKKRCCKEDVVCGGADPNGSCKNRLAGIAATAPPCATTSLV-LSGRGIKRKIGCIDVATQMGRKNKIAEDYIKGATIGKGKFGSVWLCRCRVSGVEFACKTLVKGEETVHREVEIMQHLSGHLGVVTLKAVYEDLESFHLVMELCSGGRLIDQMTKEGRYSEQRAANIFKELMMVIKYCHDMGVVHRDVKPENILLTASGKIKLADFGLAVRITNGQSLAGLAGSPPYVAPEVLTGNYSEKVDVWSAGVLLHALLVGVLPFQGDSLEDVFEAIKTVELNFHTGVWESVSKPARDLLERILTRNADSRITAEEVLSHPWILFYTERTLRSLSFKSKSKHQVGPSSSQTAPTTNVVELTRKKTLDGGSIIKYSSPSSTSRSSGSDEQEDDDSGGLVDALAVAISNVRISEPKRSRLCVPTSPIREQCSSNVTTNNLCKA 480
BLAST of XM_017381855.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R2V9 ((Serine/threonine-protein kinase {ECO:0000313|EMBL:PSS19584.1}))
HSP 1 Score: 647.121 bits (1668), Expect = 0.000e+0
Identity = 332/487 (68.17%), Postives = 377/487 (77.41%), Query Frame = 0
Match: A0A2R6R2V9 ((Serine/threonine-protein kinase {ECO:0000313|EMBL:PSS19584.1}))
HSP 1 Score: 647.121 bits (1668), Expect = 0.000e+0
Identity = 332/487 (68.17%), Postives = 377/487 (77.41%), Query Frame = 0
Query: 1 MRKKRKGTELLCPNRKDVLGSTSDDSGSARSNLRCHYSLEDYDRLKKRCKEGVESVDETVGSCRVRLAGIAATAPACATTSLSGLSGRGIKRKIGCIDAATQMGRKNKIEDDFISGATIGKGKFGSVWLCRSKVSEEDFACKTLHKGEETVHREVEIMQHLSGHPGVVTLKAVYEDPKSFHLVMELCSGGRLIDQMTKQGRYSEQQAANIFKDLMLVIKYCHEMGVVHRDIKPENILLTNS----------------DQSLNGIAGSPAYVAPEVLLGNYSEKVDIWSAGVLLYALLAGALPFKGNSLEDVFEAIKTVKLDFQAGIWESISKPLRDLLERILTRDAAARITADEILAHPWILFYTERTLRTLSFKSKTKNQPGSHHLPVSFIPNSSRKIRDSNFVDDDSSRN-----SSSESLSQ-------EKDEQDDCGFVDALAVAISHVTISEPKRSRLCGPTSPIREQCSSNVTSNSLCKAF 459
MR+KRKG+E+LC +++L ST+ DS S+ SNL+ HYSLEDY RLKKRCKE ++ D T+GSC+ RL GIAATAP C T+SL GRG+KRKIGCID ATQMGRKNKIED + GA IGKGKFGSVWLCRS+V+ +FACKTL K EETVH EVEIMQHLSGHPGVV LK+VYED + FHLVMELCSGGRLIDQM K+ RYSE +AANIFK+LMLVIKYCHEMGVVHRDIKPENILLT S Q L G+AGSP YVAPEVLLGNY EKVDIWSAGVLL+ALL G+LPF+G SLE+VFEAIK V LDF GIWESISKP RDL+ERIL+RD A RITADE+L+HPWILFYTERTLRTLS K K K SH P + ++R ++ SR S SESL + +++EQDDCG VD LAVAISHVTISEPKRSRLCGPTSPI EQCSSN+T+N+LCKAF
Sbjct: 1 MRRKRKGSEILCLE-EEILESTNRDSRSSLSNLKGHYSLEDYARLKKRCKED-DAGDNTIGSCKSRLVGIAATAPPCGTSSLVS-PGRGLKRKIGCIDVATQMGRKNKIEDYYDKGAAIGKGKFGSVWLCRSRVTGVEFACKTLCKKEETVHHEVEIMQHLSGHPGVVMLKSVYEDSECFHLVMELCSGGRLIDQMVKEVRYSEHRAANIFKELMLVIKYCHEMGVVHRDIKPENILLTTSGKIKLADFGLAMRVANGQRLTGLAGSPGYVAPEVLLGNYCEKVDIWSAGVLLHALLTGSLPFQGGSLEEVFEAIKNVNLDFHIGIWESISKPARDLMERILSRDVATRITADEVLSHPWILFYTERTLRTLSIKPKLK----SHTAPSQLVTTTAR-------LESKESRRARASFSDSESLEKLPGRSGCKREEQDDCGLVDVLAVAISHVTISEPKRSRLCGPTSPISEQCSSNMTANNLCKAF 473
BLAST of XM_017381855.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YS20 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 645.195 bits (1663), Expect = 0.000e+0
Identity = 332/479 (69.31%), Postives = 383/479 (79.96%), Query Frame = 0
Match: A0A5B6YS20 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 645.195 bits (1663), Expect = 0.000e+0
Identity = 332/479 (69.31%), Postives = 383/479 (79.96%), Query Frame = 0
Query: 1 MRKKRKGTELLCPNRKDVLGSTSDDSGSARSNLRCHYSLEDYDRLKKRCKEGVESVDETVGSCRVRLAGIAATAPACATTSLSGLSGRGIKRKIGCIDAATQMGRKNKIEDDFISGATIGKGKFGSVWLCRSKVSEEDFACKTLHKGEETVHREVEIMQHLSGHPGVVTLKAVYEDPKSFHLVMELCSGGRLIDQMTKQGRYSEQQAANIFKDLMLVIKYCHEMGVVHRDIKPENILLTNS----------------DQSLNGIAGSPAYVAPEVLLGNYSEKVDIWSAGVLLYALLAGALPFKGNSLEDVFEAIKTVKLDFQAGIWESISKPLRDLLERILTRDAAARITADEILAHPWILFYTERTLRTLSFKSKTKNQPGSHHLPVSFIPNSSRKIRD----SNFVDDDSSRNSSSESLSQEKDEQDDCGFVDALAVAISHVTISEPKRSRLCGPTSPIREQCSSNVTSNSLCKAF 459
MRKKRKG+E+LCPN+K++L T D S S+ + L+ HYSLED RL+KR KE V E V SC++RL GIAATAP C T+SL L GRG+KRKIGCIDAATQMGRKNKIEDD++SGATIGKGKFGSVWLCRS+V+ +FACKTL KGEETVHREVEIMQHLSGHPGVVTL+AVYED + FHLVMELCSGGRLIDQM K G+YSE +AAN+ K+LMLVIKYCH+MGVVHRD+KPENILLT S Q L G+AGSPAYVAPE+LLGNYSEKVDIWSAGVLL+ALL G LPF+G+SLE VFEAIK VKLDF GIWESISKP RDL++R+LTR+ A RIT DE+L+HPWILFYTERTL+TLS KSK+KNQ + V+ +PN+ K+ + S + S SSS S E EQDDCG VD LAVAIS+V ISEPK+SRLCGPTSPIREQCSSN+ +N+LCKAF
Sbjct: 1 MRKKRKGSEILCPNQKEILQPTLD-SQSSFTKLKSHYSLEDCARLRKRYKEDVVG-GEPVESCKIRLNGIAATAPPCGTSSLVFL-GRGLKRKIGCIDAATQMGRKNKIEDDYVSGATIGKGKFGSVWLCRSRVTGVEFACKTLGKGEETVHREVEIMQHLSGHPGVVTLEAVYEDSECFHLVMELCSGGRLIDQMGKVGQYSEHRAANLLKELMLVIKYCHDMGVVHRDVKPENILLTTSGKIKLADFGLAMRVSNGQKLVGLAGSPAYVAPEILLGNYSEKVDIWSAGVLLHALLVGVLPFQGDSLEAVFEAIKNVKLDFHTGIWESISKPARDLIQRMLTREIATRITVDEVLSHPWILFYTERTLKTLSIKSKSKNQSEAPSQLVA-VPNAIEKVGNRIVGSGTPSEGSGPVSSSGSSVCESKEQDDCGLVDVLAVAISNVRISEPKKSRLCGPTSPIREQCSSNLKANNLCKAF 475
BLAST of XM_017381855.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LLG0 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7139144.1}))
HSP 1 Score: 640.958 bits (1652), Expect = 0.000e+0
Identity = 334/475 (70.32%), Postives = 378/475 (79.58%), Query Frame = 0
Match: A0A834LLG0 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7139144.1}))
HSP 1 Score: 640.958 bits (1652), Expect = 0.000e+0
Identity = 334/475 (70.32%), Postives = 378/475 (79.58%), Query Frame = 0
Query: 1 MRKKRKGTELLCPNRKDVLGSTSDDSGSARSNLRCHYSLEDYDRLKKRCKEGVESVDETVGSCRVRLAGIAATAPACATTSLSGLSGRGIKRKIGCIDAATQMGRKNKIEDDFISGATIGKGKFGSVWLCRSKVSEEDFACKTLHKGEETVHREVEIMQHLSGHPGVVTLKAVYEDPKSFHLVMELCSGGRLIDQMTKQGRYSEQQAANIFKDLMLVIKYCHEMGVVHRDIKPENILLTNS----------------DQSLNGIAGSPAYVAPEVLLGNYSEKVDIWSAGVLLYALLAGALPFKGNSLEDVFEAIKTVKLDFQAGIWESISKPLRDLLERILTRDAAARITADEILAHPWILFYTERTLRTLSFKSKTKNQPGSHHLPVSFIPNSSRKIRDSNFVDDDSSRNSSSESLSQEKDEQDDCGFVDALAVAISHVTISEPKRSRLCGPTSPIREQCSSNVTSNSLCKAF 459
MRKKRKG+ELL N+++VL STS S+ S LR HYSLEDY RLKKRCKE V E VGSC+ RL GIAATAP C T+SL L GRG+KRKIGCID ATQMGRKNKIE+D+++GATIG+GKFGSVWLCRS+V+ +FACKTL KGEETVHREVEIMQHLSGHPGVVTL+AVYED + FHLVMELCSGGRLIDQM+K+ RYSE +AANIFK+LMLVIKYCHEMGVVHRD+KPENILLT S Q L G+AGSPAYVAPEVL GNYSEKVDIWSAG+LL+ALLAG LPF+G SL+ VFE IK VKLDF GIWE+ISKP RDL+ERILTRD AARITADE+L HPWILFYTERTLR+LS KSK+K+Q P +SR +D + SSS+ +DDCG VDALAVAISHVTISEPKRSRLCGP+SPIREQCSSN+++N+LCKAF
Sbjct: 1 MRKKRKGSELLHENKEEVLESTSR---SSLSKLRTHYSLEDYARLKKRCKEDVVG-SEHVGSCQSRLVGIAATAPPCGTSSLV-LPGRGLKRKIGCIDVATQMGRKNKIEEDYVAGATIGRGKFGSVWLCRSRVTGVEFACKTLCKGEETVHREVEIMQHLSGHPGVVTLEAVYEDTECFHLVMELCSGGRLIDQMSKEVRYSEHRAANIFKELMLVIKYCHEMGVVHRDVKPENILLTTSGKIKLADFGLAMRVANGQRLTGVAGSPAYVAPEVLSGNYSEKVDIWSAGILLHALLAGVLPFQGGSLDAVFEQIKNVKLDFHTGIWEAISKPARDLIERILTRDVAARITADEVLTHPWILFYTERTLRSLSIKSKSKSQSAP---PSQLSSPTSRPEQDESRATHG---GSSSKGAILTSSTEDDCGLVDALAVAISHVTISEPKRSRLCGPSSPIREQCSSNLSTNNLCKAF 464
BLAST of XM_017381855.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6JMS6 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 638.647 bits (1646), Expect = 0.000e+0
Identity = 336/485 (69.28%), Postives = 384/485 (79.18%), Query Frame = 0
Match: A0A2J6JMS6 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 638.647 bits (1646), Expect = 0.000e+0
Identity = 336/485 (69.28%), Postives = 384/485 (79.18%), Query Frame = 0
Query: 1 MRKKRKGTELLCP-NRKDVLGSTSDDSGSARSNLRCHYSLEDYDRLKKRC-KEGVE-SVDETVGSCRVRLAGIAATAPACATTSLSGLSGRGIKRKIGCIDAATQMGRKNKIEDDFISGATIGKGKFGSVWLCRSKVSEEDFACKTLHKGEETVHREVEIMQHLSGHPGVVTLKAVYEDPKSFHLVMELCSGGRLIDQMTKQGRYSEQQAANIFKDLMLVIKYCHEMGVVHRDIKPENILLTNS----------------DQSLNGIAGSPAYVAPEVLLGNYSEKVDIWSAGVLLYALLAGALPFKGNSLEDVFEAIKTVKLDFQAGIWESISKPLRDLLERILTRDAAARITADEILAHPWILFYTERTLRTLSFKSKTKNQPGSHHLPVSFIP--NSSRKIRDSNFVDDDSSRNSSSESL------SQEKDEQDDCGFVDALAVAISHVTISEPKRSRLCGPTSPIREQCSSNVTSNSLCKA 458
MRKKRKG++LL NRK+++ ST D S S SNL+CHYSLEDY RLKKRC KE V ++ GSC+ RLAGIAATAP CAT+SL LSGRGIKRKIGCID ATQMGRKNKI +D+I GATIGKGKFGSVWLCR +VS +FACKTL KGEETVHREVEIMQHLSGHPGVVTLKAVYED +SFHLVMELCSGGRLIDQMTK+GRYSEQ+AANIFK+LM+VIKYCH+MGVVHRD+KPENILLT S QSL G+AGSPAYVAPEV+ GNYSEKVD+WSAG+LL+ALL G LPF+G+SLEDVFEAIKT +L+F GIW+S+SKP RDLLERILTR+A +RI+A+E+L+HPWI+FYTER LR+LSFKSK+K + S + SSRK +DD ++SS L S +DE DD G VDAL VAISHV ISEPKRSRLC PTSPIREQCSS T+N LCKA
Sbjct: 1 MRKKRKGSDLLWSDNRKEIVESTGD-SESLISNLKCHYSLEDYVRLKKRCCKEDVICGGGDSNGSCKNRLAGIAATAPPCATSSLV-LSGRGIKRKIGCIDVATQMGRKNKIAEDYIKGATIGKGKFGSVWLCRCRVSGVEFACKTLVKGEETVHREVEIMQHLSGHPGVVTLKAVYEDSESFHLVMELCSGGRLIDQMTKEGRYSEQRAANIFKELMMVIKYCHDMGVVHRDVKPENILLTASGKIKLADFGLAMRITNGQSLAGLAGSPAYVAPEVITGNYSEKVDVWSAGILLHALLVGVLPFQGDSLEDVFEAIKTRELNFHTGIWDSVSKPARDLLERILTRNADSRISAEEVLSHPWIIFYTERNLRSLSFKSKSKQHVITATASASTVVELESSRK---KKMMDDGMKKSSSPLILVTTSRSSVSEDEDDDSGLVDALTVAISHVRISEPKRSRLCVPTSPIREQCSST-TNNHLCKA 479
BLAST of XM_017381855.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6PCQ1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 638.262 bits (1645), Expect = 0.000e+0
Identity = 338/481 (70.27%), Postives = 391/481 (81.29%), Query Frame = 0
Match: A0A5N6PCQ1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 638.262 bits (1645), Expect = 0.000e+0
Identity = 338/481 (70.27%), Postives = 391/481 (81.29%), Query Frame = 0
Query: 1 MRKKRKGTELLCP--NRKDVLGSTSDDSGSARSNLRCHYSLEDYDRLKKRC--KEGVESVDETVGSCRVRLAGIAATAPACATTSLSGLSGRGIKRKIGCIDAATQMGRKNKIEDDFISGATIGKGKFGSVWLCRSKVSEEDFACKTLHKGEETVHREVEIMQHLSGHPGVVTLKAVYEDPKSFHLVMELCSGGRLIDQMTKQGRYSEQQAANIFKDLMLVIKYCHEMGVVHRDIKPENILLTNS----------------DQSLNGIAGSPAYVAPEVLLGNYSEKVDIWSAGVLLYALLAGALPFKGNSLEDVFEAIKTVKLDFQAGIWESISKPLRDLLERILTRDAAARITADEILAHPWILFYTERTLRTLSFKSKTKNQPG--SHHLPVSFIPNSSRKIRDSNFVDDDSSRNSSSESLSQEK-DEQDDCGFVDALAVAISHVTISEPKRSRLCGPTSPIREQCSSNVTSNSLCKA 458
MRKKRKG++L+ N+K+++ ST D S S SNL+CHYSLEDY RLKKRC ++ V D+ GSC+ RLAGIAATAP CAT+SL LSGRGIKRKIGCID ATQMGRKNKI +D+I GATIGKGKFGSVWLCR +V+ +FACKTL KGEETVHREVEIMQHLSGHPGVVTLKAVYED +SFHLVMELCSGGRLIDQMT +GRYSEQ+AANIFK+LM+VIKYCHEMGVVHRD+KPENILLT S QSL G+AGSPAYVAPEVL GNYSEKVD+WSAG+LL+ALL G LPF+G+SLEDVFEAIK V+L+F G+WES+SKP RDLLERILTR+A +RITADE+L+HPWI+FYTERTL++LSFKSK+K+Q G S + I +RK+ + SS S+S+SLS + +EQDD G VDALAVAIS+V ISEPKRSRLC PTSPIREQ SSNV SN+LCKA
Sbjct: 1 MRKKRKGSDLVSTDNNKKEIVESTGD-SESLISNLKCHYSLEDYVRLKKRCCKEDVVYGGDDINGSCKNRLAGIAATAPPCATSSLV-LSGRGIKRKIGCIDVATQMGRKNKIAEDYIRGATIGKGKFGSVWLCRCRVTGVEFACKTLVKGEETVHREVEIMQHLSGHPGVVTLKAVYEDLESFHLVMELCSGGRLIDQMTTEGRYSEQRAANIFKELMMVIKYCHEMGVVHRDVKPENILLTTSGKIKLADFGLAVRITNGQSLAGLAGSPAYVAPEVLSGNYSEKVDVWSAGILLHALLVGVLPFQGDSLEDVFEAIKNVELNFHTGVWESVSKPARDLLERILTRNADSRITADEVLSHPWIIFYTERTLKSLSFKSKSKHQAGSSSQTAATTSILELTRKLTINGSSVKHSSPLSTSKSLSHDNSEEQDDSGLVDALAVAISNVRISEPKRSRLCVPTSPIREQRSSNVASNNLCKA 479
BLAST of XM_017381855.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4LKM2 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011} (Fragment))
HSP 1 Score: 635.95 bits (1639), Expect = 0.000e+0
Identity = 336/480 (70.00%), Postives = 381/480 (79.38%), Query Frame = 0
Match: A0A6A4LKM2 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011} (Fragment))
HSP 1 Score: 635.95 bits (1639), Expect = 0.000e+0
Identity = 336/480 (70.00%), Postives = 381/480 (79.38%), Query Frame = 0
Query: 1 MRKKRKGTELLCPNRKD-VLGSTSDDSGSARSNLRCHYSLEDYDRLKKRCKEGVESVDETVGSCRVRLAGIAATAPACATTSLSGLSGRGIKRKIGCIDAATQMGRKNKIEDDFISGATIGKGKFGSVWLCRSKVSEEDFACKTLHKGEETVHREVEIMQHLSGHPGVVTLKAVYEDPKSFHLVMELCSGGRLIDQMTKQGRYSEQQAANIFKDLMLVIKYCHEMGVVHRDIKPENILLTNS----------------DQSLNGIAGSPAYVAPEVLLGNYSEKVDIWSAGVLLYALLAGALPFKGNSLEDVFEAIKTVKLDFQAGIWESISKPLRDLLERILTRDAAARITADEILAHPWILFYTERTLRTLSFKSKTKNQPGSHHLPVSFIPNSSRKIRDSNFVDDDSSRNSSSESLSQ----EKDEQDDCGFVDALAVAISHVTISEPKRSRLCGPTSPIREQCSSNVTSNSLCKAF 459
MRKKRKG+ELL N+++ VL STS S+ S LR HYSLEDY RLKKRCKE V E VGSC+ RL GIAATAP C T+SL L GRG+KRKIGCID ATQMGRKNKIE+D+++GATIG+GKFGSVWLCRS+V+ +FACKTL KGEETVHREVEIMQHLSGHPGVVTL+AVYED + FHLVMELCSGGRLIDQM+K+ RYSE +AANIFK+LMLVIKYCHEMGVVHRD+KPENILLT S Q L G+AGSPAYVAPEVL GNYSEKVDIWSAG+LL+ALLAG LPF+G+SL+ VFE IK VKLDF GIWESISKP RDL+ERILTRD AARITADE+L HPWILFYTERTLR+LS KSK+K+Q P +SR ++ D SR + S S+ +DDCG VDALAVAISHVTISEPKRSRLCGP+SPIREQCSSN+++N+LCKAF
Sbjct: 82 MRKKRKGSELLHENKEEEVLESTSR---SSLSKLRTHYSLEDYARLKKRCKEDVVG-SEHVGSCQSRLVGIAATAPPCGTSSLV-LPGRGLKRKIGCIDVATQMGRKNKIEEDYVAGATIGRGKFGSVWLCRSRVTGVEFACKTLCKGEETVHREVEIMQHLSGHPGVVTLEAVYEDTECFHLVMELCSGGRLIDQMSKEVRYSEHRAANIFKELMLVIKYCHEMGVVHRDVKPENILLTTSGKIKLADFGLAMRVANGQRLTGLAGSPAYVAPEVLSGNYSEKVDIWSAGILLHALLAGILPFQGDSLDAVFEQIKNVKLDFHTGIWESISKPARDLIERILTRDVAARITADEVLTHPWILFYTERTLRSLSIKSKSKSQSAP---PSQLSSPTSR-------LEQDESRATHGGSFSKGAILTSSTEDDCGLVDALAVAISHVTISEPKRSRLCGPSSPIREQCSSNLSTNNLCKAF 546
BLAST of XM_017381855.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0FBL1 ((Phosphoenolpyruvate carboxylase-related kinase 2 {ECO:0000313|EMBL:GFY96100.1}))
HSP 1 Score: 635.565 bits (1638), Expect = 0.000e+0
Identity = 328/509 (64.44%), Postives = 374/509 (73.48%), Query Frame = 0
Match: A0A7J0FBL1 ((Phosphoenolpyruvate carboxylase-related kinase 2 {ECO:0000313|EMBL:GFY96100.1}))
HSP 1 Score: 635.565 bits (1638), Expect = 0.000e+0
Identity = 328/509 (64.44%), Postives = 374/509 (73.48%), Query Frame = 0
Query: 1 MRKKRKGTELLCPNRKDVLGSTSDDSGSARSNLRCHYSLEDYDRLKKRCKEGVESVDETVGSCRVRLAGIAATAPACATTSLSGLSGRGIKRKIGCIDAATQMGRKNKIEDDFISGATIGKGKFGSVWLCRSKVSEEDFACKTLHKGEETVHREVEIMQHLSGHPGVVTLKAVYEDPKSFHLVMELCSGGRLIDQMTKQGRYSEQQAANIFKDLMLVIKYCHEMGVVHRDIKPENILLTNSD---------------------------------------------QSLNGIAGSPAYVAPEVLLGNYSEKVDIWSAGVLLYALLAGALPFKGNSLEDVFEAIKTVKLDFQAGIWESISKPLRDLLERILTRDAAARITADEILAHPWILFYTERTLRTLSFKSKTKNQPGSHHLPVSFIPNSSR-KIRDSNFVDDDSSRNSSSESLSQ----EKDEQDDCGFVDALAVAISHVTISEPKRSRLCGPTSPIREQCSSNVTSNSLCKAF 459
MR+KRKG+E+LC + +L ST D S+ NL+CHYSLEDY RLKKRCKE D+T+GSC+ RL GIAATAP C T+S+ GRG+KRKIGCID ATQMGRKNKIEDD+ G TIGKGKFGSVWLCR +V+ +FACKTL K EETVHREVEIMQHLSGHPGVVTLKAVYED + FHLVMELCSGGRLIDQM K+ RYSE +AANIFK+LMLVIKYCH+MGVVHRDIKPENILLT S Q L G+AGSP YVAPEVLLGNY EKVDIWSAGVLL+ LL GALPF+G SLE VFEAI+ V LDF GIWESISKP RDL+ER L+RD A RITADE+L+HPWILFYTERTLRTLS K K K+ P P + ++R + ++S S + SSE+L +++EQDDCG VD LAVAISHVTISEPK+SRLCGPTSPIREQCSSN+T+N+LCKAF
Sbjct: 1 MRRKRKGSEILCLE-EGILESTKRDLRSSLLNLKCHYSLEDYARLKKRCKED-NVGDKTIGSCKSRLVGIAATAPPCGTSSVVS-QGRGLKRKIGCIDVATQMGRKNKIEDDYDEGPTIGKGKFGSVWLCRHRVAGVEFACKTLCKKEETVHREVEIMQHLSGHPGVVTLKAVYEDSECFHLVMELCSGGRLIDQMAKEVRYSEHRAANIFKELMLVIKYCHDMGVVHRDIKPENILLTTSGKIKLADFGLTMRVANGNYLSPSFCNIVLFFMSIIPLCYCSFTFKCQRLTGLAGSPGYVAPEVLLGNYCEKVDIWSAGVLLHTLLTGALPFQGGSLEAVFEAIQNVNLDFHTGIWESISKPARDLMERTLSRDVATRITADEVLSHPWILFYTERTLRTLSIKPKLKSHPTP---PSQLVATTARLEPKESRSAQASFSGSESSETLPGRSGCKREEQDDCGLVDVLAVAISHVTISEPKKSRLCGPTSPIREQCSSNMTANNLCKAF 503
BLAST of XM_017381855.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DQT6 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 633.639 bits (1633), Expect = 0.000e+0
Identity = 328/478 (68.62%), Postives = 377/478 (78.87%), Query Frame = 0
Match: A0A4S4DQT6 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 633.639 bits (1633), Expect = 0.000e+0
Identity = 328/478 (68.62%), Postives = 377/478 (78.87%), Query Frame = 0
Query: 1 MRKKRKGTELLCPNRKDVLGSTSDDSGSARSNLRCHYSLEDYDRLKKRCKEGVESVDETVGSCRVRLAGIAATAPACATTSLSGLSGRGIKRKIGCIDAATQMGRKNKIEDDFISGATIGKGKFGSVWLCRSKVSEEDFACKTLHKGEETVHREVEIMQHLSGHPGVVTLKAVYEDPKSFHLVMELCSGGRLIDQMTKQGRYSEQQAANIFKDLMLVIKYCHEMGVVHRDIKPENILLTNS----------------DQSLNGIAGSPAYVAPEVLLGNYSEKVDIWSAGVLLYALLAGALPFKGNSLEDVFEAIKTVKLDFQAGIWESISKPLRDLLERILTRDAAARITADEILAHPWILFYTERTLRTLSFKSKTKNQ--PGSHHLPVSFIPNSS-RKIRDSNFVDDDSSRNSSSESLSQEKDEQDDCGFVDALAVAISHVTISEPKRSRLCGPTSPIREQCSSNVTSNSLCKAF 459
MRKKRKG+++L PN+ + ++ DS S SNL+ HYSLEDY RL+KRCKE V +E VGSC RL GIAATAP C T+SL L GRG+KRKIGCID ATQ GRKNKIEDD+I G TIGKGKFGSVWLC+S+ + +FACKTL KGEETVHREVEIMQHLSGHPGVVTL+AVYED + FHLVMELCSGGRLIDQM K+ +YSE +AANIFK+LMLVIKYCHEMGVVHRDIKPENILLT S Q L G+AGSPAYVAPEVLLGNYSEKVDIWSAG+LLYALL G LPF+G+SLE VFEAIK VKLDF +GIWES+SKP R+L+ERILTRD A RITA+E+L+HPWILFYTERTLRTLS KSK+K+ P S L + + N+ R + S + +S S S + +E DDCG VDALAVAIS+V ISEPKRSR+C PTSPIREQCSSN+ +N+LCKAF
Sbjct: 1 MRKKRKGSDILYPNQDQGILESTSDSRSQLSNLKSHYSLEDYARLRKRCKEDVVG-NEHVGSCTNRLVGIAATAPPCGTSSLV-LPGRGLKRKIGCIDVATQTGRKNKIEDDYIVGTTIGKGKFGSVWLCQSRATGVEFACKTLCKGEETVHREVEIMQHLSGHPGVVTLEAVYEDSECFHLVMELCSGGRLIDQMIKEVQYSEHRAANIFKELMLVIKYCHEMGVVHRDIKPENILLTTSGKIKLADFGLAMRVANGQRLTGLAGSPAYVAPEVLLGNYSEKVDIWSAGILLYALLTGVLPFQGDSLEAVFEAIKNVKLDFHSGIWESVSKPARNLIERILTRDVATRITAEEVLSHPWILFYTERTLRTLSIKSKSKSHSAPPSQLLATTRLDNNECRTLYGS--ISKGASPASLPGSFDCKTEEHDDCGLVDALAVAISNVRISEPKRSRICVPTSPIREQCSSNMKANNLCKAF 474
BLAST of XM_017381855.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AGR2 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 632.098 bits (1629), Expect = 0.000e+0
Identity = 332/480 (69.17%), Postives = 377/480 (78.54%), Query Frame = 0
Match: A0A5J5AGR2 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 632.098 bits (1629), Expect = 0.000e+0
Identity = 332/480 (69.17%), Postives = 377/480 (78.54%), Query Frame = 0
Query: 1 MRKKRKGTELLCPNRKDVLGSTSDDSGSARSNLRCHYSLEDYDRLKKRCKEGVESVDETVGSCRVRLAGIAATAPACATTSLSGLSGRGIKRKIGCIDAATQMGRKNKIEDDFISGATIGKGKFGSVWLCRSKVSEEDFACKTLHKGEETVHREVEIMQHLSGHPGVVTLKAVYEDPKSFHLVMELCSGGRLIDQMTKQGRYSEQQAANIFKDLMLVIKYCHEMGVVHRDIKPENILLTNS----------------DQSLNGIAGSPAYVAPEVLLGNYSEKVDIWSAGVLLYALLAGALPFKGNSLEDVFEAIKTVKLDFQAGIWESISKPLRDLLERILTRDAAARITADEILAHPWILFYTERTLRTLSFKSKTKNQPGSHHLPVS---FIPNSSRKIRDSNFVDDDSSRNSSSESLSQ--EKDEQDDCGFVDALAVAISHVTISEPKRSRLCGPTSPIREQCSSNVTSNSLCKAF 459
MRKKRKG+E+L PN+ ++L ST + S S+ S L+ HYSLED RL+KR KE V E VGSC+ RL GIAATAP C ++SL + GRG+KRKIGCIDAATQMGRKNKIEDD+ISGAT+GKGKFGSVWLCRS+V+ +FACKTL KGEETVHREVEIMQHLSGHPGVVTL+AVYED + FHLVMELCSGGRLIDQM+K G YSE +AANI K+LMLVIKYCH+MGVVHRD+KPENILLT S Q L G+AGSPAYVAPEVLLGNYSEKVDIWSAGVLL+ALL G LPF+G+SLE VFEAIKTVKLDF GIWES+SKP RDL++R+LTRD ARITADE+L+HPWILFYTERTLRTLS KSK KN G+ ++ I ++I S S S S S S E EQDDCG VD LAVAIS+V ISEPKRSRLC PTSPIREQ SSN+ +N+LCKAF
Sbjct: 4 MRKKRKGSEILRPNQIEILQSTLE-SQSSFSKLKFHYSLEDCARLRKRYKEDVVGA-EHVGSCKTRLNGIAATAPPCGSSSLVSV-GRGLKRKIGCIDAATQMGRKNKIEDDYISGATLGKGKFGSVWLCRSRVTGVEFACKTLGKGEETVHREVEIMQHLSGHPGVVTLEAVYEDSECFHLVMELCSGGRLIDQMSKVGPYSEHRAANILKELMLVIKYCHDMGVVHRDVKPENILLTISGKIKLADFGLAMRVANGQKLTGLAGSPAYVAPEVLLGNYSEKVDIWSAGVLLHALLVGVLPFQGDSLEAVFEAIKTVKLDFHTGIWESVSKPARDLIQRMLTRDVGARITADEVLSHPWILFYTERTLRTLSIKSKLKNPSGTPPQLLATPKTIETVGKRILGSGSPSSGSGSGSVSSSGSSVCESKEQDDCGLVDVLAVAISNVRISEPKRSRLCCPTSPIREQRSSNLKANNLCKAF 480
| Match Name | Stats | Description |
|---|---|---|
| A0A103XBY0 | E-Value: 0.000e+0, PID: 69.44 | (Protein kinase, ATP binding site-containing prote... [more] |
| A0A2R6R2V9 | E-Value: 0.000e+0, PID: 68.17 | (Serine/threonine-protein kinase {ECO:0000313|EMBL... [more] |
| A0A5B6YS20 | E-Value: 0.000e+0, PID: 69.31 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A834LLG0 | E-Value: 0.000e+0, PID: 70.32 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7139... [more] |
| A0A2J6JMS6 | E-Value: 0.000e+0, PID: 69.28 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5N6PCQ1 | E-Value: 0.000e+0, PID: 70.27 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A6A4LKM2 | E-Value: 0.000e+0, PID: 70.00 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A7J0FBL1 | E-Value: 0.000e+0, PID: 64.44 | (Phosphoenolpyruvate carboxylase-related kinase 2 ... [more] |
| A0A4S4DQT6 | E-Value: 0.000e+0, PID: 68.62 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5J5AGR2 | E-Value: 0.000e+0, PID: 69.17 | Protein kinase domain-containing protein {ECO:0000... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |