Resource Type:
Polypeptide
Name:
XM_017387822.1
Identifier:
XM_017387822.1-protein
Sequence:
MDSNGLPTLARVKLTDLIATEGLPSDAYRLSIATLSQSLAHYSAAIIQLP
GGDGALLNSCLESARLYFHHKPSYPSADISHINDSREWCKTSGYYADTRL
WLETYDYRPGLTPTGPDSEFEFPPAGLSDIFVLLGKAARDILDAISYYLN
LRSSAFTEILDNVPLRNSDISSSVLSVSCHGRPSFQGEQHHSLTTQEDDH
LVMFSDPEHQVDKSLLSLIKSDKAGLHVRDYNGRWVLVDGDLGPEEAIIY
PGLALYQATAGYVSPALYRTDIGNHQGTMCGRCSVSFKLMPKSLASLNCS
EMRAAGHGVESQFQIPVPVDDFMQKSHSTDQLFNRQNFPSFSFDPAQDGS
IKPPMRKKKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADQKSIKLRFCS
LKECENHIHNVDSPCAHTRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEP
GWTAAHDMELSFIEPGQSSQHTAN
Sequence Length:
474
Sequence Checksum:
a3f2060891d48c0b43f47ea749cd76a1
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017387822.1, derives from mRNA, XM_017387822.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017387822.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017387822.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A8C8 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8527163.1}))
HSP 1 Score: 829.321 bits (2141), Expect = 0.000e+0
Identity = 387/474 (81.65%), Postives = 432/474 (91.14%), Query Frame = 0
Match: A0A5J5A8C8 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8527163.1}))
HSP 1 Score: 829.321 bits (2141), Expect = 0.000e+0
Identity = 387/474 (81.65%), Postives = 432/474 (91.14%), Query Frame = 0
Query: 1 MDSNGLPTLARVKLTDLIATEGLPSDAYRLSIATLSQSLAHYSAAIIQLPGGDGALLNSCLESARLYFHHKPSYPSADISHINDSREWCKTSGYYADTRLWLETYDYRPGLTPTGPDSEFEFPPAGLSDIFVLLGKAARDILDAISYYLNLRSSAFTEILDNVPLRNSDISSSVLSVSCHGRPSFQGEQHHSLTTQEDDHLVMFSDPEHQVDKSLLSLIKSDKAGLHVRDYNGRWVLVDGDLGPEEAIIYPGLALYQATAGYVSPALYRTDIGNHQGTMCGRCSVSFKLMPKSLASLNCSEMRAAGHGVESQFQIPVPVDDFMQKSHSTDQLFNRQNFPSFSFDPAQDGSIKPPMRKKKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADQKSIKLRFCSLKECENHIHNVDSPCAHTRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTAAHDMELSFIEPGQSSQHTAN 474
M NGLP+L RVKLTDLIA+EGLPSD+Y+LS++TLSQSLA YSAAIIQLP DGALL SCLESAR YFH +PSYPSAD+ H NDSREWCKTSGY+ D +LW ETYD+RPGLTPT P++E EFPPAGL+DIF LLGKAARDILDAIS+YLNLRSS FTEILDN+PLRN ++SSSVLSV CH RPSFQG QHH+LTTQED LVMFSD +H VDKSL+SL+KSDKAGLHVRD++GRWVLVDGDLGP+EAI+YPGLALYQATAGYVSPAL+RT+I N QG M GRCS++FKLMPKS+ SLNCSEMRAAGHGVE+QFQ+PVPVDDFMQ+SH TDQLFNR NFPSF+F AQDGS+KP +R++KNNSRCKPLPPSKRLRLEAQRVLKERVQDIAD+K IKLRFC+LK+CENHIH +DSPCA+ RMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTA HDMELS IEPGQ SQH+AN
Sbjct: 1 MAGNGLPSLGRVKLTDLIASEGLPSDSYKLSVSTLSQSLAQYSAAIIQLPTSDGALLRSCLESARFYFHQRPSYPSADMIHSNDSREWCKTSGYFTDPQLWQETYDFRPGLTPTEPNNEMEFPPAGLADIFALLGKAARDILDAISFYLNLRSSPFTEILDNIPLRNREVSSSVLSVCCHARPSFQGAQHHNLTTQEDGQLVMFSDHDHLVDKSLISLVKSDKAGLHVRDFHGRWVLVDGDLGPQEAIVYPGLALYQATAGYVSPALHRTEIDNLQGNMYGRCSLTFKLMPKSMTSLNCSEMRAAGHGVEAQFQLPVPVDDFMQRSHPTDQLFNRPNFPSFNFPTAQDGSMKPMLRRRKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCTLKDCENHIHTLDSPCANIRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTATHDMELSLIEPGQPSQHSAN 474
BLAST of XM_017387822.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A0I1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8523458.1}))
HSP 1 Score: 821.231 bits (2120), Expect = 0.000e+0
Identity = 382/474 (80.59%), Postives = 429/474 (90.51%), Query Frame = 0
Match: A0A5J5A0I1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8523458.1}))
HSP 1 Score: 821.231 bits (2120), Expect = 0.000e+0
Identity = 382/474 (80.59%), Postives = 429/474 (90.51%), Query Frame = 0
Query: 1 MDSNGLPTLARVKLTDLIATEGLPSDAYRLSIATLSQSLAHYSAAIIQLPGGDGALLNSCLESARLYFHHKPSYPSADISHINDSREWCKTSGYYADTRLWLETYDYRPGLTPTGPDSEFEFPPAGLSDIFVLLGKAARDILDAISYYLNLRSSAFTEILDNVPLRNSDISSSVLSVSCHGRPSFQGEQHHSLTTQEDDHLVMFSDPEHQVDKSLLSLIKSDKAGLHVRDYNGRWVLVDGDLGPEEAIIYPGLALYQATAGYVSPALYRTDIGNHQGTMCGRCSVSFKLMPKSLASLNCSEMRAAGHGVESQFQIPVPVDDFMQKSHSTDQLFNRQNFPSFSFDPAQDGSIKPPMRKKKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADQKSIKLRFCSLKECENHIHNVDSPCAHTRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTAAHDMELSFIEPGQSSQHTAN 474
M NGLP+L RVKLTDLI +EG+PSD+Y+LS++TLSQSLA YSAAIIQLP DGALL SCLESARLYFH +PSYPSAD+ H ++SREWCKTSGYYAD +LWLETYD+RPGLTPT P++E EFPPAGL DIF LLGKAARDILDAIS+YLNLRSS FTEILDNVPLRN +ISSSVLSV CH RPSFQG QHH+LTTQED L+MFS+ EHQVDKSL+SL+KSDKAGLHVRD +GRW+LVDGDLGP+EAI+YPGLALYQATAGYVSPAL RT+IGN QG M GRCSV+FK MPKS+ SLNCSEMRAAGHGVE+QFQ+PV VDDFMQ+SH TDQLFNR NFPSF+F AQDG +KP +R++KNNSRCKPLPPSKRLRLEAQRVLKERVQDIAD+K IKLRFC+LKECE+HIH +DSPCA+ R++IGWPPGVPFVHPHDLPN+AKIGFLETYEPGW A H+MELS IEPGQ SQH+AN
Sbjct: 1 MAGNGLPSLGRVKLTDLITSEGIPSDSYKLSVSTLSQSLAQYSAAIIQLPSSDGALLRSCLESARLYFHQRPSYPSADMIHSSESREWCKTSGYYADPQLWLETYDFRPGLTPTEPNNEMEFPPAGLVDIFALLGKAARDILDAISFYLNLRSSPFTEILDNVPLRNQEISSSVLSVCCHARPSFQGAQHHNLTTQEDGQLIMFSEHEHQVDKSLISLVKSDKAGLHVRDCHGRWILVDGDLGPQEAIVYPGLALYQATAGYVSPALNRTEIGNMQGNMYGRCSVAFKFMPKSMTSLNCSEMRAAGHGVEAQFQLPVLVDDFMQRSHPTDQLFNRHNFPSFNFPTAQDGCMKPLLRRRKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCTLKECESHIHTLDSPCANIRIQIGWPPGVPFVHPHDLPNRAKIGFLETYEPGWMATHNMELSLIEPGQRSQHSAN 474
BLAST of XM_017387822.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103YJD3 ((Uncharacterized protein {ECO:0000313|EMBL:KVI10226.1}))
HSP 1 Score: 814.298 bits (2102), Expect = 0.000e+0
Identity = 385/474 (81.22%), Postives = 421/474 (88.82%), Query Frame = 0
Match: A0A103YJD3 ((Uncharacterized protein {ECO:0000313|EMBL:KVI10226.1}))
HSP 1 Score: 814.298 bits (2102), Expect = 0.000e+0
Identity = 385/474 (81.22%), Postives = 421/474 (88.82%), Query Frame = 0
Query: 1 MDSNGLPTLARVKLTDLIATEGLPSDAYRLSIATLSQSLAHYSAAIIQLPGGDGALLNSCLESARLYFHHKPSYPSADISHINDSREWCKTSGYYADTRLWLETYDYRPGLTPTGPDSEFEFPPAGLSDIFVLLGKAARDILDAISYYLNLRSSAFTEILDNVPLRNSDISSSVLSVSCHGRPSFQGEQHHSLTTQEDDHLVMFSDPEHQVDKSLLSLIKSDKAGLHVRDYNGRWVLVDGDLGPEEAIIYPGLALYQATAGYVSPALYRTDIGNHQGTMCGRCSVSFKLMPKSLASLNCSEMRAAGHGVESQFQIPVPVDDFMQKSHSTDQLFNRQNFPSFSFDPAQDGSIKPPMRKKKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADQKSIKLRFCSLKECENHIHNVDSPCAHTRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTAAHDMELSFIEPGQSSQHTAN 474
M NG PTL RVKLTDLIA+EGLPSD Y+LS++TLSQSLA YSAAIIQLP DGALL CLESAR YF KP+YP A++ HINDSREWCKTSGY AD +LW E+YDYRPGLT +E E PPAGL+DIFVLLGKAARDILDAIS+YLNLRS AFTEILDN+PLRN +ISSSVLSV CH RPSFQG QH +LTTQED LVMFSD EHQVDKSL+SLIKSDKAGLH+RD+NGRWVLVDGDLGPEEAI+YPGLALY ATAGYVSPAL+RTDIGN G MCGRCS+SFKLMPKS+ SLNCSEMRAAGHGVE+QFQ+PV VDDFMQ+SHS DQLFNR +FPSFSF AQDGS+KP M++KKNNSRCKPLPPSKRLRLEAQRVLKERVQD+AD+K IKLRFC+LKECE+HIH +DSPCA+ R+EIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTA HDMELS IE GQSSQH N
Sbjct: 22 MAGNGPPTLGRVKLTDLIASEGLPSDTYKLSVSTLSQSLAQYSAAIIQLPPSDGALLRCCLESARPYFTQKPAYPPANMIHINDSREWCKTSGYSADPQLWQESYDYRPGLTSIENHNEIELPPAGLADIFVLLGKAARDILDAISFYLNLRSCAFTEILDNIPLRNREISSSVLSVGCHARPSFQGGQHQNLTTQEDGQLVMFSDREHQVDKSLISLIKSDKAGLHIRDFNGRWVLVDGDLGPEEAIVYPGLALYHATAGYVSPALHRTDIGNLHGNMCGRCSISFKLMPKSMTSLNCSEMRAAGHGVEAQFQVPVSVDDFMQRSHSLDQLFNRNSFPSFSFPTAQDGSMKPLMKRKKNNSRCKPLPPSKRLRLEAQRVLKERVQDMADKKGIKLRFCTLKECESHIHTLDSPCANIRLEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTANHDMELSLIEAGQSSQHAEN 495
BLAST of XM_017387822.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7H8S4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5948967.1}))
HSP 1 Score: 813.527 bits (2100), Expect = 0.000e+0
Identity = 380/474 (80.17%), Postives = 429/474 (90.51%), Query Frame = 0
Match: A0A7J7H8S4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5948967.1}))
HSP 1 Score: 813.527 bits (2100), Expect = 0.000e+0
Identity = 380/474 (80.17%), Postives = 429/474 (90.51%), Query Frame = 0
Query: 1 MDSNGLPTLARVKLTDLIATEGLPSDAYRLSIATLSQSLAHYSAAIIQLPGGDGALLNSCLESARLYFHHKPSYPSADISHINDSREWCKTSGYYADTRLWLETYDYRPGLTPTGPDSEFEFPPAGLSDIFVLLGKAARDILDAISYYLNLRSSAFTEILDNVPLRNSDISSSVLSVSCHGRPSFQGEQHHSLTTQEDDHLVMFSDPEHQVDKSLLSLIKSDKAGLHVRDYNGRWVLVDGDLGPEEAIIYPGLALYQATAGYVSPALYRTDIGNHQGTMCGRCSVSFKLMPKSLASLNCSEMRAAGHGVESQFQIPVPVDDFMQKSHSTDQLFNRQNFPSFSFDPAQDGSIKPPMRKKKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADQKSIKLRFCSLKECENHIHNVDSPCAHTRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTAAHDMELSFIEPGQSSQHTAN 474
M NGLP+L RVKL+DLI +EGLPSD Y+LS++TLSQSLA YSAAIIQLP D ALL SCLESARLYFH +PSYPSAD+ H N+SREWCKTSGYYAD +LW ETYD+RPGLTP P++E EF P+GL+DIFVLLGKAARDILDAIS+YLNLRSS FTEILDNVPLRN +ISSS+LS+ CH RPSFQG QHH+LTTQED LVMFS+ E QVDKSL+SL+KSDKAGLH+RD++GRWVLVD DLGP+EAI+YPGLALYQATAGYVSPAL+RT+IGN QG + GRCS+SFKLMPKS+ SLNCSEMRAAGH VE+QFQ+PVPVDDFMQ+SH TDQLFNRQ+F SF+F AQDGS+KP +R++KNNSRCKPLPPSKRLRLEAQRVLKERVQDIAD+K IKLRFC+LKECE+HIH +DSPCA+ RMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTA HDMELS I+PGQ SQH+AN
Sbjct: 1 MAGNGLPSLGRVKLSDLIPSEGLPSDLYKLSVSTLSQSLAQYSAAIIQLPPTDAALLRSCLESARLYFHQRPSYPSADMIHTNNSREWCKTSGYYADPQLWQETYDFRPGLTPMEPNNEMEFAPSGLADIFVLLGKAARDILDAISFYLNLRSSPFTEILDNVPLRNREISSSLLSICCHARPSFQGAQHHNLTTQEDGQLVMFSEHEQQVDKSLISLVKSDKAGLHIRDFHGRWVLVDEDLGPQEAIVYPGLALYQATAGYVSPALHRTEIGNLQGNLFGRCSLSFKLMPKSMTSLNCSEMRAAGHDVEAQFQLPVPVDDFMQRSHPTDQLFNRQSFSSFNFPAAQDGSMKPLLRRRKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCTLKECESHIHTLDSPCANIRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTATHDMELSLIDPGQPSQHSAN 474
BLAST of XM_017387822.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7SWX7 ((Uncharacterized protein {ECO:0000313|EMBL:CBI21777.3}))
HSP 1 Score: 803.512 bits (2074), Expect = 0.000e+0
Identity = 379/474 (79.96%), Postives = 424/474 (89.45%), Query Frame = 0
Match: D7SWX7 ((Uncharacterized protein {ECO:0000313|EMBL:CBI21777.3}))
HSP 1 Score: 803.512 bits (2074), Expect = 0.000e+0
Identity = 379/474 (79.96%), Postives = 424/474 (89.45%), Query Frame = 0
Query: 1 MDSNGLPTLARVKLTDLIATEGLPSDAYRLSIATLSQSLAHYSAAIIQLPGGDGALLNSCLESARLYFHHKPSYPSADISHINDSREWCKTSGYYADTRLWLETYDYRPGLTPTGPDSEFEFPPAGLSDIFVLLGKAARDILDAISYYLNLRSSAFTEILDNVPLRNSDISSSVLSVSCHGRPSFQGEQHHSLTTQEDDHLVMFSDPEHQVDKSLLSLIKSDKAGLHVRDYNGRWVLVDGDLGPEEAIIYPGLALYQATAGYVSPALYRTDIGNHQGTMCGRCSVSFKLMPKSLASLNCSEMRAAGHGVESQFQIPVPVDDFMQKSHSTDQLFNRQNFPSFSFDPAQDGSIKPPMRKKKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADQKSIKLRFCSLKECENHIHNVDSPCAHTRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTAAHDMELSFIEPGQSSQHTAN 474
M N LP+L RVKL DLIA EGLPSD+Y+LS++TLSQSLA YSAAIIQ P DGALL S L+SA LYFH + SYP+AD+ H N+SREWCKTSGYYAD + W ETYD+RPGLTP +S EFPPAGL DIF LLGKAARDILDAIS+YLNLRSS FTEILDNVPLR+ +ISSSVLSV C+GRPSFQG QHH+LTTQED LVMFSD EHQVDKSL++L+KSDKAGLHVRD++GRWVLVDGDLGP+EAI+YPGLALYQATAGYV PAL+RT+I N QG M GRCS++FKLMPKS+ SLNCSEMRAAGHGVE+QFQ+PVPVDDFMQ+SH T+QLFNR NFPSF+F AQDGS+KP MR++KNNSRCKPLPPSKRLRLEAQRVLKERVQDIAD+K IKLRFC+LKECE+HIH +DSPCA+TRMEIGWPPGVPFVHPHDLPNKAKIGFLE YEPGWTA HDMELS IEPGQ+SQH+AN
Sbjct: 1 MAGNSLPSLGRVKLCDLIACEGLPSDSYKLSVSTLSQSLAQYSAAIIQFPSSDGALLRSGLDSAHLYFHQRASYPAADMIHNNESREWCKTSGYYADPQQWQETYDFRPGLTPPESNSGLEFPPAGLPDIFSLLGKAARDILDAISFYLNLRSSPFTEILDNVPLRSREISSSVLSVCCYGRPSFQGPQHHNLTTQEDGQLVMFSDHEHQVDKSLITLVKSDKAGLHVRDFHGRWVLVDGDLGPQEAIVYPGLALYQATAGYVGPALHRTEISNMQGNMYGRCSLAFKLMPKSMTSLNCSEMRAAGHGVEAQFQLPVPVDDFMQRSHPTEQLFNRNNFPSFNFPTAQDGSMKPLMRRRKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCNLKECESHIHTLDSPCANTRMEIGWPPGVPFVHPHDLPNKAKIGFLEAYEPGWTATHDMELSLIEPGQASQHSAN 474
BLAST of XM_017387822.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6MJ55 ((Uncharacterized protein {ECO:0000313|EMBL:PLY99575.1}))
HSP 1 Score: 800.045 bits (2065), Expect = 0.000e+0
Identity = 377/471 (80.04%), Postives = 423/471 (89.81%), Query Frame = 0
Match: A0A2J6MJ55 ((Uncharacterized protein {ECO:0000313|EMBL:PLY99575.1}))
HSP 1 Score: 800.045 bits (2065), Expect = 0.000e+0
Identity = 377/471 (80.04%), Postives = 423/471 (89.81%), Query Frame = 0
Query: 1 MDSNGLPTLARVKLTDLIATEGLPSDAYRLSIATLSQSLAHYSAAIIQLPGGDGALLNSCLESARLYFHHKPSYPSADISHINDSREWCKTSGYYADTRLWLETYDYRPGLTPTGPDSEFEFPPAGLSDIFVLLGKAARDILDAISYYLNLRSSAFTEILDNVPLRNSDISSSVLSVSCHGRPSFQGEQHHSLTTQEDDHLVMFSDPEHQVDKSLLSLIKSDKAGLHVRDYNGRWVLVDGDLGPEEAIIYPGLALYQATAGYVSPALYRTDIGNHQGTMCGRCSVSFKLMPKSLASLNCSEMRAAGHGVESQFQIPVPVDDFMQKSHSTDQLFNRQNFPSFSFDPAQDGSIKPPMRKKKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADQKSIKLRFCSLKECENHIHNVDSPCAHTRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTAAHDMELSFIEPGQSSQH 471
M NGLP+L RVKLTDLIA+EG+PSD Y+LS++TLSQSLA YSAAIIQLP DGALL CLESAR YF+ KP YPS+D+ HI+DSREWCKTSGY AD +LW E+YDYRPGLT T P+++ E PP+GL+DIF+LLGKAARDILDAIS+YLNLRS AFTEILDNVPLRN +ISSSVLSV CH RPSFQG QHH+LTTQED LVMF+D EHQVDKSL+S+IKSDKAGLH+RD+NGRWVLVDGDLGP+EAI+YPGLALY ATAGYVSPAL+RTDI + G M GRCSVS+KLMPKS+ SLNCSEMRAAGHGVE+QFQIPV VDDFMQ+SHS DQLFNR +FPSFSF AQ+GSIKP M++KKN++RCKPLPPSKRLRLEAQRVLKERVQDIAD+K IKLRFCSLKECE+HIH +DSPC + R+EIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTA HDMEL+ IE GQSSQH
Sbjct: 1 MAGNGLPSLGRVKLTDLIASEGIPSDTYKLSVSTLSQSLAQYSAAIIQLPPTDGALLRCCLESARPYFNQKPPYPSSDMIHIDDSREWCKTSGYTADPQLWQESYDYRPGLTSTEPNNDIELPPSGLTDIFMLLGKAARDILDAISFYLNLRSCAFTEILDNVPLRNREISSSVLSVGCHARPSFQGAQHHNLTTQEDGQLVMFTDHEHQVDKSLVSIIKSDKAGLHIRDFNGRWVLVDGDLGPQEAIMYPGLALYHATAGYVSPALHRTDINSLHGGMYGRCSVSYKLMPKSMTSLNCSEMRAAGHGVEAQFQIPVSVDDFMQRSHSLDQLFNRNSFPSFSFPTAQEGSIKPLMKRKKNSTRCKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCSLKECESHIHTLDSPCGNIRLEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTANHDMELTLIETGQSSQH 471
BLAST of XM_017387822.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7PMN4 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4107241.1}))
HSP 1 Score: 798.505 bits (2061), Expect = 0.000e+0
Identity = 376/471 (79.83%), Postives = 422/471 (89.60%), Query Frame = 0
Match: A0A6S7PMN4 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4107241.1}))
HSP 1 Score: 798.505 bits (2061), Expect = 0.000e+0
Identity = 376/471 (79.83%), Postives = 422/471 (89.60%), Query Frame = 0
Query: 1 MDSNGLPTLARVKLTDLIATEGLPSDAYRLSIATLSQSLAHYSAAIIQLPGGDGALLNSCLESARLYFHHKPSYPSADISHINDSREWCKTSGYYADTRLWLETYDYRPGLTPTGPDSEFEFPPAGLSDIFVLLGKAARDILDAISYYLNLRSSAFTEILDNVPLRNSDISSSVLSVSCHGRPSFQGEQHHSLTTQEDDHLVMFSDPEHQVDKSLLSLIKSDKAGLHVRDYNGRWVLVDGDLGPEEAIIYPGLALYQATAGYVSPALYRTDIGNHQGTMCGRCSVSFKLMPKSLASLNCSEMRAAGHGVESQFQIPVPVDDFMQKSHSTDQLFNRQNFPSFSFDPAQDGSIKPPMRKKKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADQKSIKLRFCSLKECENHIHNVDSPCAHTRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTAAHDMELSFIEPGQSSQH 471
M NGLP+L RVKLTDLIA+EG+PSD Y+LS++TLSQSLA YSAAIIQLP DGALL CLESAR YF+ KP YPS+D+ HI+DSREWCKTSGY AD +LW E+YDYRPGLT T P+++ E PP+GL+DIF+LLGKAARDILDAIS+YLNLRS AFTEILDNVPLRN +ISSSVLSV CH RPSFQG QHH+LTTQED LVMF+D EHQVDKSL+S+IKSDKAGLH+RD+NGRWVLVDGDLGP+EAI+YPGLALY ATAGYVSPAL+RTDI + G M GRCSVS+KLMPKS+ SLNCSEMRAAGHGVE+QFQIPV VDDFMQ+SHS DQLFNR +FPSFSF AQ+GSIKP M++KKN++RCKPLPPSKRLRLEAQRVLKERVQDIAD+K IKLRFCSLKECE+HIH +DSPC + R+EIGWP GVPFVHPHDLPNKAKIGFLETYEPGWTA HDMEL+ IE GQSSQH
Sbjct: 1 MAGNGLPSLGRVKLTDLIASEGIPSDTYKLSVSTLSQSLAQYSAAIIQLPPTDGALLRCCLESARPYFNQKPPYPSSDMIHIDDSREWCKTSGYTADPQLWQESYDYRPGLTSTEPNNDIELPPSGLTDIFMLLGKAARDILDAISFYLNLRSCAFTEILDNVPLRNREISSSVLSVGCHARPSFQGAQHHNLTTQEDGQLVMFTDHEHQVDKSLVSIIKSDKAGLHIRDFNGRWVLVDGDLGPQEAIMYPGLALYHATAGYVSPALHRTDINSLHGGMYGRCSVSYKLMPKSMTSLNCSEMRAAGHGVEAQFQIPVSVDDFMQRSHSLDQLFNRNSFPSFSFPTAQEGSIKPLMKRKKNSTRCKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCSLKECESHIHTLDSPCGNIRLEIGWPAGVPFVHPHDLPNKAKIGFLETYEPGWTANHDMELTLIETGQSSQH 471
BLAST of XM_017387822.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QCX7 ((Protein SCARECROW like {ECO:0000313|EMBL:PSS05981.1}) (Fragment))
HSP 1 Score: 796.193 bits (2055), Expect = 0.000e+0
Identity = 372/474 (78.48%), Postives = 424/474 (89.45%), Query Frame = 0
Match: A0A2R6QCX7 ((Protein SCARECROW like {ECO:0000313|EMBL:PSS05981.1}) (Fragment))
HSP 1 Score: 796.193 bits (2055), Expect = 0.000e+0
Identity = 372/474 (78.48%), Postives = 424/474 (89.45%), Query Frame = 0
Query: 1 MDSNGLPTLARVKLTDLIATEGLPSDAYRLSIATLSQSLAHYSAAIIQLPGGDGALLNSCLESARLYFHHKPSYPSADISHINDSREWCKTSGYYADTRLWLETYDYRPGLTPTGPDSEFEFPPAGLSDIFVLLGKAARDILDAISYYLNLRSSAFTEILDNVPLRNSDISSSVLSVSCHGRPSFQGEQHHSLTTQEDDHLVMFSDPEHQVDKSLLSLIKSDKAGLHVRDYNGRWVLVDGDLGPEEAIIYPGLALYQATAGYVSPALYRTDIGNHQGTMCGRCSVSFKLMPKSLASLNCSEMRAAGHGVESQFQIPVPVDDFMQKSHSTDQLFNRQNFPSFSFDPAQDGSIKPPMRKKKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADQKSIKLRFCSLKECENHIHNVDSPCAHTRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTAAHDMELSFIEPGQSSQHTAN 474
M NGLP+L RVKL+DLI +EGLPSD+Y+LS++TLSQSLA YSAAIIQL D ALL S LESARLYF+ +PSYP++D+ H NDSREWCKTSGYY+D +LW ETYD+RPGLTPT P++E EFPPAGL DIF ++GKAARDILDAIS+YLNLRSSAFTEILDNVP+RN +ISSSVLS+ CH RPSFQG QHH+LTTQED LVMFS+ EHQVDKSL+SL+KSDKAGL++RD++G WVLVDGDLGP+EAI+YPGLALYQATAGYVSPALYRT+IGN +M GRCS+ FKLMPKS+ SLNCSEMRAAGHGVE QFQIPVPVDDFMQ+SH TDQLFNR NFPSF+F AQDGS+KP +R++KNN RCKPLPPSKRLRLEAQRVLK+RVQDIAD+K IKLRFC LKECE+HIH +DSPCA+ R+EIGWP GVPFVHPHDLPNKAKIGFLE YEPGWTA +DMELS I+PGQ SQH+AN
Sbjct: 1 MAGNGLPSLGRVKLSDLIPSEGLPSDSYKLSVSTLSQSLAQYSAAIIQLAPTDAALLRSSLESARLYFNQRPSYPTSDMIHTNDSREWCKTSGYYSDPQLWQETYDFRPGLTPTEPNNEMEFPPAGLVDIFSIIGKAARDILDAISFYLNLRSSAFTEILDNVPMRNREISSSVLSICCHARPSFQGAQHHNLTTQEDGQLVMFSEHEHQVDKSLISLVKSDKAGLYIRDFHGHWVLVDGDLGPQEAIVYPGLALYQATAGYVSPALYRTEIGNLPSSMFGRCSLVFKLMPKSMTSLNCSEMRAAGHGVEPQFQIPVPVDDFMQRSHPTDQLFNRHNFPSFNFPVAQDGSMKPLLRRRKNNGRCKPLPPSKRLRLEAQRVLKQRVQDIADKKGIKLRFCPLKECESHIHTLDSPCANIRLEIGWPTGVPFVHPHDLPNKAKIGFLEAYEPGWTATNDMELSLIDPGQPSQHSAN 474
BLAST of XM_017387822.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DSP0 ((2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein {ECO:0000313|EMBL:GFS41414.1}))
HSP 1 Score: 786.949 bits (2031), Expect = 0.000e+0
Identity = 366/467 (78.37%), Postives = 418/467 (89.51%), Query Frame = 0
Match: A0A7J0DSP0 ((2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein {ECO:0000313|EMBL:GFS41414.1}))
HSP 1 Score: 786.949 bits (2031), Expect = 0.000e+0
Identity = 366/467 (78.37%), Postives = 418/467 (89.51%), Query Frame = 0
Query: 1 MDSNGLPTLARVKLTDLIATEGLPSDAYRLSIATLSQSLAHYSAAIIQLPGGDGALLNSCLESARLYFHHKPSYPSADISHINDSREWCKTSGYYADTRLWLETYDYRPGLTPTGPDSEFEFPPAGLSDIFVLLGKAARDILDAISYYLNLRSSAFTEILDNVPLRNSDISSSVLSVSCHGRPSFQGEQHHSLTTQEDDHLVMFSDPEHQVDKSLLSLIKSDKAGLHVRDYNGRWVLVDGDLGPEEAIIYPGLALYQATAGYVSPALYRTDIGNHQGTMCGRCSVSFKLMPKSLASLNCSEMRAAGHGVESQFQIPVPVDDFMQKSHSTDQLFNRQNFPSFSFDPAQDGSIKPPMRKKKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADQKSIKLRFCSLKECENHIHNVDSPCAHTRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTAAHDMELSFIEPGQ 467
M NGLP+L RVKL+DLI +EGLPSD+Y+LS++TLSQSLA YSAAIIQL D ALL S LESARLYF+ +PSYP++D+ H NDSREWCKTSGYY+D +LW ETYD+RPGLTPT P++E EFPPAGL DIF ++GKAARDILDAIS+YLNLRSS FTEILDNVP+RN +ISSSVLS+ CH RPSFQG QHH+LTT+ED LVMFS+ EHQVDKSL+SL+KSDKAGL++RD++G WVLVDGDLGP+EAI+YPGLALYQATAGYVSPALYRT+IGN +M GRCS+ FKLMPKS+ SLNCSEMRAAGHGVE QFQIPVPVDDFMQ+SH TDQLFNR NFPSF+F AQDGS+KP +R++KNN RCKPLPPSKRLRLEAQRVLK+RVQDIAD+K IKLRFC LKECE+HIH +DSPCA+ R+EIGWPPGVPFVHPHDLPNKAKIGFLE YEPGWTA +DMELS I+PGQ
Sbjct: 1 MAGNGLPSLGRVKLSDLIPSEGLPSDSYKLSVSTLSQSLAQYSAAIIQLAPTDAALLRSSLESARLYFNQRPSYPTSDMIHTNDSREWCKTSGYYSDPQLWQETYDFRPGLTPTEPNNEMEFPPAGLVDIFSIIGKAARDILDAISFYLNLRSSPFTEILDNVPMRNREISSSVLSICCHARPSFQGAQHHNLTTEEDGQLVMFSEHEHQVDKSLISLVKSDKAGLYIRDFHGHWVLVDGDLGPQEAIVYPGLALYQATAGYVSPALYRTEIGNLPSSMFGRCSLVFKLMPKSMTSLNCSEMRAAGHGVEPQFQIPVPVDDFMQRSHPTDQLFNRHNFPSFNFPVAQDGSMKPLLRRRKNNGRCKPLPPSKRLRLEAQRVLKQRVQDIADKKGIKLRFCPLKECESHIHTLDSPCANIRLEIGWPPGVPFVHPHDLPNKAKIGFLEAYEPGWTATNDMELSLIDPGQ 467
BLAST of XM_017387822.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3KX87 ((Uncharacterized protein {ECO:0000313|EMBL:OMP11705.1}))
HSP 1 Score: 786.563 bits (2030), Expect = 0.000e+0
Identity = 366/474 (77.22%), Postives = 417/474 (87.97%), Query Frame = 0
Match: A0A1R3KX87 ((Uncharacterized protein {ECO:0000313|EMBL:OMP11705.1}))
HSP 1 Score: 786.563 bits (2030), Expect = 0.000e+0
Identity = 366/474 (77.22%), Postives = 417/474 (87.97%), Query Frame = 0
Query: 1 MDSNGLPTLARVKLTDLIATEGLPSDAYRLSIATLSQSLAHYSAAIIQLPGGDGALLNSCLESARLYFHHKPSYPSADISHINDSREWCKTSGYYADTRLWLETYDYRPGLTPTGPDSEFEFPPAGLSDIFVLLGKAARDILDAISYYLNLRSSAFTEILDNVPLRNSDISSSVLSVSCHGRPSFQGEQHHSLTTQEDDHLVMFSDPEHQVDKSLLSLIKSDKAGLHVRDYNGRWVLVDGDLGPEEAIIYPGLALYQATAGYVSPALYRTDIGNHQGTMCGRCSVSFKLMPKSLASLNCSEMRAAGHGVESQFQIPVPVDDFMQKSHSTDQLFNRQNFPSFSFDPAQDGSIKPPMRKKKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADQKSIKLRFCSLKECENHIHNVDSPCAHTRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWTAAHDMELSFIEPGQSSQHTAN 474
M NGLP+L RVKLTDLI +EGLPSD+Y+LSI+TLSQS A YSAAIIQ P GDGALL S L+SARLYF + +YPSAD+ H NDSREWCKTSGYYAD + W ETYDYRPGLTPT P + EFPP GL DIF LLGKAARDILDAISYYLNLRSS FTEILDNVPLR+ +ISSSVLSV CH RPSFQG QHH+LTTQ+D L+MF D EHQ DKSL+S++KSDKAGLH+RD++GRW+LVDGDLGP+EA+++PGLALYQATAGYV+PAL+RT+I N G M GRCS++FKLMPKS+ SL+CSEMRAAGHGVE+QFQ+PVPVDDFMQ+SH TDQLF+R F +F+F PAQDGS+KP MR++KNN+RCKPLPPSKRLRLEAQRVLKERVQ+IAD+K IKLRFC+LKECENHIH +DSPCA+ RMEIGWP GVPFVHPHDLPNKAKIGFLE YEPGWTA HDMELS EP Q+SQ +AN
Sbjct: 1 MAGNGLPSLGRVKLTDLIPSEGLPSDSYKLSISTLSQSFAQYSAAIIQFPAGDGALLRSGLDSARLYFQQRAAYPSADMIHSNDSREWCKTSGYYADPQQWQETYDYRPGLTPTEPSNGMEFPPGGLPDIFALLGKAARDILDAISYYLNLRSSPFTEILDNVPLRSREISSSVLSVCCHARPSFQGAQHHNLTTQDDGQLIMFPDHEHQADKSLISVVKSDKAGLHIRDFHGRWILVDGDLGPQEAVVFPGLALYQATAGYVNPALHRTEINNIPGNMYGRCSLAFKLMPKSMTSLSCSEMRAAGHGVEAQFQLPVPVDDFMQRSHPTDQLFSRNTFQTFNFPPAQDGSMKPLMRRRKNNTRCKPLPPSKRLRLEAQRVLKERVQEIADKKGIKLRFCNLKECENHIHALDSPCANIRMEIGWPHGVPFVHPHDLPNKAKIGFLEAYEPGWTATHDMELSLTEPAQTSQQSAN 474
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5A8C8 | E-Value: 0.000e+0, PID: 81.65 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8527... [more] |
| A0A5J5A0I1 | E-Value: 0.000e+0, PID: 80.59 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8523... [more] |
| A0A103YJD3 | E-Value: 0.000e+0, PID: 81.22 | (Uncharacterized protein {ECO:0000313|EMBL:KVI1022... [more] |
| A0A7J7H8S4 | E-Value: 0.000e+0, PID: 80.17 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5948... [more] |
| D7SWX7 | E-Value: 0.000e+0, PID: 79.96 | (Uncharacterized protein {ECO:0000313|EMBL:CBI2177... [more] |
| A0A2J6MJ55 | E-Value: 0.000e+0, PID: 80.04 | (Uncharacterized protein {ECO:0000313|EMBL:PLY9957... [more] |
| A0A6S7PMN4 | E-Value: 0.000e+0, PID: 79.83 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4107... [more] |
| A0A2R6QCX7 | E-Value: 0.000e+0, PID: 78.48 | (Protein SCARECROW like {ECO:0000313|EMBL:PSS05981... [more] |
| A0A7J0DSP0 | E-Value: 0.000e+0, PID: 78.37 | (2-oxoglutarate (2OG) and Fe(II)-dependent oxygena... [more] |
| A0A1R3KX87 | E-Value: 0.000e+0, PID: 77.22 | (Uncharacterized protein {ECO:0000313|EMBL:OMP1170... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |