XM_017386475.1

Resource Type: 
Polypeptide
Name: 
XM_017386475.1
Identifier: 
XM_017386475.1-protein
Sequence: 
MQHEVLLSSLLQVEELKQLEPNDATKQKMMAILQRFHTQEEIDNSDELLD
STPGDVTDSNFSEVVIQKILSGGEIQVEDLSEDEKKRFQRAVVSGELSRM
IEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKSEIVENDQSLHI
PPGPETPLPPVSKLSATAPSPLLAVHLVDIIYSYCFTLRLYNGEWLTDPI
GSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLRHVGGLQFGLGL
LDDVVCLLSIGGTALVCLLCDFQRMIQAAEKELKSEKPRKSRRVEAKGNL
KSAERKVYFMMCWVHEQHEDTWFSIASMVEAEKSANLACTGNRKDTLSVQ
ERARPRGKMLIEEV
Sequence Length: 
364
Sequence Checksum: 
666111c8ef69c6331f7ecdd38ab5b093
View location in JBrowse: 
DCARv2_Chr3:9637234..9639869-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017386475.1, derives from mRNA, XM_017386475.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017386475.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017386475.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GCQ1 (HIT-type domain-containing protein {ECO:0000259|PROSITE:PS51083})

HSP 1 Score: 459.914 bits (1182), Expect = 1.620e-159
Identity = 233/352 (66.19%), Postives = 285/352 (80.97%), Query Frame = 0
 
Query:   13 VEELKQLEPNDATKQKMMAILQRFHTQEEIDNSDELLDSTPGDVTDSNFSEVVIQKILSGGEIQVEDLSEDEKKRFQRAVVSGELSRMIEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKSEIVENDQSLHIPPGPETPLPPVSKLSATAPSPLLAVHLVDIIYSYCFTLRLYNGEWLTDPIGSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLRHVGGLQFGLGLLDDVVCLLSIGGTALVCLLCDFQRMIQAAEKELKSEKPRKSRRVEAKGNLKSAERKVYFMMCWVHEQHEDTWFSIASMVEAEKSANLACTGNRKDTLSVQERARPRGKMLIEEV 364
            VEE++QL+P+D  KQKM+ IL+RFH++EE+DN DE          DS  SE  IQKILSG EI V+DLS +EKK FQRAV SGELS++IEPWEPWWLKPSA+TI LS +G+RLVQP+ + E++AS  + + +DQS  IPPGPETPLPP+SKLS+T PSPLLAVHLVDIIYSYCFTLRLYNG+W +DPIGS    LSVS VLGQGG+PETV EAVSHCLEQTCSP  RH+GGLQFGLG+LDDV+ LLS+GG+ALVCLLCD QR+IQAAE ELKSEKPRKS++ E +G LK AERKV+F++CWVHEQ  + W S+A++V+AEKS+ +   G++   L ++ +   RGK LIEEV
Sbjct:   67 VEEMRQLQPDDENKQKMLDILKRFHSEEEMDNMDE---------DDSTLSEETIQKILSGYEISVDDLSAEEKKHFQRAVASGELSKLIEPWEPWWLKPSARTISLSREGTRLVQPLAKQETVASPPDDLGSDQSYEIPPGPETPLPPISKLSSTEPSPLLAVHLVDIIYSYCFTLRLYNGDWQSDPIGSATVVLSVSSVLGQGGQPETVLEAVSHCLEQTCSPAFRHMGGLQFGLGVLDDVISLLSLGGSALVCLLCDLQRLIQAAEGELKSEKPRKSKKSEMRGKLKLAERKVFFILCWVHEQPGEAWSSLAAIVKAEKSSTMEFGGSKGVNLRMESKVETRGKALIEEV 409
[Close]
BLAST of XM_017386475.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YGC7 ((Putative zinc finger HIT domain-containing protein 2 isoform X1 {ECO:0000313|EMBL:MPA30820.1}))

HSP 1 Score: 443.351 bits (1139), Expect = 5.933e-153
Identity = 212/352 (60.23%), Postives = 274/352 (77.84%), Query Frame = 0
 
Query:   13 VEELKQLEPNDATKQKMMAILQRFHTQEEIDNSDELLDSTPGDVTDSNFSEVVIQKILSGGEIQVEDLSEDEKKRFQRAVVSGELSRMIEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKSEIVENDQSLHIPPGPETPLPPVSKLSATAPSPLLAVHLVDIIYSYCFTLRLYNGEWLTDPIGSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLRHVGGLQFGLGLLDDVVCLLSIGGTALVCLLCDFQRMIQAAEKELKSEKPRKSRRVEAKGNLKSAERKVYFMMCWVHEQHEDTWFSIASMVEAEKSANLACTGNRKDTLSVQERARPRGKMLIEEV 364
            VEEL+QL+P+D TKQKM+ IL+RFH++E++++ DE          DS  SE  I+KILSGG+I  +DLS + KK FQRAV SGELS++IEPW+PWWLKPSA+TI LS++G++L+QP+V+ E++ S  +  E+DQ   IP GPETPLPPV KLS+T PSPLLAV LVDIIYSYCFTLRLYNG+W +D +GS M  LS+S VLGQGG+PETV EAVS CLEQTCSP  R +GGLQFG GLLDDV+ LL +GG+A+VCLLCD  R IQAAE+ELK EKP++ +RVE    L+ AERK+++MMCWVHEQ  + W S+A++V  EK + + C GN   T +++++A   GK+LIEE+
Sbjct:   67 VEELRQLQPDDETKQKMLDILKRFHSEEDMNSMDE---------DDSTSSEETIRKILSGGQISYDDLSAEGKKHFQRAVASGELSKLIEPWDPWWLKPSARTISLSQEGTQLIQPLVKQETVISPQDDTESDQLHDIPRGPETPLPPVRKLSSTEPSPLLAVSLVDIIYSYCFTLRLYNGDWQSDAVGSAMVILSLSSVLGQGGQPETVLEAVSQCLEQTCSPAFRDMGGLQFGFGLLDDVISLLYLGGSAIVCLLCDLWRFIQAAERELKLEKPKRLKRVEIGSKLRLAERKIFYMMCWVHEQPGEAWSSLAAIVRVEKDSAMDCGGNGSGTSTMEDKA-TMGKILIEEI 408
[Close]
BLAST of XM_017386475.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6R588 (HIT-type domain-containing protein {ECO:0000259|PROSITE:PS51083})

HSP 1 Score: 435.647 bits (1119), Expect = 6.461e-150
Identity = 212/352 (60.23%), Postives = 273/352 (77.56%), Query Frame = 0
 
Query:   13 VEELKQLEPNDATKQKMMAILQRFHTQEEIDNSDELLDSTPGDVTDSNFSEVVIQKILSGGEIQVEDLSEDEKKRFQRAVVSGELSRMIEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKSEIVENDQSLHIPPGPETPLPPVSKLSATAPSPLLAVHLVDIIYSYCFTLRLYNGEWLTDPIGSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLRHVGGLQFGLGLLDDVVCLLSIGGTALVCLLCDFQRMIQAAEKELKSEKPRKSRRVEAKGNLKSAERKVYFMMCWVHEQHEDTWFSIASMVEAEKSANLACTGNRKDTLSVQERARPRGKMLIEEV 364
            V EL Q++P+D TKQKM+ IL+R H++EE D+ DE  D T      +  S+  +QKILSG ++  +DLS +EKK+FQRA+ SGELS+MIEPW+PWWLKPSA+TI LS++G++LVQP+ + E++ S  E +E++ S  IP GPE+PLPPVSKLS+T PSP+LAVHLVDI+YSYCFTLRLYNG+W +D +GS M  LSVS VLGQGG+PETV EA+SHCLEQTCSP  R +GGLQ GL L+DDV+ LLS+GG ALV  LCD QR+IQA E+ELKSEKP+ SRRVE +  LK AERK+YF+MCWVHEQ  + W S+A+MV  EKS+ +   G+ K  + +  +A  RG+ LIEE+
Sbjct:   67 VGELGQMQPDDETKQKMLDILKRLHSEEETDSMDE--DDT------TTLSDETVQKILSGDQVCFDDLSAEEKKQFQRALASGELSKMIEPWDPWWLKPSARTISLSKEGTQLVQPLDKKEALVSLEEDLESNPSSEIPHGPESPLPPVSKLSSTEPSPMLAVHLVDILYSYCFTLRLYNGDWQSDAVGSAMVVLSVSAVLGQGGQPETVLEALSHCLEQTCSPAYRQMGGLQLGLILIDDVISLLSLGGPALVYSLCDLQRLIQAGERELKSEKPKNSRRVEIRSKLKLAERKIYFIMCWVHEQPGEAWSSLAAMVGGEKSSAMDYEGS-KQPVKMSNKAETRGRALIEEI 409
[Close]
BLAST of XM_017386475.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1VRD4 ((Zinc finger HIT domain-containing protein 2 {ECO:0000313|EMBL:KAB1215522.1}))

HSP 1 Score: 432.565 bits (1111), Expect = 1.928e-148
Identity = 204/352 (57.95%), Postives = 265/352 (75.28%), Query Frame = 0
 
Query:   13 VEELKQLEPNDATKQKMMAILQRFHTQEEIDNSDELLDSTPGDVTDSNFSEVVIQKILSGGEIQVEDLSEDEKKRFQRAVVSGELSRMIEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKSEIVENDQSLHIPPGPETPLPPVSKLSATAPSPLLAVHLVDIIYSYCFTLRLYNGEWLTDPIGSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLRHVGGLQFGLGLLDDVVCLLSIGGTALVCLLCDFQRMIQAAEKELKSEKPRKSRRVEAKGNLKSAERKVYFMMCWVHEQHEDTWFSIASMVEAEKSANLACTGNRKDTLSVQERARPRGKMLIEEV 364
            VEEL+Q++ +D TK+KMM IL++FH++EE D+ DE          DS  SE  +QKI SG ++  +DL+ +EKKRFQRA+ SGELS+MI+PW+PWWLKPSA+T+ LS  G++LVQP+ + E+  S  E +E+DQ    PPGPE PLP V KLS+T PSP+LAVHLVDI+Y+YCFTLRLYNG+W +D IG+ M  LSVS +L QGG+PETV EA+SHCLEQ CSP  RH+GGLQFGL L+DDV+ L S+GG ALVC LCD QR+IQA E+ELKSEKP+KSR VE +  LK AERK+YF++CWVHEQ  +TW S+A+++ AEK + +   G ++       +  PR K LIEE+
Sbjct:   84 VEELQQMQSDDGTKRKMMDILKQFHSEEETDSMDE---------DDSTLSEETVQKIFSGDQVSFDDLTAEEKKRFQRALASGELSKMIKPWDPWWLKPSARTLSLSRDGTQLVQPLDKQEASTSLQEDLESDQLTEHPPGPECPLPAVGKLSSTEPSPMLAVHLVDIVYTYCFTLRLYNGDWQSDAIGAAMVVLSVSSILDQGGQPETVLEALSHCLEQICSPAYRHMGGLQFGLVLIDDVISLFSLGGPALVCSLCDMQRLIQAGERELKSEKPKKSRWVEIRSKLKLAERKIYFIVCWVHEQPGETWSSLAAILGAEKCSAMDYGGRKQPVKMNNSKVEPRDKFLIEEI 426
[Close]
BLAST of XM_017386475.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EQL4 (BHLH domain-containing protein {ECO:0000259|PROSITE:PS50888})

HSP 1 Score: 454.136 bits (1167), Expect = 5.799e-148
Identity = 231/352 (65.62%), Postives = 283/352 (80.40%), Query Frame = 0
 
Query:   13 VEELKQLEPNDATKQKMMAILQRFHTQEEIDNSDELLDSTPGDVTDSNFSEVVIQKILSGGEIQVEDLSEDEKKRFQRAVVSGELSRMIEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKSEIVENDQSLHIPPGPETPLPPVSKLSATAPSPLLAVHLVDIIYSYCFTLRLYNGEWLTDPIGSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLRHVGGLQFGLGLLDDVVCLLSIGGTALVCLLCDFQRMIQAAEKELKSEKPRKSRRVEAKGNLKSAERKVYFMMCWVHEQHEDTWFSIASMVEAEKSANLACTGNRKDTLSVQERARPRGKMLIEEV 364
            VEE++QL+P+D  KQKM+ IL+RFH++EE+DN DE          DS  SE  IQKILSG EI V+DLS +EKK FQRAV SGELS++IEPWEPWWLK SA+TI LS +G+RLVQP+ + E++AS  + + +DQS  IPPGPETPLPP+SKLS+T PSPLLAVHLVDIIYSYCFTLRLYNG+W +DPIGS    LSVS VLGQGG+PETV EAVSHCLEQTCSP  RH+GGLQFGLG+LDDV+ LLS+GG+ALV LLCD QR+IQAAE ELKSEKPRKS++ E +G LK AERKV+F++CWVHEQ  + W S+A++V+AEKS+ +   G++   L ++ +   RGK LIEEV
Sbjct:  827 VEEIRQLQPDDENKQKMLDILKRFHSEEEMDNMDE---------DDSTLSEETIQKILSGYEISVDDLSAEEKKHFQRAVASGELSKLIEPWEPWWLKASARTISLSREGTRLVQPLAKQETVASPPDDLGSDQSYEIPPGPETPLPPISKLSSTEPSPLLAVHLVDIIYSYCFTLRLYNGDWQSDPIGSATVVLSVSSVLGQGGQPETVLEAVSHCLEQTCSPAFRHMGGLQFGLGVLDDVISLLSLGGSALVSLLCDLQRLIQAAEGELKSEKPRKSKKSEMRGKLKLAERKVFFILCWVHEQPGEAWSSLAAIVKAEKSSTMEFGGSKGVNLRMESKVETRGKALIEEV 1169
[Close]
BLAST of XM_017386475.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251VIN3 ((Putative HIT-type Zinc finger family protein {ECO:0000313|EMBL:OTG34561.1}))

HSP 1 Score: 429.869 bits (1104), Expect = 1.565e-147
Identity = 205/352 (58.24%), Postives = 262/352 (74.43%), Query Frame = 0
 
Query:   13 VEELKQLEPNDATKQKMMAILQRFHTQEEIDNSDELLDSTPGDVTDSNFSEVVIQKILSGGEIQVEDLSEDEKKRFQRAVVSGELSRMIEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKSEIVENDQSLHIPPGPETPLPPVSKLSATAPSPLLAVHLVDIIYSYCFTLRLYNGEWLTDPIGSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLRHVGGLQFGLGLLDDVVCLLSIGGTALVCLLCDFQRMIQAAEKELKSEKPRKSRRVEAKGNLKSAERKVYFMMCWVHEQHEDTWFSIASMVEAEKSANLACTGNRKDTLSVQERARPRGKMLIEEV 364
            +EE++QLEP D TKQKM+ IL+RFH++EE ++ D+  D +     +S  SE  IQKI+SG EI  +DLS +EKK FQRA+ SGELS++IEPWEPWWLKPSAKTI LS  G++ VQPI +HE   S       D +   PPGPET LPPV+KLS++ PSPLLA+HLVDI+YSYCFTLRLYNG+W +DP+ S    L+VSL LGQ G+PETVSEA+S+CLEQTCSP  RH+GG QFGLG++DDV  LLS+GG  L+C LCD  RM+ A  KE+K+EK R  +R E K  LKS ERKVYF++CWVHEQ ++ W S+A +V AEK+A +   GN K +   Q++   +GK++IEEV
Sbjct:   76 MEEMQQLEPGDDTKQKMLDILKRFHSEEEAESMDDDNDGS----AESALSEETIQKIMSGLEISFDDLSTEEKKHFQRAIASGELSKLIEPWEPWWLKPSAKTISLSRDGTQRVQPITKHEPDPS-------DLTYEFPPGPETALPPVNKLSSSEPSPLLAIHLVDILYSYCFTLRLYNGDWQSDPVDSATVVLTVSLALGQSGQPETVSEALSYCLEQTCSPAFRHMGGPQFGLGVIDDVASLLSLGGDGLICALCDLHRMLTAGLKEVKTEKVRNVKRTEMKAKLKSGERKVYFLICWVHEQPQEAWSSLADLVMAEKNATMGYMGNAKVSWKAQKKEDRKGKVIIEEV 416
[Close]
BLAST of XM_017386475.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1AA60 ((zinc finger HIT domain-containing protein 2 isoform X2 {ECO:0000313|RefSeq:XP_021283609.1}))

HSP 1 Score: 429.483 bits (1103), Expect = 1.674e-147
Identity = 212/352 (60.23%), Postives = 265/352 (75.28%), Query Frame = 0
 
Query:   13 VEELKQLEPNDATKQKMMAILQRFHTQEEIDNSDELLDSTPGDVTDSNFSEVVIQKILSGGEIQVEDLSEDEKKRFQRAVVSGELSRMIEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKSEIVENDQSLHIPPGPETPLPPVSKLSATAPSPLLAVHLVDIIYSYCFTLRLYNGEWLTDPIGSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLRHVGGLQFGLGLLDDVVCLLSIGGTALVCLLCDFQRMIQAAEKELKSEKPRKSRRVEAKGNLKSAERKVYFMMCWVHEQHEDTWFSIASMVEAEKSANLACTGNRKDTLSVQERARPRGKMLIEEV 364
            VEEL+QL+P+D  K+KM+ IL+RFH++EE    DE       D  DS  S+  IQKILSG E+  +DLS +EKKRFQ+AV SGELS+MIEPW+PWWL P+A TI LS  G+RLVQPI   E+     + +E++QS  IP GPETPLP + KL +T PSPLLAVHLVDI+YSYCFTLR+YNG+W +D IGS M  LS+S VLGQ G+PETV EA+S+CLEQTCSP  RH+GGLQFGL L+DDV  LLS+GG AL+C+L D QRMIQA E+ELKSEKPRK R+ E K  LK AERKV+F+MCWVHEQ  + W S+ +MV+AEKS+ +   G  K    ++ +A  +GK+LIEE+
Sbjct:   67 VEELRQLQPDDEIKRKMLEILKRFHSEEETHTVDE-------DDDDSTLSDETIQKILSGREVSFDDLSLEEKKRFQKAVASGELSKMIEPWDPWWLNPAAGTICLSRDGTRLVQPIANLEASVPPEDDLESNQSSGIPVGPETPLPSLRKLISTEPSPLLAVHLVDIVYSYCFTLRVYNGDWQSDAIGSAMVVLSISCVLGQAGQPETVREALSYCLEQTCSPAYRHIGGLQFGLVLVDDVATLLSLGGPALICMLFDLQRMIQAGEEELKSEKPRKLRKAEIKSKLKLAERKVHFIMCWVHEQPGEAWSSLGAMVKAEKSSFMD-YGGSKSFSKMENKAENKGKVLIEEM 410
[Close]
BLAST of XM_017386475.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1AA07 ((zinc finger HIT domain-containing protein 2 isoform X1 {ECO:0000313|RefSeq:XP_021283601.1}))

HSP 1 Score: 429.483 bits (1103), Expect = 1.770e-147
Identity = 212/352 (60.23%), Postives = 265/352 (75.28%), Query Frame = 0
 
Query:   13 VEELKQLEPNDATKQKMMAILQRFHTQEEIDNSDELLDSTPGDVTDSNFSEVVIQKILSGGEIQVEDLSEDEKKRFQRAVVSGELSRMIEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKSEIVENDQSLHIPPGPETPLPPVSKLSATAPSPLLAVHLVDIIYSYCFTLRLYNGEWLTDPIGSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLRHVGGLQFGLGLLDDVVCLLSIGGTALVCLLCDFQRMIQAAEKELKSEKPRKSRRVEAKGNLKSAERKVYFMMCWVHEQHEDTWFSIASMVEAEKSANLACTGNRKDTLSVQERARPRGKMLIEEV 364
            VEEL+QL+P+D  K+KM+ IL+RFH++EE    DE       D  DS  S+  IQKILSG E+  +DLS +EKKRFQ+AV SGELS+MIEPW+PWWL P+A TI LS  G+RLVQPI   E+     + +E++QS  IP GPETPLP + KL +T PSPLLAVHLVDI+YSYCFTLR+YNG+W +D IGS M  LS+S VLGQ G+PETV EA+S+CLEQTCSP  RH+GGLQFGL L+DDV  LLS+GG AL+C+L D QRMIQA E+ELKSEKPRK R+ E K  LK AERKV+F+MCWVHEQ  + W S+ +MV+AEKS+ +   G  K    ++ +A  +GK+LIEE+
Sbjct:   68 VEELRQLQPDDEIKRKMLEILKRFHSEEETHTVDE-------DDDDSTLSDETIQKILSGREVSFDDLSLEEKKRFQKAVASGELSKMIEPWDPWWLNPAAGTICLSRDGTRLVQPIANLEASVPPEDDLESNQSSGIPVGPETPLPSLRKLISTEPSPLLAVHLVDIVYSYCFTLRVYNGDWQSDAIGSAMVVLSISCVLGQAGQPETVREALSYCLEQTCSPAYRHIGGLQFGLVLVDDVATLLSLGGPALICMLFDLQRMIQAGEEELKSEKPRKLRKAEIKSKLKLAERKVHFIMCWVHEQPGEAWSSLGAMVKAEKSSFMD-YGGSKSFSKMENKAENKGKVLIEEM 411
[Close]
BLAST of XM_017386475.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YGC6 ((Putative zinc finger HIT domain-containing protein 2 isoform X1 {ECO:0000313|EMBL:MPA30821.1}))

HSP 1 Score: 429.098 bits (1102), Expect = 2.604e-147
Identity = 213/352 (60.51%), Postives = 274/352 (77.84%), Query Frame = 0
 
Query:   13 VEELKQLEPNDATKQKMMAILQRFHTQEEIDNSDELLDSTPGDVTDSNFSEVVIQKILSGGEIQVEDLSEDEKKRFQRAVVSGELSRMIEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKSEIVENDQSLHIPPGPETPLPPVSKLSATAPSPLLAVHLVDIIYSYCFTLRLYNGEWLTDPIGSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLRHVGGLQFGLGLLDDVVCLLSIGGTALVCLLCDFQRMIQAAEKELKSEKPRKSRRVEAKGNLKSAERKVYFMMCWVHEQHEDTWFSIASMVEAEKSANLACTGNRKDTLSVQERARPRGKMLIEEV 364
            VEEL+QL+P+D TKQKM+ IL+RFH++E++++ DE          DS  SE  I+KILSGG+I  +DLS + KK FQRAV SGELS++IEPW+PWWLKPSA+TI LS++G++L+QP+V+ E++ S  +  E+DQ   IP GPETPLPPV KLS+T PSPLLAV LVDIIYSYCFTLRLYNG+W +D +GS M  LS+S VLGQGG+PETV EAVS CLEQTCSP  R +GGLQFG GLLDDV+ LL +GG+A+VCLLCD  R IQAAE+ELK EKP+K +RVE    L+ AERK+++MMCWVHEQ  + W S+A++V  EK + + C GN   T +++++A   GK+LIEE+
Sbjct:   67 VEELRQLQPDDETKQKMLDILKRFHSEEDMNSMDE---------DDSTLSEETIRKILSGGQISYDDLSAEGKKHFQRAVASGELSKLIEPWDPWWLKPSARTISLSQEGTQLIQPLVKQETVISPQDDTESDQLHDIPRGPETPLPPVRKLSSTEPSPLLAVSLVDIIYSYCFTLRLYNGDWQSDAVGSAMVILSLSSVLGQGGQPETVLEAVSQCLEQTCSPAFRDMGGLQFGFGLLDDVISLLYLGGSAIVCLLCDLWRFIQAAERELKLEKPKKLKRVEIGSKLRLAERKIFYMMCWVHEQPGEAWSSLAAIVRVEKDSAMDCGGNGSGTSTMEDKA-TMGKILIEEI 408
[Close]
BLAST of XM_017386475.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061G415 ((HIT-type Zinc finger family protein {ECO:0000313|EMBL:EOY23937.1}))

HSP 1 Score: 428.713 bits (1101), Expect = 2.618e-147
Identity = 213/352 (60.51%), Postives = 263/352 (74.72%), Query Frame = 0
 
Query:   13 VEELKQLEPNDATKQKMMAILQRFHTQEEIDNSDELLDSTPGDVTDSNFSEVVIQKILSGGEIQVEDLSEDEKKRFQRAVVSGELSRMIEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKSEIVENDQSLHIPPGPETPLPPVSKLSATAPSPLLAVHLVDIIYSYCFTLRLYNGEWLTDPIGSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLRHVGGLQFGLGLLDDVVCLLSIGGTALVCLLCDFQRMIQAAEKELKSEKPRKSRRVEAKGNLKSAERKVYFMMCWVHEQHEDTWFSIASMVEAEKSANLACTGNRKDTLSVQERARPRGKMLIEEV 364
            VEEL+QL+P+D  K+KM+ IL+RFH++EE    DE       D  DS  S+  IQKILSG E+  +DLS +EKKRFQ+AV SGELS+MIEPW+PWWL P+A TI LS  G+RLVQPI   E+     + +E+++S  IP GPETPLP + KL +T PSPLLAVHLVDI+YSYCFTLR+YNGEW +D IGS M  LS+S VLGQ G+PETV EAVS+CLEQTCSP  RH+GGLQFGL L+DDV  LLS+GG AL+C+L D QRMIQA EKELKSEKPR  R+ E K  LK AERKV+F+MCWVHEQ  + W S+ +MV+AEKS+ +   G  K     + +A  +GK+LIEE+
Sbjct:   67 VEELRQLQPDDEIKRKMLEILKRFHSEEETHTLDE-------DDDDSTLSDETIQKILSGREVSFDDLSLEEKKRFQKAVASGELSKMIEPWDPWWLNPAAGTICLSRDGTRLVQPIANLEASVPPEDDLESNESSGIPVGPETPLPSLRKLISTEPSPLLAVHLVDIVYSYCFTLRVYNGEWQSDAIGSAMVVLSISCVLGQAGQPETVREAVSYCLEQTCSPAYRHIGGLQFGLALVDDVATLLSLGGPALICMLFDLQRMIQAGEKELKSEKPRMLRKAEIKSKLKLAERKVHFIMCWVHEQPGEAWSSLGAMVKAEKSSFMD-YGGSKSFSKRENKAENKGKVLIEEM 410
Match NameStatsDescription
A0A7J7GCQ1E-Value: 1.620e-159, PID: 66.19HIT-type domain-containing protein {ECO:0000259|PR... [more]
A0A5B6YGC7E-Value: 5.933e-153, PID: 60.23(Putative zinc finger HIT domain-containing protei... [more]
A0A5N6R588E-Value: 6.461e-150, PID: 60.23HIT-type domain-containing protein {ECO:0000259|PR... [more]
A0A6A1VRD4E-Value: 1.928e-148, PID: 57.95(Zinc finger HIT domain-containing protein 2 {ECO:... [more]
A0A4S4EQL4E-Value: 5.799e-148, PID: 65.63BHLH domain-containing protein {ECO:0000259|PROSIT... [more]
A0A251VIN3E-Value: 1.565e-147, PID: 58.24(Putative HIT-type Zinc finger family protein {ECO... [more]
A0A6J1AA60E-Value: 1.674e-147, PID: 60.23(zinc finger HIT domain-containing protein 2 isofo... [more]
A0A6J1AA07E-Value: 1.770e-147, PID: 60.23(zinc finger HIT domain-containing protein 2 isofo... [more]
A0A5B6YGC6E-Value: 2.604e-147, PID: 60.51(Putative zinc finger HIT domain-containing protei... [more]
A0A061G415E-Value: 2.618e-147, PID: 60.51(HIT-type Zinc finger family protein {ECO:0000313|... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.