MATLNLSPLSKTLINPTPLKPSTPLSCLSLSYPLQSLSFSLTQNLKPTRN
SSRTLIRAAVDGDYSAKRSNSSEPRETIMLPGCDYNHWLIVMEFPKDPAP
TREQMIDTYLETLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEEVSEKF
KGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPKQQRRSKY
ESKRYVRQRDGPPPERRKPKQATESPSG
| Relationships |
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| The polypeptide, XM_017382494.1, derives from mRNA, XM_017382494.1. |
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
Match: A0A2U1PAT9 ((Uncharacterized protein {ECO:0000313|EMBL:PWA82871.1}))
HSP 1 Score: 342.428 bits (877), Expect = 3.706e-118
Identity = 179/231 (77.49%), Postives = 196/231 (84.85%), Query Frame = 0
Query: 1 MATLNLSPLSKTLINPTPLKPSTPLSC-LSLSYPLQSLSFSLTQNLKPTRNSSRTLIRAAVDGDYSAKRSNSSEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLETLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEEVSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPKQQRRSKYESKRYVRQRDGPPPERRKPKQ---ATESPS 227
MATLNLS +SKTLINP KP P+S S PL + F + LK + L +AAVDGDYS++RS+SSEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYL TLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEE SEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPC YPTYQPK +++SKYESKRYVRQRDGPP E+++PKQ ++ESPS
Sbjct: 1 MATLNLSLISKTLINPIS-KPLNPISKPSSFINPLINSQFLIKPILKNSNRVKTHLTKAAVDGDYSSRRSSSSEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCQYPTYQPKPRKQSKYESKRYVRQRDGPPAEQKRPKQEAASSESPS 230
Match: A0A835D872 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8391442.1}))
HSP 1 Score: 340.117 bits (871), Expect = 4.608e-117
Identity = 173/240 (72.08%), Postives = 195/240 (81.25%), Query Frame = 0
Query: 1 MATLNLSPLSKTLINPTPLKP------STPLSC----LSLSYPLQ--SLSFSLTQNLKPTRNSSRTLIRAAVDGDYSAKRSNSSEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLETLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEEVSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPKQQRRSKYESKRYVRQRDGPPPERRKPKQATESPSG 228
MATLN + L KTLI+ + P S P+S +SL P + S+S+ L + SR IRAAVDG+YS+KRS+S+EPRETI+LPGCDYNHWLIVMEFPKDPAPTREQMIDTYL TLATV+GSMEEAKKNMYAFSTTTYTGFQCTVSEE SEKFKGLPGVLWVLPDSYIDVKNKDYGGDKY+NGEIIPC YPTYQPKQ+ SKY+S+RY R+RDGPPPERR+PK+AT S S
Sbjct: 1 MATLNATLLPKTLISSSSHFPESNPRSSVPISASISRVSLISPFRFNSVSYFSASPLSSSPPVSRRAIRAAVDGEYSSKRSSSNEPRETILLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVVGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPCKYPTYQPKQRSGSKYDSRRYERRRDGPPPERRRPKEATRSDSA 240
Match: A0A2J6JHR3 ((Uncharacterized protein {ECO:0000313|EMBL:PLY62342.1}))
HSP 1 Score: 338.961 bits (868), Expect = 9.176e-117
Identity = 174/224 (77.68%), Postives = 189/224 (84.38%), Query Frame = 0
Query: 1 MATLNLSPLSKTLINPTPLKPSTPLSCLSLSYPL---QSLSFSLTQNLKPTRNSSRTLIRAAVDGDYSAKRSNSSEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLETLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEEVSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPKQQRRSKYESKRYVRQRDGPPPERRKPKQ 221
MATLN S LSKTL +P S P S ++ + P QSL TQ + + IRAAVDGDYS++RS+SSEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYL TLA+VLGSMEEAKKNMYAFSTTTYTGFQCTVSEE SEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPC YPTYQPK +++SKYESKRYVRQRDGPPPE+R+PKQ
Sbjct: 1 MATLNFSILSKTLTPKSPNPISKPSSFITSNLPFVNSQSLKPIFTQTIPKSSRVRTHQIRAAVDGDYSSRRSSSSEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLASVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCQYPTYQPKPRKQSKYESKRYVRQRDGPPPEQRRPKQ 224
Match: M1BYQ1 ((DAG protein, chloroplastic {ECO:0000313|EnsemblPlants:PGSC0003DMT400055883}))
HSP 1 Score: 335.88 bits (860), Expect = 1.179e-115
Identity = 167/229 (72.93%), Postives = 187/229 (81.66%), Query Frame = 0
Query: 1 MATLNLSPLSKTLINPTPLK--PSTPLSCLSLSYPLQSLSFSLTQNLKPTRNSSRTLIRAAVDGDYSAKRSNSSEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLETLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEEVSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPKQQRRSKYESKRYVRQRDGPPPERRKPKQATESPS 227
MA LNL SKTL + + P TP LSLSYP + S S ++ P +NS ++RA DG+YS+KRS++S+ RETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYL+TLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEE SEKFKGLPGVLWVLPDSYIDVKNKDYGGDKY+NGEIIPC YPTYQPKQ R++ +SK YVR+RDGPPPER + A ES S
Sbjct: 1 MAALNLPSFSKTLNPNSQFQNLPKTPTFLLSLSYPFLTTSLS---SIPPAKNSRFPVVRAISDGEYSSKRSSNSDERETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLDTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPCQYPTYQPKQANRTRSKSKAYVRRRDGPPPERTRQAAAPESSS 226
Match: A0A7J7GV21 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5944287.1}))
HSP 1 Score: 332.028 bits (850), Expect = 3.850e-114
Identity = 174/234 (74.36%), Postives = 189/234 (80.77%), Query Frame = 0
Query: 1 MATLNLSPLSKTL-INPTPLKPSTPLSCLSLSYPLQSLSFSLTQNLKPTRNS--SRTLIRAAVDGDYSAKRSNSSEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLETLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEEVSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPKQQRRSKYESKRYVRQRDGPPPERRKPKQ---ATESPSG 228
MATLNLS SKTL T T L+ S P +S + +P N SRT RAA+DGDYS+KRS+S++PRET+MLPGCDYNHWLIVMEFPKDPAPTREQMI+TYL TLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEE SEKFKGLPGVLWVLPDSYIDVKNKDYGGDKY+NGEIIPC YPTYQPKQ RSKYESKRYVRQRDG P ERR+P Q ++ES SG
Sbjct: 1 MATLNLSLFSKTLKTQYTTYLNPTTTLLLTHSGPFRSWA-------RPHSNPTLSRTRTRAALDGDYSSKRSSSNDPRETLMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLTTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPCKYPTYQPKQSNRSKYESKRYVRQRDGRPAERRRPTQEATSSESTSG 227
Match: A0A251S0B1 ((Putative DAG protein {ECO:0000313|EMBL:OTF91999.1}))
HSP 1 Score: 331.643 bits (849), Expect = 6.315e-114
Identity = 176/235 (74.89%), Postives = 194/235 (82.55%), Query Frame = 0
Query: 1 MATLNLSPLSKTLI--NPTPLKPSTPLSCLSLSYPLQSLSFSLTQNLKP-----TRNSSRT---LIRAAVDGDYSAKRSNSSEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLETLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEEVSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPKQQRRSKYESKRYVRQRDGPPPERRKPKQATES 225
MATLN S LSKTL +PTP KPS+ ++ +L F+ +Q+ KP NS+R RAAVDGDYS++RS+SSEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYL TLATVLGSMEEAKKNMYAFSTTTYTGFQCTV EE SEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPC YPTYQPK +++SKYESKRYVRQRDGPP E+++PKQ S
Sbjct: 1 MATLNFSILSKTLTPKSPTP-KPSSLITS--------NLPFTNSQSFKPILTRPVSNSNRVRTHQTRAAVDGDYSSRRSSSSEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCQYPTYQPKPKKQSKYESKRYVRQRDGPPAEQKRPKQEATS 226
Match: A0A3Q7F6N8 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g079770.3.1}))
HSP 1 Score: 329.717 bits (844), Expect = 2.852e-113
Identity = 165/229 (72.05%), Postives = 186/229 (81.22%), Query Frame = 0
Query: 1 MATLNLSPLSKTLINPTPLK--PSTPLSCLSLSYPLQSLSFSLTQNLKPTRNSSRTLIRAAVDGDYSAKRSNSSEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLETLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEEVSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPKQQRRSKYESKRYVRQRDGPPPERRKPKQATESPS 227
MA L L SKTL + + P TP LSLSYP + S S ++ P+ +S ++RA DG+YS+KRS++S+ RETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYL+TLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEE SEKFKGLPGVLWVLPDSYIDVKNKDYGGDKY+NGEIIPC YPTYQPKQ R++ +SK YVR+RDGPPPER + A ES S
Sbjct: 1 MAALKLPSFSKTLNPNSQFQNLPKTPTFLLSLSYPFLTTSLS---SIPPSTSSRFPVVRAISDGEYSSKRSSNSDERETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLDTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPCQYPTYQPKQANRTRSKSKAYVRRRDGPPPERTRRAAAPESSS 226
Match: A0A103XU25 ((Uncharacterized protein {ECO:0000313|EMBL:KVH96903.1}))
HSP 1 Score: 329.717 bits (844), Expect = 3.691e-113
Identity = 181/238 (76.05%), Postives = 199/238 (83.61%), Query Frame = 0
Query: 1 MATLNLSPLSKTLINPTPLKPSTPLSCLSLSYPLQSLSFSLTQNLKP--TR---NSSR---TLIRAAVDGDYSAKRSNSSEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLETLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEEVSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPKQQRRSKYESKRYVRQRDGPPPERRKPKQ---ATESPS 227
MATLN S LSKTL PT KPS+ ++ +L F +Q+LKP TR NS R +AAVDGDYS++RS+SSEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMI+TYL TLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEE SEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPC YPTYQPK +++SKYESKRYVRQRDGPPPE+R+ KQ ++ESPS
Sbjct: 1 MATLNFSLLSKTL-TPTS-KPSSIVTS--------NLPFIHSQSLKPIFTRTIPNSIRLRTHRTKAAVDGDYSSRRSSSSEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCQYPTYQPKPRKQSKYESKRYVRQRDGPPPEQRRAKQEAASSESPS 228
Match: A0A5B6YHE3 ((Uncharacterized protein {ECO:0000313|EMBL:MPA30826.1}) (Fragment))
HSP 1 Score: 330.102 bits (845), Expect = 6.213e-113
Identity = 167/217 (76.96%), Postives = 177/217 (81.57%), Query Frame = 0
Query: 1 MATLNLSPLSKTLI------NPTPLKPSTPLSCLSLSYPLQSLSFSLTQNLKPTRNSSRTLIRAAVDGDYSAKRSNSSEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLETLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEEVSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPKQQRRSKYESKRYVRQRDG 211
MATLNLS LSKTL PTP ST L Y S+S+S SRTL+RAAVDGDYSAKRS+S+EPRETI+LPGCDYNHWLIVMEFPKDPAP+R+QMI+TYL TLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEE SEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPC YPTYQPKQ RS+ SKRYVRQRDG
Sbjct: 14 MATLNLSLLSKTLTPHSHPKTPTPHLASTSRLPLVSPYRSNSVSYSSWTRRHSIPTPSRTLVRAAVDGDYSAKRSSSNEPRETILLPGCDYNHWLIVMEFPKDPAPSRDQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCEYPTYQPKQSNRSRNTSKRYVRQRDG 230
Match: A0A2G3A8P7 ((DAG protein, chloroplastic {ECO:0000313|RefSeq:XP_016560032.1}))
HSP 1 Score: 328.561 bits (841), Expect = 8.073e-113
Identity = 168/230 (73.04%), Postives = 186/230 (80.87%), Query Frame = 0
Query: 1 MATLNLSPLSKTLINPTPLK--PSTPLSCLSLSYPLQSLSFSLTQNLKPTRNSSRTLIRAAVDGDYSAKRS-NSSEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLETLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEEVSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPKQQRRSKYESKRYVRQRDGPPPERRKPKQATESPS 227
MA LNL+PLSKTL + + P TP LSLSYP + S S ++ P + S ++RA DG+YS+KR +SS+ RETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYL TLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEE SEKFKGLPGVLWVLPDSYIDVKNKDYGGDKY+NGEIIPC YPTYQPKQ R++ +SK YVR+RDG PPER K A ES S
Sbjct: 1 MAALNLAPLSKTLNPKSQFQNPPKTPTCLLSLSYPFLTASLS---SIPPAKTSRLRVVRAISDGEYSSKRGGSSSDERETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPCQYPTYQPKQSNRTRSKSKAYVRRRDG-PPERTKQAAAPESSS 226
| Match Name | Stats | Description |
|---|---|---|
| A0A2U1PAT9 | E-Value: 3.706e-118, PID: 77.49 | (Uncharacterized protein {ECO:0000313|EMBL:PWA8287... [more] |
| A0A835D872 | E-Value: 4.608e-117, PID: 72.08 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8391... [more] |
| A0A2J6JHR3 | E-Value: 9.176e-117, PID: 77.68 | (Uncharacterized protein {ECO:0000313|EMBL:PLY6234... [more] |
| M1BYQ1 | E-Value: 1.179e-115, PID: 72.93 | (DAG protein, chloroplastic {ECO:0000313|EnsemblPl... [more] |
| A0A7J7GV21 | E-Value: 3.850e-114, PID: 74.36 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5944... [more] |
| A0A251S0B1 | E-Value: 6.315e-114, PID: 74.89 | (Putative DAG protein {ECO:0000313|EMBL:OTF91999.1... [more] |
| A0A3Q7F6N8 | E-Value: 2.852e-113, PID: 72.05 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A103XU25 | E-Value: 3.691e-113, PID: 76.05 | (Uncharacterized protein {ECO:0000313|EMBL:KVH9690... [more] |
| A0A5B6YHE3 | E-Value: 6.213e-113, PID: 76.96 | (Uncharacterized protein {ECO:0000313|EMBL:MPA3082... [more] |
| A0A2G3A8P7 | E-Value: 8.073e-113, PID: 73.04 | (DAG protein, chloroplastic {ECO:0000313|RefSeq:XP... [more] |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |