Resource Type:
Polypeptide
Name:
XM_017386937.1
Identifier:
XM_017386937.1-protein
Sequence:
MNSLLLHSLKRSNRLKLALASLTHQSLSLLNPPTGLSSNTHNFSTLTHNI
HTANRIINTAKAPSELSLRRWVHSDIVLNVRATPSVSRISAAVDDFSDED
VKKGGASKDEEGLEISKLGIASEIVDCLAKKGITKLFPIQRAVLEPAMQG
RDMIGRAKTGTGKTLAFGIPIMDKIIQFNKKHGQGRYPLALCLAPTRELA
SQVEKEFYESCPLETICAYGGTPISRQMSALDHGADVVVGTPGRVIDLIK
RGSLNLSEVQFVVLDEADQMLNVGFADDVETILKNLPLNRQTLMFSATMP
KWIVQLTRKYLKNPLTIDLVGENDQKLAEGITLYSIVSDMHDKPGILGPL
VTEHANGGKCIVFTQTKRDADRLAYAMKKSFPCEPLHGDITQAQRERTLA
GFRNGQFNVLIATDVAARGLDVPNVDLVIHYELPNSSEIFVHRSGRTGRA
GKKGRAILIHSSNQLRDVKTIERDVGCRFSELSSIKVDAGARDMFREMGS
GSRFGSSGSRDGGRFGNSGYGRSSSYGGFGSGGSGGSSYGRSGGFGGSSG
RSSGGFGGYGGQSSSRSSGGFGESGSRSSGGFGGSGSGRSGGFGSNSGHS
GGFGNLGGSDRSSNRTRSGGFGFGNSKLDDSIF
Sequence Length:
633
Sequence Checksum:
3d5c104dc74e30d2f95e8101b5c8d3d0
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017386937.1, derives from mRNA, XM_017386937.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017386937.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017386937.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5ZEJ6 ((DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like isoform X1 {ECO:0000313|RefSeq:XP_022750771.1, ECO:0000313|RefSeq:XP_022750772.1}))
HSP 1 Score: 707.983 bits (1826), Expect = 0.000e+0
Identity = 370/555 (66.67%), Postives = 430/555 (77.48%), Query Frame = 0
Match: A0A6P5ZEJ6 ((DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like isoform X1 {ECO:0000313|RefSeq:XP_022750771.1, ECO:0000313|RefSeq:XP_022750772.1}))
HSP 1 Score: 707.983 bits (1826), Expect = 0.000e+0
Identity = 370/555 (66.67%), Postives = 430/555 (77.48%), Query Frame = 0
Query: 78 LNVRATPSVSRISAAVDDFSDEDVKKGGASKDEEGLEISKLGIASEIVDCLAKKGITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKIIQFNKKHGQGRYPLALCLAPTRELASQVEKEFYESCP-LETICAYGGTPISRQMSALDHGADVVVGTPGRVIDLIKRGSLNLSEVQFVVLDEADQMLNVGFADDVETILKNLPLNRQTLMFSATMPKWIVQLTRKYLKNPLTIDLVGENDQKLAEGITLYSIVSDMHDKPGILGPLVTEHANGGKCIVFTQTKRDADRLAYAMKKSFPCEPLHGDITQAQRERTLAGFRNGQFNVLIATDVAARGLDVPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGRAILIHSSNQLRDVKTIERDVGCRFSELSSIKVDAGARDMFREMGSGSRFGSSGSRDGGRFGNSGYGRSSSYGGFGSGGSGGSSYGRSGGFGGSSGRSSGGFGGYGGQSSSRSSGGFGESGSRSSGGFGGSGSGRSGGFG--SNSGHSGGFGNLGGSDRSSNRTRSGGFGFGNSKLD 629
LN RA+PS + A++D+ DE KGG +GLEIS LGIA EIV L KGITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKII++N +HG+GR PL L LAPTRELA QVEKEF+ES P L+TIC YGGTPISRQM LD+G DV VGTPGR+IDL+KRG+LNL+EVQF+V+DEADQML VGFA+DVETIL+ LP NRQ++MFSATMPKWI LT+KYLKNPLTIDLVGE+DQKLAEGI+LYSI +DMH K ILGPL+TEHA GGKCIVFTQTKRDADRLAYAM ++F CE LHGDI+Q+QRERTL+GFR+G FN+L+ATDVAARGLD+P+VDL+IHYELPN+SE FVHR+GRTGRAG+KG AILI++ Q R V+ IER+VGCRFSEL I+V+ G+ MF EMG+G RFG R+G+ G GRS G +G G GG+ +S GFG + + SG GGYGG S SR FG + SG GG GR GFG S S S GFG+ G RTR G GFG+S D
Sbjct: 71 LNFRASPSW-KAEYAIEDYDDE---KGG-----DGLEISSLGIAPEIVSALKNKGITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKIIRYNAEHGRGRNPLCLVLAPTRELAKQVEKEFHESAPNLDTICVYGGTPISRQMRQLDYGVDVAVGTPGRIIDLLKRGALNLTEVQFLVIDEADQMLQVGFAEDVETILERLPANRQSMMFSATMPKWIKSLTQKYLKNPLTIDLVGESDQKLAEGISLYSIAADMHRKASILGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFKCEALHGDISQSQRERTLSGFRDGHFNILVATDVAARGLDIPSVDLIIHYELPNTSETFVHRTGRTGRAGRKGSAILIYTQEQSRAVRVIEREVGCRFSELPRIEVEGGSTGMFNEMGAGGRFGLFRGTPDRRYGDMGSGRSGRKGEYGFGRPGGN---KSPGFGRAGSQFSGEMGGYGGPSFSR----FGSNN--WSGNLGGPAFGRPSGFGDSSKSDRSSGFGSFG-----PRRTRGFG-GFGSSNPD 601
BLAST of XM_017386937.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8PLY1 ((DEAD-box ATP-dependent RNA helicase 53-like {ECO:0000313|RefSeq:XP_016751214.1}))
HSP 1 Score: 706.057 bits (1821), Expect = 0.000e+0
Identity = 368/576 (63.89%), Postives = 433/576 (75.17%), Query Frame = 0
Match: A0A1U8PLY1 ((DEAD-box ATP-dependent RNA helicase 53-like {ECO:0000313|RefSeq:XP_016751214.1}))
HSP 1 Score: 706.057 bits (1821), Expect = 0.000e+0
Identity = 368/576 (63.89%), Postives = 433/576 (75.17%), Query Frame = 0
Query: 45 TLTHNIHTANRIINTAKAPSELSLRRW-------------VHSDI-VLNVRATPSVSRISAAVDDFSDEDVKKGGASKDEEGLEISKLGIASEIVDCLAKKGITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKIIQFNKKHGQGRYPLALCLAPTRELASQVEKEFYESCP-LETICAYGGTPISRQMSALDHGADVVVGTPGRVIDLIKRGSLNLSEVQFVVLDEADQMLNVGFADDVETILKNLPLNRQTLMFSATMPKWIVQLTRKYLKNPLTIDLVGENDQKLAEGITLYSIVSDMHDKPGILGPLVTEHANGGKCIVFTQTKRDADRLAYAMKKSFPCEPLHGDITQAQRERTLAGFRNGQFNVLIATDVAARGLDVPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGRAILIHSSNQLRDVKTIERDVGCRFSELSSIKVDAGARDMFREMGSGSRFGSSGSRDGGRFGNSGYGRSSSYGGFGSGGSGGSSYGRSGGFGGSSGRSSGGFGGYGGQ-SSSRSSGGFGESGSRSSGGFGGSGSGRSGGFGS-NSGHSGGF 603
TL H+ H+ + A+ + R+ H+ L RA+ V + AV+D+ DE K E LEIS LGIA EIV L +GITKLFPIQRAVLEPAMQGRDMIGR KTGTGKTLA+GIPIMDKII++N KHG+GR PL L LAPTRELA QVEKEF+ES P L+TIC YGGTPISRQM LD+G DV VGTPGR+IDL+KRG+LNLSEVQF+VLDEADQML VGFA+DVETIL+ LP NRQ++MFSATMP WI LT+K+LKNPLTIDLVGENDQKLAEGI+LYSI +DM K ILGPL+TEHA GGKCIVFTQTKRDADRLAYAM ++F CE LHGDI+Q+QRERTL+GFR+G FN+L+ATDVAARGLD+P+VDLVIHYELPN+SE FVHR+GRTGRAG+KG AILI++ +Q R VK IER+VGCRFSEL I+VD G+ MF ++G+G RFG G+RD G +G+ G+GRS +G G SGG+ R GFG S + S GGYGG+ S+ SG FG S S S GFG GS R+ GFG SG+ GGF
Sbjct: 24 TLLHHFHSTATVATAARDAETFFINRFKPFPGFPASAAKGFHAKSGPLYFRASTGV-QAEYAVEDYVDE--------KGSEALEISNLGIAPEIVSALKNRGITKLFPIQRAVLEPAMQGRDMIGRGKTGTGKTLAYGIPIMDKIIRYNAKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPNLDTICVYGGTPISRQMRQLDYGVDVAVGTPGRIIDLLKRGALNLSEVQFLVLDEADQMLQVGFAEDVETILERLPANRQSMMFSATMPNWIRSLTQKHLKNPLTIDLVGENDQKLAEGISLYSIAADMRGKAAILGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFKCEALHGDISQSQRERTLSGFRDGHFNILVATDVAARGLDIPSVDLVIHYELPNTSETFVHRTGRTGRAGRKGSAILIYTQDQNRAVKVIEREVGCRFSELPRIEVDGGSTGMFNDIGAGVRFG--GARDRG-YGDMGFGRSGRQAEYGFGRSGGN---RGPGFGRSGSQFSDEMGGYGGRFGSNNRSGNFGGSASNRSSGFGNFGSRRTSGFGDFGSGNPGGF 584
BLAST of XM_017386937.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8PMC0 ((DEAD-box ATP-dependent RNA helicase 53-like {ECO:0000313|RefSeq:XP_016751354.1}))
HSP 1 Score: 705.286 bits (1819), Expect = 0.000e+0
Identity = 362/531 (68.17%), Postives = 422/531 (79.47%), Query Frame = 0
Match: A0A1U8PMC0 ((DEAD-box ATP-dependent RNA helicase 53-like {ECO:0000313|RefSeq:XP_016751354.1}))
HSP 1 Score: 705.286 bits (1819), Expect = 0.000e+0
Identity = 362/531 (68.17%), Postives = 422/531 (79.47%), Query Frame = 0
Query: 78 LNVRATPSVSRISAAVDDFSDEDVKKGGASKDEEGLEISKLGIASEIVDCLAKKGITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKIIQFNKKHGQGRYPLALCLAPTRELASQVEKEFYESCP-LETICAYGGTPISRQMSALDHGADVVVGTPGRVIDLIKRGSLNLSEVQFVVLDEADQMLNVGFADDVETILKNLPLNRQTLMFSATMPKWIVQLTRKYLKNPLTIDLVGENDQKLAEGITLYSIVSDMHDKPGILGPLVTEHANGGKCIVFTQTKRDADRLAYAMKKSFPCEPLHGDITQAQRERTLAGFRNGQFNVLIATDVAARGLDVPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGRAILIHSSNQLRDVKTIERDVGCRFSELSSIKVDAGARDMFREMGSGSRFGSSGSRDGGRFGNSGYGRSSSYGGFGSGGSGGSSYGRSGGFGGSSGRSSGGFGGYGGQ-SSSRSSGGFGESGSRSSGGFGGSGSGRSGGFGS-NSGHSGGFGN 605
L RA+ S+ + AV+D+ +E K E LEIS LGIA EIV L +GITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKII++N KHG+GR P+ L LAPTRELA QVEKEF+ES P L+TIC YGGTPISRQM LD+G DV VGTPGR+IDL+KRG+LNLSEVQF+VLDEADQML VGFA+DVETIL+ LP NRQ++MFSATMP WI LT+K+LKNPLTIDLVGENDQKLAEGI+LYSI +DM K GILGPL+TEHA GGKCIVFTQTKRDADRLAYAM ++F CE LHGDI+Q+QRERTL+GFR+G FN+L+ATDVAARGLD+P+VDLVIHYELPN+SE FVHR+GRTGRAG+KG AILI++ +Q R VK IER+VGCRFSEL I+VD G+ MF ++G+G RFG G RD G +G+ G+GRS +G G SGG+ R GFG S + S GGYGG+ S+ SG FG S S S GFG GS R+ GFG SG+ GGF +
Sbjct: 71 LYFRASTSL-QAEYAVEDYVEE--------KGSEALEISNLGIAPEIVSALKNRGITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKIIRYNAKHGRGRNPMCLVLAPTRELAKQVEKEFHESAPNLDTICVYGGTPISRQMRQLDYGVDVAVGTPGRIIDLLKRGALNLSEVQFLVLDEADQMLQVGFAEDVETILERLPANRQSMMFSATMPNWIRSLTQKHLKNPLTIDLVGENDQKLAEGISLYSIAADMRGKAGILGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFKCEALHGDISQSQRERTLSGFRDGHFNILVATDVAARGLDIPSVDLVIHYELPNTSETFVHRTGRTGRAGRKGSAILIYTQDQSRAVKVIEREVGCRFSELPRIEVDGGSTGMFNDIGAGGRFG--GPRDRG-YGDMGFGRSGRQAEYGFGRSGGN---RGTGFGRSGSQFSDEMGGYGGRFGSNNRSGNFGGSASNRSSGFGSFGSRRTSGFGDFGSGNPGGFND 586
BLAST of XM_017386937.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2QUE3 ((Uncharacterized protein {ECO:0000313|EMBL:TYI31055.1}))
HSP 1 Score: 701.434 bits (1809), Expect = 0.000e+0
Identity = 381/618 (61.65%), Postives = 450/618 (72.82%), Query Frame = 0
Match: A0A5D2QUE3 ((Uncharacterized protein {ECO:0000313|EMBL:TYI31055.1}))
HSP 1 Score: 701.434 bits (1809), Expect = 0.000e+0
Identity = 381/618 (61.65%), Postives = 450/618 (72.82%), Query Frame = 0
Query: 45 TLTHNIHTANRIINTAKAPSELSLRRW-------------VHSDI-VLNVRATPSVSRISAAVDDFSDEDVKKGGASKDEEGLEISKLGIASEIVDCLAKKGITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKIIQFNKKHGQGRYPLALCLAPTRELASQVEKEFYESCP-LETICAYGGTPISRQMSALDHGADVVVGTPGRVIDLIKRGSLNLSEVQFVVLDEADQMLNVGFADDVETILKNLPLNRQTLMFSATMPKWIVQLTRKYLKNPLTIDLVGENDQKLAEGITLYSIVSDMHDKPGILGPLVTEHANGGKCIVFTQTKRDADRLAYAMKKSFPCEPLHGDITQAQRERTLAGFRNGQFNVLIATDVAARGLDVPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGRAILIHSSNQLRDVKTIERDVGCRFSELSSIKVDAGARDMFREMGSGSRFGSSGSRDGGRFGNSGYGRSSSYGGFGSGGSGGSSYGRSGGFGGSSGRSSGGFGGYGGQSSSRSSGG------------FGESGSRSSGGFGGSGSGRSGGFGSN-SGHS-GGFGNL--GGSDRSSNRTRSGGFG-FGNSKLDD 630
TL H+ H+ + A+ + R+ H+ L RA+ V + AV+D+ DE K E LEIS LGIA EIV L +GITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKII++N KHG+GR PL L LAPTRELA QVEKEF+ES P L+TIC YGGTPISRQM LD+G DV VGTPGR+IDL+KRG+LNLSEVQF+VLDEADQML VGFA+DVETIL+ LP NRQ++MFSATMP WI LT+K+LKNPLTIDLVGENDQKLAEGI+LYSI +DM K ILGPL+TEHA GGKCIVFTQTKRDADRLAYAM ++F CE LHGDI+Q+QRERTL+GFR+G FN+L+ATDVAARGLD+P+VDLVIHYELPN+SE FVHR+GRTGRAG+KG AILI++ +Q R VK IER+VGCRFSEL I+VD G+ MF ++G+G RFG G+RD G +G+ G+GRS +G G SGG+ R GFG S + S GGYGG+ S + G FG GSR + GFG GSG GGF N SG + GGFG+ G S S+ +RS F FG S +D+
Sbjct: 24 TLLHHFHSTATVATAARDAETFFINRFKPFPGFPASAAKGFHAKSGPLYFRASTGV-QAEYAVEDYVDE--------KGSEALEISNLGIAPEIVSALKNRGITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKIIRYNAKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPNLDTICVYGGTPISRQMRQLDYGVDVAVGTPGRIIDLLKRGALNLSEVQFLVLDEADQMLQVGFAEDVETILERLPANRQSMMFSATMPNWIRSLTQKHLKNPLTIDLVGENDQKLAEGISLYSIAADMRGKAAILGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFKCEALHGDISQSQRERTLSGFRDGHFNILVATDVAARGLDIPSVDLVIHYELPNTSETFVHRTGRTGRAGRKGSAILIYTQDQNRAVKVIEREVGCRFSELPRIEVDGGSTGMFNDIGAGVRFG--GARDRG-YGDMGFGRSGRQAEYGFGRSGGN---RGPGFGRSGSQFSDEMGGYGGRFGSNNRSGNFGGSASSRSSGFGNFGSRRTSGFGDFGSGNPGGFKDNRSGQTAGGFGDKHSGQSSASNGDSRSSRFSRFGVSDVDN 626
BLAST of XM_017386937.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6BC24 ((DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like isoform X1 {ECO:0000313|RefSeq:XP_022774629.1, ECO:0000313|RefSeq:XP_022774630.1}))
HSP 1 Score: 698.353 bits (1801), Expect = 0.000e+0
Identity = 357/548 (65.15%), Postives = 422/548 (77.01%), Query Frame = 0
Match: A0A6P6BC24 ((DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like isoform X1 {ECO:0000313|RefSeq:XP_022774629.1, ECO:0000313|RefSeq:XP_022774630.1}))
HSP 1 Score: 698.353 bits (1801), Expect = 0.000e+0
Identity = 357/548 (65.15%), Postives = 422/548 (77.01%), Query Frame = 0
Query: 78 LNVRATPSVSRISAAVDDFSDEDVKKGGASKDEEGLEISKLGIASEIVDCLAKKGITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKIIQFNKKHGQGRYPLALCLAPTRELASQVEKEFYESCP-LETICAYGGTPISRQMSALDHGADVVVGTPGRVIDLIKRGSLNLSEVQFVVLDEADQMLNVGFADDVETILKNLPLNRQTLMFSATMPKWIVQLTRKYLKNPLTIDLVGENDQKLAEGITLYSIVSDMHDKPGILGPLVTEHANGGKCIVFTQTKRDADRLAYAMKKSFPCEPLHGDITQAQRERTLAGFRNGQFNVLIATDVAARGLDVPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGRAILIHSSNQLRDVKTIERDVGCRFSELSSIKVDAGARDMFREMGSGSRFGSSGSRDGGRFGNSGYGRSSSYGGFGSGGSGGSSYGRSGGFGGSSGR--------------------SSGGFG--------GYGGQSSSRSSGGFGESGSRSSGGFGGSGSGRSGGFGSN 596
L+ RA+P + + AV+D+ +E KGG +GLEI LGIA EIV L +GITKLFPIQRAVLEPAM+GRDMIGRAKTGTGKTLAFGIPIMDKII++N +HG+GR PL L LAPTRELA QVEKEF+ES P L++IC YGGTPISRQM LD+G DV VGTPGR+IDL+KRG+LNL+EVQF+VLDEADQML VGFA+DVETIL+ LP NRQ++MFSATMP WI LT+K+LKNPLTIDLVGE+DQKLAEGI+LYSI +DMH K ILGPL+TEHA GGKCIVFTQTKRDADRLAYAM ++F CE LHGDI+Q+QRERTL+GFR+G FN+L+ATDVAARGLD+P+VDLVIHYELPN+SE FVHR+GRTGRAG+KG AILI++ Q R V+ IER+VGCRFSEL I++D G+ DMF +MG+G RFGS GS R+G++G+GRSS G +G G GG+ RS GFG G+ SG FG G+G S S GFG G+R + GFG GSG GGFG N
Sbjct: 70 LSFRASPCL-QAEYAVEDYDEE---KGG-----DGLEICNLGIAPEIVSALKSRGITKLFPIQRAVLEPAMRGRDMIGRAKTGTGKTLAFGIPIMDKIIRYNAQHGRGRNPLCLVLAPTRELAKQVEKEFHESAPNLDSICVYGGTPISRQMRQLDYGVDVAVGTPGRIIDLLKRGALNLTEVQFLVLDEADQMLQVGFAEDVETILERLPANRQSMMFSATMPNWIKSLTQKHLKNPLTIDLVGESDQKLAEGISLYSIAADMHGKASILGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNILVATDVAARGLDIPSVDLVIHYELPNTSETFVHRTGRTGRAGRKGSAILIYTQEQSRAVRVIEREVGCRFSELPRIEIDGGSTDMFNDMGTGGRFGSFGSTRDRRYGDTGFGRSSRQGEYGFGRPGGN---RSPGFGRRGGQFSDDMGGYGGSSSSRFGSNNRSGNFGGPAFGHRSGFGELGKSDRSSGFGSFGTRRTSGFGDFGSGNPGGFGDN 605
BLAST of XM_017386937.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061DK67 ((DEAD-box ATP-dependent RNA helicase 53 isoform 1 {ECO:0000313|EMBL:EOX93040.1}))
HSP 1 Score: 697.967 bits (1800), Expect = 0.000e+0
Identity = 379/647 (58.58%), Postives = 460/647 (71.10%), Query Frame = 0
Match: A0A061DK67 ((DEAD-box ATP-dependent RNA helicase 53 isoform 1 {ECO:0000313|EMBL:EOX93040.1}))
HSP 1 Score: 697.967 bits (1800), Expect = 0.000e+0
Identity = 379/647 (58.58%), Postives = 460/647 (71.10%), Query Frame = 0
Query: 1 MNSLLLHSLKRSNR--LKLALASLTHQSLSLLNPPTGLSSNTHNFSTLTHNIHTANRIINTAKAPSELSLRRWVHSDIVLNVRATPSVSRISAAVDDFSDEDVKKGGASKDEEGLEISKLGIASEIVDCLAKKGITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKIIQFNKKHGQGRYPLALCLAPTRELASQVEKEFYESCP-LETICAYGGTPISRQMSALDHGADVVVGTPGRVIDLIKRGSLNLSEVQFVVLDEADQMLNVGFADDVETILKNLPLNRQTLMFSATMPKWIVQLTRKYLKNPLTIDLVGENDQKLAEGITLYSIVSDMHDKPGILGPLVTEHANGGKCIVFTQTKRDADRLAYAMKKSFPCEPLHGDITQAQRERTLAGFRNGQFNVLIATDVAARGLDVPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGRAILIHSSNQLRDVKTIERDVGCRFSELSSIKVDAGARDMFREMGSGSRFGSSGSRDGGRFGNSGYGRSSSYGGFGSGGSGGSS---YGRSGG-------------------------FGGSSGRSSGGFGGYGGQSSSRSSGGFGESGSRSSGGFGGSGSGRSGGFGSN-SGHSGGFGNLGGSDRSSNR 615
MN++L + ++R L + +L H S +++T N TL+ NR + P + R + LN RA+PS + AV+D+ D+ KGG +GL+IS LGIA EIV L KGITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFG+PIMDKII++N +HG+GR PL L LAPTRELA QVEKEF+ES P L+TIC YGGTPISRQM LD G D+ VGTPGR+IDL+KRG+LNLSEVQF+VLDEADQML+VGF ++VETIL+ LP NRQ++MFSATMP WI +LT+K+LKNPLTIDLVGE+DQKLAEGI+LYSI +DMH K ILGPL+TEHA GGKCIVFTQTKRDADRLAYAM ++F CE LHGDI+Q+QRERTL+GFR+G FN+L+ATDVAARGLD+P+VDLVIHYELPN+SE FVHR+GRTGRAG+KG AILI++ Q R V+ IER+VGCRFSEL I+V+ G+ D F EMG+GSRFGS G R+G+ G+GRS +G G GG+ +GRSGG FGG + GGFG +G S S FG G R + GFG GS +GGF N SG S G+ G +D+S+ R
Sbjct: 2 MNTVLKPTASLASRRILTASAQTLLHHFHSTAAAAAAAAASTRNSETLS-----INRFKPFSSFPGPTA-RNFHAKSGPLNFRASPSW-QAEYAVEDYEDD---KGG-----DGLDISNLGIAPEIVSALKNKGITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGMPIMDKIIRYNAQHGRGRNPLCLVLAPTRELAKQVEKEFHESAPNLDTICVYGGTPISRQMRQLDFGVDIAVGTPGRIIDLLKRGALNLSEVQFLVLDEADQMLHVGFVEEVETILERLPENRQSMMFSATMPNWIKRLTQKHLKNPLTIDLVGESDQKLAEGISLYSIAADMHGKASILGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNILVATDVAARGLDIPSVDLVIHYELPNTSETFVHRTGRTGRAGRKGSAILIYTREQSRAVRVIEREVGCRFSELPKIEVEGGSTDTFNEMGAGSRFGSFGGTRDRRYGDMGFGRSGRQEEYGFGRLGGNRSPGFGRSGGQFAGEMGSYGGSSSSRFGSNNRSGNFGGPAFSRPGGFGEFGKADRSSS---FGSFGPRRTSGFGDFGSSNTGGFDDNRSGQSS--GSYGNNDQSTGR 628
BLAST of XM_017386937.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2GRN4 ((Uncharacterized protein {ECO:0000313|EMBL:TYH20378.1}))
HSP 1 Score: 695.656 bits (1794), Expect = 0.000e+0
Identity = 366/579 (63.21%), Postives = 428/579 (73.92%), Query Frame = 0
Match: A0A5D2GRN4 ((Uncharacterized protein {ECO:0000313|EMBL:TYH20378.1}))
HSP 1 Score: 695.656 bits (1794), Expect = 0.000e+0
Identity = 366/579 (63.21%), Postives = 428/579 (73.92%), Query Frame = 0
Query: 45 TLTHNIHTANRIINTAKAPSELSLRRW-------------VHSDI-VLNVRATPSVSRISAAVDDFSDEDVKKGGASKDEEGLEISKLGIASEIVDCLAKKGITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKIIQFNKKHGQGRYPLALCLAPTRELASQVEKEFYESCP-LETICAYGGTPISRQMSALDHGADVVVGTPGRVIDLIKRGSLNLSEVQFVVLDEADQMLNVGFADDVETILKNLPLNRQTLMFSATMPKWIVQLTRKYLKNPLTIDLVGENDQKLAEGITLYSIVSDMHDKPGILGPLVTEHANGGKCIVFTQTKRDADRLAYAMKKSFPCEPLHGDITQAQRERTLAGFRNGQFNVLIATDVAARGLDVPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGRAILIHSSNQLRDVKTIERDVGCRFSELSSIKVDAGARDMFREMGSGSRFGSSGSRDGGRFGNSGYGRSSSYGGFGSGGSGGSSYGRSGGFGGSSGRSSGGFGGYGGQSSSRSSGG------------FGESGSRSSGGFGGSGSGRSGGFGSN 596
TL H+ H+ I A+ + R+ H+ L RA+ V + AV+D+ DE K E LEIS LGIA EIV L +GITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKII++N KHG+GR PL L LAPTRELA QVEKEF+ES P L+TIC YGGTPISRQM LD+G DV VGTPGR+IDL+KRG+LNLSEVQF+VLDEADQML VGFA+DVETIL+ LP NRQ++MFSATMP WI LT+K+LKNPLTIDLVGENDQKLAEGI+LYSI +DM K ILGPL+TEHA GGKCIVFTQTKRDADRLAYAM ++F CE LHGDI+Q+QRERTL+GFR+G FN+L+ATDVAARGLD+P+VDLVIHYELPN+SE FVHR+GRTGRAG+KG AILI++ +Q R VK IER+VGCRFSEL I+VD G+ MF ++G+G RFG G+RD G +G+ G+GRS +G G SGG+ R GFG S + S GGYGG+ S + G FG GSR + GFG GSG GGF N
Sbjct: 24 TLLHHFHSTATIATAARDAETFFINRFKPFPGFPASAAKGFHAKSGPLYFRASTGV-QAEYAVEDYVDE--------KGSEALEISNLGIAPEIVSALKNRGITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKIIRYNAKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPNLDTICVYGGTPISRQMRQLDYGVDVAVGTPGRIIDLLKRGALNLSEVQFLVLDEADQMLQVGFAEDVETILERLPANRQSMMFSATMPNWIRSLTQKHLKNPLTIDLVGENDQKLAEGISLYSIAADMRGKAAILGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFKCEALHGDISQSQRERTLSGFRDGHFNILVATDVAARGLDIPSVDLVIHYELPNTSETFVHRTGRTGRAGRKGSAILIYTQDQNRAVKVIEREVGCRFSELPRIEVDGGSTGMFNDIGAGVRFG--GARDRG-YGDMGFGRSGRQAEYGFGRSGGN---RGPGFGRSGSQFSDEMGGYGGRFGSNNRSGNFGGSASSRSSGFGNFGSRRTSGFGDFGSGNPGGFKDN 587
BLAST of XM_017386937.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1BN00 ((DEAD-box ATP-dependent RNA helicase 53-like {ECO:0000313|RefSeq:XP_021300804.1, ECO:0000313|RefSeq:XP_021300805.1}))
HSP 1 Score: 695.656 bits (1794), Expect = 0.000e+0
Identity = 365/600 (60.83%), Postives = 438/600 (73.00%), Query Frame = 0
Match: A0A6J1BN00 ((DEAD-box ATP-dependent RNA helicase 53-like {ECO:0000313|RefSeq:XP_021300804.1, ECO:0000313|RefSeq:XP_021300805.1}))
HSP 1 Score: 695.656 bits (1794), Expect = 0.000e+0
Identity = 365/600 (60.83%), Postives = 438/600 (73.00%), Query Frame = 0
Query: 40 THNFSTLTHNIHTANRIINTAKAPSELSLRRW-------------VHSDI-VLNVRATPSVSRISAAVDDFSDEDVKKGGASKDEEGLEISKLGIASEIVDCLAKKGITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKIIQFNKKHGQGRYPLALCLAPTRELASQVEKEFYESCP-LETICAYGGTPISRQMSALDHGADVVVGTPGRVIDLIKRGSLNLSEVQFVVLDEADQMLNVGFADDVETILKNLPLNRQTLMFSATMPKWIVQLTRKYLKNPLTIDLVGENDQKLAEGITLYSIVSDMHDKPGILGPLVTEHANGGKCIVFTQTKRDADRLAYAMKKSFPCEPLHGDITQAQRERTLAGFRNGQFNVLIATDVAARGLDVPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGRAILIHSSNQLRDVKTIERDVGCRFSELSSIKVDAGARDMFREMGSGSRFGSSGSRDGGRFGNSGYGRSSSYGGFGSGGSGGSS---YGRSGG-------------------------FGGSSGRSSGGFGGYGGQSSSRSSGGFGESGSRSSGGFGGSGSGRSGGFGSN 596
T + TL H+ H+ A+ L + R+ H+ + LN RA+PS + AV+D+ ++ KGG +GL+IS LGIA EIV L +GITKLFPIQ+AVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKII++N +HG+GR PL L LAPTRELA QVEKEF+ES P L+TIC YGGTPIS QM LD+G D+ VGTPGR+IDL+KRG+LNL+EVQF+VLDEADQML+VGFA+DVETIL+ LP NRQ++MFSATMP WI LT+K+LKNPLTIDLVGE+DQKLAEGI+LYSI +DMH K ILGPL+TEHA GGKCIVFTQTKRDADRLAYAM ++F CE LHGDI+Q+QRERTL+GFR+G FN+L+ATDVAARGLD+P+VDL+IHYELPN+SE FVHR+GRTGRAG+KG AILI++ Q R V+ IER+VGCRFSEL I+V+ G+ DMF EMG+GSRFGS G R G+ G+ RS G +G G GG+ +GRSGG FGG + GGFG +G RSS GFG G R + GFG GS +GGFG N
Sbjct: 19 TASVQTLLHHFHSTAAAAAAARNAETLFINRFKPFSGFPGPTARNFHAKLGPLNFRASPSW-QAEYAVEDYEED---KGG-----DGLDISNLGIAPEIVSALKNRGITKLFPIQKAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKIIRYNAQHGRGRNPLCLVLAPTRELAKQVEKEFHESAPNLDTICVYGGTPISSQMRQLDYGVDIAVGTPGRIIDLLKRGALNLNEVQFLVLDEADQMLHVGFAEDVETILERLPENRQSMMFSATMPNWIKGLTQKHLKNPLTIDLVGESDQKLAEGISLYSIATDMHGKASILGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNILVATDVAARGLDIPSVDLIIHYELPNTSETFVHRTGRTGRAGRKGSAILIYTREQSRAVRVIEREVGCRFSELPKIEVEGGSTDMFNEMGAGSRFGSFGGMRDRRLGDMGFARSGRQGEYGFGRPGGNRSPGFGRSGGQFAGEMGSYGGSSSSRFGSNNRSGNFGGPAFSRPGGFGEFG--KLDRSS-GFGSFGPRRTSGFGEFGSSNTGGFGDN 606
BLAST of XM_017386937.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5W0J2 ((Uncharacterized protein {ECO:0000313|EMBL:KAB2085443.1}))
HSP 1 Score: 695.271 bits (1793), Expect = 0.000e+0
Identity = 365/579 (63.04%), Postives = 428/579 (73.92%), Query Frame = 0
Match: A0A5J5W0J2 ((Uncharacterized protein {ECO:0000313|EMBL:KAB2085443.1}))
HSP 1 Score: 695.271 bits (1793), Expect = 0.000e+0
Identity = 365/579 (63.04%), Postives = 428/579 (73.92%), Query Frame = 0
Query: 45 TLTHNIHTANRIINTAKAPSELSLRRW-------------VHSDI-VLNVRATPSVSRISAAVDDFSDEDVKKGGASKDEEGLEISKLGIASEIVDCLAKKGITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKIIQFNKKHGQGRYPLALCLAPTRELASQVEKEFYESCP-LETICAYGGTPISRQMSALDHGADVVVGTPGRVIDLIKRGSLNLSEVQFVVLDEADQMLNVGFADDVETILKNLPLNRQTLMFSATMPKWIVQLTRKYLKNPLTIDLVGENDQKLAEGITLYSIVSDMHDKPGILGPLVTEHANGGKCIVFTQTKRDADRLAYAMKKSFPCEPLHGDITQAQRERTLAGFRNGQFNVLIATDVAARGLDVPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGRAILIHSSNQLRDVKTIERDVGCRFSELSSIKVDAGARDMFREMGSGSRFGSSGSRDGGRFGNSGYGRSSSYGGFGSGGSGGSSYGRSGGFGGSSGRSSGGFGGYGGQSSSRSSGG------------FGESGSRSSGGFGGSGSGRSGGFGSN 596
TL H+ H+ + A+ + R+ H+ L RA+ V + AV+D+ DE K E LEIS LGIA EIV L +GITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKII++N KHG+GR PL L LAPTRELA QVEKEF+ES P L+TIC YGGTPISRQM LD+G DV VGTPGR+IDL+KRG+LNLSEVQF+VLDEADQML VGFA+DVETIL+ LP NRQ++MFSATMP WI LT+K+LKNPLTIDLVGENDQKLAEGI+LYSI +DM K ILGPL+TEHA GGKCIVFTQTKRDADRLAYAM ++F CE LHGDI+Q+QRERTL+GFR+G FN+L+ATDVAARGLD+P+VDLVIHYELPN+SE FVHR+GRTGRAG+KG AILI++ +Q R VK IER+VGCRFSEL I+VD G+ MF ++G+G RFG G+RD G +G+ G+GRS +G G SGG+ R GFG S + S GGYGG+ S + G FG GSR + GFG GSG GGF N
Sbjct: 24 TLLHHFHSTATVATAARDAETFFINRFKPFPGFPASAAKGFHAKSGPLYFRASTGV-QAEYAVEDYVDE--------KGSEALEISNLGIAPEIVSALKNRGITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKIIRYNAKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPNLDTICVYGGTPISRQMRQLDYGVDVAVGTPGRIIDLLKRGALNLSEVQFLVLDEADQMLQVGFAEDVETILERLPANRQSMMFSATMPNWIRSLTQKHLKNPLTIDLVGENDQKLAEGISLYSIAADMRGKAAILGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFKCEALHGDISQSQRERTLSGFRDGHFNILVATDVAARGLDIPSVDLVIHYELPNTSETFVHRTGRTGRAGRKGSAILIYTQDQNRAVKVIEREVGCRFSELPRIEVDGGSTGMFNDIGAGVRFG--GARDRG-YGDMGFGRSGRQAEYGFGRSGGN---RGPGFGRSGSQFSDEMGGYGGRFGSNNRSGNFGGSASSRSSGFGNFGSRRTSGFGDFGSGNPGGFKDN 587
BLAST of XM_017386937.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0B0N082 ((DEAD-box ATP-dependent RNA helicase 53-like protein {ECO:0000313|EMBL:KHG04586.1}))
HSP 1 Score: 694.886 bits (1792), Expect = 0.000e+0
Identity = 367/575 (63.83%), Postives = 429/575 (74.61%), Query Frame = 0
Match: A0A0B0N082 ((DEAD-box ATP-dependent RNA helicase 53-like protein {ECO:0000313|EMBL:KHG04586.1}))
HSP 1 Score: 694.886 bits (1792), Expect = 0.000e+0
Identity = 367/575 (63.83%), Postives = 429/575 (74.61%), Query Frame = 0
Query: 45 TLTHNIHTANRIINTAKAPSELSLRRW-------------VHSDI-VLNVRATPSVSRISAAVDDFSDEDVKKGGASKDEEGLEISKLGIASEIVDCLAKKGITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKIIQFNKKHGQGRYPLALCLAPTRELASQVEKEFYESCP-LETICAYGGTPISRQMSALDHGADVVVGTPGRVIDLIKRGSLNLSEVQFVVLDEADQMLNVGFADDVETILKNLPLNRQTLMFSATMPKWIVQLTRKYLKNPLTIDLVGENDQKLAEGITLYSIVSDMHDKPGILGPLVTEHANGGKCIVFTQTKRDADRLAYAMKKSFPCEPLHGDITQAQRERTLAGFRNGQFNVLIATDVAARGLDVPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGRAILIHSSNQLRDVKTIERDVGCRFSELSSIKVDAGARDMFREMGSGSRFGSSGSRDGGRFGNSGYGRSSSYGGFGSGGSGGSSYGRS--------GGFGGSSGRSSGGFGGYGGQSSSRSSGGFGESGSRSSGGFGGSGSGRSGGFGSN 596
TL H+ H+ + A+ + R+ H+ L RA+ V + AV+D+ DE K E LEIS LGIA EIV L +GITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKII++N KHG+GR PL L LAPTRELA QVEKEF+ES P L+TIC YGGTPISRQM LD+G DV VGTPGR+IDL+KRG+LNLSEVQF+VLDEADQML VGFA+DVETIL+ LP NRQ++MFSATMP WI LT+K+LKNPLTIDLVGENDQKLAEGI+LYSI +DMH K ILGPL+TEHA GGKCIVFTQTKRDADRLAYAM ++F CE LHGDI+Q+QRERTL+GFR+G FN+L+ATDVAARGLD+P+VDLVIHYELPN+SE FVHR+GRTGRAG+KG AILI++ +Q R VK IER+VGCRFSEL I+VD G+ MF ++G+G RFG + R G G GR + YG SGG+ G +GRS GG+GG G S+ G +GG +SSR S GFG GSR + GFG GSG GGF N
Sbjct: 24 TLLHHFHSTATVATAARDAETFFINRFKPFPGFPASAAKGFHAKSGPLYFRASTGV-QAEYAVEDYVDE--------KGSEALEISNLGIAPEIVSALKNRGITKLFPIQRAVLEPAMQGRDMIGRAKTGTGKTLAFGIPIMDKIIRYNAKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPNLDTICVYGGTPISRQMRQLDYGVDVAVGTPGRIIDLLKRGALNLSEVQFLVLDEADQMLQVGFAEDVETILERLPANRQSMMFSATMPNWIRSLTQKHLKNPLTIDLVGENDQKLAEGISLYSIAADMHGKAAILGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFKCEALHGDISQSQRERTLSGFRDGHFNILVATDVAARGLDIPSVDLVIHYELPNTSETFVHRTGRTGRAGRKGSAILIYTQDQNRAVKVIEREVGCRFSELPRIEVDGGSTGMFNDIGAGGRFGGARDRGYGDMGFGRSGRQAEYGFGRSGGNRGPGFGRSGSQFSDEMGGYGGRFG-SNNRSGNFGGSASSRPS-GFGNFGSRRTSGFGDFGSGNPGGFKDN 587
| Match Name | Stats | Description |
|---|---|---|
| A0A6P5ZEJ6 | E-Value: 0.000e+0, PID: 66.67 | (DEAD-box ATP-dependent RNA helicase 53, mitochond... [more] |
| A0A1U8PLY1 | E-Value: 0.000e+0, PID: 63.89 | (DEAD-box ATP-dependent RNA helicase 53-like {ECO:... [more] |
| A0A1U8PMC0 | E-Value: 0.000e+0, PID: 68.17 | (DEAD-box ATP-dependent RNA helicase 53-like {ECO:... [more] |
| A0A5D2QUE3 | E-Value: 0.000e+0, PID: 61.65 | (Uncharacterized protein {ECO:0000313|EMBL:TYI3105... [more] |
| A0A6P6BC24 | E-Value: 0.000e+0, PID: 65.15 | (DEAD-box ATP-dependent RNA helicase 53, mitochond... [more] |
| A0A061DK67 | E-Value: 0.000e+0, PID: 58.58 | (DEAD-box ATP-dependent RNA helicase 53 isoform 1 ... [more] |
| A0A5D2GRN4 | E-Value: 0.000e+0, PID: 63.21 | (Uncharacterized protein {ECO:0000313|EMBL:TYH2037... [more] |
| A0A6J1BN00 | E-Value: 0.000e+0, PID: 60.83 | (DEAD-box ATP-dependent RNA helicase 53-like {ECO:... [more] |
| A0A5J5W0J2 | E-Value: 0.000e+0, PID: 63.04 | (Uncharacterized protein {ECO:0000313|EMBL:KAB2085... [more] |
| A0A0B0N082 | E-Value: 0.000e+0, PID: 63.83 | (DEAD-box ATP-dependent RNA helicase 53-like prote... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |