Resource Type:
Polypeptide
Name:
XM_017383049.1
Identifier:
XM_017383049.1-protein
Sequence:
MYEAQQHFVDLDDSAAANSWLAAGQDRSVDSPLLRRTHDSFSAAPASNLD
RNLFNDLVEIVPLVQSLIDRKAKTSFTRRGSVIYTKTPARESISKASELK
GKHAAQSIPTKKRRDLGDKDQHKNAGDNKDGCANDFSFPQISTSENNEEL
LALRDEMVDLQRKLSEKDELLKSAEISEGKLKSEIAKLDELKQQVSEKDF
VAKSTQQQLSDAKIMLADKQAALEKLRWEAMTSNTLAEKLQEDVNTMQAE
MSSIMILCEGLRKNNDDVSTEDYDVPLNHIDHIPDDVDSLDVLEMQRLAD
AQEAYIAAVAAAKESQDEYSIAAARSARLHLLSLVIKN
Sequence Length:
338
Sequence Checksum:
8170390787d77a2bd92f52d2cc463dfb
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017383049.1, derives from mRNA, XM_017383049.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017383049.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017383049.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A832 ((Uncharacterized protein {ECO:0000313|EMBL:MPA52255.1}))
HSP 1 Score: 354.369 bits (908), Expect = 5.118e-119
Identity = 211/350 (60.29%), Postives = 257/350 (73.43%), Query Frame = 0
Match: A0A5B7A832 ((Uncharacterized protein {ECO:0000313|EMBL:MPA52255.1}))
HSP 1 Score: 354.369 bits (908), Expect = 5.118e-119
Identity = 211/350 (60.29%), Postives = 257/350 (73.43%), Query Frame = 0
Query: 1 MYEAQQHFVDLDDSAA---ANSWLAAGQDRSVDSPLLRRTHDSFS-------AAPASNLDRNLFNDLVEIVPLVQSLIDRKAKTSFTRRGSVIYTKTPARESIS-KASELKGKHAAQSIPTKKRRDLGDKDQHKNAGDNKDGCANDFSFPQ---ISTSENNEELLALRDEMVDLQRKLSEKDELLKSAEISEGKLKSEIAKLDELKQQVSEKDFVAKSTQQQLSDAKIMLADKQAALEKLRWEAMTSNTLAEKLQEDVNTMQAEMSSIMILCEGLRKNNDDVSTEDYDVPLNHIDHIPDDVDSLDVLEMQRLADAQEAYIAAVAAAKESQDEYSIAAARSARLHLLSLVI 336
MYE Q HF+DL D+A SWL+ G+D S SP RT S S A N+DR LFNDLVEIVPLVQSLI+RKA TSFTR GS+IYTKTP+ ES+S K +E KGK+AAQSIPTKKRRD GDKDQ +NAG N+DGC +DFS + T + EEL+ALR+++ DLQRKL EKDELL+SAEIS+ ++ S A+LDELK Q ++KD + KSTQ QLSDAK LADKQAALEKL+WEAM SN EKLQED+++MQ E+S M L EGL+K++ + +EDYDV H DH+P D LD +EMQ++ +A++ YIAAVAAAKE QDE SIAAA SARL L S V+
Sbjct: 1 MYEPQ-HFIDLLDNADFGDPKSWLS-GEDHS-SSPTHHRTQSSLSNATTATTTGTAGNVDRVLFNDLVEIVPLVQSLINRKADTSFTRHGSMIYTKTPSEESLSRKITEPKGKNAAQSIPTKKRRDHGDKDQSRNAG-NQDGCDDDFSIFSSRALPTEKYKEELVALREQVEDLQRKLLEKDELLRSAEISKNQMTSIHAELDELKHQAAKKDSLIKSTQLQLSDAKFKLADKQAALEKLQWEAMMSNKKVEKLQEDLDSMQGEISLFMQLFEGLKKSDSTIFSEDYDVTPYHFDHLP-YTDDLDEMEMQKIEEARDVYIAAVAAAKERQDEDSIAAAASARLRLQSFVL 345
BLAST of XM_017383049.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A979 ((Uncharacterized protein {ECO:0000313|EMBL:MPA52256.1}))
HSP 1 Score: 352.058 bits (902), Expect = 2.616e-118
Identity = 213/350 (60.86%), Postives = 262/350 (74.86%), Query Frame = 0
Match: A0A5B7A979 ((Uncharacterized protein {ECO:0000313|EMBL:MPA52256.1}))
HSP 1 Score: 352.058 bits (902), Expect = 2.616e-118
Identity = 213/350 (60.86%), Postives = 262/350 (74.86%), Query Frame = 0
Query: 1 MYEAQQHFVDLDDSAA---ANSWLAAGQDRSVDSPLLRRTHDSFSAAPASN-----LDRNLFNDLVEIVPLVQSLIDRKAKTSFTRRGSVIYTKTPARESISKA-SELKGKHAAQSIPTKKRRDLGDKDQHKNAGDNKDGCANDFSFPQ---ISTSENNEELLALRDEMVDLQRKLSEKDELLKSAEISEGKLKSEIAKLDELKQQVSEKDFVAKSTQQQLSDAKIMLADKQAALEKLRWEAMTSNTLAEKLQEDVNTMQAEMSSIMILCEGLRKNNDDVSTEDYDVPLNHIDHIPDDVDSLDVLEMQRLADAQEAYIAAVAAAKESQDEYSIAAARSARLHLLSLVIKN 338
MYE Q HFVDL D+A SWL+ G+D S+ SP L RT S S A + +DR LF DLVEIVPLVQSLIDRKA TSFTRRGS+IYTKTP+RES+SK +E KGK+ AQSIPTKKRRD G KNAG+NKDGCA+ FS + T ++ EEL+ALR+++ DLQRKL EKDELL+S E+S+ ++ S KLDELK Q +EKD + KSTQ QLSDAKI LADKQAALEKL+WEAMTSN AE+L+ED+++M+ E+SS M L E L+K++ +S+EDYDV H+DH+ +D LD +EMQ++ A+EAYIAAVAAAKE QDE SIAAA SARLHL S V++
Sbjct: 1 MYEPQ-HFVDLQDNAGFGDPKSWLS-GEDHSL-SPALYRTQSSLSNATTTTGTAGNVDRVLFKDLVEIVPLVQSLIDRKANTSFTRRGSMIYTKTPSRESLSKKITEQKGKNVAQSIPTKKRRDQG-----KNAGNNKDGCADGFSIFSSRALPTEKDREELIALREQLEDLQRKLLEKDELLQSVEVSKNQMTSIHVKLDELKHQTAEKDSLIKSTQLQLSDAKIKLADKQAALEKLQWEAMTSNKKAEELEEDLDSMRGEISSFMQLFEVLKKSDSAISSEDYDVTPYHLDHLS-YIDDLDEMEMQKMEAAREAYIAAVAAAKERQDEDSIAAAASARLHLQSFVLRT 341
BLAST of XM_017383049.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A7I3 ((Uncharacterized protein {ECO:0000313|EMBL:MPA52254.1}))
HSP 1 Score: 351.288 bits (900), Expect = 6.327e-118
Identity = 213/348 (61.21%), Postives = 261/348 (75.00%), Query Frame = 0
Match: A0A5B7A7I3 ((Uncharacterized protein {ECO:0000313|EMBL:MPA52254.1}))
HSP 1 Score: 351.288 bits (900), Expect = 6.327e-118
Identity = 213/348 (61.21%), Postives = 261/348 (75.00%), Query Frame = 0
Query: 1 MYEAQQHFVDLDDSAA---ANSWLAAGQDRSVDSPLLRRTHDSFSAAPASN-----LDRNLFNDLVEIVPLVQSLIDRKAKTSFTRRGSVIYTKTPARESISKA-SELKGKHAAQSIPTKKRRDLGDKDQHKNAGDNKDGCANDFSF---PQISTSENNEELLALRDEMVDLQRKLSEKDELLKSAEISEGKLKSEIAKLDELKQQVSEKDFVAKSTQQQLSDAKIMLADKQAALEKLRWEAMTSNTLAEKLQEDVNTMQAEMSSIMILCEGLRKNNDDVSTEDYDVPLNHIDHIPDDVDSLDVLEMQRLADAQEAYIAAVAAAKESQDEYSIAAARSARLHLLSLVI 336
MYE Q HFVDL D+A SWL+ G+D S+ SP L RT S S A + +DR LF DLVEIVPLVQSLIDRKA TSFTRRGS+IYTKTP+RES+SK +E KGK+ AQSIPTKKRRD G KNAG+NKDGCA+ FS + T ++ EEL+ALR+++ DLQRKL EKDELL+S E+S+ ++ S KLDELK Q +EKD + KSTQ QLSDAKI LADKQAALEKL+WEAMTSN AE+L+ED+++M+ E+SS M L E L+K++ +S+EDYDV H+DH+ +D LD +EMQ++ A+EAYIAAVAAAKE QDE SIAAA SARLHL S V+
Sbjct: 1 MYEPQ-HFVDLQDNAGFGDPKSWLS-GEDHSL-SPALYRTQSSLSNATTTTGTAGNVDRVLFKDLVEIVPLVQSLIDRKANTSFTRRGSMIYTKTPSRESLSKKITEQKGKNVAQSIPTKKRRDQG-----KNAGNNKDGCADGFSIFSSRALPTEKDREELIALREQLEDLQRKLLEKDELLQSVEVSKNQMTSIHVKLDELKHQTAEKDSLIKSTQLQLSDAKIKLADKQAALEKLQWEAMTSNKKAEELEEDLDSMRGEISSFMQLFEVLKKSDSAISSEDYDVTPYHLDHL-SYIDDLDEMEMQKMEAAREAYIAAVAAAKERQDEDSIAAAASARLHLQSFVL 339
BLAST of XM_017383049.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0H1I3 ((Movement protein binding protein 2C {ECO:0000313|EMBL:GFZ16959.1}))
HSP 1 Score: 347.821 bits (891), Expect = 1.307e-116
Identity = 203/343 (59.18%), Postives = 251/343 (73.18%), Query Frame = 0
Match: A0A7J0H1I3 ((Movement protein binding protein 2C {ECO:0000313|EMBL:GFZ16959.1}))
HSP 1 Score: 347.821 bits (891), Expect = 1.307e-116
Identity = 203/343 (59.18%), Postives = 251/343 (73.18%), Query Frame = 0
Query: 1 MYEAQQHFVDLDDSAAA---NSWLAAGQDRSVDSPLLRRTHDSFS----AAPASNLDRNLFNDLVEIVPLVQSLIDRKAKTSFTRRGSVIYTKTPARESIS-KASELKGKHAAQSIPTKKRRDLGDKDQHKNAGDNKDGCANDFSFPQ---ISTSENNEELLALRDEMVDLQRKLSEKDELLKSAEISEGKLKSEIAKLDELKQQVSEKDFVAKSTQQQLSDAKIMLADKQAALEKLRWEAMTSNTLAEKLQEDVNTMQAEMSSIMILCEGLRKNNDDVSTE-DYDVPLNHIDHIPDDVDSLDVLEMQRLADAQEAYIAAVAAAKESQDEYSIAAARSARLHL 331
MYE Q HFVDL D+A NSWL+ +D S + LRRTH S S A +SN+DR LFNDLVEIVPLVQSLIDRKAK+SFTRRGS+IYTKTP+RE+++ K + KG++ QSIPTKKRRD DKDQ NA +N+DG ++ FS + T ++ EEL+ALR+++ DLQRKL EKDELLKSAEIS+ ++ S KL+ELK Q +EKD + KSTQ QLSDAKI LADKQAALEKL+WEAM SN +L+ D+ +MQ E+SS M+L EGL KN + E DYDV H++H+P VD D EMQ + +A+EAY+AAVA+AKE QDE SIA A SARL L
Sbjct: 1 MYEPQ-HFVDLQDNAGYGDQNSWLST-EDHSPSAAALRRTHSSLSNAIATATSSNVDRVLFNDLVEIVPLVQSLIDRKAKSSFTRRGSMIYTKTPSRETLAMKIIDTKGRNVTQSIPTKKRRDHADKDQGNNASNNEDGSSDSFSIFSSRAVPTEKDREELIALREQIEDLQRKLLEKDELLKSAEISKTQMNSVHVKLEELKLQAAEKDSLIKSTQLQLSDAKIKLADKQAALEKLQWEAMQSNRKVARLEVDLGSMQEEISSFMLLFEGLAKNPSIMPAEKDYDVTPYHLNHLPPTVD-WDNKEMQEMEEAREAYVAAVASAKEKQDEDSIAVAASARLRL 340
BLAST of XM_017383049.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7SIP0 ((Uncharacterized protein {ECO:0000313|EMBL:CBI15351.3}))
HSP 1 Score: 346.665 bits (888), Expect = 5.308e-116
Identity = 207/349 (59.31%), Postives = 269/349 (77.08%), Query Frame = 0
Match: D7SIP0 ((Uncharacterized protein {ECO:0000313|EMBL:CBI15351.3}))
HSP 1 Score: 346.665 bits (888), Expect = 5.308e-116
Identity = 207/349 (59.31%), Postives = 269/349 (77.08%), Query Frame = 0
Query: 1 MYEAQQHFVDLDDSAA---ANSWLAAGQDRSVDSPLLRRTHDSFSAAPAS----NLDRNLFNDLVEIVPLVQSLIDRKAKTSFTRRGSVIYTKTPARESISKA-SELKGKHAAQSIPTKKRRDLGDKDQHKNAGDNKDGCANDFSFPQ---ISTSENNEELLALRDEMVDLQRKLSEKDELLKSAEISEGKLKSEIAKLDELKQQVSEKDFVAKSTQQQLSDAKIMLADKQAALEKLRWEAMTSNTLAEKLQEDVNTMQAEMSSIMILCEGLRKNNDDVSTEDYDVPLNHIDHIPDDVDSLDVLEMQRLADAQEAYIAAVAAAKESQDEYSIAAARSARLHLLSLVIKN 338
M+E Q HF+DL D+++ SWL+ G D S SP+ RRT S S+A A+ N+DR LFNDLVEIVPLVQSLIDRKA +SFTR G+V YTKTP+RES+S+ SELKG++ AQSIPTKKRRD G+KDQ +N +N+DGCA+ FS +++ ++ EEL+ALR+++ DLQRKL+EKDELLKSAEIS+ ++ + KLDELKQQV+EKD + KSTQ QLSDAKI LADKQAALEK++WEAMTSN EKLQED+ +MQA++SS M+L EGL KN+ + +E YD+ H+ H+P +D LD + Q++ +A++AY+AAVAAAKE+QDE SIA A ++RLHL S V KN
Sbjct: 1 MFEPQ-HFMDLHDNSSLGDPKSWLS-GDDNS--SPIHRRTQSSLSSASAAGTAANVDRLLFNDLVEIVPLVQSLIDRKASSSFTRVGAVTYTKTPSRESLSRRFSELKGRNTAQSIPTKKRRDHGEKDQGRNGSNNQDGCADGFSLFSSRAVASEKDKEELIALREQVEDLQRKLAEKDELLKSAEISKSQMSAVHDKLDELKQQVAEKDSLIKSTQLQLSDAKIKLADKQAALEKIQWEAMTSNRKVEKLQEDLESMQADISSFMLLFEGLTKNDSTIRSESYDITPYHLGHLP-PIDDLDEIGAQKMEEARKAYVAAVAAAKENQDEESIALAANSRLHLQSFVFKN 344
BLAST of XM_017383049.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P3ZU88 ((protein MICROTUBULE BINDING PROTEIN 2C {ECO:0000313|RefSeq:XP_015883281.1}))
HSP 1 Score: 345.51 bits (885), Expect = 7.852e-116
Identity = 203/352 (57.67%), Postives = 258/352 (73.30%), Query Frame = 0
Match: A0A6P3ZU88 ((protein MICROTUBULE BINDING PROTEIN 2C {ECO:0000313|RefSeq:XP_015883281.1}))
HSP 1 Score: 345.51 bits (885), Expect = 7.852e-116
Identity = 203/352 (57.67%), Postives = 258/352 (73.30%), Query Frame = 0
Query: 1 MYEAQQHFVDLDDSAAA----NSWLAAGQDRSVDSPLLRRTHDSFSAAPA-------SNLDRNLFNDLVEIVPLVQSLIDRKAKTSFTRRGSVIYTKTPARESISKA-SELKGKHAAQSIPTKKRRDLGDKDQHKNAGDNKDGCANDFSF---PQISTSENNEELLALRDEMVDLQRKLSEKDELLKSAEISEGKLKSEIAKLDELKQQVSEKDFVAKSTQQQLSDAKIMLADKQAALEKLRWEAMTSNTLAEKLQEDVNTMQAEMSSIMILCEGLRKNNDDVSTEDYDVPLNHIDHIPDDVDSLDVLEMQRLADAQEAYIAAVAAAKESQDEYSIAAARSARLHLLSLVIK 337
MYE QQHFVDL D+ + NSWL+ S SP RT S SA A +NLDR LFNDLVEIVPLVQSLIDRKA +SFTRRGS++YTKTP+RES+SK +E+KG++AAQSIP +K++D GDKDQ KN +++D A +FS ++ ++ EEL LR ++ DLQRKLSEKDELLKSAE+++ +L + AKL+EL Q EKD + +STQQQLSDAKI LADKQAALEK++WEAMTS T EKLQE++N M+ E+SS M++ EGL K N V EDYDV ++DH+P +D LD +EMQ++ +A++AYIAAVAAAK++QDE SI AA ARLHL S V +
Sbjct: 1 MYE-QQHFVDLQDNGSGYGDPNSWLSG---ESNSSPTHHRTQSSLSAVGAGAGVATNANLDRVLFNDLVEIVPLVQSLIDRKASSSFTRRGSMVYTKTPSRESLSKKITEVKGRNAAQSIPARKKKDHGDKDQGKNGCNDQD--AENFSIFSSRALAADKDREELDVLRGQVEDLQRKLSEKDELLKSAEVTKNQLNAVHAKLNELNHQAGEKDSLIRSTQQQLSDAKIKLADKQAALEKIQWEAMTSGTKVEKLQEELNLMRGEISSFMMVFEGLMKTNTTVYAEDYDVLPCNLDHLP-PIDDLDGMEMQKMEEARQAYIAAVAAAKKNQDEESIVAAAKARLHLQSFVFR 345
BLAST of XM_017383049.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2K2ASX4 ((Uncharacterized protein {ECO:0000313|EMBL:RQO89211.1}))
HSP 1 Score: 341.658 bits (875), Expect = 3.953e-114
Identity = 193/347 (55.62%), Postives = 252/347 (72.62%), Query Frame = 0
Match: A0A2K2ASX4 ((Uncharacterized protein {ECO:0000313|EMBL:RQO89211.1}))
HSP 1 Score: 341.658 bits (875), Expect = 3.953e-114
Identity = 193/347 (55.62%), Postives = 252/347 (72.62%), Query Frame = 0
Query: 1 MYEAQQHFVDLDDSAA----ANSWLAAGQDRSVDSPLLRRTHDSFSAAPASNLDRNLFNDLVEIVPLVQSLIDRKAKTSFTRRGSVIYTKTPARESISKAS-ELKGKHAAQSIPTKKRRDLGDKDQHKNAGDNKDGCANDF----SFPQISTSENNEELLALRDEMVDLQRKLSEKDELLKSAEISEGKLKSEIAKLDELKQQVSEKDFVAKSTQQQLSDAKIMLADKQAALEKLRWEAMTSNTLAEKLQEDVNTMQAEMSSIMILCEGLRKNNDDVSTEDYDVPLNHIDHIPDDVDSLDVLEMQRLADAQEAYIAAVAAAKESQDEYSIAAARSARLHLLSLVIKN 338
MYEAQ+ FVDL +++ SWL+ + S SP H +++ N+DR LFNDLVE+VPLVQSLIDRK TSFTRRGSVIYTKTP+RES+SK + +G++ QSIPTKK+ D GDKDQ K A DN+D A+ F S + T ++ EEL+ALR+++ DLQRKL EKDELLKSAE+S+ ++ + A+ DE+K QV+EKD + KSTQ QLS+AKI LADKQAALEKL+WEAMTSN E LQ++++++Q +SS M++ E L KNN EDYD+ ++D +P D+D LD EMQ++ +A+EAYIAAVA+AKE QDE SIAAA SARLHL S V ++
Sbjct: 1 MYEAQR-FVDLQQNSSNFGDPKSWLSEDSN-SNSSPTHHPNHSQLASSAGGNVDRVLFNDLVEMVPLVQSLIDRKVSTSFTRRGSVIYTKTPSRESLSKKMIDPRGRNTCQSIPTKKKMDHGDKDQGKTANDNQD--ADSFAILSSSRAVPTGKDAEELIALREQVEDLQRKLLEKDELLKSAEVSKNQMNAVHAEFDEVKLQVAEKDSLIKSTQLQLSNAKIKLADKQAALEKLQWEAMTSNQKVETLQQELDSIQGGISSFMLVFENLTKNNSIPYAEDYDIKPCYLDQLP-DIDDLDDREMQKMEEAREAYIAAVASAKEKQDEKSIAAAASARLHLQSFVFRS 342
BLAST of XM_017383049.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6M2ED76 ((Uncharacterized protein {ECO:0000313|EMBL:NUU83247.1}))
HSP 1 Score: 340.887 bits (873), Expect = 7.769e-114
Identity = 192/347 (55.33%), Postives = 253/347 (72.91%), Query Frame = 0
Match: A0A6M2ED76 ((Uncharacterized protein {ECO:0000313|EMBL:NUU83247.1}))
HSP 1 Score: 340.887 bits (873), Expect = 7.769e-114
Identity = 192/347 (55.33%), Postives = 253/347 (72.91%), Query Frame = 0
Query: 1 MYEAQQHFVDLDDSAA----ANSWLAAGQDRSVDSPLLRRTHDSFSAAPASNLDRNLFNDLVEIVPLVQSLIDRKAKTSFTRRGSVIYTKTPARESISKAS-ELKGKHAAQSIPTKKRRDLGDKDQHKNAGDNKDGCANDFSFPQ----ISTSENNEELLALRDEMVDLQRKLSEKDELLKSAEISEGKLKSEIAKLDELKQQVSEKDFVAKSTQQQLSDAKIMLADKQAALEKLRWEAMTSNTLAEKLQEDVNTMQAEMSSIMILCEGLRKNNDDVSTEDYDVPLNHIDHIPDDVDSLDVLEMQRLADAQEAYIAAVAAAKESQDEYSIAAARSARLHLLSLVIKN 338
MYEAQ+ FVDL +++ SWL+ + S SP H +++ + N+DR LFNDLVE+VPLVQSLIDRK TSFTRRGSVIYTKTP+RES+SK + +G++ QSIPTKK+ D GDKDQ K A DN+D A+ F+ ++T ++ EEL+ALR+++ DLQRKL EKDELLKSAEIS+ ++ + A+ DE+K QV+EKD + KSTQ QLS+AKI LADKQAALEKL+WE MTSN E LQ++++++Q +SS M++ E L KNN EDYD+ ++D +P D+D LD EMQ++ +A+EAYIAAVA+AKE QDE SIAAA SARLHL S V ++
Sbjct: 1 MYEAQR-FVDLQQNSSNFGDPKSWLSEDSN-SNSSPTHLPNHSQLASSASGNVDRVLFNDLVEMVPLVQSLIDRKVSTSFTRRGSVIYTKTPSRESLSKKMIDPRGRNTCQSIPTKKKMDHGDKDQGKTANDNQD--ADSFAILSSSRAVATGKDAEELIALREQVEDLQRKLLEKDELLKSAEISKNQMNAVHAEFDEVKLQVAEKDSLIKSTQLQLSNAKIKLADKQAALEKLQWEVMTSNQKVETLQQELDSIQGGISSFMLVFENLTKNNSIPYAEDYDIKPCYLDQLP-DIDDLDDREMQKMEEAREAYIAAVASAKEKQDENSIAAAASARLHLQSFVFRS 342
BLAST of XM_017383049.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4U5NPJ1 ((Uncharacterized protein {ECO:0000313|EMBL:TKR85669.1}))
HSP 1 Score: 339.347 bits (869), Expect = 5.667e-113
Identity = 191/346 (55.20%), Postives = 251/346 (72.54%), Query Frame = 0
Match: A0A4U5NPJ1 ((Uncharacterized protein {ECO:0000313|EMBL:TKR85669.1}))
HSP 1 Score: 339.347 bits (869), Expect = 5.667e-113
Identity = 191/346 (55.20%), Postives = 251/346 (72.54%), Query Frame = 0
Query: 1 MYEAQQHFVDLDDSAA----ANSWLAAGQDRSVDSPLLRRTHDSFSAAPASNLDRNLFNDLVEIVPLVQSLIDRKAKTSFTRRGSVIYTKTPARESISKAS-ELKGKHAAQSIPTKKRRDLGDKDQHKNAGDNKDGCANDFSFPQ----ISTSENNEELLALRDEMVDLQRKLSEKDELLKSAEISEGKLKSEIAKLDELKQQVSEKDFVAKSTQQQLSDAKIMLADKQAALEKLRWEAMTSNTLAEKLQEDVNTMQAEMSSIMILCEGLRKNNDDVSTEDYDVPLNHIDHIPDDVDSLDVLEMQRLADAQEAYIAAVAAAKESQDEYSIAAARSARLHLLSLVIK 337
MYEAQ+ FVDL +++ SWL+ + S SP H +++ + N+DR LFNDLVE+VPLVQSLIDRK TSFTRRGSVIYTKTP+RES+SK + +G++ QSIPTKK+ D GDKDQ K A DN+D A+ F+ + T ++ EEL+ALR+++ DLQRKL EKDELLKSAE+S+ ++ + A+ DE+K QV+EKD + KSTQ QLS+AKI LADKQAALEKL+WE MTSN E LQ++++++Q +SS M++ E L KNN EDYD+ ++D +P D+D LD EMQ++ +A+EAYIAAVA+AKE QDE SIAAA SARLHL S V +
Sbjct: 1 MYEAQR-FVDLQQNSSNFGDPKSWLSEDSN-SNSSPTHLPNHSQLASSASGNVDRVLFNDLVEMVPLVQSLIDRKVSTSFTRRGSVIYTKTPSRESLSKKMIDPRGRNTCQSIPTKKKMDHGDKDQGKTANDNQD--ADSFAILSSSRAVPTGKDAEELIALREQVEDLQRKLLEKDELLKSAEVSKNQMNAVHAEFDEVKLQVAEKDSLIKSTQLQLSNAKIKLADKQAALEKLQWEVMTSNQKVETLQQELDSIQGGISSFMLVFENLTKNNSIPYAEDYDIKPCYLDQLP-DIDDLDDREMQKMEEAREAYIAAVASAKEKQDENSIAAAASARLHLQSFVFR 341
BLAST of XM_017383049.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834GPQ8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7135232.1}))
HSP 1 Score: 329.331 bits (843), Expect = 1.460e-109
Identity = 192/341 (56.30%), Postives = 244/341 (71.55%), Query Frame = 0
Match: A0A834GPQ8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7135232.1}))
HSP 1 Score: 329.331 bits (843), Expect = 1.460e-109
Identity = 192/341 (56.30%), Postives = 244/341 (71.55%), Query Frame = 0
Query: 1 MYEAQQHFVDLDDSAAANSWLAAGQDRSVDSPLLRRTHDSFSAAPASNLDRNLFNDLVEIVPLVQSLIDRKAKTSFTRRGSVIYTKTPARESI-SKASELKGKHAAQSIPTKKRRDLGDKDQHKNAGDNKDGCANDFSFPQ---ISTSENNEELLALRDEMVDLQRKLSEKDELLKSAEISEGKLKSEIAKLDELKQQVSEKDFVAKSTQQQLSDAKIMLADKQAALEKLRWEAMTSNTLAEKLQEDVNTMQAEMSSIMILCEGLRKNNDDVSTEDYDVPLNHIDHIPDDVDSLDVLEMQRLADAQEAYIAAVAAAKESQDEYSIAAARSARLHLLSLVIK 337
MYE Q HF DL ++++ G + SP T S S A SN+DR LFNDLVEIVPLVQSLIDRKA +SFTRRG++IYTKTP+RES+ K S+ KG++AAQSIPTKKRRD DKDQ +N+ +N+D C + FS + + ++ EEL+ALR+++ DLQRKL EKDELLKSAEIS+ + S AKL+E Q +EKD + KSTQQQLSD K+ LADKQAALEKL+WEAMTSN E LQED+++M+ E+SS M+L EGL KN +S E YDV + + + D D +EMQ + +A+EAYIAAVA A+E QDE SIAAA SAR++L S V +
Sbjct: 1 MYEPQ-HFADLQENSS-------GCGEVLLSPSAHPTQSSLSNAAPSNVDRVLFNDLVEIVPLVQSLIDRKASSSFTRRGTMIYTKTPSRESLYRKISDAKGRNAAQSIPTKKRRDPTDKDQGRNSSNNQDECCDSFSIFSSRALQSDKDGEELIALREQVEDLQRKLLEKDELLKSAEISKTQFSSIHAKLEE---QAAEKDSLIKSTQQQLSDTKVKLADKQAALEKLQWEAMTSNRKVELLQEDLDSMRGEISSFMLLVEGLAKNPSTMSAEGYDVTPYYSSYFHQE-DDWDEVEMQEMEEAREAYIAAVATAREKQDEDSIAAAASARIYLQSFVFR 329
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7A832 | E-Value: 5.118e-119, PID: 60.29 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5225... [more] |
| A0A5B7A979 | E-Value: 2.616e-118, PID: 60.86 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5225... [more] |
| A0A5B7A7I3 | E-Value: 6.327e-118, PID: 61.21 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5225... [more] |
| A0A7J0H1I3 | E-Value: 1.307e-116, PID: 59.18 | (Movement protein binding protein 2C {ECO:0000313|... [more] |
| D7SIP0 | E-Value: 5.308e-116, PID: 59.31 | (Uncharacterized protein {ECO:0000313|EMBL:CBI1535... [more] |
| A0A6P3ZU88 | E-Value: 7.852e-116, PID: 57.67 | (protein MICROTUBULE BINDING PROTEIN 2C {ECO:00003... [more] |
| A0A2K2ASX4 | E-Value: 3.953e-114, PID: 55.62 | (Uncharacterized protein {ECO:0000313|EMBL:RQO8921... [more] |
| A0A6M2ED76 | E-Value: 7.769e-114, PID: 55.33 | (Uncharacterized protein {ECO:0000313|EMBL:NUU8324... [more] |
| A0A4U5NPJ1 | E-Value: 5.667e-113, PID: 55.20 | (Uncharacterized protein {ECO:0000313|EMBL:TKR8566... [more] |
| A0A834GPQ8 | E-Value: 1.460e-109, PID: 56.30 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7135... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |