Resource Type:
Polypeptide
Name:
XM_017387870.1
Identifier:
XM_017387870.1-protein
Sequence:
MKTLGSEEFDVETGEFDNEREKLIRSSRVVQINNQALLSGLAYCLSSCSM
ILVNKYVLSSYDFSAGISLMLYQNFVSVLIVSMLSTLGVISTEPLTWRLI
KVWLPVNVIFVGMLVTSMFSLRYINVAMVTVLKNVTNVITAVGEMYLFSK
HHDNRVWVALFLMIISAISGGFTDLSFHAIGYTWQIINCFLTASYSLTLR
RVMDTAKVVTKSGNLNEFSMVLLNNTLSLPLGLLLIFVFNEVDYLATTPL
LRLPTFWLVITLSGFLGLAISFTSMWFLHQTSATTYSLVGSLNKIPLSVA
GILLFKVPTSLENSASILFGLVAGVFFARAKVRERSQS
Sequence Length:
338
Sequence Checksum:
e6c815b99e413b5d1e9ea8071c312a25
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017387870.1, derives from mRNA, XM_017387870.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017387870.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017387870.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZJR7 (TPT domain-containing protein {ECO:0000259|Pfam:PF03151})
HSP 1 Score: 607.06 bits (1564), Expect = 0.000e+0
Identity = 295/337 (87.54%), Postives = 320/337 (94.96%), Query Frame = 0
Match: A0A5B6ZJR7 (TPT domain-containing protein {ECO:0000259|Pfam:PF03151})
HSP 1 Score: 607.06 bits (1564), Expect = 0.000e+0
Identity = 295/337 (87.54%), Postives = 320/337 (94.96%), Query Frame = 0
Query: 1 MKTLGSEEFDVETGEFDNEREKLIRSSRVVQINNQALLSGLAYCLSSCSMILVNKYVLSSYDFSAGISLMLYQNFVSVLIVSMLSTLGVISTEPLTWRLIKVWLPVNVIFVGMLVTSMFSLRYINVAMVTVLKNVTNVITAVGEMYLFSKHHDNRVWVALFLMIISAISGGFTDLSFHAIGYTWQIINCFLTASYSLTLRRVMDTAKVVTKSGNLNEFSMVLLNNTLSLPLGLLLIFVFNEVDYLATTPLLRLPTFWLVITLSGFLGLAISFTSMWFLHQTSATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASILFGLVAGVFFARAKVRERSQ 337
MKTLG++E D+E G+ + +REK +RSSRVV+I NQALLSGLAYC+SSCSMILVNKYVLSSYDF+AGISLM+YQNFVSV+IVSMLS GVISTEPLTWRLIKVWLPVNVIFVGML+TSMFSL+YINVAMVTVLKNVTNV+TAVGEMYLF++ HDNRVW ALFLMIISAISGG TDLSFHAIGYTWQI NCFLTASYSLTLRRVMDTAK VTKSGNLNEFSMVLLNNTLSLPLG+LL+FVFNEVDYL+ TPLLR+P FW+V+T SGFLGLAISFTSMWFLHQT ATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASILFGL+AGVFFARAK+RERSQ
Sbjct: 66 MKTLGNDEIDLEGGKLEKDREKTVRSSRVVKIRNQALLSGLAYCISSCSMILVNKYVLSSYDFNAGISLMVYQNFVSVVIVSMLSFFGVISTEPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVMTAVGEMYLFNRRHDNRVWAALFLMIISAISGGITDLSFHAIGYTWQIFNCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNTLSLPLGILLVFVFNEVDYLSRTPLLRMPIFWMVMTFSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASILFGLLAGVFFARAKMRERSQ 402
BLAST of XM_017387870.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZKK1 ((Putative GDP-mannose transporter GONST1 isoform X1 {ECO:0000313|EMBL:MPA44729.1}))
HSP 1 Score: 604.749 bits (1558), Expect = 0.000e+0
Identity = 295/337 (87.54%), Postives = 319/337 (94.66%), Query Frame = 0
Match: A0A5B6ZKK1 ((Putative GDP-mannose transporter GONST1 isoform X1 {ECO:0000313|EMBL:MPA44729.1}))
HSP 1 Score: 604.749 bits (1558), Expect = 0.000e+0
Identity = 295/337 (87.54%), Postives = 319/337 (94.66%), Query Frame = 0
Query: 1 MKTLGSEEFDVETGEFDNEREKLIRSSRVVQINNQALLSGLAYCLSSCSMILVNKYVLSSYDFSAGISLMLYQNFVSVLIVSMLSTLGVISTEPLTWRLIKVWLPVNVIFVGMLVTSMFSLRYINVAMVTVLKNVTNVITAVGEMYLFSKHHDNRVWVALFLMIISAISGGFTDLSFHAIGYTWQIINCFLTASYSLTLRRVMDTAKVVTKSGNLNEFSMVLLNNTLSLPLGLLLIFVFNEVDYLATTPLLRLPTFWLVITLSGFLGLAISFTSMWFLHQTSATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASILFGLVAGVFFARAKVRERSQ 337
MKTL ++E D+E G+ + +REK +RSSRVV+I NQALLSGLAYC+SSCSMILVNKYVLSSYDF+AGISLM+YQNFVSV+IVSMLS GVISTEPLTWRLIKVWLPVNVIFVGML+TSMFSL+YINVAMVTVLKNVTNV+TAVGEMYLF++ HDNRVW ALFLMIISAISGG TDLSFHAIGYTWQI NCFLTASYSLTLRRVMDTAK VTKSGNLNEFSMVLLNNTLSLPLG+LLIFVFNEVDYL+ TPLLR+P FW+V+T SGFLGLAISFTSMWFLHQT ATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASILFGL+AGVFFARAK+RERSQ
Sbjct: 1 MKTLSNDEIDLEGGKLEKDREKTVRSSRVVKIRNQALLSGLAYCISSCSMILVNKYVLSSYDFNAGISLMVYQNFVSVVIVSMLSFFGVISTEPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVMTAVGEMYLFNRRHDNRVWAALFLMIISAISGGITDLSFHAIGYTWQIFNCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNTLSLPLGILLIFVFNEVDYLSRTPLLRMPIFWMVMTFSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASILFGLLAGVFFARAKMRERSQ 337
BLAST of XM_017387870.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZM14 (TPT domain-containing protein {ECO:0000259|Pfam:PF03151})
HSP 1 Score: 602.438 bits (1552), Expect = 0.000e+0
Identity = 292/337 (86.65%), Postives = 318/337 (94.36%), Query Frame = 0
Match: A0A5B6ZM14 (TPT domain-containing protein {ECO:0000259|Pfam:PF03151})
HSP 1 Score: 602.438 bits (1552), Expect = 0.000e+0
Identity = 292/337 (86.65%), Postives = 318/337 (94.36%), Query Frame = 0
Query: 1 MKTLGSEEFDVETGEFDNEREKLIRSSRVVQINNQALLSGLAYCLSSCSMILVNKYVLSSYDFSAGISLMLYQNFVSVLIVSMLSTLGVISTEPLTWRLIKVWLPVNVIFVGMLVTSMFSLRYINVAMVTVLKNVTNVITAVGEMYLFSKHHDNRVWVALFLMIISAISGGFTDLSFHAIGYTWQIINCFLTASYSLTLRRVMDTAKVVTKSGNLNEFSMVLLNNTLSLPLGLLLIFVFNEVDYLATTPLLRLPTFWLVITLSGFLGLAISFTSMWFLHQTSATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASILFGLVAGVFFARAKVRERSQ 337
MKTL ++E D+E G+ + +REK +RSSRVV+I NQALLSGLAYC+SSCSMILVNKYVLSSYDF+AGISLM+YQNFVSV+IVSMLS GVISTEPLTWRLIKVWLPVNVIFVGML+TSMFSL+YINVAMVTVLKNVTNV+TAVGEMYLF++ HDNRVW ALFLMIISAISGG TDLSFHAIGYTWQI NCFLTASYSLTLRRVMDTAK VTKSGNLNEFSMVLLNNTLSLPLG+LL+FVFNEVDYL+ TPLLR+P FW+V+T SGFLGLAISFTSMWFLHQT ATTYSLVGSLNKIPLS+ GILLFKVPTSLENSASILFGL+AGVFFARAK+RERSQ
Sbjct: 66 MKTLSNDEIDLEGGKLEKDREKTVRSSRVVKIRNQALLSGLAYCISSCSMILVNKYVLSSYDFNAGISLMVYQNFVSVVIVSMLSFFGVISTEPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVMTAVGEMYLFNRRHDNRVWAALFLMIISAISGGITDLSFHAIGYTWQIFNCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNTLSLPLGILLVFVFNEVDYLSRTPLLRMPIFWMVMTFSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSITGILLFKVPTSLENSASILFGLLAGVFFARAKMRERSQ 402
BLAST of XM_017387870.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZL65 ((Putative GDP-mannose transporter GONST1 isoform X1 {ECO:0000313|EMBL:MPA44725.1}))
HSP 1 Score: 601.668 bits (1550), Expect = 0.000e+0
Identity = 292/337 (86.65%), Postives = 318/337 (94.36%), Query Frame = 0
Match: A0A5B6ZL65 ((Putative GDP-mannose transporter GONST1 isoform X1 {ECO:0000313|EMBL:MPA44725.1}))
HSP 1 Score: 601.668 bits (1550), Expect = 0.000e+0
Identity = 292/337 (86.65%), Postives = 318/337 (94.36%), Query Frame = 0
Query: 1 MKTLGSEEFDVETGEFDNEREKLIRSSRVVQINNQALLSGLAYCLSSCSMILVNKYVLSSYDFSAGISLMLYQNFVSVLIVSMLSTLGVISTEPLTWRLIKVWLPVNVIFVGMLVTSMFSLRYINVAMVTVLKNVTNVITAVGEMYLFSKHHDNRVWVALFLMIISAISGGFTDLSFHAIGYTWQIINCFLTASYSLTLRRVMDTAKVVTKSGNLNEFSMVLLNNTLSLPLGLLLIFVFNEVDYLATTPLLRLPTFWLVITLSGFLGLAISFTSMWFLHQTSATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASILFGLVAGVFFARAKVRERSQ 337
MKTL ++E D+E G+ + +REK +RSSRVV+I NQALLSGLAYC+SSCSMILVNKYVLSSYDF+AGISLM+YQNFVSV+IVSMLS GVISTEPLTWRLIKVWLPVNVIFVGML+TSMFSL+YINVAMVTVLKNVTNV+TAVGEMYLF++ HDNRVW ALFLMIISAISGG TDLSFHAIGYTWQI NCFLTASYSLTLRRVMDTAK VTKSGNLNEFSMVLLNNTLSLPLG+LL+FVFNEVDYL+ TPLLR+P FW+V+T SGFLGLAISFTSMWFLHQT ATTYSLVGSLNKIPLS+ GILLFKVPTSLENSASILFGL+AGVFFARAK+RERSQ
Sbjct: 1 MKTLSNDEIDLEGGKLEKDREKTVRSSRVVKIRNQALLSGLAYCISSCSMILVNKYVLSSYDFNAGISLMVYQNFVSVVIVSMLSFFGVISTEPLTWRLIKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVMTAVGEMYLFNRRHDNRVWAALFLMIISAISGGITDLSFHAIGYTWQIFNCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNTLSLPLGILLVFVFNEVDYLSRTPLLRMPIFWMVMTFSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSITGILLFKVPTSLENSASILFGLLAGVFFARAKMRERSQ 337
BLAST of XM_017387870.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6I0E3 (TPT domain-containing protein {ECO:0000259|Pfam:PF03151})
HSP 1 Score: 597.43 bits (1539), Expect = 0.000e+0
Identity = 290/338 (85.80%), Postives = 321/338 (94.97%), Query Frame = 0
Match: F6I0E3 (TPT domain-containing protein {ECO:0000259|Pfam:PF03151})
HSP 1 Score: 597.43 bits (1539), Expect = 0.000e+0
Identity = 290/338 (85.80%), Postives = 321/338 (94.97%), Query Frame = 0
Query: 1 MKTLGSEEFDVETGEFDNEREKLIRSSRVVQINNQALLSGLAYCLSSCSMILVNKYVLSSYDFSAGISLMLYQNFVSVLIVSMLSTLGVISTEPLTWRLIKVWLPVNVIFVGMLVTSMFSLRYINVAMVTVLKNVTNVITAVGEMYLFSKHHDNRVWVALFLMIISAISGGFTDLSFHAIGYTWQIINCFLTASYSLTLRRVMDTAKVVTKSGNLNEFSMVLLNNTLSLPLGLLLIFVFNEVDYLATTPLLRLPTFWLVITLSGFLGLAISFTSMWFLHQTSATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASILFGLVAGVFFARAKVRERSQS 338
MK LGSEE D+E G+ + +REK +RS+RVV+I+NQALLSG AYC+SSCSMILVNK+VLSSYDF+AGISLM+YQN VSV++V++LS G+I+TEPLTW+LIKVWLPVNVIFVGMLVTSMFSL+YINVAMVTVLKNVTNVITAVGEMYLF+KHHDNRVW ALFLMIISAISGG TDLSF+ IGYTWQIINCFLTASYSLTLRRVMDTAK VTKSGNLNEFSMVLLNNTLSLPLG++L+FVFNEVDYL+TTPLLRLPTFWLV+TLSGFLGLAISF+SMWFLHQT ATTYSLVGSLNKIPLSVAGI+LF VPTSLENSASI FGLVAGVFFA+AK+RERSQS
Sbjct: 1 MKPLGSEETDLEDGKLEKDREKSVRSNRVVRIHNQALLSGFAYCISSCSMILVNKFVLSSYDFNAGISLMIYQNLVSVIVVTVLSFFGLITTEPLTWKLIKVWLPVNVIFVGMLVTSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKHHDNRVWAALFLMIISAISGGITDLSFNGIGYTWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNTLSLPLGVILMFVFNEVDYLSTTPLLRLPTFWLVMTLSGFLGLAISFSSMWFLHQTGATTYSLVGSLNKIPLSVAGIVLFHVPTSLENSASIFFGLVAGVFFAKAKMRERSQS 338
BLAST of XM_017387870.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061DJ20 ((Golgi nucleotide sugar transporter 1 {ECO:0000313|EMBL:EOX92550.1}))
HSP 1 Score: 596.275 bits (1536), Expect = 0.000e+0
Identity = 288/336 (85.71%), Postives = 317/336 (94.35%), Query Frame = 0
Match: A0A061DJ20 ((Golgi nucleotide sugar transporter 1 {ECO:0000313|EMBL:EOX92550.1}))
HSP 1 Score: 596.275 bits (1536), Expect = 0.000e+0
Identity = 288/336 (85.71%), Postives = 317/336 (94.35%), Query Frame = 0
Query: 1 MKTLGSEEFDVETGEFDNEREKLIRSSRVVQINNQALLSGLAYCLSSCSMILVNKYVLSSYDFSAGISLMLYQNFVSVLIVSMLSTLGVISTEPLTWRLIKVWLPVNVIFVGMLVTSMFSLRYINVAMVTVLKNVTNVITAVGEMYLFSKHHDNRVWVALFLMIISAISGGFTDLSFHAIGYTWQIINCFLTASYSLTLRRVMDTAKVVTKSGNLNEFSMVLLNNTLSLPLGLLLIFVFNEVDYLATTPLLRLPTFWLVITLSGFLGLAISFTSMWFLHQTSATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASILFGLVAGVFFARAKVRERS 336
+K +E D+E+G+ + +R+K IRS+++V+I NQALLSGLAYC+SSCSMILVNK+VLSSYDF+AGISLMLYQNF+SV+IVS+LS+LG+ISTEPLTWRLIKVWLPVNVIFVGMLVTSMFSL+YINVAMVTVLKNVTNVITAVGEMYLF KHHD+RVW ALFLMIISA+SGG TDLSFHAIGY WQIINCFLTASYSLTLRRVMDTAK VTKSGNLNEFSMVLLNNTLSLPLG+LLIFVF EVDYL TTPLLR+P FWLV+TLSGFLGLAISFTSMWFLHQT ATTYSLVGSLNKIPLSVAGI+LFKVPTSLENSASI FGL+AGVFFARAK+RERS
Sbjct: 63 VKVHEKDEMDLESGKLEKDRDKTIRSNKIVKIQNQALLSGLAYCISSCSMILVNKFVLSSYDFNAGISLMLYQNFISVVIVSILSSLGLISTEPLTWRLIKVWLPVNVIFVGMLVTSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFKKHHDSRVWTALFLMIISAVSGGITDLSFHAIGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNTLSLPLGILLIFVFREVDYLCTTPLLRMPDFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGIVLFKVPTSLENSASIFFGLLAGVFFARAKMRERS 398
BLAST of XM_017387870.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7PF52 (TPT domain-containing protein {ECO:0000259|Pfam:PF03151})
HSP 1 Score: 594.734 bits (1532), Expect = 0.000e+0
Identity = 291/338 (86.09%), Postives = 316/338 (93.49%), Query Frame = 0
Match: A0A6S7PF52 (TPT domain-containing protein {ECO:0000259|Pfam:PF03151})
HSP 1 Score: 594.734 bits (1532), Expect = 0.000e+0
Identity = 291/338 (86.09%), Postives = 316/338 (93.49%), Query Frame = 0
Query: 1 MKTLGSEEFDVETGEFDNEREKLIRSSRVVQINNQALLSGLAYCLSSCSMILVNKYVLSSYDFSAGISLMLYQNFVSVLIVSMLSTLGVISTEPLTWRLIKVWLPVNVIFVGMLVTSMFSLRYINVAMVTVLKNVTNVITAVGEMYLFSKHHDNRVWVALFLMIISAISGGFTDLSFHAIGYTWQIINCFLTASYSLTLRRVMDTAKVVTKSGNLNEFSMVLLNNTLSLPLGLLLIFVFNEVDYLATTPLLRLPTFWLVITLSGFLGLAISFTSMWFLHQTSATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASILFGLVAGVFFARAKVRERSQS 338
MK +G +E DVE G+FD E+E+ +SSR+ ++NNQALLSG AYCLSSCSMILVNKYVLSSYDF+AGISLMLYQNFVSVLIVS LS LGVISTEPLTWRLIK+WLPVN IFVGMLVTSMFSLRYINVAMVTVLKN TNVITAVGEMYLF+KHHDNRVW ALFLMIISAISGG TDL+F+A+GYTWQIINCFLTASYSLTLRRVMDTAK VTKSG LNEFSMVLLNNTLSLPLGL+LIFVFNEVDYL TTPLLR+PTFW+V+T SGFLGLAISFTSMWFLHQT ATTYSLVGSLNKIPLSVAGI+LF VPTS+ENSASILFGLVAGV FARAK+++R+QS
Sbjct: 1 MKNVGDDEADVENGKFDKEKERSQKSSRI-KVNNQALLSGFAYCLSSCSMILVNKYVLSSYDFNAGISLMLYQNFVSVLIVSSLSILGVISTEPLTWRLIKIWLPVNFIFVGMLVTSMFSLRYINVAMVTVLKNFTNVITAVGEMYLFNKHHDNRVWAALFLMIISAISGGITDLAFNAVGYTWQIINCFLTASYSLTLRRVMDTAKQVTKSGQLNEFSMVLLNNTLSLPLGLVLIFVFNEVDYLYTTPLLRMPTFWVVMTFSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGIVLFHVPTSVENSASILFGLVAGVLFARAKIKDRTQS 337
BLAST of XM_017387870.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2RC79 (TPT domain-containing protein {ECO:0000259|Pfam:PF03151})
HSP 1 Score: 593.964 bits (1530), Expect = 0.000e+0
Identity = 295/338 (87.28%), Postives = 314/338 (92.90%), Query Frame = 0
Match: A0A7N2RC79 (TPT domain-containing protein {ECO:0000259|Pfam:PF03151})
HSP 1 Score: 593.964 bits (1530), Expect = 0.000e+0
Identity = 295/338 (87.28%), Postives = 314/338 (92.90%), Query Frame = 0
Query: 1 MKTLGSEEFDVETGEFDNEREKLIRSSRVVQINNQALLSGLAYCLSSCSMILVNKYVLSSYDFSAGISLMLYQNFVSVLIVSMLSTLGVISTEPLTWRLIKVWLPVNVIFVGMLVTSMFSLRYINVAMVTVLKNVTNVITAVGEMYLFSKHHDNRVWVALFLMIISAISGGFTDLSFHAIGYTWQIINCFLTASYSLTLRRVMDTAKVVTKSGNLNEFSMVLLNNTLSLPLGLLLIFVFNEVDYLATTPLLRLPTFWLVITLSGFLGLAISFTSMWFLHQTSATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASILFGLVAGVFFARAKVRERSQS 338
MK + E D+E G FD + EK RS+RV +I NQALLSGLAYC+SSCSMILVNK+VLSSYDF+AGI LMLYQNF+SVLIVS LS LG+ISTEPLTWRL+KVWLPVN IFVGML+TSMFSLRYINVAMVTVLKNVTNVITAVGEMYLFSKHHDNRVW ALFLMIISAISGG TDLSFHA+GYTWQ+INCFLTASYSLTLRRVMDTAK VTKSGNLNEFSMVLLNNTLSLPLG+LLIFVFNEVDYL TPLLRLPTFWLV+TLSGFLGLAISFTSMWFLHQT ATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASI FGL+AGVFFARAK+RERSQ+
Sbjct: 1 MKPFENNENDLENG-FDKDTEKTTRSTRVTKIPNQALLSGLAYCISSCSMILVNKFVLSSYDFNAGIFLMLYQNFISVLIVSTLSFLGMISTEPLTWRLVKVWLPVNFIFVGMLITSMFSLRYINVAMVTVLKNVTNVITAVGEMYLFSKHHDNRVWAALFLMIISAISGGITDLSFHAVGYTWQLINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNTLSLPLGILLIFVFNEVDYLFKTPLLRLPTFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMRERSQT 337
BLAST of XM_017387870.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6KM27 (TPT domain-containing protein {ECO:0000259|Pfam:PF03151})
HSP 1 Score: 593.964 bits (1530), Expect = 0.000e+0
Identity = 291/338 (86.09%), Postives = 316/338 (93.49%), Query Frame = 0
Match: A0A2J6KM27 (TPT domain-containing protein {ECO:0000259|Pfam:PF03151})
HSP 1 Score: 593.964 bits (1530), Expect = 0.000e+0
Identity = 291/338 (86.09%), Postives = 316/338 (93.49%), Query Frame = 0
Query: 1 MKTLGSEEFDVETGEFDNEREKLIRSSRVVQINNQALLSGLAYCLSSCSMILVNKYVLSSYDFSAGISLMLYQNFVSVLIVSMLSTLGVISTEPLTWRLIKVWLPVNVIFVGMLVTSMFSLRYINVAMVTVLKNVTNVITAVGEMYLFSKHHDNRVWVALFLMIISAISGGFTDLSFHAIGYTWQIINCFLTASYSLTLRRVMDTAKVVTKSGNLNEFSMVLLNNTLSLPLGLLLIFVFNEVDYLATTPLLRLPTFWLVITLSGFLGLAISFTSMWFLHQTSATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASILFGLVAGVFFARAKVRERSQS 338
MK +G +E DVE G+FD E+E+ +SSR+ ++NNQALLSG AYCLSSCSMILVNKYVLSSYDF+AGISLMLYQNFVSVLIVS LS LGVISTEPLTWRLIK+WLPVN IFVGMLVTSMFSLRYINVAMVTVLKN TNVITAVGEMYLF+KHHDNRVW ALFLMIISAISGG TDL+F+A+GYTWQIINCFLTASYSLTLRRVMDTAK VTKSG LNEFSMVLLNNTLSLPLGL+LIFVFNEVDYL TTPLLR+PTFW+V+T SGFLGLAISFTSMWFLHQT ATTYSLVGSLNKIPLSVAGI+LF VPTS+ENSASILFGLVAGV FARAK+++R+QS
Sbjct: 32 MKNVGDDEADVENGKFDKEKERSQKSSRI-KVNNQALLSGFAYCLSSCSMILVNKYVLSSYDFNAGISLMLYQNFVSVLIVSSLSILGVISTEPLTWRLIKIWLPVNFIFVGMLVTSMFSLRYINVAMVTVLKNFTNVITAVGEMYLFNKHHDNRVWAALFLMIISAISGGITDLAFNAVGYTWQIINCFLTASYSLTLRRVMDTAKQVTKSGQLNEFSMVLLNNTLSLPLGLVLIFVFNEVDYLYTTPLLRMPTFWVVMTFSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGIVLFHVPTSVENSASILFGLVAGVLFARAKIKDRTQS 368
BLAST of XM_017387870.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9G4T1 (TPT domain-containing protein {ECO:0000259|Pfam:PF03151})
HSP 1 Score: 592.038 bits (1525), Expect = 0.000e+0
Identity = 287/338 (84.91%), Postives = 318/338 (94.08%), Query Frame = 0
Match: A0A2N9G4T1 (TPT domain-containing protein {ECO:0000259|Pfam:PF03151})
HSP 1 Score: 592.038 bits (1525), Expect = 0.000e+0
Identity = 287/338 (84.91%), Postives = 318/338 (94.08%), Query Frame = 0
Query: 1 MKTLGSEEFDVETGEFDNEREKLIRSSRVVQINNQALLSGLAYCLSSCSMILVNKYVLSSYDFSAGISLMLYQNFVSVLIVSMLSTLGVISTEPLTWRLIKVWLPVNVIFVGMLVTSMFSLRYINVAMVTVLKNVTNVITAVGEMYLFSKHHDNRVWVALFLMIISAISGGFTDLSFHAIGYTWQIINCFLTASYSLTLRRVMDTAKVVTKSGNLNEFSMVLLNNTLSLPLGLLLIFVFNEVDYLATTPLLRLPTFWLVITLSGFLGLAISFTSMWFLHQTSATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASILFGLVAGVFFARAKVRERSQS 338
MK L + E D+E G+ D +REK RS+RV++I+NQALLSGLAYC+SSCSMILVNK+VLSSY F+AGISLMLYQN +SV+IVS LS LGVI+TEPLTWRL+KVWLPVNVIFVGML+TSMFSL+YINVAMVTVLKNVTNVITA+GEMYLFSKHHDNRVW ALFLMIISAISGG TD+SF+A+GYTWQ+INCFLTA+YSLTLRRVMDTAK VTKSGNLNEFSMVLLNNTLSLPLG+LLIFVFNEVDYL+ TPLLRLPTFWLV+TLSGFLGLAISFTSMWFLHQT ATTYSLVGSLNKIPLS+ GILLFKVPTSLEN+ASI FGL+AGVFFARAK+RERSQ+
Sbjct: 13 MKPLENNENDLEDGKLDKDREKTTRSNRVLKIHNQALLSGLAYCISSCSMILVNKFVLSSYGFNAGISLMLYQNLISVIIVSTLSFLGVITTEPLTWRLVKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITALGEMYLFSKHHDNRVWAALFLMIISAISGGITDISFNAVGYTWQLINCFLTAAYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNTLSLPLGILLIFVFNEVDYLSRTPLLRLPTFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSITGILLFKVPTSLENAASIFFGLLAGVFFARAKMRERSQT 350
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6ZJR7 | E-Value: 0.000e+0, PID: 87.54 | TPT domain-containing protein {ECO:0000259|Pfam:PF... [more] |
| A0A5B6ZKK1 | E-Value: 0.000e+0, PID: 87.54 | (Putative GDP-mannose transporter GONST1 isoform X... [more] |
| A0A5B6ZM14 | E-Value: 0.000e+0, PID: 86.65 | TPT domain-containing protein {ECO:0000259|Pfam:PF... [more] |
| A0A5B6ZL65 | E-Value: 0.000e+0, PID: 86.65 | (Putative GDP-mannose transporter GONST1 isoform X... [more] |
| F6I0E3 | E-Value: 0.000e+0, PID: 85.80 | TPT domain-containing protein {ECO:0000259|Pfam:PF... [more] |
| A0A061DJ20 | E-Value: 0.000e+0, PID: 85.71 | (Golgi nucleotide sugar transporter 1 {ECO:0000313... [more] |
| A0A6S7PF52 | E-Value: 0.000e+0, PID: 86.09 | TPT domain-containing protein {ECO:0000259|Pfam:PF... [more] |
| A0A7N2RC79 | E-Value: 0.000e+0, PID: 87.28 | TPT domain-containing protein {ECO:0000259|Pfam:PF... [more] |
| A0A2J6KM27 | E-Value: 0.000e+0, PID: 86.09 | TPT domain-containing protein {ECO:0000259|Pfam:PF... [more] |
| A0A2N9G4T1 | E-Value: 0.000e+0, PID: 84.91 | TPT domain-containing protein {ECO:0000259|Pfam:PF... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |