Resource Type:
Polypeptide
Name:
XM_017383079.1
Identifier:
XM_017383079.1-protein
Sequence:
MSSTSRAPNQPPEQILVKPSFGDYYRFSSVGHLTPEPDVLVVKSPPLKRS
NEGADFEGGFGGRSSNSSFPPQTPVSGKSVKARKVPRMAKSNQTGSETPA
ANVGSPLGNNFTPAGPCRYDSSLGLLTKKFVNLLKNAEDGIIDLNNAADT
LEVQKRRIYDITNVLEGIGLIEKTVKNRIQWKGLDSARPGDVDESTGTLQ
EDIETFSMEEIRLDEKIREMQERLRDLSEDENNQRWLFVTEEDIKSLPCF
QNETLIAIKAPHGSTLEVPDPDEAVDYPQRRYRVVLRSTMGPIDVYLVSQ
FEEKFEEINGVEAPASIPPELPVTECQATVVVPEESRENATDMQGQETRT
ICPNENESHDIVNGIMKIVPDVDNDADYWLSTDAEVSITDMWRIESGVEW
NELEPLHDDFLMASVSTPPISRPDELPSPPNTTGR
Sequence Length:
435
Sequence Checksum:
892fb2d0a2c7dc322e81d9de24caf682
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017383079.1, derives from mRNA, XM_017383079.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017383079.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017383079.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834HJ78 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7154307.1}))
HSP 1 Score: 569.696 bits (1467), Expect = 0.000e+0
Identity = 291/459 (63.40%), Postives = 355/459 (77.34%), Query Frame = 0
Match: A0A834HJ78 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7154307.1}))
HSP 1 Score: 569.696 bits (1467), Expect = 0.000e+0
Identity = 291/459 (63.40%), Postives = 355/459 (77.34%), Query Frame = 0
Query: 3 STSRAPNQPPEQIL--------------VKPSFGDYYRFSSV---GHLTPEPDVLVVKSPPLKRSNEGADFEGGFGGRSSNSSF------PPQTPVSGKSVKARKVPRMAKSNQTGSETPAANVGSPLGNNFTPAGPCRYDSSLGLLTKKFVNLLKNAEDGIIDLNNAADTLEVQKRRIYDITNVLEGIGLIEKTVKNRIQWKGLDSARPGDVDESTGTLQEDIETFSMEEIRLDEKIREMQERLRDLSEDENNQRWLFVTEEDIKSLPCFQNETLIAIKAPHGSTLEVPDPDEAVDYPQRRYRVVLRSTMGPIDVYLVSQFEEKFEEINGVEAPASIPPELPVTECQATVVVPEESRENATDMQGQETRTICPNENESHDIVNGIMKIVPDVDNDADYWLSTD-AEVSITDMWRIESGVEWNELEPLHDDFLMASVST----PPISRPDELPSPPNTT 433
STS+AP+QP +QI+ +KP FGDY+RFS+ H EP+ +VVKSPPLKR E A+FE R+ ++ + P QTPVS K KA+KVPR+AK N+TGS+TP+++VGSP GNN TP GPCRYDSSLGLLTKKF+NL+K+AEDGI+DLN AADTLEVQKRRIYDITNVLEGIGLIEK +KNRIQWKG+D +RPG+V+ES T+QE++E S+EE RLD +IREMQERLR+LSE+E+NQR LFVTE+DIK+LPCFQN+TLIAIKAPHG+TLEVPDPDEAVDYPQRRYRVVLRSTMGP+DVYLVSQFEE+FEEIN VEAP SIPP + E VV EE+R++ +M+GQE + + S D V+GIMKIVP+V++DADYWL +D A++SITDMW E VEWN+L LHDD+ MAS++T P S E+PS N T
Sbjct: 2 STSQAPSQPTDQIIRQTPPLKNQLPFTALKPPFGDYHRFSAAPAFDHRQKEPEAIVVKSPPLKRKGEIAEFEAESSERNHSTGYVEAVSSPFQTPVSRKGGKAQKVPRIAKGNRTGSQTPSSHVGSPSGNNLTPVGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGIDVSRPGEVEESVSTIQEEVENLSIEECRLDGQIREMQERLRELSENEHNQRLLFVTEDDIKNLPCFQNQTLIAIKAPHGTTLEVPDPDEAVDYPQRRYRVVLRSTMGPVDVYLVSQFEERFEEINAVEAPPSIPPASGLIENPVAPVVTEENRQSNIEMEGQEPHGTFSDTHPSPDFVSGIMKIVPEVESDADYWLLSDAADISITDMWSTEPVVEWNDLGSLHDDYAMASINTTRPQTPPSSTTEVPSAANNT 460
BLAST of XM_017383079.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7FS61 (E2F_TDP domain-containing protein {ECO:0000259|SMART:SM01372})
HSP 1 Score: 568.926 bits (1465), Expect = 0.000e+0
Identity = 297/461 (64.43%), Postives = 344/461 (74.62%), Query Frame = 0
Match: A0A7J7FS61 (E2F_TDP domain-containing protein {ECO:0000259|SMART:SM01372})
HSP 1 Score: 568.926 bits (1465), Expect = 0.000e+0
Identity = 297/461 (64.43%), Postives = 344/461 (74.62%), Query Frame = 0
Query: 3 STSRAPNQPPEQIL----------------VKPSFGDYYRFSS--VGHLTPEPDVLVVKSPPLKRSNEGADFEGGFGGRSSNSSF------PPQTPVSGKSVKARKVPRMAKSNQTGSETPAANVGSPLGNNFTPAGPCRYDSSLGLLTKKFVNLLKNAEDGIIDLNNAADTLEVQKRRIYDITNVLEGIGLIEKTVKNRIQWKGLDSARPGDVDESTGTLQEDIETFSMEEIRLDEKIREMQERLRDLSEDENNQRWLFVTEEDIKSLPCFQNETLIAIKAPHGSTLEVPDPDEAVDYPQRRYRVVLRSTMGPIDVYLVSQFEEKFEEINGVEAPASIPPELPVTECQATVVVPEESRENATDMQGQETRTICPNENESHDIVNGIMKIVPDVDNDADYWLSTDAEVSITDMWRIESGVEWNELEPLHDDFLMASVSTP----PISRPDELPSPPNTTGR 435
STSRA N P E I+ +KP GDYYRFS V + EPD +V KSPPLKR +E AD E R+ ++ + P QTPVSGK KA++ PR+AK N+ GS+TP ANVGSP GNN TP GPCRYDSSLGLLTKKF+NL+K+AE+GI+DLN AADTLEVQKRRIYDITNVLEGIGLIEK +KNRIQWKGLD +RPG++DE+ T+Q ++E S+EE ++DE+IREMQERLR+LSE+E NQ+WLFVTE+DIK LP FQNETLIAIKAPHG+TLEVPDPDEAVDYPQRRYR+VLRSTMGPIDVYLVSQFEEKFEEING EA SIP A +V EESR N T+MQGQE +C N N S D V+GIMKIVP++D+DADYWL D +VSITDMW E GVEWNE L DD+ MA VSTP P S E+PS NT GR
Sbjct: 2 STSRASNMPTEPIMQQSQQQPLKRQLPFTPMKPPLGDYYRFSPSVVDNRQKEPDAIVFKSPPLKRKSETADHEAESSDRNPSTGYAEPISSPLQTPVSGKRGKAQRAPRIAKCNRAGSQTPVANVGSPSGNNLTPVGPCRYDSSLGLLTKKFINLIKHAENGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEIDENVATIQAEVENLSIEEHKVDEQIREMQERLRELSENERNQKWLFVTEDDIKGLPFFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGDEASPSIPLTSGFDGNPAAPMVTEESR-NDTEMQGQEDHRLCSNINASQDFVSGIMKIVPEIDSDADYWLLPDGDVSITDMW-TEPGVEWNEFGTLQDDYAMADVSTPHPQTPPSSTTEVPSSANTAGR 460
BLAST of XM_017383079.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6P735 ((Transcription factor E2FB like {ECO:0000313|EMBL:PSR86456.1}))
HSP 1 Score: 564.688 bits (1454), Expect = 0.000e+0
Identity = 292/450 (64.89%), Postives = 342/450 (76.00%), Query Frame = 0
Match: A0A2R6P735 ((Transcription factor E2FB like {ECO:0000313|EMBL:PSR86456.1}))
HSP 1 Score: 564.688 bits (1454), Expect = 0.000e+0
Identity = 292/450 (64.89%), Postives = 342/450 (76.00%), Query Frame = 0
Query: 3 STSRAPNQ--PPEQ-----ILVKPSFGDYYRFSS--VGHLTPEPDVLVVKSPPLKRSNEGADFEGGFG------GRSSNSSFPPQTPVSGKSVKARKVPRMAKSNQTGSETPAANVGSPLGNNFTPAGPCRYDSSLGLLTKKFVNLLKNAEDGIIDLNNAADTLEVQKRRIYDITNVLEGIGLIEKTVKNRIQWKGLDSARPGDVDESTGTLQEDIETFSMEEIRLDEKIREMQERLRDLSEDENNQRWLFVTEEDIKSLPCFQNETLIAIKAPHGSTLEVPDPDEAVDYPQRRYRVVLRSTMGPIDVYLVSQFEEKFEEINGVEAPASIPPELPVTECQATVVVPEESRENATDMQGQETRTICPNENESHDIVNGIMKIVPDVDNDADYWLSTDAEVSITDMWRIESGVEWNELEPLHDDFLMASVSTP----PISRPDELPSPPNTT 433
S S APNQ PP + KP FG Y+ FS+ V H +P+ +VVKSPPLKR +E +FE G + P QTPVSGK K +K PR AK N++GS+TPAA VGSP GNN TP GPCRYDSSLGLLTKKF+NL+K+AEDGI+DLN AADTLEVQKRRIYDITNVLEGIGLIEK +KNRIQWKGLD +RPG+V E+ T+Q ++E S+EE RLD+KIREMQE+LR+LSE+ENNQ+WLFVTE+DIKSLPCFQNETLIAIKAPHG+TLEVPDPDEAVDYPQRRYR+VLRSTMGP+DVYLVSQFEEKFEE N VEAP IP L E A + EE+ N +MQGQE + +C + N S D V+GIMKIVP+VD+DADYWL +DA+VSITDMWR+E GVEW LHDD+ +A+VSTP P S E+ S NTT
Sbjct: 2 SASEAPNQQQPPLKRQLPFAATKPPFGGYHHFSASVVDHRQNQPEGIVVKSPPLKRKSEKTEFEAESSECNPSTGYAETFGSPFQTPVSGKGGKTQKAPRSAKCNRSGSQTPAAVVGSPSGNNLTPVGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEVHENGSTIQAEVENLSIEEHRLDDKIREMQEKLRELSENENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPVDVYLVSQFEEKFEESNAVEAPPGIPSTLGFNENPAVPMAIEETTINEIEMQGQEDQRLCTDTNASQDFVSGIMKIVPEVDSDADYWLLSDADVSITDMWRMEPGVEW-----LHDDYAIANVSTPRPQTPPSSTTEVLSASNTT 446
BLAST of XM_017383079.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TXJ9 ((transcription factor E2FB-like {ECO:0000313|RefSeq:XP_027083093.1}))
HSP 1 Score: 564.303 bits (1453), Expect = 0.000e+0
Identity = 286/435 (65.75%), Postives = 336/435 (77.24%), Query Frame = 0
Match: A0A6P6TXJ9 ((transcription factor E2FB-like {ECO:0000313|RefSeq:XP_027083093.1}))
HSP 1 Score: 564.303 bits (1453), Expect = 0.000e+0
Identity = 286/435 (65.75%), Postives = 336/435 (77.24%), Query Frame = 0
Query: 17 VKPSFGDYYRFSSVGHLTP-EPDVLVVKS-----PPLKRSNEGADFE-------GGFGGRSSNSSFPPQTPVSGKSVKARKVPRMAKSNQTGSETPAANVGSPLGNNFTPAGPCRYDSSLGLLTKKFVNLLKNAEDGIIDLNNAADTLEVQKRRIYDITNVLEGIGLIEKTVKNRIQWKGLDSARPGDVDESTGTLQEDIETFSMEEIRLDEKIREMQERLRDLSEDENNQRWLFVTEEDIKSLPCFQNETLIAIKAPHGSTLEVPDPDEAVDYPQRRYRVVLRSTMGPIDVYLVSQFEEKFEEINGVEAPASIPPELPVTECQATVVVPEESRENATDMQGQETRTICPNENESHDIVNGIMKIVPDVDNDADYWLSTDAEVSITDMWRIESGVEWNELEPLHDDFLMASVSTPPISRP----DELPSPPNTTG 434
+KP FGDY+ FS+ H P EP+ ++VKS PPLKR N+ D E G G + ++ +TPVSGK KA+K PRM K++++GS+TPA NVGSP GN+ TP GPCRYDSSLGLLTKKF+NL+K+AEDGI+DLN AADTLEVQKRRIYDITNVLEGIGLIEK +KNRIQWKGLD +RPG+VDES +LQ DIE +MEE RLD++IREMQERLRDLSE ENNQ+WLFVTEEDIKSLPCFQNETLIAIKAPHG+TLEVPDPDEAVDYPQRRYR+VLRSTMGPIDVYLVSQFEEKFEEIN VEAP IP V E AT V +ES + ++ QE +C + S D V+GIMKIVPDVD+DADYWL +DA+VSITDMWR ESGV+W +L + +++ M SVSTP P E+PS N +G
Sbjct: 22 MKPPFGDYHHFSTDPHRLPLEPEAVIVKSSPPAPPPLKRKNDVVDVEVESNDQNHGLG-YTDAANVSAKTPVSGKVGKAQKAPRMTKASRSGSQTPATNVGSPSGNHLTPVGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEVDESVASLQADIENLTMEEHRLDDQIREMQERLRDLSEAENNQKWLFVTEEDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINAVEAPPDIPSTSGVNENLATTSVTKESGGDNIQIEEQEDNRMCSDIGTSQDFVSGIMKIVPDVDSDADYWLLSDADVSITDMWRTESGVDWGDLSAIQENYAMPSVSTPRAQTPPPHTTEVPSATNVSG 455
BLAST of XM_017383079.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZAJ9 (E2F_TDP domain-containing protein {ECO:0000259|SMART:SM01372})
HSP 1 Score: 563.533 bits (1451), Expect = 0.000e+0
Identity = 284/436 (65.14%), Postives = 339/436 (77.75%), Query Frame = 0
Match: A0A5J4ZAJ9 (E2F_TDP domain-containing protein {ECO:0000259|SMART:SM01372})
HSP 1 Score: 563.533 bits (1451), Expect = 0.000e+0
Identity = 284/436 (65.14%), Postives = 339/436 (77.75%), Query Frame = 0
Query: 17 VKPSF----GDYYRF--SSVGHLTPEPDVLVVKSPPLKRSNEGADFEGGFGGRSSNSSF------PPQTPVSGKSVKARKVPRMAKSNQTGSETPAANVGSPLGNNFTPAGPCRYDSSLGLLTKKFVNLLKNAEDGIIDLNNAADTLEVQKRRIYDITNVLEGIGLIEKTVKNRIQWKGLDSARPGDVDESTGTLQEDIETFSMEEIRLDEKIREMQERLRDLSEDENNQRWLFVTEEDIKSLPCFQ-NETLIAIKAPHGSTLEVPDPDEAVDYPQRRYRVVLRSTMGPIDVYLVSQFEEKFEEINGVEAPASIPPELPVTECQATVVVPEESRENATDMQGQETRTICPNENESHDIVNGIMKIVPDVDNDADYWLSTDAEVSITDMWRIESGVEWNELEPLHDDFLMASVSTP----PISRPDELPSPPNTTGR 435
+KP F G Y+RF S L E + +VVKS LK +E A++E R+ + P QTPVS K KA+KVPR K N++GS+TPA+NVGSP GNN TP GPCRYDSSLGLLTKKF+NL+K+AEDGI+DLN A DTLEVQKRRIYDITNVLEGIGLIEK +KNRIQWKG+D +R G+VDE+ +LQ ++E S+EE RLDE+IR+MQERLR LSEDENNQ+WLFVTEEDIKSLP FQ +ETLIAIKAPHG+TL+VPDPDEAVDYPQRRYR+VLRSTMGPIDVYLVSQFEEKFEEINGVE P SIP +TE A + E+SR N +MQGQE +C + N S D ++GIMKIVP+VD+DADYWL +DA+VSITDMWR ESGVEWNEL+ LHDD++M ++STP P+S E+P+ NT G+
Sbjct: 21 MKPPFAASPGGYHRFLSSEADRLPLEAEAIVVKSRQLKWKSETANYEAVSSERNRSPGCTELVNSPLQTPVSAKVGKAQKVPRAGKCNRSGSQTPASNVGSPSGNNLTPVGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAVDTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGIDVSRHGEVDENVASLQAEVENLSIEERRLDEQIRDMQERLRGLSEDENNQKWLFVTEEDIKSLPSFQEDETLIAIKAPHGTTLKVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVPQSIPSMSRLTESPAAAMSTEQSRGNEIEMQGQEAHRMCIDPNASQDFLSGIMKIVPEVDSDADYWLLSDADVSITDMWRTESGVEWNELDTLHDDYVMVNISTPRPQTPLSDAAEVPAAANTMGK 456
BLAST of XM_017383079.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GAI6 (E2F_TDP domain-containing protein {ECO:0000259|SMART:SM01372})
HSP 1 Score: 562.762 bits (1449), Expect = 0.000e+0
Identity = 296/464 (63.79%), Postives = 351/464 (75.65%), Query Frame = 0
Match: A0A7J7GAI6 (E2F_TDP domain-containing protein {ECO:0000259|SMART:SM01372})
HSP 1 Score: 562.762 bits (1449), Expect = 0.000e+0
Identity = 296/464 (63.79%), Postives = 351/464 (75.65%), Query Frame = 0
Query: 3 STSRAPNQPPEQIL-----------------VKPSFGDYYRFSS--VGHLTPEPDVLVVKSPPLKRSNEGADFEGGFGGRSSNSSF------PPQTPVSGKSVKARKVPRMAKSNQTGSETPAANVGSPLGNNFTPAGPCRYDSSLGLLTKKFVNLLKNAEDGIIDLNNAADTLEVQKRRIYDITNVLEGIGLIEKTVKNRIQWKGLDSARPGDVDESTGTLQEDIETFSMEEIRLDEKIREMQERLRDLSEDENNQRWLFVTEEDIKSLPCFQNETLIAIKAPHGSTLEVPDPDEAVDYPQRRYRVVLRSTMGPIDVYLVSQFEEKFEEI-NGVEAPASIPPELPVTECQATVVVPEESRENATDMQGQ-ETRTICPNENESHDIVNGIMKIVPDVDNDADYWLSTDAEVSITDMWRIESGVEWNELEPLHDDFLMASVSTP----PISRPDELPSPPNTTGR 435
STS+A N P EQI+ +KP FGDY+RFSS + EP+ +VVKSPPLKR +E AD + ++ + P QTPVSGK KA+K PRMAKSN++GS+TP +NVGSP GNN TP GPCRYDSSLGLLTKKF+NL+K+AEDGI+DLN AA+TLEVQKRRIYDITNVLEGIGLIEK +KNRIQWKG+D +RPG+ DE+ T+Q ++E S+EE RLDE+IREMQERLR+LSE+ENNQ+WLFVTE+DIK LPCFQNETLIAIKAPHG+TLEVPDPDEAVDYPQRRYRVVLRSTMGP+DVYLVSQFEEKFEEI NGV A SIP + E + ++ EES +N +MQGQ E C + N + D +GIMKIVP+V++DADYWL DA+VSITD+W ES VEWNEL L+DDF MA+V TP P S E+PS NTTGR
Sbjct: 2 STSQA-NHPTEQIVPQQQHQLPLKRQLPFSSMKPPFGDYHRFSSPALDLRLKEPEAIVVKSPPLKRKSETADLVAESSDWNPSTGYVEAVGSPLQTPVSGKGGKAQKAPRMAKSNRSGSQTPVSNVGSPSGNNLTPIGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGVDVSRPGETDENAVTIQAEVENLSLEERRLDEQIREMQERLRELSENENNQKWLFVTEDDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRVVLRSTMGPVDVYLVSQFEEKFEEINNGVGASPSIPSTSGLNENTSAPLLTEESNQNEIEMQGQEEAHRTCSDINATPDFASGIMKIVPEVESDADYWLLPDADVSITDLWGTESVVEWNELGTLNDDFEMANVITPRPQTPPSSTTEVPSAANTTGR 464
BLAST of XM_017383079.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZX95 ((Putative transcription factor E2FB {ECO:0000313|EMBL:MPA49087.1}) (Fragment))
HSP 1 Score: 562.377 bits (1448), Expect = 0.000e+0
Identity = 290/437 (66.36%), Postives = 338/437 (77.35%), Query Frame = 0
Match: A0A5B6ZX95 ((Putative transcription factor E2FB {ECO:0000313|EMBL:MPA49087.1}) (Fragment))
HSP 1 Score: 562.377 bits (1448), Expect = 0.000e+0
Identity = 290/437 (66.36%), Postives = 338/437 (77.35%), Query Frame = 0
Query: 17 VKPSF----GDYYRFS-SVGHLTP-EPDVLVVKSPPLKRSNEGADFEGGFGGRSS--------NSSFPPQTPVSGKSVKARKVPRMAKSNQTGSETPAANVGSPLGNNFTPAGPCRYDSSLGLLTKKFVNLLKNAEDGIIDLNNAADTLEVQKRRIYDITNVLEGIGLIEKTVKNRIQWKGLDSARPGDVDESTGTLQEDIETFSMEEIRLDEKIREMQERLRDLSEDENNQRWLFVTEEDIKSLPCFQNETLIAIKAPHGSTLEVPDPDEAVDYPQRRYRVVLRSTMGPIDVYLVSQFEEKFEEINGVEAPASIPPELPVTECQATVVVPEESRENATDMQGQETRTICPNENESHDIVNGIMKIVPDVDNDADYWLSTDAEVSITDMWRIESGVEWNELEPLHDDFLMASVSTP----PISRPDELPSPPNTTGR 435
+KP F GDY+RFS SV P E + +VVKSP LK +E AD+E R+ NSS QTPVS K KA+KVPR K N++GS+TPA+N+GSP GNN TP GPCRYDSSLGLLTKKF+NL+K N AADTLEVQKRRIYDITNVLEGIGLIEK +KNRIQWKGLD++RPG+VDE+ +LQ ++E+ S+EE RLDE+IR+M+ERLRDLSEDENNQ+WLFVTEEDIKS+PC Q+ETLIAIKAPHG+TLEVPDPDEAVDYPQRRYR+VLRSTMGPIDVYLVSQFEEKFEEINGVE P SIP E A +V EESR + +MQGQE +C + N S D V+GIMKIVP+VD+DADYWL +DA+VSITDMWR ESGVEWNEL+ LHDD+ MA+VSTP P S E+PS NT G+
Sbjct: 41 MKPPFAASPGDYHRFSPSVADRRPQEAEAIVVKSPQLKWKSETADYEALSSERNRSPGCTEVVNSSL--QTPVSAKGGKAQKVPRAGKCNRSGSQTPASNIGSPSGNNLTPVGPCRYDSSLGLLTKKFINLIKX--------NKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDASRPGEVDENVASLQAEVESLSIEEHRLDEQIRDMRERLRDLSEDENNQKWLFVTEEDIKSVPCLQDETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVPPSIPSTSGFNESPAAAMVTEESRGSEIEMQGQEANRMCIDPNASQDFVSGIMKIVPEVDSDADYWLLSDADVSITDMWRTESGVEWNELDTLHDDYAMANVSTPRPQTPPSGTTEVPSAANTRGK 467
BLAST of XM_017383079.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068UEG0 (E2F_TDP domain-containing protein {ECO:0000259|SMART:SM01372})
HSP 1 Score: 561.222 bits (1445), Expect = 0.000e+0
Identity = 287/435 (65.98%), Postives = 337/435 (77.47%), Query Frame = 0
Match: A0A068UEG0 (E2F_TDP domain-containing protein {ECO:0000259|SMART:SM01372})
HSP 1 Score: 561.222 bits (1445), Expect = 0.000e+0
Identity = 287/435 (65.98%), Postives = 337/435 (77.47%), Query Frame = 0
Query: 17 VKPSFGDYYRFSSVGHLTP-EPDVLVVKSPP-----LKRSNEGADFE-------GGFGGRSSNSSFPPQTPVSGKSVKARKVPRMAKSNQTGSETPAANVGSPLGNNFTPAGPCRYDSSLGLLTKKFVNLLKNAEDGIIDLNNAADTLEVQKRRIYDITNVLEGIGLIEKTVKNRIQWKGLDSARPGDVDESTGTLQEDIETFSMEEIRLDEKIREMQERLRDLSEDENNQRWLFVTEEDIKSLPCFQNETLIAIKAPHGSTLEVPDPDEAVDYPQRRYRVVLRSTMGPIDVYLVSQFEEKFEEINGVEAPASIPPELPVTECQATVVVPEESRENATDMQGQETRTICPNENESHDIVNGIMKIVPDVDNDADYWLSTDAEVSITDMWRIESGVEWNELEPLHDDFLMASVSTPPISRP----DELPSPPNTTG 434
+KP FGDY+ FS+ H P EP+ ++VKSPP LKR N+ D E GFG + ++ +TPVSGK KA+K PRM K++++GS+TPA NVGSP GN+ TP GPCRYDSSLGLLTKKF+NL+K+AEDGI+DLN AADTLEVQKRRIYDITNVLEGIGLIEK +KNRIQWKGLD +RPG+VDES +LQ DIE +MEE RLD++IREMQERLRDLSE ENNQ+WLFVTEEDIKSLPCFQNETLIAIKAPHG+TLEVPDPDEAVDYPQRRYR+VLRSTMGPIDVYLVSQFEEKFEEIN VEAP IP V E AT V +ES + ++ QE +C + S D V+GIMKIVPDVD+DADYWL +DA+VSITDMWR ESGV+W +L + +++ M SVSTP P E+PS N +G
Sbjct: 22 MKPPFGDYHHFSTDPHRPPLEPEAVIVKSPPPAPPPLKRKNDVVDVEVESNDQNHGFG-YTDAANVSAKTPVSGKVGKAQKAPRMTKASRSGSQTPATNVGSPSGNHLTPVGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEVDESVASLQADIENLTMEEHRLDDQIREMQERLRDLSEAENNQKWLFVTEEDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINAVEAPPDIPSTSGVNENLATTSVTKESGGDNIQIEEQEDNRMCSDIGTSQDFVSGIMKIVPDVDSDADYWLLSDADVSITDMWRTESGVDWGDLSAIQENYAMPSVSTPRAQTPPPHTTEVPSATNVSG 455
BLAST of XM_017383079.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C3G4 (E2F_TDP domain-containing protein {ECO:0000259|SMART:SM01372})
HSP 1 Score: 560.451 bits (1443), Expect = 0.000e+0
Identity = 277/408 (67.89%), Postives = 325/408 (79.66%), Query Frame = 0
Match: A0A5J5C3G4 (E2F_TDP domain-containing protein {ECO:0000259|SMART:SM01372})
HSP 1 Score: 560.451 bits (1443), Expect = 0.000e+0
Identity = 277/408 (67.89%), Postives = 325/408 (79.66%), Query Frame = 0
Query: 17 VKPSF----GDYYRFSS--VGHLTPEPDVLVVKSPPLKRSNEGADFEGGFGGRSSNSSFPPQTPVSGKSVKARKVPRMAKSNQTGSETPAANVGSPLGNNFTPAGPCRYDSSLGLLTKKFVNLLKNAEDGIIDLNNAADTLEVQKRRIYDITNVLEGIGLIEKTVKNRIQWKGLDSARPGDVDESTGTLQEDIETFSMEEIRLDEKIREMQERLRDLSEDENNQRWLFVTEEDIKSLPCFQNETLIAIKAPHGSTLEVPDPDEAVDYPQRRYRVVLRSTMGPIDVYLVSQFEEKFEEINGVEAPASIPPELPVTECQATVVVPEESRENATDMQGQETRTICPNENESHDIVNGIMKIVPDVDNDADYWLSTDAEVSITDMWRIESGVEWNELEPLHDDFLMASVSTP 418
+KP F GDY+RFSS + E + ++VKSP LK +E AD+E VS K KA+KVPR K N++GS+TPA+NVGSP GNN TP GPCRYDSSLGLLTKKF+NL+K+AEDGI+DLN AADTLEVQKRRIYDITNVLEGIGLIEK +KNRIQWKGLD +RPG+VD++ +LQ ++E S+EE RLDE+IR+MQERLR LSEDENNQ+WLFVTEEDIKSLPCFQ+ETLIAIKAPHG+TLEVPDPDEAVDYPQRRYR+VLRSTMGP+DVYLVSQFEEKFEEINGVE P SIP + E A ++ E+S N MQGQE +C + N S D V+GIMKIVP+VD+DADYWL +DA+VSITDMWR ESGVEWNEL+ LHDD++M +VSTP
Sbjct: 19 MKPPFAASPGDYHRFSSSVADRRSHEAEAILVKSPQLKWKSETADYEA----------------VSAKVGKAQKVPRAGKCNRSGSQTPASNVGSPSGNNLTPVGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEVDDNVASLQAEVENLSVEERRLDEQIRDMQERLRGLSEDENNQKWLFVTEEDIKSLPCFQDETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPVDVYLVSQFEEKFEEINGVEVPQSIPSISGLNESPAAAMLTEQSIGNEIGMQGQEPHKMCIDPNVSQDFVSGIMKIVPEVDSDADYWLLSDADVSITDMWRTESGVEWNELDTLHDDYVMVNVSTP 410
BLAST of XM_017383079.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4V3WPZ7 (E2F_TDP domain-containing protein {ECO:0000259|SMART:SM01372})
HSP 1 Score: 557.755 bits (1436), Expect = 0.000e+0
Identity = 297/483 (61.49%), Postives = 345/483 (71.43%), Query Frame = 0
Match: A0A4V3WPZ7 (E2F_TDP domain-containing protein {ECO:0000259|SMART:SM01372})
HSP 1 Score: 557.755 bits (1436), Expect = 0.000e+0
Identity = 297/483 (61.49%), Postives = 345/483 (71.43%), Query Frame = 0
Query: 3 STSRAPNQPPEQIL----------------VKPSFGDYYRFSS--VGHLTPEPDVLVVKSPPLKRSNEGADFEGGFGGRSSNSSF------PPQTPVSGKSVKARKVPRMAKSNQTGSETPAANVGSPLGNNFTPAGPCRYDSSLGLLTKKFVNLLKNAEDGIIDLNNAADTLEVQKRRIYDITNVLEGIGLIEKTVKNRIQWKGLDSARPGDVDESTGTLQEDIETFSMEEIRLDEKIREMQERLRDLSEDENNQRWLFVTEEDIKSLPCFQNETLIAIKAPHGSTLEVPDPDEAVDYPQRRYRVVLRSTMGPIDVYLV----------------------SQFEEKFEEINGVEAPASIPPELPVTECQATVVVPEESRENATDMQGQETRTICPNENESHDIVNGIMKIVPDVDNDADYWLSTDAEVSITDMWRIESGVEWNELEPLHDDFLMASVSTP----PISRPDELPSPPNTTGR 435
STSRA N P E I+ +KP GDYYRFS V + EPD +V KSPPLKR +E AD E R+ ++ + P QTPVSGK KA++ PR+AK N+ GS+TP ANVGSP GNN TP GPCRYDSSLGLLTKKF+NL+K+AE+GI+DLN AADTLEVQKRRIYDITNVLEGIGLIEK +KNRIQWKGLD +RPG++DE+ T+Q ++E S+EE ++DE+IREMQERLR+LSE+E NQ+WLFVTE+DIK LPCFQNETLIAIKAPHG+TLEVPDPDEAV+YPQRRYR+VLRSTMGPIDVYLV SQFEEKFEEING EA SIP A +V EESR N T+MQGQE +C N N S D V+GIMKIVP+VD+DADYWL D +VSITDMW E GVEWNE + DD+ MA VSTP P S E+PS NT GR
Sbjct: 2 STSRASNMPTEPIMQQSQQQPLKRQLPFTPMKPPLGDYYRFSPSVVDNRQKEPDAIVFKSPPLKRKSETADHEAESSDRNPSTGYAEPISSPLQTPVSGKRGKAQRAPRIAKCNRAGSQTPVANVGSPSGNNLTPVGPCRYDSSLGLLTKKFINLIKHAENGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEIDENVATIQAEVENLSIEEHKVDEQIREMQERLRELSENERNQKWLFVTEDDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVEYPQRRYRIVLRSTMGPIDVYLVRSKDERPSLADCSHCFRELNCESQFEEKFEEINGDEASPSIPLTSGFDGNPAAPMVTEESR-NDTEMQGQEDHRLCSNINASQDFVSGIMKIVPEVDSDADYWLLPDGDVSITDMW-TEPGVEWNEFGTIQDDYAMADVSTPHPQTPPSSTTEVPSSANTAGR 482
| Match Name | Stats | Description |
|---|---|---|
| A0A834HJ78 | E-Value: 0.000e+0, PID: 63.40 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7154... [more] |
| A0A7J7FS61 | E-Value: 0.000e+0, PID: 64.43 | E2F_TDP domain-containing protein {ECO:0000259|SMA... [more] |
| A0A2R6P735 | E-Value: 0.000e+0, PID: 64.89 | (Transcription factor E2FB like {ECO:0000313|EMBL:... [more] |
| A0A6P6TXJ9 | E-Value: 0.000e+0, PID: 65.75 | (transcription factor E2FB-like {ECO:0000313|RefSe... [more] |
| A0A5J4ZAJ9 | E-Value: 0.000e+0, PID: 65.14 | E2F_TDP domain-containing protein {ECO:0000259|SMA... [more] |
| A0A7J7GAI6 | E-Value: 0.000e+0, PID: 63.79 | E2F_TDP domain-containing protein {ECO:0000259|SMA... [more] |
| A0A5B6ZX95 | E-Value: 0.000e+0, PID: 66.36 | (Putative transcription factor E2FB {ECO:0000313|E... [more] |
| A0A068UEG0 | E-Value: 0.000e+0, PID: 65.98 | E2F_TDP domain-containing protein {ECO:0000259|SMA... [more] |
| A0A5J5C3G4 | E-Value: 0.000e+0, PID: 67.89 | E2F_TDP domain-containing protein {ECO:0000259|SMA... [more] |
| A0A4V3WPZ7 | E-Value: 0.000e+0, PID: 61.49 | E2F_TDP domain-containing protein {ECO:0000259|SMA... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |