Resource Type:
Polypeptide
Name:
XM_017382170.1
Identifier:
XM_017382170.1-protein
Sequence:
MGSATPSLSSLVNSPSISPINYYRMNQMFLGVHSAQLPTHIVSLSVCLSN
HNPNISNYLIYSGAPSSRVSVRCFAATGSLNLDSAVQRNLWDSSDSQRSD
RKPNTSKKSFDKDFELMLQELFDEIKSMIMMGNNNDALDLLEANYESVKQ
QIDAGDEGIEQAAILDVIALGYVAMGDLKMVEFLLNLLNKAVNELLDDEP
LLDSVLTHMGSMYTTLGKFDNSMHMYRRALGIIEAKYGRNSNLLVTPLLG
IGKVLGLIGRVTKATDIYNQAINVLETNMGAESEQLVLPLFALGNLLIKE
GKTTDAENAFLRILNIYKILYGEGDERVGMTMCSLANVKCAEGNVDDAIL
LYQNALLLLKDSKNVSSNNGRIEKVMIDLAELLHSVGRGKEGRELLEECL
LITEQHRGKEHPDTVTHLMNLATSYSRSKNFVEAERLLRTSLKIMSKTVS
PDDQSISFPMLNLAVTLYNLDQNEEAEQLALEVLLIREKSFGKDSLPVGE
ALDCLVSIQSRLGKDDKELLGHLQRVLKIQEKAFGNDSEEVIGTLKKILF
YLDKMGKKNEKFPVQKRLSMLRTKYKEMIRH
Sequence Length:
581
Sequence Checksum:
48aa7f6afad2106a889036935d4cd724
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017382170.1, derives from mRNA, XM_017382170.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017382170.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017382170.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YMU5 ((Putative nephrocystin-3 isoform X1 {ECO:0000313|EMBL:MPA33172.1}))
HSP 1 Score: 721.079 bits (1860), Expect = 0.000e+0
Identity = 369/574 (64.29%), Postives = 451/574 (78.57%), Query Frame = 0
Match: A0A5B6YMU5 ((Putative nephrocystin-3 isoform X1 {ECO:0000313|EMBL:MPA33172.1}))
HSP 1 Score: 721.079 bits (1860), Expect = 0.000e+0
Identity = 369/574 (64.29%), Postives = 451/574 (78.57%), Query Frame = 0
Query: 15 PSISPINYYRMNQMFLGVHSAQLPTHIVSLSVCLSNHNPNISNYLIYSGAPSSRVSVRCFAATGSLNLDSAVQRNLWDS-----SDSQRSDRKPNTSKKSFDK--DFELMLQELFDEIKSMIMMGNNNDALDLLEANYESVKQQIDAGDEGIEQAAILDVIALGYVAMGDLKMVEFLLNLLNKAVNELLDDEPLLDSVLTHMGSMYTTLGKFDNSMHMYRRALGIIEAKYGRNSNLLVTPLLGIGKVLGLIGRVTKATDIYNQAINVLETNMGAESEQLVLPLFALGNLLIKEGKTTDAENAFLRILNIYKILYGEGDERVGMTMCSLANVKCAEGNVDDAILLYQNALLLLKDSKNVSSNNGRIEKVMIDLAELLHSVGRGKEGRELLEECLLITEQHRGKEHPDTVTHLMNLATSYSRSKNFVEAERLLRTSLKIMSKTVSPDDQSISFPMLNLAVTLYNLDQNEEAEQLALEVLLIREKSFGKDSLPVGEALDCLVSIQSRLGKDDKELLGHLQRVLKIQEKAFGNDSEEVIGTLKKILFYLDKMGKKNEKFPVQKRLSMLRTKYKEMIRH 581
PS S N YR+ Q+ L VHS QL I+ SV L N NI Y+ + S +R FA GSL +D Q N S ++SQRS+ + S D DFE LQELFDE+K+MI GN NDA+DLL+ANYE+VK+Q+DAG GIE+AA+LD+IALGY+A D K+V LL++LN+ V+ L D PLLDS+LTHMGSMY+ LGKFD SM Y RAL I+E KYG NS +LVTPLLG+ KVLG IGR TKA ++Y++ I +LE + G ESE LV+PLF LGNLLIKEG+ TDAEN F+RILNIYK LYG +ERVG+ MCSLANVKCAEGN D+AI LY+NAL + +DSK+++ ++ IEK IDLAELLH VGRGKEGRELLEECLLITE++RGKEHP +V+HL+NLATSYSRSK+FV+AERLLRTSL+IM KT+ PDDQSI+FPML+LAVTLYNL+Q++EAE+LALEVL IREK+FGK+SLPVGEALDCLV IQ+RLGKDD +LL L+RVL+IQEK FG +SEEV+ TLKKI+FYLDKMG K+EKF +Q+RLSMLR KYK+M+R+
Sbjct: 7 PSTS-FNNYRIGQVCLNVHSDQLQKGIMCFSVHLQNRKCNIKLYMKPDTSISHNCVLRPFATAGSLEVDGERQGNQVSSGVLGPTNSQRSENLLDISSNPSDSMSDFERQLQELFDEVKTMIRKGNKNDAIDLLQANYEAVKEQMDAGARGIEEAAMLDIIALGYMAAEDFKIVGSLLDMLNEVVDSLKGDGPLLDSILTHMGSMYSVLGKFDRSMLAYGRALEILEGKYGNNSTVLVTPLLGMAKVLGSIGRATKAVELYHRVIAILELSRGTESEDLVVPLFGLGNLLIKEGRVTDAENPFIRILNIYKKLYGVDNERVGLAMCSLANVKCAEGNADEAIHLYRNALQVFEDSKSMALDDSIIEKTRIDLAELLHEVGRGKEGRELLEECLLITEKYRGKEHPSSVSHLINLATSYSRSKDFVKAERLLRTSLRIMMKTMGPDDQSITFPMLHLAVTLYNLNQDDEAEKLALEVLGIREKAFGKESLPVGEALDCLVPIQTRLGKDDTDLLEMLKRVLRIQEKGFGYESEEVMETLKKIVFYLDKMGMKDEKFSLQRRLSMLRNKYKQMVRY 579
BLAST of XM_017382170.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2MH77 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL09p007984:mrna}))
HSP 1 Score: 704.901 bits (1818), Expect = 0.000e+0
Identity = 359/579 (62.00%), Postives = 452/579 (78.07%), Query Frame = 0
Match: A0A7N2MH77 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL09p007984:mrna}))
HSP 1 Score: 704.901 bits (1818), Expect = 0.000e+0
Identity = 359/579 (62.00%), Postives = 452/579 (78.07%), Query Frame = 0
Query: 16 SISP-INYYRMNQMFLGVHSAQLPTHIVSLSVCLSNHNPNISNYLIYSGAPSSRVSVRCFAATGSLNLDSAVQRNLWDSSDSQRSDRKPNT---SKKSFDK---------DFELMLQELFDEIKSMIMMGNNNDALDLLEANYESVKQQIDAGDEGIEQAAILDVIALGYVAMGDLKMVEFLLNLLNKAVNELLDDEPLLDSVLTHMGSMYTTLGKFDNSMHMYRRALGIIEAKYGRNSNLLVTPLLGIGKVLGLIGRVTKATDIYNQAINVLETNMGAESEQLVLPLFALGNLLIKEGKTTDAENAFLRILNIYKILYGEGDERVGMTMCSLANVKCAEGNVDDAILLYQNALLLLKDSKNVSSNNGRIEKVMIDLAELLHSVGRGKEGRELLEECLLITEQHRGKEHPDTVTHLMNLATSYSRSKNFVEAERLLRTSLKIMSKTVSPDDQSISFPMLNLAVTLYNLDQNEEAEQLALEVLLIREKSFGKDSLPVGEALDCLVSIQSRLGKDDKELLGHLQRVLKIQEKAFGNDSEEVIGTLKKILFYLDKMGKKNEKFPVQKRLSMLRTKYKEMIRH 581
S+SP IN RM+Q+ L + S QL I SVCL +I Y++ A + + FA+ GSL++D A Q N + PN SK SFD+ DFE LQELF E+K MIM GN +DA+DLL+ANYE+VK+Q++AG +GIE+AA+LD+IALGY+A+GDLK V LL +L + V L D+EP LDSVL HMGSMY+TL KF+ S+ +YRR++ I+E +YG+NS L+TPLLG+ KVLG IGR TKA + Y++AI +LE N GAESE LV+ LF LGN+L+KEG+ TDAE F+RILN+YK LYGE D RVGM MCSLA+VKCA+GN D+AI LY+NAL ++KDS V+ ++ +EK+ IDLAELLH VGRGKEGR++LEECLLITE+++GKEHP +VTHL+NLATSYSRSKNFVEAERLLRTSL+IM KTV P+DQSI+FPML+LAVTLYNL ++EEAEQLALEVL IREK+FGKDSLPVGEALDCLVSIQ+RLGKDD ELL L+R++ IQE+ FG +SEEV+ TLKKI++YLDK+G+KNEKFP+QKRLS+LR KYK+ I++
Sbjct: 7 SLSPSINNKRMSQVCLHMQSDQLRKAITCFSVCLQKQKWSIKLYILPFRAIAGHHVSKPFASVGSLDVDVASQENHAPGVSA------PNNIQRSKMSFDQTSYPLGDMSDFEKQLQELFGEVKRMIMKGNKSDAIDLLKANYEAVKEQMNAGTKGIEEAALLDIIALGYMAVGDLKFVGSLLTMLTEVVESLKDNEPFLDSVLVHMGSMYSTLRKFEKSLLLYRRSIDILENRYGKNSIYLITPLLGMAKVLGAIGRSTKAVETYHRAIAILELNKGAESEDLVVALFGLGNILLKEGRATDAETHFVRILNLYKKLYGESDGRVGMAMCSLAHVKCAKGNPDEAIQLYENALQVIKDSNYVALDDSIMEKMRIDLAELLHVVGRGKEGRKMLEECLLITEKYKGKEHPSSVTHLLNLATSYSRSKNFVEAERLLRTSLEIMRKTVGPNDQSITFPMLHLAVTLYNLKRDEEAEQLALEVLHIREKAFGKDSLPVGEALDCLVSIQTRLGKDDGELLELLKRIVSIQEREFGYESEEVMETLKKIVYYLDKLGRKNEKFPLQKRLSILRMKYKQRIQY 579
BLAST of XM_017382170.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ASL7 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8533580.1}))
HSP 1 Score: 703.36 bits (1814), Expect = 0.000e+0
Identity = 360/571 (63.05%), Postives = 445/571 (77.93%), Query Frame = 0
Match: A0A5J5ASL7 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8533580.1}))
HSP 1 Score: 703.36 bits (1814), Expect = 0.000e+0
Identity = 360/571 (63.05%), Postives = 445/571 (77.93%), Query Frame = 0
Query: 18 SPINYYRMNQMFLGVHSAQLPTHIVSLSVCLSNHNPNISNYLIYSGAPSSRVSVRCFAATGSLNLDSAVQRNLWDS-----SDSQRSDRKPNTSKKSFDK--DFELMLQELFDEIKSMIMMGNNNDALDLLEANYESVKQQIDAGDEGIEQAAILDVIALGYVAMGDLKMVEFLLNLLNKAVNELLDDEPLLDSVLTHMGSMYTTLGKFDNSMHMYRRALGIIEAKYGRNSNLLVTPLLGIGKVLGLIGRVTKATDIYNQAINVLETNMGAESEQLVLPLFALGNLLIKEGKTTDAENAFLRILNIYKILYGEGDERVGMTMCSLANVKCAEGNVDDAILLYQNALLLLKDSKNVSSNNGRIEKVMIDLAELLHSVGRGKEGRELLEECLLITEQHRGKEHPDTVTHLMNLATSYSRSKNFVEAERLLRTSLKIMSKTVSPDDQSISFPMLNLAVTLYNLDQNEEAEQLALEVLLIREKSFGKDSLPVGEALDCLVSIQSRLGKDDKELLGHLQRVLKIQEKAFGNDSEEVIGTLKKILFYLDKMGKKNEKFPVQKRLSMLRTKYKEMIRH 581
+ N YR+ Q+ L +HS QL I+ SV L N NI Y + S +R FA GSL +D Q N S ++SQRS+ + S D DFE LQELF+E+K+MIM GN NDA+DLL+ANYE+VK+Q+DAG GIE+AAILD+IALGY+A GD K+V LL++LN+ V L DEPLLDS+L HMGSMY+ LGKF+ SM Y RAL I E ++G NS +LVTPLLG+ KVL IGR TKA D+Y++ IN+LE + GAESE LV+PL LGNLLIKEG+ TDAEN F+RILNIYK LYG+ +ERVG+ MCSLANVKCA+GNVD+AI LY++AL L +DSK+++ ++ +EK IDLAELLH VGRGKEGRELL+ECLL TE++RGKEHP VTHL+NLATSYSRSK+FVEAERLLR SL+IM KTV PDDQSI+FPML+LAVTLYNL+Q++EAE+LALEVL IREK+FG++SLPVGEALDCLV IQ+RLGKDD +LL L+RVL+IQEK FG +SEEV+ TLKKI+FY DKMG K+EKF +++RLSMLR KYK+ +R+
Sbjct: 9 TAFNNYRIGQVRLYMHSDQLQKGIMCFSVHLQNRRCNIKLYTKPYRSISRNSVLRAFATAGSLEVDGEHQGNRVSSGVLSPNNSQRSENLLDISSNPLDSMSDFERQLQELFNEVKTMIMKGNKNDAVDLLQANYEAVKEQMDAGARGIEEAAILDIIALGYMAAGDFKIVGSLLDMLNEVVESLKGDEPLLDSILIHMGSMYSALGKFEKSMPAYGRALEIQEREHGDNSTVLVTPLLGLAKVLSSIGRATKAVDLYHRVINILELSRGAESEDLVVPLIGLGNLLIKEGRATDAENPFIRILNIYKKLYGKDNERVGLAMCSLANVKCAKGNVDEAIHLYRHALKLFEDSKSMALDDDIMEKTRIDLAELLHEVGRGKEGRELLKECLLTTEKYRGKEHPSLVTHLINLATSYSRSKDFVEAERLLRASLQIMMKTVDPDDQSITFPMLHLAVTLYNLNQDDEAEKLALEVLHIREKAFGEESLPVGEALDCLVPIQTRLGKDDSDLLEMLKRVLRIQEKVFGYESEEVMETLKKIVFYSDKMGLKDEKFALKRRLSMLRNKYKQTVRY 579
BLAST of XM_017382170.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6RFH0 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8077672.1}))
HSP 1 Score: 694.886 bits (1792), Expect = 0.000e+0
Identity = 357/576 (61.98%), Postives = 448/576 (77.78%), Query Frame = 0
Match: A0A5N6RFH0 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8077672.1}))
HSP 1 Score: 694.886 bits (1792), Expect = 0.000e+0
Identity = 357/576 (61.98%), Postives = 448/576 (77.78%), Query Frame = 0
Query: 9 SSLVNSPSISPINYYRMNQMFLGVHSAQLPTHIVSLSVCLSNHNPNISNYLIYSGAPSSRVSVRCFAATGSLNLDSAVQRNLWDSSDSQRSDRKPNT---SKKSFDKDFELMLQELFDEIKSMIMMGNNNDALDLLEANYESVKQQIDAGDEGIEQAAILDVIALGYVAMGDLKMVEFLLNLLNKAVNELLDDEPLLDSVLTHMGSMYTTLGKFDNSMHMYRRALGIIEAKYGRNSNLLVTPLLGIGKVLGLIGRVTKATDIYNQAINVLETNMGAESEQLVLPLFALGNLLIKEGKTTDAENAFLRILNIYKILYGEGDERVGMTMCSLANVKCAEGNVDDAILLYQNALLLLKDSKNVSSNNGRIEKVMIDLAELLHSVGRGKEGRELLEECLLITEQHRGKEHPDTVTHLMNLATSYSRSKNFVEAERLLRTSLKIMSKTVSPDDQSISFPMLNLAVTLYNLDQNEEAEQLALEVLLIREKSFGKDSLPVGEALDCLVSIQSRLGKDDKELLGHLQRVLKIQEKAFGNDSEEVIGTLKKILFYLDKMGKKNEKFPVQKRLSMLRTKYKEMIRH 581
+SL++ P +N Y M+Q+ L +HS L SVCL N NI Y+I A + +R FA GSL D A Q N D SD PN SK SF+K+ LQELFDE+K +IMMGN +DA+DLL+ANYE+VK+Q++AG +GIE+AA+LD+IALGY+A+GDLK V LL +L + V+ L D+EPL+D VL HMGS+Y+ LGKF+ S+ YRR++ I+E ++G+NS L+TPLLG+ KVLG IGR KA + YN I++LE + GAESE LV+ L+ALGNLL+KEG+ DAE F+RIL +YK LYGE D RVGM MCS A+VKCA+GN D+AI LY+NAL ++KDS ++ ++G +EK+ IDLAELLH VGRGKEGRE+LEECLLITE+H+GK+HP +VTHL+NLA SYSRSKNFVEAERLLRTSL+IM KTV PDDQSISFPM++LAVTLY+L QNEEAEQLALEVL IREK+FGKDSLPVGEALDCLVSIQS LGKDD ELL L+R+L IQEK FG++ EEVI TLKKI++YLDK+G+KNEK P+QK+LS+LR KYK+ I++
Sbjct: 3 ASLLSLPP--SLNNYGMSQVCLHMHSGNLRKAATCSSVCLQNRKGNIKLYMIPMTAVTRLTVLRPFALVGSLEADVASQEN-HDISDVS----APNNFQRSKMSFEKE----LQELFDEVKRLIMMGNKSDAIDLLKANYEAVKEQMNAGSKGIEEAALLDIIALGYMAVGDLKFVGSLLAMLTEVVDSLKDNEPLVDVVLVHMGSLYSALGKFEKSLLAYRRSIDILENRHGKNSIFLITPLLGMAKVLGNIGRSIKAVETYNHTISILELSRGAESEDLVVVLYALGNLLLKEGRAADAETHFVRILTLYKKLYGENDGRVGMAMCSQAHVKCAKGNPDEAIQLYKNALQVIKDSNYMALDDGIMEKMRIDLAELLHVVGRGKEGREMLEECLLITEKHKGKDHPSSVTHLLNLAASYSRSKNFVEAERLLRTSLEIMRKTVGPDDQSISFPMMHLAVTLYHLKQNEEAEQLALEVLRIREKAFGKDSLPVGEALDCLVSIQSGLGKDDGELLEVLKRILSIQEKEFGHEGEEVIETLKKIVYYLDKLGRKNEKLPLQKKLSILRMKYKQRIQY 567
BLAST of XM_017382170.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4GG11 ((nephrocystin-3 isoform X1 {ECO:0000313|RefSeq:XP_018842830.1, ECO:0000313|RefSeq:XP_018842831.1}))
HSP 1 Score: 684.485 bits (1765), Expect = 0.000e+0
Identity = 355/576 (61.63%), Postives = 445/576 (77.26%), Query Frame = 0
Match: A0A2I4GG11 ((nephrocystin-3 isoform X1 {ECO:0000313|RefSeq:XP_018842830.1, ECO:0000313|RefSeq:XP_018842831.1}))
HSP 1 Score: 684.485 bits (1765), Expect = 0.000e+0
Identity = 355/576 (61.63%), Postives = 445/576 (77.26%), Query Frame = 0
Query: 16 SISP-INYYRMNQMFLGVHSAQLPTHIVSLSVCLSNHNPNISNYLIYSGAPSSRVSVRCFAATGSLNLDSAVQRNLWDSSDSQRSDRKPNTSKKSFDK---------DFELMLQELFDEIKSMIMMGNNNDALDLLEANYESVKQQIDAGDEGIEQAAILDVIALGYVAMGDLKMVEFLLNLLNKAVNELLDDEPLLDSVLTHMGSMYTTLGKFDNSMHMYRRALGIIEAKYGRNSNLLVTPLLGIGKVLGLIGRVTKATDIYNQAINVLETNMGAESEQLVLPLFALGNLLIKEGKTTDAENAFLRILNIYKILYGEGDERVGMTMCSLANVKCAEGNVDDAILLYQNALLLLKDSKNVSSNNGRIEKVMIDLAELLHSVGRGKEGRELLEECLLITEQHRGKEHPDTVTHLMNLATSYSRSKNFVEAERLLRTSLKIMSKTVSPDDQSISFPMLNLAVTLYNLDQNEEAEQLALEVLLIREKSFGKDSLPVGEALDCLVSIQSRLGKDDKELLGHLQRVLKIQEKAFGNDSEEVIGTLKKILFYLDKMGKKNEKFPVQKRLSMLRTKYKEMIRH 581
S+SP N YRM+Q+ L + S L I SVCL NI +Y+I A S R FA+ GSL D A N D+S + S+ SFD+ +FE LQELFDE+K MIMMGN NDA+DLL+ANYE+V ++++ G +GIE+AA+LD+I LGY+A+GDLK V LL +L + V+ L D+EPLLD VL HMGS+++ LGKFD S+ +YRR++ I+E +YG+NS LVTPLLG+ K LG IGR TKA +IY+ AI +LE + GAESE LV+ LF LGNLL+KEG++TDAE F+RIL +YK LYGE D RVGM MCSLA+VKCA+GN D+AI LY+NAL ++KDS ++ ++ +EK+ IDLAELLH VGRGKEGRE+LEE LLITE+++GKEHP VTHL+NLATSYSRSKNFVEAERLLRTSL+IM KTV PDDQS+++PML+LAVTLYNL +NEEAEQLAL+VL IREK+FGKDSLPVGEALDCL SIQ+RLG+DD ELL L+R+L IQE+ FG++SEEV+ TLKK L+YLDK+G+KNEKFP+QKRLS LR KYKE I++
Sbjct: 7 SLSPSTNNYRMSQVCLHMQSEHLRKAITCFSVCLQKQKCNIKHYMIPIKAVSRHRVYRTFASVGSLEADVASHGN--DASPGVSTPNNSRRSRMSFDQTNYPLDDMTNFEKQLQELFDEVKRMIMMGNRNDAMDLLKANYEAVIERMNKGIKGIEEAALLDIITLGYMAVGDLKFVASLLAMLAEVVDSLKDNEPLLDVVLMHMGSLFSALGKFDKSLLVYRRSIDILENRYGKNSIFLVTPLLGMAKALGSIGRSTKAVEIYHHAITILELSKGAESEDLVVALFGLGNLLLKEGRSTDAEPHFIRILTLYKKLYGENDGRVGMAMCSLAHVKCAKGNADEAIGLYKNALQVIKDSNYMALDDSIMEKMRIDLAELLHVVGRGKEGREMLEESLLITEKYKGKEHPSLVTHLVNLATSYSRSKNFVEAERLLRTSLEIMGKTVGPDDQSLTYPMLHLAVTLYNLKRNEEAEQLALDVLRIREKAFGKDSLPVGEALDCLASIQTRLGRDDGELLELLKRLLSIQEREFGHESEEVMETLKKTLYYLDKLGRKNEKFPLQKRLSTLRMKYKERIQY 580
BLAST of XM_017382170.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438BU82 ((Nephrocystin-3 {ECO:0000313|EMBL:RVW14488.1}))
HSP 1 Score: 681.019 bits (1756), Expect = 0.000e+0
Identity = 347/557 (62.30%), Postives = 434/557 (77.92%), Query Frame = 0
Match: A0A438BU82 ((Nephrocystin-3 {ECO:0000313|EMBL:RVW14488.1}))
HSP 1 Score: 681.019 bits (1756), Expect = 0.000e+0
Identity = 347/557 (62.30%), Postives = 434/557 (77.92%), Query Frame = 0
Query: 32 VHSAQLPTHIVSLSVCLSNHNPNISNYLIYSGAPSSRVSVRCFAATGSLNLDSAVQRN-----LWDSSDSQRSDR--KPNTSKKSFDKDFELMLQELFDEIKSMIMMGNNNDALDLLEANYESVKQQIDAGDEGIEQAAILDVIALGYVAMGDLKMVEFLLNLLNKAVNELLDDEPLLDSVLTHMGSMYTTLGKFDNSMHMYRRALGIIEAKYGRNSNLLVTPLLGIGKVLGLIGRVTKATDIYNQAINVLETNMGAESEQLVLPLFALGNLLIKEGKTTDAENAFLRILNIYKILYGEGDERVGMTMCSLANVKCAEGNVDDAILLYQNALLLLKDSKNVSSNNGRIEKVMIDLAELLHSVGRGKEGRELLEECLLITEQHRGKEHPDTVTHLMNLATSYSRSKNFVEAERLLRTSLKIMSKTVSPDDQSISFPMLNLAVTLYNLDQNEEAEQLALEVLLIREKSFGKDSLPVGEALDCLVSIQSRLGKDDKELLGHLQRVLKIQEKAFGNDSEEVIGTLKKILFYLDKMGKKNEKFPVQKRLSMLRTKYKEMIRH 581
+HS L ++ S+CL NI Y+I + +R FA GS D Q N ++ + QRS ++S + DFE LQELF+ +K+MI MGN DA+DLL+ANYE+VK+QID G +G+EQAAILD+I LGY+ +GDLK+V LL++++K V+ L DDE LLDSVL HMGS+Y+TLGKF+ SM MYRRAL I+E YG++S L+TPLLG+ K LG IGRVTKA +IY+QAI +LE + GAESE LV+PL LGNLLIKE K TDAE F RILNIYK YGE D RVG+ MCSLA+VKCA+G+ D+AI LY+NAL ++K SK ++ ++ +EK+ IDLAELLH VGRGKEGRELLEECLLITE+++G++HP +VTHL+NLATSYSRSKNFVEAERLLRTSL+IM KT+ PDDQSI+FPML+LAVTLY+L Q+EEAEQLAL+ L IRE +FGK+SLPVGEALDCLVSIQ+R+GKDD ELL L+RVL IQEK FG +SEEV+ TLKKI+FYLDKMG+K+EKFP+QKRLS+LR K+KE I++
Sbjct: 3 MHSEDLTKDVMCFSLCLKRQKCNIKLYMIPASTIVHHGVLRPFATIGSSGADGINQGNHVSLGVFAPNKFQRSRTLLHSSSSPSGDENDFERQLQELFNAVKTMIKMGNKKDAIDLLQANYEAVKEQIDVGAKGMEQAAILDIIVLGYMLVGDLKLVRSLLDMMDKIVDGLKDDEALLDSVLLHMGSVYSTLGKFEKSMLMYRRALEILEMTYGKDSAFLITPLLGMAKALGSIGRVTKAVEIYHQAIAILELSRGAESEDLVVPLLGLGNLLIKERKATDAEIPFTRILNIYKRSYGENDGRVGIAMCSLAHVKCAKGDADEAIQLYRNALQIVKVSKYMALDDNIMEKMRIDLAELLHVVGRGKEGRELLEECLLITEKYKGEDHPSSVTHLINLATSYSRSKNFVEAERLLRTSLRIMMKTMGPDDQSITFPMLHLAVTLYHLKQDEEAEQLALKALQIREAAFGKESLPVGEALDCLVSIQTRVGKDDSELLDLLKRVLIIQEKEFGYESEEVMITLKKIVFYLDKMGRKDEKFPLQKRLSLLRNKHKESIQY 559
BLAST of XM_017382170.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835JHL4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9667315.1}))
HSP 1 Score: 679.863 bits (1753), Expect = 0.000e+0
Identity = 338/568 (59.51%), Postives = 440/568 (77.46%), Query Frame = 0
Match: A0A835JHL4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9667315.1}))
HSP 1 Score: 679.863 bits (1753), Expect = 0.000e+0
Identity = 338/568 (59.51%), Postives = 440/568 (77.46%), Query Frame = 0
Query: 21 NYYRMNQMFLGVHSAQLPTHIVSLSVCLSNHNPNISNYLIYSGAPSSRVSVRCFAATGSLNLDSAVQRN-----LWDSSDSQRSDRKPNTSKKSFD--KDFELMLQELFDEIKSMIMMGNNNDALDLLEANYESVKQQIDAGDEGIEQAAILDVIALGYVAMGDLKMVEFLLNLLNKAVNELLDDEPLLDSVLTHMGSMYTTLGKFDNSMHMYRRALGIIEAKYGRNSNLLVTPLLGIGKVLGLIGRVTKATDIYNQAINVLETNMGAESEQLVLPLFALGNLLIKEGKTTDAENAFLRILNIYKILYGEGDERVGMTMCSLANVKCAEGNVDDAILLYQNALLLLKDSKNVSSNNGRIEKVMIDLAELLHSVGRGKEGRELLEECLLITEQHRGKEHPDTVTHLMNLATSYSRSKNFVEAERLLRTSLKIMSKTVSPDDQSISFPMLNLAVTLYNLDQNEEAEQLALEVLLIREKSFGKDSLPVGEALDCLVSIQSRLGKDDKELLGHLQRVLKIQEKAFGNDSEEVIGTLKKILFYLDKMGKKNEKFPVQKRLSMLRTKYKEMIRH 581
+Y R+ ++F+ ++S L I S+CL +I Y+I + + ++ FA+ GSLN + Q N S+D +RS ++S K D DFE LQELFDE+K MI MGN NDA+DLL+ANYE VK+QI+AG GIE+AA LD+IALGY+A+GDLK V F+LN L++ V L DDEPLLDSVL HMGSMY+ LGKF+ SMH+Y+R + +E K+G+ S LV+PLLG+ K+LG IG+ T A ++Y + I++LE++ GAES+ LV+PL LGNLLIKEG+ TDAE+ F RIL+IYK YGE D R GM +CS+A+VKCA GN ++AI LY+ AL ++KD+ ++ ++ +E++ IDLAELLH VGRG EGRELLEECLLITE+++GK+HP +VTHL+NLATSYS+SKN+VEAERLLRTSL+IM K+V PDD SI+FPML+LAVTLY L+Q+EEAEQL LEVL IREK+FGKDSLPVGEALDCLVSIQ+RLGK + ELL L++VLKIQEK FG +SEEV+ TLKKI+FYLDK G+K+EKF +QKRLS+LR KYK+M+++
Sbjct: 9 DYIRITRVFVDLNSRSLQRGITCFSICLQKQKCSIKLYMIPTTTVAQHWMLKTFASAGSLNAEVECQENHISSGFSTSNDFRRSKTVADSSSKPSDGVDDFERQLQELFDEVKMMIKMGNKNDAVDLLQANYEFVKEQINAGSRGIEEAATLDIIALGYMAIGDLKSVGFILNKLDEVVENLKDDEPLLDSVLIHMGSMYSALGKFEKSMHVYQRVIATLERKHGKGSAFLVSPLLGMAKILGSIGKATTAIEVYQRVISILESSRGAESKDLVVPLSGLGNLLIKEGRATDAESLFNRILSIYKESYGEYDGRFGMALCSVAHVKCATGNAEEAINLYRKALQVIKDADYMALDDSIMERMRIDLAELLHVVGRGNEGRELLEECLLITEKYKGKDHPSSVTHLINLATSYSQSKNYVEAERLLRTSLEIMMKSVRPDDSSITFPMLHLAVTLYRLNQDEEAEQLTLEVLRIREKAFGKDSLPVGEALDCLVSIQTRLGKSEAELLELLKQVLKIQEKEFGYESEEVMRTLKKIVFYLDKTGRKDEKFSMQKRLSVLRMKYKQMMQY 576
BLAST of XM_017382170.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2LM24 ((Uncharacterized protein {ECO:0000313|EMBL:VFU42049.1}))
HSP 1 Score: 679.093 bits (1751), Expect = 0.000e+0
Identity = 340/579 (58.72%), Postives = 447/579 (77.20%), Query Frame = 0
Match: A0A6N2LM24 ((Uncharacterized protein {ECO:0000313|EMBL:VFU42049.1}))
HSP 1 Score: 679.093 bits (1751), Expect = 0.000e+0
Identity = 340/579 (58.72%), Postives = 447/579 (77.20%), Query Frame = 0
Query: 10 SLVNSPSISPINYYRMNQMFLGVHSAQLPTHIVSLSVCLSNHNPNISNYLIYSGAPSSRVSVRCFAATGSLNLDSAVQRN-----LWDSSDSQRSDRKPNTSKKSFD--KDFELMLQELFDEIKSMIMMGNNNDALDLLEANYESVKQQIDAGDEGIEQAAILDVIALGYVAMGDLKMVEFLLNLLNKAVNELLDDEPLLDSVLTHMGSMYTTLGKFDNSMHMYRRALGIIEAKYGRNSNLLVTPLLGIGKVLGLIGRVTKATDIYNQAINVLETNMGAESEQLVLPLFALGNLLIKEGKTTDAENAFLRILNIYKILYGEGDERVGMTMCSLANVKCAEGNVDDAILLYQNALLLLKDSKNVSSNNGRIEKVMIDLAELLHSVGRGKEGRELLEECLLITEQHRGKEHPDTVTHLMNLATSYSRSKNFVEAERLLRTSLKIMSKTVSPDDQSISFPMLNLAVTLYNLDQNEEAEQLALEVLLIREKSFGKDSLPVGEALDCLVSIQSRLGKDDKELLGHLQRVLKIQEKAFGNDSEEVIGTLKKILFYLDKMGKKNEKFPVQKRLSMLRTKYKEMIRH 581
SL++ P P++ R+ ++F+ ++S L I S+CL +I Y+I + + ++ FA+ GSLN + Q N S+D +RS ++S K D DFE LQELFDE+K MI MGN NDA+DLL+ANYE VK+QI+AG GIE+AA LD+IALGY+A+GDLK V F+LN L++ V L DDEPLLDSVL HMGSMY+ LGK++ S+H+Y+R + +E K+G+ S LV+PLLG+ K+LG IG+ T A ++Y + I++LE++ GAES+ LV+PL LGNLLIKEG+ TDAE+ F RIL+IYK YGE D R GM +CS+A+VKCA GN ++AI LY+ AL ++KD+ ++ ++ +E++ IDLAELLH VGRG EGRELLEECLLITE+++GK+HP +VTHL+NLATSYS+SKN+VEAERLLRTSL+IM K+V PDD SI+FPML+LAVTLY L+Q+EEAEQLALEVL IREK+FGKDSLPVGEALDCLVSIQ+RLGK + ELL L++VLKIQEK FG +SEEV+ TLKKI+FYLDK G+K+EKF +QKRLS+LR KYK+M+++
Sbjct: 4 SLLHHP---PLSNQRITRVFVDLNSRSLQRGITCFSICLQKQKCSIKLYMIPTTTVAQHWMLKTFASAGSLNAEVECQENHISSGFSTSNDFRRSKTVADSSSKPSDGVDDFERQLQELFDEVKMMIKMGNKNDAVDLLQANYEFVKEQINAGSRGIEEAATLDIIALGYMAIGDLKSVGFILNKLDEVVENLKDDEPLLDSVLIHMGSMYSALGKYEKSIHVYQRVIATLERKHGKGSAFLVSPLLGMAKILGSIGKATTAIEVYQRVISILESSRGAESKDLVVPLSGLGNLLIKEGRATDAESLFNRILSIYKESYGEYDGRFGMALCSVAHVKCATGNAEEAINLYRKALQVIKDADYMALDDSIMERMRIDLAELLHVVGRGNEGRELLEECLLITEKYKGKDHPSSVTHLINLATSYSQSKNYVEAERLLRTSLEIMMKSVRPDDSSITFPMLHLAVTLYRLNQDEEAEQLALEVLRIREKAFGKDSLPVGEALDCLVSIQTRLGKSEAELLELLKQVLKIQEKEFGYESEEVMRTLKKIVFYLDKTGRKDEKFSMQKRLSVLRMKYKQMMQY 579
BLAST of XM_017382170.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067LAW7 ((Uncharacterized protein {ECO:0000313|EMBL:KDP45557.1}))
HSP 1 Score: 678.707 bits (1750), Expect = 0.000e+0
Identity = 345/567 (60.85%), Postives = 437/567 (77.07%), Query Frame = 0
Match: A0A067LAW7 ((Uncharacterized protein {ECO:0000313|EMBL:KDP45557.1}))
HSP 1 Score: 678.707 bits (1750), Expect = 0.000e+0
Identity = 345/567 (60.85%), Postives = 437/567 (77.07%), Query Frame = 0
Query: 23 YRMNQMFLGVHSAQLPTHIVSLSVCLSNHNPNISNYLIYSGAPSSRVSVRCFAATGSLNLDSAVQRNLWDSSDSQRSD--------RKPNTSKKSFDKDFELMLQELFDEIKSMIMMGNNNDALDLLEANYESVKQQIDAGDEGIEQAAILDVIALGYVAMGDLKMVEFLLNLLNKAVNELLDDEPLLDSVLTHMGSMYTTLGKFDNSMHMYRRALGIIEAKYGRNSNLLVTPLLGIGKVLGLIGRVTKATDIYNQAINVLETNMGAESEQLVLPLFALGNLLIKEGKTTDAENAFLRILNIYKILYGEGDERVGMTMCSLANVKCAEGNVDDAILLYQNALLLLKDSKNVSSNNGRIEKVMIDLAELLHSVGRGKEGRELLEECLLITEQHRGKEHPDTVTHLMNLATSYSRSKNFVEAERLLRTSLKIMSKTVSPDDQSISFPMLNLAVTLYNLDQNEEAEQLALEVLLIREKSFGKDSLPVGEALDCLVSIQSRLGKDDKELLGHLQRVLKIQEKAFGNDSEEVIGTLKKILFYLDKMGKKNEKFPVQKRLSMLRTKYKEMIRH 581
+R+ Q + HS+ + S+CL N N ++I + A S ++ F + SLN++ QR S S SD P+ + S + DFE LQELFDE+K+MI+MGN +DA+DLL+ANYE VK+QI+AG +GIE+AA LDVIALGY+A GDLK V +LNLLN+ V + DD PLL+SVL HMGSMY+ LGKF+ SM +Y++ +G++E+KYG++S LV+PLLG+ KVLG IGRV KA +YN+ I +LE+ GAESE LV+PLF LGNLLIKEG+TTDAE+ F RIL IYK LYGE D RVGM +CSLA+VKC+ GNV++AI Y+ L L+K+S ++ ++ +EK+ IDLAELLH VGRGKEGRELLEECLLITE+++GK HP V HL+NLATSYS SKNFVEAERLLR SL+I+ KTVSPDDQS+SFPML+LAVTLYNL+++EEAE LALEVL IREK+FGKDSLPVGEALDCLVSIQ+RLG+ D ELL L+RVLKIQEK FGN+S+EV+ TLKKI+FYLDK G+K+E F +QKRLS+LR KYK+ +R+
Sbjct: 14 HRIAQACVDFHSSN-QRGVRRFSICLKNKGCNFKLFMIPTQAISCHCVLKDFTSVASLNVEGTCQRKFVSSGVSNASDFLRSETLLDGPSNPRGSVN-DFESQLQELFDEVKAMILMGNKDDAMDLLQANYEVVKEQINAGAKGIEEAATLDVIALGYMASGDLKSVGSVLNLLNEVVESVKDDGPLLESVLMHMGSMYSALGKFEKSMIIYQKVIGVLESKYGKSSIFLVSPLLGMAKVLGSIGRVAKAIKVYNRVIIILESVRGAESEDLVVPLFGLGNLLIKEGRTTDAESNFTRILRIYKKLYGEKDGRVGMALCSLAHVKCSTGNVEEAIDSYKKGLWLIKESNYMAVDDSIMEKMRIDLAELLHVVGRGKEGRELLEECLLITEKYKGKGHPSLVPHLLNLATSYSESKNFVEAERLLRISLEIVKKTVSPDDQSVSFPMLHLAVTLYNLNRDEEAELLALEVLHIREKAFGKDSLPVGEALDCLVSIQTRLGRADDELLELLKRVLKIQEKEFGNESKEVMQTLKKIVFYLDKAGRKDEIFSIQKRLSVLRMKYKQSVRY 578
BLAST of XM_017382170.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: E0CV63 ((Uncharacterized protein {ECO:0000313|EMBL:CBI23024.3}))
HSP 1 Score: 677.552 bits (1747), Expect = 0.000e+0
Identity = 345/557 (61.94%), Postives = 433/557 (77.74%), Query Frame = 0
Match: E0CV63 ((Uncharacterized protein {ECO:0000313|EMBL:CBI23024.3}))
HSP 1 Score: 677.552 bits (1747), Expect = 0.000e+0
Identity = 345/557 (61.94%), Postives = 433/557 (77.74%), Query Frame = 0
Query: 32 VHSAQLPTHIVSLSVCLSNHNPNISNYLIYSGAPSSRVSVRCFAATGSLNLDSAVQRN-----LWDSSDSQRSDR--KPNTSKKSFDKDFELMLQELFDEIKSMIMMGNNNDALDLLEANYESVKQQIDAGDEGIEQAAILDVIALGYVAMGDLKMVEFLLNLLNKAVNELLDDEPLLDSVLTHMGSMYTTLGKFDNSMHMYRRALGIIEAKYGRNSNLLVTPLLGIGKVLGLIGRVTKATDIYNQAINVLETNMGAESEQLVLPLFALGNLLIKEGKTTDAENAFLRILNIYKILYGEGDERVGMTMCSLANVKCAEGNVDDAILLYQNALLLLKDSKNVSSNNGRIEKVMIDLAELLHSVGRGKEGRELLEECLLITEQHRGKEHPDTVTHLMNLATSYSRSKNFVEAERLLRTSLKIMSKTVSPDDQSISFPMLNLAVTLYNLDQNEEAEQLALEVLLIREKSFGKDSLPVGEALDCLVSIQSRLGKDDKELLGHLQRVLKIQEKAFGNDSEEVIGTLKKILFYLDKMGKKNEKFPVQKRLSMLRTKYKEMIRH 581
+HS L ++ S+CL NI Y+I + +R FA GS D Q N ++ + QRS ++S + DFE LQELF+ +K+MI MGN DA+DLL+ANYE+VK+QID G +G+EQAAILD+I LGY+ +GDLK+V LL++++K V+ L DDE LLDSVL HMGS+Y+TLGKF+ SM MYRRAL I+E YG++S L+TPLLG+ K LG IGRVTKA +IY+QAI +LE + GAESE LV+PL LGNLLIKE K TDAE F RILNIYK YGE D RVG+ MCSLA+VKCA+G+ D+AI LY+NAL ++K SK ++ ++ +EK+ IDLAELLH VGRGKEGRELLEECLLITE+++G++HP +VTHL+NLATSYSRSKNFVEAERLLRTSL+IM KT+ PDDQSI+FPML+LAVTLY+L ++EEAEQL L+ L IRE +FGK+SLPVGEALDCLVSIQ+R+GKDD ELL L+RVL IQEK FG +SEEV+ TLKKI+FYLDKMG+K+EKFP+QKRLS+LR K+KE I++
Sbjct: 3 MHSEDLTKDVMCFSLCLKRQKCNIKLYMIPASTIVHHGVLRPFATIGSSGADGINQGNHVSLGVFAPNKFQRSRTLLHSSSSPSGDENDFERQLQELFNAVKTMIKMGNKKDAIDLLQANYEAVKEQIDVGAKGMEQAAILDIIVLGYMLVGDLKLVRSLLDMMDKIVDGLKDDEALLDSVLLHMGSVYSTLGKFEKSMLMYRRALEILEMTYGKDSAFLITPLLGMAKALGSIGRVTKAVEIYHQAIAILELSRGAESEDLVVPLLGLGNLLIKERKATDAEIPFTRILNIYKRSYGENDGRVGIAMCSLAHVKCAKGDADEAIQLYRNALQIVKVSKYMALDDNIMEKMRIDLAELLHVVGRGKEGRELLEECLLITEKYKGEDHPSSVTHLINLATSYSRSKNFVEAERLLRTSLRIMMKTMGPDDQSITFPMLHLAVTLYHLKRDEEAEQLTLKALQIREAAFGKESLPVGEALDCLVSIQTRVGKDDSELLDLLKRVLIIQEKEFGYESEEVMITLKKIVFYLDKMGRKDEKFPLQKRLSLLRNKHKESIQY 559
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6YMU5 | E-Value: 0.000e+0, PID: 64.29 | (Putative nephrocystin-3 isoform X1 {ECO:0000313|E... [more] |
| A0A7N2MH77 | E-Value: 0.000e+0, PID: 62.00 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A5J5ASL7 | E-Value: 0.000e+0, PID: 63.05 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8533... [more] |
| A0A5N6RFH0 | E-Value: 0.000e+0, PID: 61.98 | (Uncharacterized protein {ECO:0000313|EMBL:KAE8077... [more] |
| A0A2I4GG11 | E-Value: 0.000e+0, PID: 61.63 | (nephrocystin-3 isoform X1 {ECO:0000313|RefSeq:XP_... [more] |
| A0A438BU82 | E-Value: 0.000e+0, PID: 62.30 | (Nephrocystin-3 {ECO:0000313|EMBL:RVW14488.1})[more] |
| A0A835JHL4 | E-Value: 0.000e+0, PID: 59.51 | (Uncharacterized protein {ECO:0000313|EMBL:KAF9667... [more] |
| A0A6N2LM24 | E-Value: 0.000e+0, PID: 58.72 | (Uncharacterized protein {ECO:0000313|EMBL:VFU4204... [more] |
| A0A067LAW7 | E-Value: 0.000e+0, PID: 60.85 | (Uncharacterized protein {ECO:0000313|EMBL:KDP4555... [more] |
| E0CV63 | E-Value: 0.000e+0, PID: 61.94 | (Uncharacterized protein {ECO:0000313|EMBL:CBI2302... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |