XM_017387638.1

Resource Type: 
Polypeptide
Name: 
XM_017387638.1
Identifier: 
XM_017387638.1-protein
Sequence: 
MAGIRLPPEDSDVSTARPPTNTDLISDDDRSVAADSWSIKSDYGSTLDDD
QRHADASEVLSAVPYRSASDYSSDKEEPDAEPVSSMLGFQSYWDAAYADE
LANFREHGHTGEVWFGADVMEMVASWTKGLCNDIAQGQMLNHVADDTSVT
PEQGEKDLTDWSVLDVGTGNGLLLQEFAKQGFTDLTGTDYSEGAIDLARS
LADRDGFSGLKFLVDDVLDTKIERKFQLVIDKGTLDAIGLHPDGPIKRIM
YWDSISKLVATGGLLVITSCNSTKDELVQEVDNYNHRRVAASQESETSVS
QEAGSNSPLFSYLDHIRSYPTFMFGGSVGSRVATVAFVRK
Sequence Length: 
340
Sequence Checksum: 
e1191a30cd3fa1ad0604d86f839b0838
View location in JBrowse: 
DCARv2_Chr3:27467634..27473234+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017387638.1, derives from mRNA, XM_017387638.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017387638.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017387638.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AVM1 (Protein-lysine N-methyltransferase Din_030198 {ECO:0000256|HAMAP-Rule:MF_03188} (2.1.1.- {ECO:0000256|HAMAP-Rule:MF_03188}))

HSP 1 Score: 573.548 bits (1477), Expect = 0.000e+0
Identity = 276/340 (81.18%), Postives = 300/340 (88.24%), Query Frame = 0
 
Query:    1 MAGIRLPPEDSDVSTARPPTNTDLISDDDRSVAADSWSIKSDYGSTLDDDQRHADASEVLSAVPYRSASDYSSDKEEPDAEPVSSMLGFQSYWDAAYADELANFREHGHTGEVWFGADVMEMVASWTKGLCNDIAQGQMLNHVADDTSVTPEQGEKDLTDWSVLDVGTGNGLLLQEFAKQGFTDLTGTDYSEGAIDLARSLADRDGFSGLKFLVDDVLDTKIERKFQLVIDKGTLDAIGLHPDGPIKRIMYWDSISKLVATGGLLVITSCNSTKDELVQEVDNYNHRRVAASQESETSVSQEAGSNSPLFSYLDHIRSYPTFMFGGSVGSRVATVAFVRK 340
            MAGIRLPPEDSD+S AR    TDLISDDDRSVAADSWSIKSDYGSTLDDDQRHADASE LSA  +R+ASDYSSDKEEPDAE V+S+LGFQSYWDA YADEL NFREHGH GEVWFGADVMEMV SWTK LC DI+QG ++NHV DD S   EQG+KDL  WSVLD+GTGNGLLLQE AKQGF+DLTGTDYSEGAIDLARSLADRDGF+ +KFLVDDVL+TK+E+KFQLV+DKGTLDAIGLHPDGPIKRIMYWDS+SKLVA GG+LVITSCNSTKDELVQEVD++N RR  ASQE ET   QE G + P F YLDH+RSYPTF FGGSVGSRVATVAF+R 
Sbjct:    1 MAGIRLPPEDSDLSQARALATTDLISDDDRSVAADSWSIKSDYGSTLDDDQRHADASEALSAATFRAASDYSSDKEEPDAEAVASLLGFQSYWDATYADELTNFREHGHVGEVWFGADVMEMVVSWTKSLCTDISQGHLVNHVDDDKSEPVEQGDKDLACWSVLDIGTGNGLLLQELAKQGFSDLTGTDYSEGAIDLARSLADRDGFTNIKFLVDDVLETKLEQKFQLVMDKGTLDAIGLHPDGPIKRIMYWDSVSKLVAPGGILVITSCNSTKDELVQEVDSFNQRRAGASQEPETPGDQETGRDPPPFRYLDHVRSYPTFTFGGSVGSRVATVAFLRN 340
[Close]
BLAST of XM_017387638.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AXT8 (Protein-lysine N-methyltransferase Din_030197 {ECO:0000256|HAMAP-Rule:MF_03188} (2.1.1.- {ECO:0000256|HAMAP-Rule:MF_03188}))

HSP 1 Score: 568.155 bits (1463), Expect = 0.000e+0
Identity = 274/340 (80.59%), Postives = 297/340 (87.35%), Query Frame = 0
 
Query:    1 MAGIRLPPEDSDVSTARPPTNTDLISDDDRSVAADSWSIKSDYGSTLDDDQRHADASEVLSAVPYRSASDYSSDKEEPDAEPVSSMLGFQSYWDAAYADELANFREHGHTGEVWFGADVMEMVASWTKGLCNDIAQGQMLNHVADDTSVTPEQGEKDLTDWSVLDVGTGNGLLLQEFAKQGFTDLTGTDYSEGAIDLARSLADRDGFSGLKFLVDDVLDTKIERKFQLVIDKGTLDAIGLHPDGPIKRIMYWDSISKLVATGGLLVITSCNSTKDELVQEVDNYNHRRVAASQESETSVSQEAGSNSPLFSYLDHIRSYPTFMFGGSVGSRVATVAFVRK 340
            MAGIR  PEDSDVS AR P  TDLISDDDRSVAADSWSIKSDYGSTLDDDQRHADASE LSA  + +ASDYSSDKEEPDA  V+SMLGFQSYWDA YADEL NFREHGH GEVWFGADVME VASWTK LC DI+QG ++NHV D+ S   EQG+KDL  WSVLD+GTGNG+LLQE AKQGF+DLTGTDYSEGAIDLARSLADRDGF+ +KFLVDDVL+TK+E+KFQLV+DKGTLDAIGLHPDGPIKRIMYWDS+SKLVA GG+LVITSCNSTKDELVQEV N+  RRV  SQE ET   QEAG + P F YLDH+RSYPTFMFGGSVGSRVATVAF+R 
Sbjct:    1 MAGIRFQPEDSDVSQARAPATTDLISDDDRSVAADSWSIKSDYGSTLDDDQRHADASEALSASTFPTASDYSSDKEEPDAVAVASMLGFQSYWDATYADELTNFREHGHAGEVWFGADVMETVASWTKSLCTDISQGHLVNHVDDEKSEPVEQGDKDLASWSVLDIGTGNGMLLQELAKQGFSDLTGTDYSEGAIDLARSLADRDGFTNIKFLVDDVLETKLEQKFQLVMDKGTLDAIGLHPDGPIKRIMYWDSVSKLVAPGGILVITSCNSTKDELVQEVGNFKQRRVGVSQEPETPGDQEAGRDPPPFRYLDHVRSYPTFMFGGSVGSRVATVAFLRN 340
[Close]
BLAST of XM_017387638.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AXC9 (Protein-lysine N-methyltransferase Din_030196 {ECO:0000256|HAMAP-Rule:MF_03188} (2.1.1.- {ECO:0000256|HAMAP-Rule:MF_03188}))

HSP 1 Score: 562.377 bits (1448), Expect = 0.000e+0
Identity = 272/340 (80.00%), Postives = 296/340 (87.06%), Query Frame = 0
 
Query:    1 MAGIRLPPEDSDVSTARPPTNTDLISDDDRSVAADSWSIKSDYGSTLDDDQRHADASEVLSAVPYRSASDYSSDKEEPDAEPVSSMLGFQSYWDAAYADELANFREHGHTGEVWFGADVMEMVASWTKGLCNDIAQGQMLNHVADDTSVTPEQGEKDLTDWSVLDVGTGNGLLLQEFAKQGFTDLTGTDYSEGAIDLARSLADRDGFSGLKFLVDDVLDTKIERKFQLVIDKGTLDAIGLHPDGPIKRIMYWDSISKLVATGGLLVITSCNSTKDELVQEVDNYNHRRVAASQESETSVSQEAGSNSPLFSYLDHIRSYPTFMFGGSVGSRVATVAFVRK 340
            MAGIRLPPEDSD+S AR    TDLISDDDRSVAADSWSIKSDYGSTLDDDQRHADASE LSA  + +ASDYSSDKEEPDA  V+SMLGFQSYWDA YADEL NFREHGH GEVWFGADVME VASWTK LC DI+QG ++NHV DD S   EQG+KDL  WSVLD+GTGNGLLLQE AKQGF+DLTGTDYSEGA+DLARSL+DRDG + +KF VDDVL+TK+ERKFQLV+DKGTLDAIGLHPDGPIKRIMYWDS+SKLVA GG+LVITSCNSTKDELVQEVD++N RR  ASQE ET   QE G + P F YLDH+RSYPTF FGGSVGSRVATVAF+R 
Sbjct:    1 MAGIRLPPEDSDLSQARALATTDLISDDDRSVAADSWSIKSDYGSTLDDDQRHADASEALSASTFPTASDYSSDKEEPDAVAVASMLGFQSYWDATYADELTNFREHGHAGEVWFGADVMETVASWTKSLCTDISQGHLVNHVDDDKSEPVEQGDKDLACWSVLDIGTGNGLLLQELAKQGFSDLTGTDYSEGAVDLARSLSDRDGLTNIKFWVDDVLETKLERKFQLVMDKGTLDAIGLHPDGPIKRIMYWDSVSKLVAPGGILVITSCNSTKDELVQEVDSFNQRRAGASQEPETPGDQETGRDPPPFRYLDHVRSYPTFTFGGSVGSRVATVAFLRN 340
[Close]
BLAST of XM_017387638.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C1F6 (Protein-lysine N-methyltransferase F0562_004186 {ECO:0000256|HAMAP-Rule:MF_03188} (2.1.1.- {ECO:0000256|HAMAP-Rule:MF_03188}))

HSP 1 Score: 561.607 bits (1446), Expect = 0.000e+0
Identity = 272/339 (80.24%), Postives = 299/339 (88.20%), Query Frame = 0
 
Query:    1 MAGIRLPPEDSDVSTARPPTNTDLISDDDRSVAADSWSIKSDYGSTLDDDQRHADASEVLSAVPYRSASDYSSDKEEPDAEPVSSMLGFQSYWDAAYADELANFREHGHTGEVWFGADVMEMVASWTKGLCNDIAQGQMLNHVADDTSVTPEQGEKDLTDWSVLDVGTGNGLLLQEFAKQGFTDLTGTDYSEGAIDLARSLADRDGFSGLKFLVDDVLDTKIERKFQLVIDKGTLDAIGLHPDGPIKRIMYWDSISKLVATGGLLVITSCNSTKDELVQEVDNYNHRRVAASQESETSVSQEAGSNSPLFSYLDHIRSYPTFMFGGSVGSRVATVAFVR 339
            MAGIRLPPEDSD+S ARP   TDLISDDDRSVAADSWSIKSDYGSTLDDDQRHADASE LS V +R+ASDYSSDKEEPDAE V+SMLGFQSYWD+ YADELANFREHGH GEVWFGADVME VASWTK +C DI+QG ++NHV +D S   EQG+KDL  WSVLD+GTGNGLLLQE AKQGF+DLTGTDYSEGAIDLARS++DRDGF+ +KFLVDDVL+TK+E+KFQLV+DKGTLDAIGLHPDG IKRIMYWDS+SKLVA GG+LVITSCNSTKDELVQEV  +N +R  ASQE ET   QE+G   P F YLDH+RSYPTFMFGGSVGSRVATVAF R
Sbjct:    1 MAGIRLPPEDSDLSQARPLATTDLISDDDRSVAADSWSIKSDYGSTLDDDQRHADASEALSTVTFRTASDYSSDKEEPDAEAVASMLGFQSYWDSTYADELANFREHGHAGEVWFGADVMETVASWTKSMCADISQGHLVNHVDNDKSEPVEQGDKDLASWSVLDIGTGNGLLLQELAKQGFSDLTGTDYSEGAIDLARSISDRDGFTNIKFLVDDVLETKLEQKFQLVMDKGTLDAIGLHPDGSIKRIMYWDSVSKLVAPGGILVITSCNSTKDELVQEVGGFN-QRTGASQEPETPGDQESGRYPPPFRYLDHVRSYPTFMFGGSVGSRVATVAFQR 338
[Close]
BLAST of XM_017387638.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RYG4 (Protein-lysine N-methyltransferase CEY00_Acc02226 {ECO:0000256|HAMAP-Rule:MF_03188} (2.1.1.- {ECO:0000256|HAMAP-Rule:MF_03188}))

HSP 1 Score: 559.681 bits (1441), Expect = 0.000e+0
Identity = 267/338 (78.99%), Postives = 296/338 (87.57%), Query Frame = 0
 
Query:    1 MAGIRLPPEDSDVSTARPPTNTDLISDDDRSVAADSWSIKSDYGSTLDDDQRHADASEVLSAVPYRSASDYSSDKEEPDAEPVSSMLGFQSYWDAAYADELANFREHGHTGEVWFGADVMEMVASWTKGLCNDIAQGQMLNHVADDTSVTPEQGEKDLTDWSVLDVGTGNGLLLQEFAKQGFTDLTGTDYSEGAIDLARSLADRDGFSGLKFLVDDVLDTKIERKFQLVIDKGTLDAIGLHPDGPIKRIMYWDSISKLVATGGLLVITSCNSTKDELVQEVDNYNHRRVAASQESETSVSQEAGSNSPLFSYLDHIRSYPTFMFGGSVGSRVATVAFV 338
            MA IRL PEDSD   AR  T  DLISDDDRSVAADSWSIKSDYGSTLDDDQRHADA++ LSAV +R+ASDYSSDKEEPDAE V+SMLGFQSYWDA YADELANFREHGH GEVWFGADVME +ASWTK LC D +QG ++N V D  + T EQ +KDL+ WSVLD+GTGNGLLLQE AKQGF DLTGTDYSEGAIDLAR+L+DRDGF+ +KFLVDD+LDTK+ERK++LV+DKGTLDAIGLHPDGPIKRIMYW+S+S+LVA GG+LVITSCNSTKDELVQEVDN N RR  ASQE+ T V QEAG N P F YLDH+RSYPTFMFGGSVGSRVATVAF+
Sbjct:    1 MAAIRLQPEDSDAGHARALTAADLISDDDRSVAADSWSIKSDYGSTLDDDQRHADAADALSAVTFRAASDYSSDKEEPDAEAVTSMLGFQSYWDATYADELANFREHGHAGEVWFGADVMETIASWTKSLCTDNSQGHLVNQVLDSKAGTVEQSDKDLSSWSVLDIGTGNGLLLQELAKQGFCDLTGTDYSEGAIDLARNLSDRDGFTNIKFLVDDILDTKLERKYKLVVDKGTLDAIGLHPDGPIKRIMYWNSVSRLVAPGGILVITSCNSTKDELVQEVDNLNQRRDGASQEAGTLVDQEAGRNPPSFCYLDHVRSYPTFMFGGSVGSRVATVAFL 338
[Close]
BLAST of XM_017387638.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AKA9 (Protein-lysine N-methyltransferase F0562_005447 {ECO:0000256|HAMAP-Rule:MF_03188} (2.1.1.- {ECO:0000256|HAMAP-Rule:MF_03188}))

HSP 1 Score: 556.984 bits (1434), Expect = 0.000e+0
Identity = 267/340 (78.53%), Postives = 296/340 (87.06%), Query Frame = 0
 
Query:    1 MAGIRLPPEDSDVSTARPPTNTDLISDDDRSVAADSWSIKSDYGSTLDDDQRHADASEVLSAVPYRSASDYSSDKEEPDAEPVSSMLGFQSYWDAAYADELANFREHGHTGEVWFGADVMEMVASWTKGLCNDIAQGQMLNHVADDTSVTPEQGEKDLTDWSVLDVGTGNGLLLQEFAKQGFTDLTGTDYSEGAIDLARSLADRDGFSGLKFLVDDVLDTKIERKFQLVIDKGTLDAIGLHPDGPIKRIMYWDSISKLVATGGLLVITSCNSTKDELVQEVDNYNHRRVAASQESETSVSQEAGSNSPLFSYLDHIRSYPTFMFGGSVGSRVATVAFVRK 340
            MAG RLPPEDSD+S AR P  TDLISDDDRSVAADSWSIKSDYGSTLDDDQRHADASE LSA  + +ASDYSSDKEEPDA+ V+SMLGFQSYWDA YADE+ NFREHGH GEVWFGADVMEMV SWTK LC +I QGQ+ NHV DD S   E+G+K L  WSVLD+GTGNG+LLQE AKQGF+DLTGTD+S+GAIDLARSLADRDGF+ +KFLVDDVL+TK+ERKF+LV+DKGTLDAIGLHPDG IKRIMYW S+SKLVA GG+LVITSCNSTKDELVQEV N+N R V A QE ET  +QEAG + P F +LDH+RSYPTFMFGGSVGSRVATVAF+R 
Sbjct:    1 MAGFRLPPEDSDLSQARAPATTDLISDDDRSVAADSWSIKSDYGSTLDDDQRHADASEALSAATFPAASDYSSDKEEPDADTVASMLGFQSYWDATYADEMTNFREHGHVGEVWFGADVMEMVVSWTKSLCTNICQGQLANHVDDDKSEPDEKGDKSLVSWSVLDIGTGNGVLLQELAKQGFSDLTGTDFSDGAIDLARSLADRDGFTNIKFLVDDVLETKLERKFRLVMDKGTLDAIGLHPDGTIKRIMYWYSVSKLVAPGGILVITSCNSTKDELVQEVTNFNQRGVVAPQEPETPGNQEAGRDPPPFRFLDHVRSYPTFMFGGSVGSRVATVAFLRN 340
[Close]
BLAST of XM_017387638.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DK25 (Protein-lysine N-methyltransferase Acr_00g0048490 {ECO:0000256|HAMAP-Rule:MF_03188} (2.1.1.- {ECO:0000256|HAMAP-Rule:MF_03188}))

HSP 1 Score: 556.599 bits (1433), Expect = 0.000e+0
Identity = 265/340 (77.94%), Postives = 294/340 (86.47%), Query Frame = 0
 
Query:    1 MAGIRLPPEDSDVSTARPPTNTDLISDDDRSVAADSWSIKSDYGSTLDDDQRHADASEVLSAVPYRSASDYSSDKEEPDAEPVSSMLGFQSYWDAAYADELANFREHGHTGEVWFGADVMEMVASWTKGLCNDIAQGQMLNHVADDTSVTPEQGEKDLTDWSVLDVGTGNGLLLQEFAKQGFTDLTGTDYSEGAIDLARSLADRDGFSGLKFLVDDVLDTKIERKFQLVIDKGTLDAIGLHPDGPIKRIMYWDSISKLVATGGLLVITSCNSTKDELVQEVDNYNHRRVAASQESETSVSQEAGSNSPLFSYLDHIRSYPTFMFGGSVGSRVATVAFVRK 340
            MA IRL PEDSD   AR  T  DLISDDDRSVAADSWSIKSDYGSTLDDDQRHADA++ LS   +R+ASDYSSDKEEPDAE V+SMLGFQSYWDA YADELANFREHGH GEVWFGADVME +ASWTK LC D +QG ++N   D  + T EQ +KDL+ WSVLD+GTGNGLLLQE AKQGF DLTGTDYSEGAIDLAR+L+DRDGF+ +KFLVDD+LDTK+ERK++LV+DKGTLDAIGLHPDGPIKRIMYW+S+S+LVA GG+LVITSCNSTKDELVQEVDN N RR  ASQE+ T V QEAG N P F YLDH+RSYPTFMFGGSVGSRVATVAF+R 
Sbjct:    1 MAAIRLLPEDSDAGQARALTAADLISDDDRSVAADSWSIKSDYGSTLDDDQRHADAADALSVATFRAASDYSSDKEEPDAEAVTSMLGFQSYWDATYADELANFREHGHAGEVWFGADVMETIASWTKSLCTDNSQGHLVNQALDSKAGTIEQSDKDLSSWSVLDIGTGNGLLLQELAKQGFCDLTGTDYSEGAIDLARNLSDRDGFTNIKFLVDDILDTKLERKYKLVVDKGTLDAIGLHPDGPIKRIMYWNSVSRLVAPGGILVITSCNSTKDELVQEVDNLNQRRDGASQEAGTLVDQEAGRNPPSFCYLDHVRSYPTFMFGGSVGSRVATVAFLRN 340
[Close]
BLAST of XM_017387638.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7I879 (Protein-lysine N-methyltransferase HYC85_002254 {ECO:0000256|HAMAP-Rule:MF_03188} (2.1.1.- {ECO:0000256|HAMAP-Rule:MF_03188}))

HSP 1 Score: 550.051 bits (1416), Expect = 0.000e+0
Identity = 268/355 (75.49%), Postives = 295/355 (83.10%), Query Frame = 0
 
Query:    1 MAGIRLPPEDSDVSTARPPTNTDLISDDDRSVAADSWSIKSDYGSTLDDDQRHADASEVLSAVPYRSASDY---------------SSDKEEPDAEPVSSMLGFQSYWDAAYADELANFREHGHTGEVWFGADVMEMVASWTKGLCNDIAQGQMLNHVADDTSVTPEQGEKDLTDWSVLDVGTGNGLLLQEFAKQGFTDLTGTDYSEGAIDLARSLADRDGFSGLKFLVDDVLDTKIERKFQLVIDKGTLDAIGLHPDGPIKRIMYWDSISKLVATGGLLVITSCNSTKDELVQEVDNYNHRRVAASQESETSVSQEAGSNSPLFSYLDHIRSYPTFMFGGSVGSRVATVAFVRK 340
            M GIR PPEDSDVS ARPPT  DLISDDDRSVAADSWSIKSDYGSTLDDDQRHADA+E LSA  +R+ASDY                SDKEEPDAE V+SMLGFQSYWDA YADELANF EHGH GEVWFGADVME VASWTK LC DI+QG +LNH  D+ S   EQ +KDLT WSVLD+GTGNGLLLQE AKQGF+DLTGTDYSEGAIDLARSLADRD  + +KFLVDDVL+TK+ERK+QLV+DKGTLDAIGLHPDGPIKRI+YWDS+S+LV  GG+LV+TSCNSTKDELVQE +N+N RRV ASQE+ T   QEAG + P F YLDH+RSYPTFMFGGS GSRV TVAF+R 
Sbjct:    1 MTGIRSPPEDSDVSQARPPTAADLISDDDRSVAADSWSIKSDYGSTLDDDQRHADAAEALSAGTFRAASDYRIGYELIFELSVLTEGSDKEEPDAEAVTSMLGFQSYWDATYADELANFHEHGHAGEVWFGADVMETVASWTKRLCTDISQGHLLNHADDEKSEPVEQSDKDLTSWSVLDIGTGNGLLLQELAKQGFSDLTGTDYSEGAIDLARSLADRDRVTNIKFLVDDVLETKLERKYQLVMDKGTLDAIGLHPDGPIKRILYWDSVSRLVVPGGILVLTSCNSTKDELVQEAENFNQRRVGASQETGTLGDQEAGRHPPPFRYLDHVRSYPTFMFGGSAGSRVTTVAFLRN 355
[Close]
BLAST of XM_017387638.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834GH32 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7134989.1}))

HSP 1 Score: 549.666 bits (1415), Expect = 0.000e+0
Identity = 261/340 (76.76%), Postives = 296/340 (87.06%), Query Frame = 0
 
Query:    1 MAGIRLPPEDSDVSTARPPTNTDLISDDDRSVAADSWSIKSDYGSTLDDDQRHADASEVLSAVPYRSASDYSSDKEEPDAEPVSSMLGFQSYWDAAYADELANFREHGHTGEVWFGADVMEMVASWTKGLCNDIAQGQMLNHVADDTSVTPEQGEKDLTDWSVLDVGTGNGLLLQEFAKQGFTDLTGTDYSEGAIDLARSLADRDGFSGLKFLVDDVLDTKIERKFQLVIDKGTLDAIGLHPDGPIKRIMYWDSISKLVATGGLLVITSCNSTKDELVQEVDNYNHRRVAASQESETSVSQEAGSNSPLFSYLDHIRSYPTFMFGGSVGSRVATVAFVRK 340
            MAGIRL PEDSDVS AR  T  DLISDDDRSVAADSWSIKSDYGSTLDD+QRHADA+E LSAVP+R+ASDYSSDKEEPDAE V+SMLGFQ+YWD+ YA+ELAN+REHGH GEVWFGADVME VASWTK LC D +QG ++NHV ++      + +KD + WSVLD+GTGNGL LQE AKQGF+DLTGTDYSEGAIDLARSL+DR GF+ +KFLVDDVL+TK+ERK+QLV+DKGTLDAIGLHPDG IKRIMYWDS+S+LVA+GG+LVITSCNSTKDELVQEVD YN RR+ ASQE+ T   Q    +SP F YLDH+RSYPTFMFGGSVGSRVATVAF+R 
Sbjct:    1 MAGIRLAPEDSDVSHARALTTADLISDDDRSVAADSWSIKSDYGSTLDDEQRHADAAEALSAVPHRAASDYSSDKEEPDAEAVTSMLGFQNYWDSTYANELANYREHGHAGEVWFGADVMETVASWTKSLCTDNSQGHLVNHVGNEICGLVGESDKDFSTWSVLDIGTGNGLFLQELAKQGFSDLTGTDYSEGAIDLARSLSDRGGFTYIKFLVDDVLETKLERKYQLVMDKGTLDAIGLHPDGSIKRIMYWDSVSRLVASGGILVITSCNSTKDELVQEVDYYNRRRIGASQEAVTREDQTTNGDSPPFHYLDHVRSYPTFMFGGSVGSRVATVAFLRN 340
[Close]
BLAST of XM_017387638.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6T8G9 (Protein-lysine N-methyltransferase LOC113698890 {ECO:0000256|HAMAP-Rule:MF_03188} (2.1.1.- {ECO:0000256|HAMAP-Rule:MF_03188}))

HSP 1 Score: 544.658 bits (1402), Expect = 0.000e+0
Identity = 261/340 (76.76%), Postives = 290/340 (85.29%), Query Frame = 0
 
Query:    1 MAGIRLPPEDSDVSTARPPTNTDLISDDDRSVAADSWSIKSDYGSTLDDDQRHADASEVLSAVPYRSASDYSSDKEEPDAEPVSSMLGFQSYWDAAYADELANFREHGHTGEVWFGADVMEMVASWTKGLCNDIAQGQMLNHVADDTSVTPEQGEKDLTDWSVLDVGTGNGLLLQEFAKQGFTDLTGTDYSEGAIDLARSLADRDGFSGLKFLVDDVLDTKIERKFQLVIDKGTLDAIGLHPDGPIKRIMYWDSISKLVATGGLLVITSCNSTKDELVQEVDNYNHRRVAASQESETSVSQEAGSNSPLFSYLDHIRSYPTFMFGGSVGSRVATVAFVRK 340
            MAGIRL PED D S ARPP ++DLISDDDRSVAADSWSIKSDYGSTLDD+QRHADASE LS   +R+ASDYSSDKEEPDAE V SMLGFQSYWDA YADEL NFREHGH GEVWFGADVME+VASWTK LC + +QG + NHV D    +  Q EK+  +WSVLD+GTGNGLLLQE AKQGF+DLTGTDYSEGAIDLARSLA RDGF+ +KFLVDD+L+TK++RKFQL++DKGTLDAIGLHPDGP+KRIMYWDS+S LVA GGLLVITSCNSTKDELVQEVD +N RR + SQE   S  QE   + PLF Y+DH+RSYPTFMFGGSVGSRVATVAF R 
Sbjct:    1 MAGIRLQPEDPDASQARPPASSDLISDDDRSVAADSWSIKSDYGSTLDDEQRHADASEALSVANFRAASDYSSDKEEPDAEAVQSMLGFQSYWDAQYADELTNFREHGHAGEVWFGADVMEVVASWTKSLCGEFSQGHLSNHVDDSNCESVGQLEKEPFNWSVLDIGTGNGLLLQELAKQGFSDLTGTDYSEGAIDLARSLAHRDGFTNIKFLVDDILETKLDRKFQLLVDKGTLDAIGLHPDGPVKRIMYWDSVSSLVAPGGLLVITSCNSTKDELVQEVDAFNQRRNSPSQELGASGDQEVNRDPPLFRYVDHVRSYPTFMFGGSVGSRVATVAFQRN 340
Match NameStatsDescription
A0A5B7AVM1E-Value: 0.000e+0, PID: 81.18Protein-lysine N-methyltransferase Din_030198 {ECO... [more]
A0A5B7AXT8E-Value: 0.000e+0, PID: 80.59Protein-lysine N-methyltransferase Din_030197 {ECO... [more]
A0A5B7AXC9E-Value: 0.000e+0, PID: 80.00Protein-lysine N-methyltransferase Din_030196 {ECO... [more]
A0A5J5C1F6E-Value: 0.000e+0, PID: 80.24Protein-lysine N-methyltransferase F0562_004186 {E... [more]
A0A2R6RYG4E-Value: 0.000e+0, PID: 78.99Protein-lysine N-methyltransferase CEY00_Acc02226 ... [more]
A0A5J5AKA9E-Value: 0.000e+0, PID: 78.53Protein-lysine N-methyltransferase F0562_005447 {E... [more]
A0A7J0DK25E-Value: 0.000e+0, PID: 77.94Protein-lysine N-methyltransferase Acr_00g0048490 ... [more]
A0A7J7I879E-Value: 0.000e+0, PID: 75.49Protein-lysine N-methyltransferase HYC85_002254 {E... [more]
A0A834GH32E-Value: 0.000e+0, PID: 76.76(Uncharacterized protein {ECO:0000313|EMBL:KAF7134... [more]
A0A6P6T8G9E-Value: 0.000e+0, PID: 76.76Protein-lysine N-methyltransferase LOC113698890 {E... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.