Resource Type:
Polypeptide
Name:
XM_017387124.1
Identifier:
XM_017387124.1-protein
Sequence:
MWNLNDSPSHERDEEESEEGCSSPFDGDGPEFDKGKRVGSMSNSSSSAVV
IEDGSEEEDGSRRKRSSSKIFGFSVNNDNSPELEPPVITRQFFPVDESVE
TMGIASEASATSTFPRSHWVGVKFGQTEPPRTAGVAGKSTEVPQPLKKSR
RGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDR
AAIKFRGVEADINFVLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSS
KYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNG
KEAVTNFDPSIYEIELHPTETSSNQRDHNLDLSLGSTGSKQKELGDDHSH
NQQGRDQQSASMGYPMNSWQNRGIRPMLSLQQQESGRNQLESQRRDGYNE
METLQLLSQTHLQSPGSARPQDMHSAYWNNYTKVSEVQQGVHMFPTQHNS
NYQMQFSSSSSIGGQSSASDYHNQWRSSGPQVFASAAASSGFPPQQIVRS
DPNWLHTNGFHSYMRPP
Sequence Length:
517
Sequence Checksum:
7ef1247bc82bdc688e280f981ecce580
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017387124.1, derives from mRNA, XM_017387124.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017387124.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017387124.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438FKK4 ((Floral homeotic protein APETALA 2 {ECO:0000313|EMBL:RVW60529.1}))
HSP 1 Score: 590.112 bits (1520), Expect = 0.000e+0
Identity = 355/529 (67.11%), Postives = 404/529 (76.37%), Query Frame = 0
Match: A0A438FKK4 ((Floral homeotic protein APETALA 2 {ECO:0000313|EMBL:RVW60529.1}))
HSP 1 Score: 590.112 bits (1520), Expect = 0.000e+0
Identity = 355/529 (67.11%), Postives = 404/529 (76.37%), Query Frame = 0
Query: 1 MWNLNDSPSHERDEEESEEGCSSPFDGDGPEFDKGKRVGSMSNSSSS--AVVIEDGSEEEDGSRRKRS-SSKIFGFSVNNDNSPELEPPVITRQFFPVDESVETMGIASEASATSTFPRSHWVGVKFGQTEPPRTAGVA-GKSTEVPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFVLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEIELHPTETSSNQRDHNLDLSLGSTGSKQK--ELGDDHSHNQQGRDQQSASMGYPMNSWQNRGIRPMLSLQQQESGRNQLESQRRDGYNEMETLQLLSQTHLQSPGSARPQDMHSAYWNNYTKVSEVQQGVHMFPTQHNS-NYQMQFSSSSS------IGGQSSASDYHNQWRSSGPQVFASAAASSGFPPQQIVRSDPNWLHTNGFHSYMRP 516
MW+LNDSP RD+E EGCSS DKGKRVGS+SN +SS AVVIEDGS+EEDG R +R SSKIFGFSV +++ E EPPV TRQFFP++ES MG S A + FPR+HWVGVKF Q+EP TAGVA KS E QPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINF LEDYEEDLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYE EL+ +S N DHNLDLSLG + SKQ ELGDD DQ S M + + W++RG RP +L QQE+ ++ ++ RR+GYNEMET+QLLS THLQSP + +P +M+ + + + E Q +H+ P Q +S NYQ+QF SSS+ GG S + H QW+S PQ+FA+AAASSGFPP Q++R + W NGFHS +RP
Sbjct: 1 MWDLNDSPDQRRDDES--EGCSSQKTSVDSIDDKGKRVGSVSNENSSSSAVVIEDGSDEEDGERGQRKRSSKIFGFSVTHED--EGEPPV-TRQFFPMEES--EMGTTSCGGAAA-FPRAHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELN---SSGNAADHNLDLSLGGSASKQNNLELGDDSQVVTM--DQHSVGMSFEAD-WRSRGFRPKFNL-QQEACKSDGDALRRNGYNEMETMQLLSHTHLQSPAALKPGEMYR--YGQFRRAGETQM-LHILPPQLSSPNYQIQFPSSSNGGRIAVNGGDLSLATNHQQWQSGPPQLFATAAASSGFPP-QMIRPNQQWPQKNGFHSLIRP 510
BLAST of XM_017387124.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: C1KBJ2 ((AP2 {ECO:0000313|EMBL:QOE83970.1}) (Transcription factor APETALA2 {ECO:0000313|EMBL:ACO52508.1}))
HSP 1 Score: 590.112 bits (1520), Expect = 0.000e+0
Identity = 355/529 (67.11%), Postives = 404/529 (76.37%), Query Frame = 0
Match: C1KBJ2 ((AP2 {ECO:0000313|EMBL:QOE83970.1}) (Transcription factor APETALA2 {ECO:0000313|EMBL:ACO52508.1}))
HSP 1 Score: 590.112 bits (1520), Expect = 0.000e+0
Identity = 355/529 (67.11%), Postives = 404/529 (76.37%), Query Frame = 0
Query: 1 MWNLNDSPSHERDEEESEEGCSSPFDGDGPEFDKGKRVGSMSNSSSS--AVVIEDGSEEEDGSRRKRS-SSKIFGFSVNNDNSPELEPPVITRQFFPVDESVETMGIASEASATSTFPRSHWVGVKFGQTEPPRTAGVA-GKSTEVPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFVLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEIELHPTETSSNQRDHNLDLSLGSTGSKQK--ELGDDHSHNQQGRDQQSASMGYPMNSWQNRGIRPMLSLQQQESGRNQLESQRRDGYNEMETLQLLSQTHLQSPGSARPQDMHSAYWNNYTKVSEVQQGVHMFPTQHNS-NYQMQFSSSSS------IGGQSSASDYHNQWRSSGPQVFASAAASSGFPPQQIVRSDPNWLHTNGFHSYMRP 516
MW+LNDSP RD+E EGCSS DKGKRVGS+SN +SS AVVIEDGS+EEDG R +R SSKIFGFSV +++ E EPPV TRQFFP++ES MG S A + FPR+HWVGVKF Q+EP TAGVA KS E QPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINF LEDYEEDLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYE EL+ +S N DHNLDLSLG + SKQ ELGDD DQ S M + + W++RG RP +L QQE+ ++ ++ RR+GYNEMET+QLLS THLQSP + +P +M+ + + + E Q +H+ P Q +S NYQ+QF SSS+ GG S + H QW+S PQ+FA+AAASSGFPP Q++R + W NGFHS +RP
Sbjct: 1 MWDLNDSPDQRRDDES--EGCSSQKTSVDSIDDKGKRVGSVSNENSSSSAVVIEDGSDEEDGERGQRKRSSKIFGFSVTHED--EGEPPV-TRQFFPMEES--EMGTTSCGGAAA-FPRAHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELN---SSGNAADHNLDLSLGGSASKQNNLELGDDSQVVTM--DQHSVGMSFEAD-WRSRGFRPKFNL-QQEACKSDGDALRRNGYNEMETMQLLSHTHLQSPAALKPGEMYR--YGQFRRAGETQM-LHILPPQLSSPNYQIQFPSSSNGGRIAVNGGDLSLATNHQQWQSGPPQLFATAAASSGFPP-QMIRPNQQWPQKNGFHSLIRP 510
BLAST of XM_017387124.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6H4H7 ((Uncharacterized protein {ECO:0000313|EMBL:CCB47049.1}))
HSP 1 Score: 584.719 bits (1506), Expect = 0.000e+0
Identity = 353/529 (66.73%), Postives = 402/529 (75.99%), Query Frame = 0
Match: F6H4H7 ((Uncharacterized protein {ECO:0000313|EMBL:CCB47049.1}))
HSP 1 Score: 584.719 bits (1506), Expect = 0.000e+0
Identity = 353/529 (66.73%), Postives = 402/529 (75.99%), Query Frame = 0
Query: 1 MWNLNDSPSHERDEEESEEGCSSPFDGDGPEFDKGKRVGSMSNSSSS--AVVIEDGSEEEDGSRRKRS-SSKIFGFSVNNDNSPELEPPVITRQFFPVDESVETMGIASEASATSTFPRSHWVGVKFGQTEPPRTAGVA-GKSTEVPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFVLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEIELHPTETSSNQRDHNLDLSLGSTGSKQK--ELGDDHSHNQQGRDQQSASMGYPMNSWQNRGIRPMLSLQQQESGRNQLESQRRDGYNEMETLQLLSQTHLQSPGSARPQDMHSAYWNNYTKVSEVQQGVHMFPTQHNS-NYQMQFSSSSS------IGGQSSASDYHNQWRSSGPQVFASAAASSGFPPQQIVRSDPNWLHTNGFHSYMRP 516
MW+LNDSP RD+E EGCSS DKGKRVGS+SN +SS AVVIEDGS+EEDG R +R SSKIFGFSV +++ E EPPV TRQFFP++ES MG S A + FPR+HWVGVKF Q+EP TAGVA KS E QPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINF LEDYEEDLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYE EL+ +S N DHNLDLSLG + SKQ ELGDD DQ S M + + W++RG RP +QE+ ++ ++ RR+GYNEMET+QLLS THLQSP + +P +M+ + + + E Q +H+ P Q +S NYQ+QF SSS+ GG S + H QW+S PQ+FA+AAASSGFPP Q++R + W NGFHS +RP
Sbjct: 1 MWDLNDSPDQRRDDES--EGCSSQKTSVDSIDDKGKRVGSVSNENSSSSAVVIEDGSDEEDGERGQRKRSSKIFGFSVTHED--EGEPPV-TRQFFPMEES--EMGTTSCGGAAA-FPRAHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELN---SSGNAADHNLDLSLGGSASKQNNLELGDDSQVVTM--DQHSVGMSFEAD-WRSRGFRP-----KQEACKSDGDALRRNGYNEMETMQLLSHTHLQSPAALKPGEMYR--YGQFRRAGETQM-LHILPPQLSSPNYQIQFPSSSNGGRIAVNGGDLSLATNHQQWQSGPPQLFATAAASSGFPP-QMIRPNQQWPQKNGFHSLIRP 506
BLAST of XM_017387124.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9UVB7 ((Uncharacterized protein {ECO:0000313|EMBL:OAY35492.1}))
HSP 1 Score: 560.836 bits (1444), Expect = 0.000e+0
Identity = 343/533 (64.35%), Postives = 389/533 (72.98%), Query Frame = 0
Match: A0A2C9UVB7 ((Uncharacterized protein {ECO:0000313|EMBL:OAY35492.1}))
HSP 1 Score: 560.836 bits (1444), Expect = 0.000e+0
Identity = 343/533 (64.35%), Postives = 389/533 (72.98%), Query Frame = 0
Query: 1 MWNLNDSPSHERDEEESEEGCSSPFDGDGPEFDKGKRVGSMSNSSSSAVVIEDGSEEEDGS----RRKRSSSKIFGFSVNNDNSPELEPPVITRQFFPVDESVETMGIASEASATSTFPRSHWVGVKFGQTEPPRTAGVAGKSTEVPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFVLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEIELHPTETSSNQRDHNLDLSLGSTGSKQKELGDDHSHNQQGRDQQSASMGYPMNSWQNRGIRPMLSLQQQESGRNQLESQRRDGYNEMETLQLLSQTHLQSPGSARPQDMHSAYWNNYTKVSEVQQGVHMFPTQHNSNYQMQFSSSSS---IGGQSSA--SDYHNQW-------RSSGP-QVFASAAASSGFPPQQIVRSDPNWLHTNGFHSYMRP 516
MW+LNDSP RD+E EGCSS E +KGKRVGSMSNSSSSAVVIEDGS+EEDGS R K+ S KIFGFSV DNS P++TRQFFPV++ + FPR+HWVGVKF Q+E + + KS EV QPLKKSRRGPRSRSSQYRGVT+YRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINF +EDYE+DLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYE EL+ +E+S N DHNLDLSLG++GSKQ +G + G DQQSA M + + W+NRGIRP L+L + + + RR+GY E ET+QLLSQTH+QSPG+ + + + E Q H F + NYQMQF SSS+ IG S SDYH+ R P Q+ A+AAASSGFP Q +R+ NWL NGFHS +RP
Sbjct: 1 MWDLNDSPDQTRDDES--EGCSSQKTSLDGEDEKGKRVGSMSNSSSSAVVIEDGSDEEDGSGERGRIKKRSGKIFGFSVTRDNSSMESDPLVTRQFFPVEDQEMGATSGGGGGVGAGFPRAHWVGVKFCQSE----SLASPKSAEVSQPLKKSRRGPRSRSSQYRGVTYYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSSESSGNAADHNLDLSLGNSGSKQNSVGFSNDRQNAGMDQQSAPMAFEAD-WRNRGIRPKLNLSRSDDS----DDHRREGYCETETMQLLSQTHIQSPGN------EGQRYGQFKRPGENQM-FHGF----SPNYQMQFPSSSNGGRIGSDLSLSPSDYHHHHQQRQWQSRPPPPHQLVANAAASSGFPQQ--IRTPQNWLQKNGFHSILRP 509
BLAST of XM_017387124.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PAC1 ((Floral homeotic protein like {ECO:0000313|EMBL:PSR87964.1}))
HSP 1 Score: 557.37 bits (1435), Expect = 0.000e+0
Identity = 332/532 (62.41%), Postives = 379/532 (71.24%), Query Frame = 0
Match: A0A2R6PAC1 ((Floral homeotic protein like {ECO:0000313|EMBL:PSR87964.1}))
HSP 1 Score: 557.37 bits (1435), Expect = 0.000e+0
Identity = 332/532 (62.41%), Postives = 379/532 (71.24%), Query Frame = 0
Query: 1 MWNLNDSPSHERDEEESEEGCSSPFDGDGPEFDKGKRVGSMSNSSSSAVVIEDGSEEEDGSRRKRSSSKIFGFSV---NNDNSPELEPPVITRQFFPVDESVETMGIASEASATSTFPRSHWVGVKFGQTEPPRTAGVAGKSTEVPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFVLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEIELHPTETSSNQRDHNLDLSLGSTGSKQK--ELGDDHSHNQQGRDQQSASMGYPMNSWQNRGIRPMLSLQQQESGRNQLESQRRDGYNEMETLQLLSQTHL-QSPGSA-RPQDMHSAYWNNYTKVSEVQQGVHMFPTQHNSNYQMQFSSSSSIGG---QSSASDYHNQWRSS--GP---QVFASAAASSGFPPQQIVRSDP-NWLHTNGFHSYMRP 516
MW+LNDSP ++ESE CS D DKGKRVGS+SNSSSSAV ++EDG RKRS SKIFGFSV ++ S E +PPV T QFFP + + FPR+HWVGV+F Q+E P A AGK TE QPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAH+AARAYDRAAIKFRGVEADINF LEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYE EL+ TE S DHNLDLSLGS+ SKQK ++ DD H SM + W+NR +P ++ QQ++ + S RRDGYNE +T+QLLSQTH+ Q+P S+ +P +M + + +HMFP +YQ+Q SSS+ G S ++ H W+ + P QVFASAAASSGFP Q+I+ + P NWL NGFH MRP
Sbjct: 1 MWDLNDSPDPTTRDDESEV-CSYGDD------DKGKRVGSVSNSSSSAV------DDEDGGGRKRSGSKIFGFSVTRPDDSFSSESDPPV-THQFFPASDG---------GGGAANFPRAHWVGVRFCQSEAPVAA--AGKFTETTQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVEADINFTLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEDELNSTECSGKPSDHNLDLSLGSSASKQKSHDIADDQRH---------TSMPIEVTDWRNREFQPKINFQQEQF----IRSDRRDGYNETDTMQLLSQTHINQTPTSSFKPNEMQ--------RYGKFAHELHMFP----PHYQVQCPSSSTNGNGGKLSLSTSEHQNWQLNIVNPPPGQVFASAAASSGFPQQKIITTAPQNWLQQNGFHFSMRP 482
BLAST of XM_017387124.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZKX6 ((Putative transcription factor APETALA2 isoform X1 {ECO:0000313|EMBL:MPA44664.1}))
HSP 1 Score: 557.37 bits (1435), Expect = 0.000e+0
Identity = 357/530 (67.36%), Postives = 408/530 (76.98%), Query Frame = 0
Match: A0A5B6ZKX6 ((Putative transcription factor APETALA2 isoform X1 {ECO:0000313|EMBL:MPA44664.1}))
HSP 1 Score: 557.37 bits (1435), Expect = 0.000e+0
Identity = 357/530 (67.36%), Postives = 408/530 (76.98%), Query Frame = 0
Query: 1 MWNLNDSPSHERDEEESEEGCSSPFDGDGPEFDKGKRVGSMSNSSSSAVVIEDGSEEEDGSR--RKRSSSKIFGFSVNNDNSPELEPPVITRQFFPVDES-VETMGIASEASATSTFPRSHWVGVKFGQTEPPRTAGVAGKSTEVPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFVLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEIELHPTETSSNQRDHNLDLSLGSTG---SKQKELGDDHSHNQQGRDQQSASMGYPMNSWQNRGIRPMLSLQQQESGRNQLESQRRDGYNEMETLQLLSQTHLQSPGSARPQDMHSAYWNNYTKVSEVQQGVHMFPTQ-HNSNYQMQFSSSS------SIGGQSSASDYHNQWRSSGP-QVFASAAASSGFPPQQIVRSDPNWLHTNGFHSYMRP 516
MWNLNDSP R ++ESE GCSSP DG E+DKGKRVGS+SNSSSSAVVIE+GSE+EDG R RKR SSKIFGFSV ++ S E EPPV TRQFFP++ S + T + FPR+HWVGVKF Q+EP AG S+EV QPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINF LE+YEEDLK+MSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGK+AVTNFDPSIYE EL TE N NLDLSLGST +ELG + + DQ+SASM + ++ W+N+G RP ++E+ RN+++++RRDG+NE ET+QLLSQTHLQSP S + +MH + + K E Q +HMFP Q +SN+Q+QF SSS + GG S S QW+S+ P Q+FA+AAASSGF PQQI R +WL NGFH MRP
Sbjct: 1 MWNLNDSPDQRRVDDESE-GCSSPVDG--VEYDKGKRVGSVSNSSSSAVVIEEGSEDEDGERGRRKRMSSKIFGFSVTDNCSSESEPPV-TRQFFPLEYSEMGTTPGGGGGCGATNFPRAHWVGVKFCQSEP--LAGGVANSSEVSQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEEYEEDLKKMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPSIYENELDSTECPGNAAGQNLDLSLGSTSVLKQNSRELGGEIQN--PAMDQRSASMPFEVD-WRNQGFRP-----KKETQRNEIDARRRDGFNETETMQLLSQTHLQSPSSLKANEMHR--YGQFVKAGEPQM-LHMFPAQLSSSNFQIQFPSSSNGGRLGANGGDLSLSTSDQQWQSNPPHQLFATAAASSGF-PQQINRPQ-HWLQ-NGFHYLMRP 510
BLAST of XM_017387124.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BZ25 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8547120.1}))
HSP 1 Score: 553.518 bits (1425), Expect = 0.000e+0
Identity = 361/538 (67.10%), Postives = 408/538 (75.84%), Query Frame = 0
Match: A0A5J5BZ25 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8547120.1}))
HSP 1 Score: 553.518 bits (1425), Expect = 0.000e+0
Identity = 361/538 (67.10%), Postives = 408/538 (75.84%), Query Frame = 0
Query: 1 MWNLNDSPSHERDEEESEEGCSSPFDGDGPEFD--KGKRVGSMSNSSSSAVVIEDGSEEEDGS--RRKRSSSKIFGFSV--NNDN-SPELEPPVITRQFFPVDESVETMGIASE----ASATSTFPRSHWVGVKFGQTEPPRTAGVAGKSTEVPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFVLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEIELHPT--ETSSNQRDHNLDLSLGSTGSKQ--KELGDDHSHNQQGRDQQSASMGYPMNSWQNRGIRPMLSLQQQESGRNQLESQRRDGYNEMETLQLLSQTHLQSPGSARPQDMHSAYWNNYTKVSEVQQGVHMF-PTQHNSNYQMQFSSSS------SIGGQSSASDYHNQWRSSGPQVFASAAASSGFPPQQIVRSDPNWLHTNGFHSYMRP 516
MW+LNDSP RDEE EGCSSP D E+D KGKRVGS+SNSSSSA+VIE+GSEEEDG RRKRSS KIFGFSV NNDN S E E PV TRQFFPV++S ET G S +T PR+HWVGVKF Q+EP G GKS EV QPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINF LEDYE+DLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGK+AVTNFDPSIYE E+ + + SN D NLDLSLG++ KQ +E+G D + D SASM + ++ W+N+G RP L+L QQE RN++++ RR G++E ET+QLLSQTHLQSP S + +MH + + K E Q HMF P +S++ QF SSS + GG S S QW+S+ PQ+FA+AAASSGF PQQI R +W+ NGFH MRP
Sbjct: 1 MWDLNDSPDQRRDEES--EGCSSPVD----EYDDDKGKRVGSLSNSSSSALVIEEGSEEEDGERGRRKRSS-KIFGFSVTHNNDNCSSESELPV-TRQFFPVEDS-ET-GTKSGGGGGCVGATTLPRAHWVGVKFCQSEP--LGGGVGKSIEVSQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPSIYENEIDSSTADCPSNVADQNLDLSLGNSAMKQNSREMGGDVQN--PAMDLHSASMPFEVD-WRNQGFRPKLNL-QQEPHRNEIDAHRRAGFHETETMQLLSQTHLQSPSSLKANEMHR--YGQFVKAGEPQM-FHMFQPQLSSSSFLTQFPSSSNGGRFGANGGDLSLSTGDQQWQSNPPQLFATAAASSGF-PQQINRPQ-HWMQKNGFHYVMRP 517
BLAST of XM_017387124.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZM57 ((Putative transcription factor APETALA2 isoform X1 {ECO:0000313|EMBL:MPA44671.1}))
HSP 1 Score: 548.895 bits (1413), Expect = 0.000e+0
Identity = 361/537 (67.23%), Postives = 407/537 (75.79%), Query Frame = 0
Match: A0A5B6ZM57 ((Putative transcription factor APETALA2 isoform X1 {ECO:0000313|EMBL:MPA44671.1}))
HSP 1 Score: 548.895 bits (1413), Expect = 0.000e+0
Identity = 361/537 (67.23%), Postives = 407/537 (75.79%), Query Frame = 0
Query: 1 MWNLNDSPSHERDEEESEEGCSSPFDGDGPEFDKGKRVGSMSNSSSSAVVIEDGSEEED---GSRRKRSSSKIFGFSV--NNDN-SPELEPPVITRQFFPVDESVETMGIASE----ASATSTFPRSHWVGVKFGQTEPPRTAGVAGKSTEVPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFVLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEIELHPTETSSNQRDHNLDLSLGSTG---SKQKELGDDHSHNQQGRDQQSASMGYPMNSWQNRGIRPMLSLQQQESGRNQLESQRRDGYNEMETLQLLSQTHLQSPGSARPQDMHSAYWNNYTKVSEVQQGVHMFPTQ-HNSNYQMQFSSSS------SIGGQSSASDYHNQWRSSGP-QVFASAAASSGFPPQQIVRSDPNWLHTNGFHSYMRP 516
MW+LNDSP RD+E EGCSSP DG +GKRVGS+SNSSSSAVVIE+GS+EED GSRRKRSS IFGFSV N+DN S E EPPV TRQFFPV++S G S + PR+HWVGVKF Q+EP G GKSTEV QPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINF LEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGK+AVTNFDPSIYE EL TE N NLDLSLGST +ELG + + DQ+SASM + ++ W+N+G RP ++E+ RN+++++RRDG+NE ET+QLLSQTHLQSP S + +MH + + K E Q +HMFP Q +SN+Q+QF SSS + GG S S QW+S+ P Q+FA+AAASSGF PQQI R +WL NGFH MRP
Sbjct: 1 MWDLNDSPDQRRDDES--EGCSSPVDGV-----EGKRVGSVSNSSSSAVVIEEGSDEEDGERGSRRKRSS-MIFGFSVTHNDDNCSSESEPPV-TRQFFPVEDS--EAGTKSGGGGGCVGATNLPRAHWVGVKFCQSEPRGGGGGVGKSTEVSQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPSIYENELDSTECPGNAAGQNLDLSLGSTSVLKQNSRELGGEIQN--PAMDQRSASMPFEVD-WRNQGFRP-----KKETQRNEIDARRRDGFNETETMQLLSQTHLQSPSSLKANEMHR--YGQFVKAGEPQM-LHMFPAQLSSSNFQIQFPSSSNGGRLGANGGDLSLSTSDQQWQSNPPHQLFATAAASSGF-PQQINRPQ-HWLQ-NGFHYLMRP 512
BLAST of XM_017387124.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A6K6D9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF2283748.1}))
HSP 1 Score: 542.347 bits (1396), Expect = 0.000e+0
Identity = 347/545 (63.67%), Postives = 395/545 (72.48%), Query Frame = 0
Match: A0A6A6K6D9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF2283748.1}))
HSP 1 Score: 542.347 bits (1396), Expect = 0.000e+0
Identity = 347/545 (63.67%), Postives = 395/545 (72.48%), Query Frame = 0
Query: 1 MWNLNDSPSHERDEEESEEGCSS---PFDGDGPEFDKGKRVGSMSNSSSSAVVIEDGSEEED----GSRRKRSSSKIFGFSVNNDNSPELEPPVITRQFFPVDE--------SVETMGIASEASATSTFPRSHWVGVKFGQTEPPRTAGVAGKSTEVPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFVLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEIELHPTETSSNQRDHNLDLSLGSTGSKQKELGDDHSHNQQGRDQQSASMGYPMNSWQNRGIRPMLSLQQQESGRNQLESQRRDGYNEMETLQLLSQTHLQSPGSARPQDMHSAYWNNYTKVSEVQQGVHMFPTQHNSNYQMQFSSSSS---IGGQSSAS----DYHN--QWRSSGP----QVFASAAASSGFPPQQIVRSDPNWLHTNGFHSYMRPP 517
MW+LNDSP R +E EGCSS DGD +KGKRVGS+SNSSSSAVVIEDGSEEED G R K+ SSKIFGFSV +DNS E +PPV TRQFFPV++ G + FPR+HWVGVKF Q+E + + KS EV QPLKKSRRGPRSRSSQYRGVT+YRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINF +EDYE+DLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYE EL+ +E+S + DHNLDLSLG++GSKQ +G + G DQQSA M + + W+NRGIRP L+L + RR+GY E ET+QLLSQTH+QSPG+ PQ + + + E Q MF +NYQ+QF SSS+ IG S S D+H QW+S P Q+ A+AAASSGFP Q +R+ +WL NG HS +R P
Sbjct: 1 MWDLNDSPDQIRGDES--EGCSSQKTSLDGDD---EKGKRVGSVSNSSSSAVVIEDGSEEEDVSGEGCRIKKRSSKIFGFSVTHDNSMESDPPV-TRQFFPVEDQEMGATSGGSGGGGGGGGGGGGAGFPRAHWVGVKFCQSE----SLASPKSVEVSQPLKKSRRGPRSRSSQYRGVTYYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSSESSGSAADHNLDLSLGNSGSKQNNVGFSNDRQNAGIDQQSAQMPFEAD-WRNRGIRPKLNLYRNSDS----NEHRREGYCETETMQLLSQTHIQSPGN-EPQ-----RYGQFRRPGETQ----MFHDFSPTNYQIQFPSSSNGGRIGSDLSLSPSDYDHHQQRQWQSRPPPPPYQLVANAAASSGFPQQ--IRTPQSWLQKNGLHSILRTP 518
BLAST of XM_017387124.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TKN0 ((floral homeotic protein APETALA 2-like isoform X1 {ECO:0000313|RefSeq:XP_027078592.1}))
HSP 1 Score: 539.65 bits (1389), Expect = 0.000e+0
Identity = 344/542 (63.47%), Postives = 393/542 (72.51%), Query Frame = 0
Match: A0A6P6TKN0 ((floral homeotic protein APETALA 2-like isoform X1 {ECO:0000313|RefSeq:XP_027078592.1}))
HSP 1 Score: 539.65 bits (1389), Expect = 0.000e+0
Identity = 344/542 (63.47%), Postives = 393/542 (72.51%), Query Frame = 0
Query: 1 MWNLNDSPSHERDEEESEEGCSSPFDGDGPEFDKGKRVGSMSNSSSSAVVIEDGSEEED-----GSRRKR--SSSKIFGFSV---NNDN-SPELEPPVITRQFFPVDESVETMGI--------ASEASATSTFPRSHWVGVKFGQTEPPRTAGVAGKSTEVPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFVLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEIELHPTETSSNQRDHNLDLSLGSTGSKQKELGDDHSHNQQGRDQQSASMGYPMNSWQNRGIRPMLSLQQQESGRNQLESQRRDGYNEMETLQLLSQTHLQSPGSARPQDMHSAYWNNYTKVSEVQQGVHMFPTQHN-SNYQMQFSSSSSIG-----GQSSASDYHNQWRSSGPQVFASAAASSGFPPQQIVRSDPNWLHTNGFHSY-MRP 516
MW+LNDSP D+E EGCSSP DGD DKGKRVGS+SNSSSSAVVIEDG +E+ G RKR S+S+IFGF+V N+DN S E + P +TRQFFPVDES +G AS S PR+ WVGVKF Q+EP GV GKSTEV QPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINF L DYE+DLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGK+AVTNFDPSIYE EL+ +E+ DHNLDLSLG++ SK G + + +DQ SASM + ++ W++ G R ++ N +ES RRDGY+E ET+QLLSQTHL SPGS +P+++ + + + + E M P Q N SNY QF SSS+ G G S S W+ + P + +AAASSGF PQQIVR +W NGFH + MRP
Sbjct: 1 MWDLNDSPDQRWDDES--EGCSSPVDGDD---DKGKRVGSVSNSSSSAVVIEDGYSDEEVGELRGGSRKRGTSTSRIFGFAVSAHNDDNCSSESDQPPVTRQFFPVDESDMGVGTSSGGCNEGASSGSGVPDLPRAPWVGVKFCQSEP-LGGGVLGKSTEVSQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLADYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPSIYEDELNSSESGGGAADHNLDLSLGNSASKLSSHGGMAPNVDRSKDQHSASMHFQVD-WRHHGFR------SKQENPNDVESLRRDGYSEAETVQLLSQTHLHSPGSMKPKEIQN--YGQFRRGGESHI-FQMLPPQFNSSNYHFQFPSSSNGGLIGANGDLSLSTSDPHWQYNPPHFYGTAAASSGF-PQQIVRPQ-DWTQKNGFHHHLMRP 524
| Match Name | Stats | Description |
|---|---|---|
| A0A438FKK4 | E-Value: 0.000e+0, PID: 67.11 | (Floral homeotic protein APETALA 2 {ECO:0000313|EM... [more] |
| C1KBJ2 | E-Value: 0.000e+0, PID: 67.11 | (AP2 {ECO:0000313|EMBL:QOE83970.1}) (Transcription... [more] |
| F6H4H7 | E-Value: 0.000e+0, PID: 66.73 | (Uncharacterized protein {ECO:0000313|EMBL:CCB4704... [more] |
| A0A2C9UVB7 | E-Value: 0.000e+0, PID: 64.35 | (Uncharacterized protein {ECO:0000313|EMBL:OAY3549... [more] |
| A0A2R6PAC1 | E-Value: 0.000e+0, PID: 62.41 | (Floral homeotic protein like {ECO:0000313|EMBL:PS... [more] |
| A0A5B6ZKX6 | E-Value: 0.000e+0, PID: 67.36 | (Putative transcription factor APETALA2 isoform X1... [more] |
| A0A5J5BZ25 | E-Value: 0.000e+0, PID: 67.10 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8547... [more] |
| A0A5B6ZM57 | E-Value: 0.000e+0, PID: 67.23 | (Putative transcription factor APETALA2 isoform X1... [more] |
| A0A6A6K6D9 | E-Value: 0.000e+0, PID: 63.67 | (Uncharacterized protein {ECO:0000313|EMBL:KAF2283... [more] |
| A0A6P6TKN0 | E-Value: 0.000e+0, PID: 63.47 | (floral homeotic protein APETALA 2-like isoform X1... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |