Resource Type:
Polypeptide
Name:
XM_017387098.1
Identifier:
XM_017387098.1-protein
Sequence:
MTIGSLKPAKEKRSRKNKQLIADEKVPLLPTKQVEDGGFDEFNGASYTGA
VFNLSTTIVGAGIMSLPATMKVLGLAPGIAMIVFMAFLTDASIEMLLRFS
RAGKNTSYGGVMNDAFGKYGRMLLQVCVLVNNIGVLVVYMIIIGDVLSGT
TSSGIHHAGVLEGWFGVQWWNGRTIVLLVTTLGIFAPLASLKRIDSLRYT
SALSVALAVVFLVVTAGITVYKLISGGIMMPRLLPEATDLTSVLKLFTAV
PVLVTAYICHYNVHTIENELEDRKQIRGVVRSSLALCSSVYVMISLFGFL
LFGDATLDDVLANFDTNLGVPFSSLLSDVVRVSYAAHLMLVFPIVFFPLR
LNLDGLLFPSARPLVLSNVRFAVISIGLIGLIFLGANFIPSIWDAFQFTG
ATAAVCIGFIFPAAVTLGDHHGIATKKDKILCIFMIVLAVFSNVVAIYSD
AYALFKKNGTPQ
Sequence Length:
462
Sequence Checksum:
3e2981c38f79fabe6d35190058f65437
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017387098.1, derives from mRNA, XM_017387098.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017387098.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017387098.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C2V1 (Aa_trans domain-containing protein {ECO:0000259|Pfam:PF01490})
HSP 1 Score: 793.882 bits (2049), Expect = 0.000e+0
Identity = 387/462 (83.77%), Postives = 422/462 (91.34%), Query Frame = 0
Match: A0A5J5C2V1 (Aa_trans domain-containing protein {ECO:0000259|Pfam:PF01490})
HSP 1 Score: 793.882 bits (2049), Expect = 0.000e+0
Identity = 387/462 (83.77%), Postives = 422/462 (91.34%), Query Frame = 0
Query: 1 MTIGSLKPAKEKRSRKNKQLIADEKVPLLPTKQVEDGGFDEFNGASYTGAVFNLSTTIVGAGIMSLPATMKVLGLAPGIAMIVFMAFLTDASIEMLLRFSRAGKNTSYGGVMNDAFGKYGRMLLQVCVLVNNIGVLVVYMIIIGDVLSGTTSSGIHHAGVLEGWFGVQWWNGRTIVLLVTTLGIFAPLASLKRIDSLRYTSALSVALAVVFLVVTAGITVYKLISGGIMMPRLLPEATDLTSVLKLFTAVPVLVTAYICHYNVHTIENELEDRKQIRGVVRSSLALCSSVYVMISLFGFLLFGDATLDDVLANFDTNLGVPFSSLLSDVVRVSYAAHLMLVFPIVFFPLRLNLDGLLFPSARPLVLSNVRFAVISIGLIGLIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAVTLGDHHGIATKKDKILCIFMIVLAVFSNVVAIYSDAYALFKKNGTPQ 462
MTIGSLKPAKEK+SR++KQ+I DEKVPLLPTKQ ED GFDEFNGAS+TGAVFNLSTTIVGAGIM+LPATMKVLGL GIAMI+FMAFL +ASIEMLLRFSRAGK SY GVM DAFGKYGRMLLQVCVLVNNIGVL+VYMII+GDVLSGTTSSGIHHAGVLEGWFG WWNGR VLLV TL +FAPLA LKRIDSLR+TSALSVALAVVFLV+T GIT KLI+G I+MPRLLP+ TDL S KLFT VP+LVTAYICHYNVH+I+NELED QI+ VVR+SLALCS+VYVM SLFGFLLFGDATLDDVLANFDT+LG+P+SSLL+D VRVSYAAHLMLVFPIVF+PLRLNLDGLLFPSARPL N+RF + SIGLI +IFLGANFIPSIWDAFQFTGATAAVCIGFIFPAA+TLG+ HGIATKKDKILCIFMI LAVFSN+VAIYSDAYALFKKN +P+
Sbjct: 1 MTIGSLKPAKEKKSRRSKQII-DEKVPLLPTKQEEDVGFDEFNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLGLGIAMIIFMAFLAEASIEMLLRFSRAGKTVSYAGVMGDAFGKYGRMLLQVCVLVNNIGVLIVYMIILGDVLSGTTSSGIHHAGVLEGWFGEHWWNGRAFVLLVITLAVFAPLACLKRIDSLRFTSALSVALAVVFLVITVGITSVKLINGSILMPRLLPDVTDLASFWKLFTVVPILVTAYICHYNVHSIDNELEDATQIKAVVRTSLALCSTVYVMTSLFGFLLFGDATLDDVLANFDTDLGIPYSSLLNDAVRVSYAAHLMLVFPIVFYPLRLNLDGLLFPSARPLTSDNLRFGLTSIGLISVIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAITLGNRHGIATKKDKILCIFMIALAVFSNLVAIYSDAYALFKKNASPR 461
BLAST of XM_017387098.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LDH9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7134841.1}))
HSP 1 Score: 791.571 bits (2043), Expect = 0.000e+0
Identity = 385/462 (83.33%), Postives = 424/462 (91.77%), Query Frame = 0
Match: A0A834LDH9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7134841.1}))
HSP 1 Score: 791.571 bits (2043), Expect = 0.000e+0
Identity = 385/462 (83.33%), Postives = 424/462 (91.77%), Query Frame = 0
Query: 1 MTIGSLKPAKEKRSRKNKQLIADEKVPLLPTKQVEDGGFDEFNGASYTGAVFNLSTTIVGAGIMSLPATMKVLGLAPGIAMIVFMAFLTDASIEMLLRFSRAGKNTSYGGVMNDAFGKYGRMLLQVCVLVNNIGVLVVYMIIIGDVLSGTTSSGIHHAGVLEGWFGVQWWNGRTIVLLVTTLGIFAPLASLKRIDSLRYTSALSVALAVVFLVVTAGITVYKLISGGIMMPRLLPEATDLTSVLKLFTAVPVLVTAYICHYNVHTIENELEDRKQIRGVVRSSLALCSSVYVMISLFGFLLFGDATLDDVLANFDTNLGVPFSSLLSDVVRVSYAAHLMLVFPIVFFPLRLNLDGLLFPSARPLVLSNVRFAVISIGLIGLIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAVTLGDHHGIATKKDKILCIFMIVLAVFSNVVAIYSDAYALFKKNGTPQ 462
MTIGSLKP KEK+SRK+KQ++ DEKVPLLPTKQ ED GFDEF+GAS+TGAVFNLSTTIVGAGIM+LPATMKVLGL GIAMI+FMAFLT+ASIEMLLRFSR GK++SYGGVM DA+GK+GRM LQ+CVLVNN+GVL+VYMIIIGDVLSGTTSSGIHHAGVLEGWFGV WWN RT VLLVTTL +FAPLA LKRIDSL++TSALSVALAVVFLV+T GITV KLI+G I MPRLLP+ TD+TS L LFT VPVLVTAYICHYNVH+I+NELED +I+ VVRSSLALCSSVYVM SLFGFLLFGDATLDDVLANFD +LG+P+ SLL+DVVRVSYAAHLMLVFPIVF+PLRLN+DGLLFP+ARPL N+RFA+IS GLIGLIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAA++L D H IATKKDKILCI MIVLAVFSNVVAIYSDAYALFKKN +P
Sbjct: 1 MTIGSLKPTKEKKSRKSKQVV-DEKVPLLPTKQEEDTGFDEFDGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIAMIIFMAFLTEASIEMLLRFSRVGKSSSYGGVMGDAYGKFGRMALQICVLVNNVGVLIVYMIIIGDVLSGTTSSGIHHAGVLEGWFGVYWWNSRTFVLLVTTLAVFAPLACLKRIDSLKFTSALSVALAVVFLVITVGITVMKLINGSISMPRLLPDVTDVTSFLDLFTVVPVLVTAYICHYNVHSIDNELEDNTKIKAVVRSSLALCSSVYVMTSLFGFLLFGDATLDDVLANFDADLGIPYGSLLNDVVRVSYAAHLMLVFPIVFYPLRLNMDGLLFPNARPLASDNLRFALISCGLIGLIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAISLRDRHNIATKKDKILCIIMIVLAVFSNVVAIYSDAYALFKKNASPS 461
BLAST of XM_017387098.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4M7V5 (Aa_trans domain-containing protein {ECO:0000259|Pfam:PF01490} (Fragment))
HSP 1 Score: 789.645 bits (2038), Expect = 0.000e+0
Identity = 386/462 (83.55%), Postives = 422/462 (91.34%), Query Frame = 0
Match: A0A6A4M7V5 (Aa_trans domain-containing protein {ECO:0000259|Pfam:PF01490} (Fragment))
HSP 1 Score: 789.645 bits (2038), Expect = 0.000e+0
Identity = 386/462 (83.55%), Postives = 422/462 (91.34%), Query Frame = 0
Query: 1 MTIGSLKPAKEKRSRKNKQLIADEKVPLLPTKQVEDGGFDEFNGASYTGAVFNLSTTIVGAGIMSLPATMKVLGLAPGIAMIVFMAFLTDASIEMLLRFSRAGKNTSYGGVMNDAFGKYGRMLLQVCVLVNNIGVLVVYMIIIGDVLSGTTSSGIHHAGVLEGWFGVQWWNGRTIVLLVTTLGIFAPLASLKRIDSLRYTSALSVALAVVFLVVTAGITVYKLISGGIMMPRLLPEATDLTSVLKLFTAVPVLVTAYICHYNVHTIENELEDRKQIRGVVRSSLALCSSVYVMISLFGFLLFGDATLDDVLANFDTNLGVPFSSLLSDVVRVSYAAHLMLVFPIVFFPLRLNLDGLLFPSARPLVLSNVRFAVISIGLIGLIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAVTLGDHHGIATKKDKILCIFMIVLAVFSNVVAIYSDAYALFKKNGTPQ 462
MTIGSLKP KEK+SRK+KQ++ DEKVPLLPTKQ ED FDEF+GAS+TGAVFNLSTTIVGAGIM+LPATMKVLGL GIAMI+FMAFLT+ASIEMLLRFSR GK++SYGGVM DAFGK+GRM LQ+CVLVNN+GVL+VYMIIIGDVLSGTTSSGIHHAGVLEGWFGV WWN RT VLLVTTL +FAPLA LKRIDSL++TSALSVALAVVFLV+T GITV KLI+G I MPRLLP+ TD+TS L LFT VPVLVTAYICHYNVH+I+NELED +I+ VVRSSLALCSSVYVM SLFGFLLFGDATLDDVLANFD +LG+P+ SLL+DVVRVSYAAHLMLVFPIVF+PLRLN+DGLLFP ARPL N+RFA+IS GLIGLIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAA+TL D H IATKKDKILCI MIVLAVFSNVVAIYSDAYALFKKN +P
Sbjct: 1 MTIGSLKPTKEKKSRKSKQVV-DEKVPLLPTKQEEDTEFDEFDGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGIAMIIFMAFLTEASIEMLLRFSRVGKSSSYGGVMGDAFGKFGRMALQICVLVNNVGVLIVYMIIIGDVLSGTTSSGIHHAGVLEGWFGVYWWNSRTFVLLVTTLAVFAPLACLKRIDSLKFTSALSVALAVVFLVITVGITVMKLINGSISMPRLLPDVTDVTSFLDLFTVVPVLVTAYICHYNVHSIDNELEDNTKIKAVVRSSLALCSSVYVMTSLFGFLLFGDATLDDVLANFDADLGIPYGSLLNDVVRVSYAAHLMLVFPIVFYPLRLNMDGLLFPYARPLASDNLRFALISCGLIGLIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAITLRDQHNIATKKDKILCIVMIVLAVFSNVVAIYSDAYALFKKNTSPS 461
BLAST of XM_017387098.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AC19 ((Putative sodium-coupled neutral amino acid transporter 6 {ECO:0000313|EMBL:MPA53428.1}))
HSP 1 Score: 782.711 bits (2020), Expect = 0.000e+0
Identity = 383/462 (82.90%), Postives = 417/462 (90.26%), Query Frame = 0
Match: A0A5B7AC19 ((Putative sodium-coupled neutral amino acid transporter 6 {ECO:0000313|EMBL:MPA53428.1}))
HSP 1 Score: 782.711 bits (2020), Expect = 0.000e+0
Identity = 383/462 (82.90%), Postives = 417/462 (90.26%), Query Frame = 0
Query: 1 MTIGSLKPAKEKRSRKNKQLIADEKVPLLPTKQVEDGGFDEFNGASYTGAVFNLSTTIVGAGIMSLPATMKVLGLAPGIAMIVFMAFLTDASIEMLLRFSRAGKNTSYGGVMNDAFGKYGRMLLQVCVLVNNIGVLVVYMIIIGDVLSGTTSSGIHHAGVLEGWFGVQWWNGRTIVLLVTTLGIFAPLASLKRIDSLRYTSALSVALAVVFLVVTAGITVYKLISGGIMMPRLLPEATDLTSVLKLFTAVPVLVTAYICHYNVHTIENELEDRKQIRGVVRSSLALCSSVYVMISLFGFLLFGDATLDDVLANFDTNLGVPFSSLLSDVVRVSYAAHLMLVFPIVFFPLRLNLDGLLFPSARPLVLSNVRFAVISIGLIGLIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAVTLGDHHGIATKKDKILCIFMIVLAVFSNVVAIYSDAYALFKKNGTPQ 462
MTIGSLKPAKEK+SR++KQ + DEK PLLPTKQ ED GFDEFNGAS+TGAVFNLSTTIVGAGIM+LPATMK LGL GIAMI+FMAFL +ASIEMLLRFSRAGK SY GVM DAFGKYGR+LLQVCVLVNNIGVL+VYMII+GDVLSGTTSSGIHHAGVLEGWFG WWNGRT VLLVTTL +FAPLA LKRIDSLR+TSALSVALA VFLV+T GIT KLI+G I MPRLLP+ TDL S KLFT VP+LVTAYICHYNVH+I+NELED QI+ VVR+SLALCS+VYVM SLFGFLLFGDATLDDVLANFD +LG+PF +L+D VRVSYAAHLMLVFPIVF+PLRLNLDGLLFPSARPL N+RF +IS GLI LIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAA+TLG+ HGIATKKDKILCIFMI LAVFSN+VAIYSDAYALFKKNG+P+
Sbjct: 1 MTIGSLKPAKEKKSRRSKQAV-DEKFPLLPTKQEEDVGFDEFNGASFTGAVFNLSTTIVGAGIMALPATMKELGLGLGIAMIIFMAFLAEASIEMLLRFSRAGKTVSYAGVMGDAFGKYGRILLQVCVLVNNIGVLIVYMIILGDVLSGTTSSGIHHAGVLEGWFGEHWWNGRTFVLLVTTLAVFAPLACLKRIDSLRFTSALSVALAFVFLVITVGITSIKLINGSISMPRLLPDVTDLASFWKLFTVVPILVTAYICHYNVHSIDNELEDTTQIKAVVRTSLALCSTVYVMTSLFGFLLFGDATLDDVLANFDADLGIPFGYVLNDAVRVSYAAHLMLVFPIVFYPLRLNLDGLLFPSARPLTSDNLRFGLISAGLIALIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAITLGNRHGIATKKDKILCIFMISLAVFSNLVAIYSDAYALFKKNGSPR 461
BLAST of XM_017387098.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AB90 ((Putative sodium-coupled neutral amino acid transporter 6 {ECO:0000313|EMBL:MPA53425.1}))
HSP 1 Score: 781.941 bits (2018), Expect = 0.000e+0
Identity = 382/462 (82.68%), Postives = 417/462 (90.26%), Query Frame = 0
Match: A0A5B7AB90 ((Putative sodium-coupled neutral amino acid transporter 6 {ECO:0000313|EMBL:MPA53425.1}))
HSP 1 Score: 781.941 bits (2018), Expect = 0.000e+0
Identity = 382/462 (82.68%), Postives = 417/462 (90.26%), Query Frame = 0
Query: 1 MTIGSLKPAKEKRSRKNKQLIADEKVPLLPTKQVEDGGFDEFNGASYTGAVFNLSTTIVGAGIMSLPATMKVLGLAPGIAMIVFMAFLTDASIEMLLRFSRAGKNTSYGGVMNDAFGKYGRMLLQVCVLVNNIGVLVVYMIIIGDVLSGTTSSGIHHAGVLEGWFGVQWWNGRTIVLLVTTLGIFAPLASLKRIDSLRYTSALSVALAVVFLVVTAGITVYKLISGGIMMPRLLPEATDLTSVLKLFTAVPVLVTAYICHYNVHTIENELEDRKQIRGVVRSSLALCSSVYVMISLFGFLLFGDATLDDVLANFDTNLGVPFSSLLSDVVRVSYAAHLMLVFPIVFFPLRLNLDGLLFPSARPLVLSNVRFAVISIGLIGLIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAVTLGDHHGIATKKDKILCIFMIVLAVFSNVVAIYSDAYALFKKNGTPQ 462
MTIGSLKPAKEK+SR++KQ++ DEK PLLPTKQ ED GFDEFNGAS+TGAVFNLSTTIVGAGIM+LPATMK LGL GIAMI+FMAFL +ASIEMLLRFSRAGK SY GVM DAFGKYGR+LLQVCVLVNNIGVL+VYMII+GDVLSGTTSSGIHHAGVLEGWFG WWNGRT VLLVTTL +FAPLA LKRIDSLR+TSALSVALA VFLV+T GIT KLI+G I MPRLLP+ TDL S KLFT VP+LVTAYICHYNVH+I+NELED QI+ VVR+SLALCS+VYVM SLFGFLLFGDATLDDVLANFD +LG+PF +L+D VRVSYAAHLMLVFPIVF+PLRLNLDGLLFPSARPL N+RF +IS GLI LIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAA+TLG+ HGIATKKDKILCIFMI LAVFSN+VAIYSDAYALFKKN +P+
Sbjct: 1 MTIGSLKPAKEKKSRRSKQVV-DEKFPLLPTKQEEDVGFDEFNGASFTGAVFNLSTTIVGAGIMALPATMKELGLGLGIAMIIFMAFLAEASIEMLLRFSRAGKTVSYAGVMGDAFGKYGRILLQVCVLVNNIGVLIVYMIILGDVLSGTTSSGIHHAGVLEGWFGEHWWNGRTFVLLVTTLAVFAPLACLKRIDSLRFTSALSVALAFVFLVITVGITSIKLINGSISMPRLLPDVTDLASFWKLFTVVPILVTAYICHYNVHSIDNELEDTTQIKAVVRTSLALCSTVYVMTSLFGFLLFGDATLDDVLANFDADLGIPFGYVLNDAVRVSYAAHLMLVFPIVFYPLRLNLDGLLFPSARPLTSDNLRFGLISTGLIALIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAITLGNRHGIATKKDKILCIFMISLAVFSNLVAIYSDAYALFKKNASPR 461
BLAST of XM_017387098.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ACB9 ((Putative sodium-coupled neutral amino acid transporter 6 {ECO:0000313|EMBL:MPA53426.1}))
HSP 1 Score: 781.556 bits (2017), Expect = 0.000e+0
Identity = 382/462 (82.68%), Postives = 418/462 (90.48%), Query Frame = 0
Match: A0A5B7ACB9 ((Putative sodium-coupled neutral amino acid transporter 6 {ECO:0000313|EMBL:MPA53426.1}))
HSP 1 Score: 781.556 bits (2017), Expect = 0.000e+0
Identity = 382/462 (82.68%), Postives = 418/462 (90.48%), Query Frame = 0
Query: 1 MTIGSLKPAKEKRSRKNKQLIADEKVPLLPTKQVEDGGFDEFNGASYTGAVFNLSTTIVGAGIMSLPATMKVLGLAPGIAMIVFMAFLTDASIEMLLRFSRAGKNTSYGGVMNDAFGKYGRMLLQVCVLVNNIGVLVVYMIIIGDVLSGTTSSGIHHAGVLEGWFGVQWWNGRTIVLLVTTLGIFAPLASLKRIDSLRYTSALSVALAVVFLVVTAGITVYKLISGGIMMPRLLPEATDLTSVLKLFTAVPVLVTAYICHYNVHTIENELEDRKQIRGVVRSSLALCSSVYVMISLFGFLLFGDATLDDVLANFDTNLGVPFSSLLSDVVRVSYAAHLMLVFPIVFFPLRLNLDGLLFPSARPLVLSNVRFAVISIGLIGLIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAVTLGDHHGIATKKDKILCIFMIVLAVFSNVVAIYSDAYALFKKNGTPQ 462
MTIGSLKPAKEK+SR++KQ++ DEKVPLLPTK+ ED GFDEFNGAS+TGAVFNLSTTIVGAGIM+LPATMK LGL GIAMI+FMAFL +ASIEMLLRFSRAGK SY GVM DAFGKYGR+LLQVCVLVNNIGVL+VYMII+GDVLSGTTSSGIHHAGVLEGWFG WWNGRT VLLVTTL +FAPLA LKRIDSLR+TSALSVALA VFLV+T GIT KLI+G I MPRLLP+ TDL S KLFT VP+LVTAYICHYNVH+I+NELED QI+ VVR+SLALCS+VYVM SLFGFLLFGDATLDDVLANFD +LG+PF +L+D VRVSYAAHLMLVFPIVF+PLRLNLDGLLFPSARPL N+RF +IS GLI LIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAA+TLG+ HGIATKKDKILCIFMI LAVFSN+VAIYSDAYALFKKN +P+
Sbjct: 1 MTIGSLKPAKEKKSRRSKQVV-DEKVPLLPTKKEEDVGFDEFNGASFTGAVFNLSTTIVGAGIMALPATMKELGLGLGIAMIIFMAFLAEASIEMLLRFSRAGKTVSYAGVMGDAFGKYGRILLQVCVLVNNIGVLIVYMIILGDVLSGTTSSGIHHAGVLEGWFGEHWWNGRTFVLLVTTLAVFAPLACLKRIDSLRFTSALSVALAFVFLVITVGITSIKLINGSISMPRLLPDVTDLASFWKLFTVVPILVTAYICHYNVHSIDNELEDTTQIKAVVRTSLALCSTVYVMTSLFGFLLFGDATLDDVLANFDADLGIPFGYVLNDAVRVSYAAHLMLVFPIVFYPLRLNLDGLLFPSARPLTSDNLRFGLISAGLIALIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAITLGNRHGIATKKDKILCIFMISLAVFSNLVAIYSDAYALFKKNASPR 461
BLAST of XM_017387098.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PAF3 ((Sodium-coupled neutral amino acid transporter like {ECO:0000313|EMBL:PSR87777.1}))
HSP 1 Score: 780.4 bits (2014), Expect = 0.000e+0
Identity = 383/462 (82.90%), Postives = 417/462 (90.26%), Query Frame = 0
Match: A0A2R6PAF3 ((Sodium-coupled neutral amino acid transporter like {ECO:0000313|EMBL:PSR87777.1}))
HSP 1 Score: 780.4 bits (2014), Expect = 0.000e+0
Identity = 383/462 (82.90%), Postives = 417/462 (90.26%), Query Frame = 0
Query: 1 MTIGSLKPAKEKRSRKNKQLIADEKVPLLPTKQVEDGGFDEFNGASYTGAVFNLSTTIVGAGIMSLPATMKVLGLAPGIAMIVFMAFLTDASIEMLLRFSRAGKNTSYGGVMNDAFGKYGRMLLQVCVLVNNIGVLVVYMIIIGDVLSGTTSSGIHHAGVLEGWFGVQWWNGRTIVLLVTTLGIFAPLASLKRIDSLRYTSALSVALAVVFLVVTAGITVYKLISGGIMMPRLLPEATDLTSVLKLFTAVPVLVTAYICHYNVHTIENELEDRKQIRGVVRSSLALCSSVYVMISLFGFLLFGDATLDDVLANFDTNLGVPFSSLLSDVVRVSYAAHLMLVFPIVFFPLRLNLDGLLFPSARPLVLSNVRFAVISIGLIGLIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAVTLGDHHGIATKKDKILCIFMIVLAVFSNVVAIYSDAYALFKKNGTPQ 462
MTIGSLK K K+SRK+KQ++ DEKVPLLPTK+ ED G DEF+GAS+TGAVFNLSTTIVGAGIM+LPATMK LGL GIAMIVFMA L +ASIEMLLRFSRAGK TSYGGVM DAFGKYGR+ LQ+CVLVNNIGVL+VYMIIIGDVLSGTTSSG+HHAGVLEGWFGV WWNGRT VLLVTTL +FAPLA LKRIDSLR+TSALSVALAVVFL++T GIT+ KLI+G I MPRLLP TDLTS L LFT VPVLVTAYICHYNVH+I+NELED QI+ VVRSSL LC++VYVM SLFGFLLFGDATLDDVLANFDT+LG+PF LL+DVVRVSYAAHLMLVFPIVF+PLRLNLDGLLFP+A PL L N+RFA IS GLI LIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAA+TL D HGIATKKDKILCI MIVLAVFSN+VAIYSDAYALFKKN +P+
Sbjct: 1 MTIGSLKTVKGKKSRKSKQVV-DEKVPLLPTKKEEDVGLDEFDGASFTGAVFNLSTTIVGAGIMALPATMKALGLVLGIAMIVFMALLAEASIEMLLRFSRAGKTTSYGGVMGDAFGKYGRIFLQICVLVNNIGVLIVYMIIIGDVLSGTTSSGVHHAGVLEGWFGVYWWNGRTFVLLVTTLAVFAPLACLKRIDSLRFTSALSVALAVVFLIITMGITIIKLINGSISMPRLLPNVTDLTSFLNLFTVVPVLVTAYICHYNVHSIDNELEDNTQIKAVVRSSLGLCATVYVMTSLFGFLLFGDATLDDVLANFDTDLGIPFGYLLNDVVRVSYAAHLMLVFPIVFYPLRLNLDGLLFPNASPLALDNLRFASISFGLIALIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAITLRDRHGIATKKDKILCIVMIVLAVFSNLVAIYSDAYALFKKNASPR 461
BLAST of XM_017387098.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A830CSA8 ((Sodium-coupled neutral amino acid transporter 3 {ECO:0000313|EMBL:GFQ01093.1}))
HSP 1 Score: 776.933 bits (2005), Expect = 0.000e+0
Identity = 378/462 (81.82%), Postives = 417/462 (90.26%), Query Frame = 0
Match: A0A830CSA8 ((Sodium-coupled neutral amino acid transporter 3 {ECO:0000313|EMBL:GFQ01093.1}))
HSP 1 Score: 776.933 bits (2005), Expect = 0.000e+0
Identity = 378/462 (81.82%), Postives = 417/462 (90.26%), Query Frame = 0
Query: 1 MTIGSLKPAKEKRSRKNKQLIADEKVPLLPTKQVEDGGFDEFNGASYTGAVFNLSTTIVGAGIMSLPATMKVLGLAPGIAMIVFMAFLTDASIEMLLRFSRAGKNTSYGGVMNDAFGKYGRMLLQVCVLVNNIGVLVVYMIIIGDVLSGTTSSGIHHAGVLEGWFGVQWWNGRTIVLLVTTLGIFAPLASLKRIDSLRYTSALSVALAVVFLVVTAGITVYKLISGGIMMPRLLPEATDLTSVLKLFTAVPVLVTAYICHYNVHTIENELEDRKQIRGVVRSSLALCSSVYVMISLFGFLLFGDATLDDVLANFDTNLGVPFSSLLSDVVRVSYAAHLMLVFPIVFFPLRLNLDGLLFPSARPLVLSNVRFAVISIGLIGLIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAVTLGDHHGIATKKDKILCIFMIVLAVFSNVVAIYSDAYALFKKNGTPQ 462
MT GS KPAKE++SRK+KQ I DEK PLLPTK EDGGFDEFNGAS++GAVFNLSTTIVGAGIM+LPATMKVLGL GIAMI+FMAFLT+ASIE+LLRFSR K+ SYGG+M DAFGKYGRML+Q+CVLVNNIGVL+VYMIIIGDVLSGTTS GIHHAGVLEGWFG QWWNGR +LL+TT+ +FAPLASLKRIDSLRYTSALSVALAVVFLV+T GITV+KLI+G +MPRLLP+ TDLTS L LFT VPVLVTAYICHYNVHTI+NELED QI+GVVR++LALCSSVYVM SLFGFLLFGD TLDDVLANF T+LG+PF SLL+D VRVSYAAHLMLVFPIVFFPLRLNLDGLLFPSARPL N+RFA +S GLI ++FLGANFIPSIWDAFQFTGATAAVCIGFIFPAA+TL D +GIAT +DKIL IFMIVLAVFSNVVA+YSDAYALF KNG+
Sbjct: 1 MTTGSFKPAKERKSRKSKQAIVDEKSPLLPTKHSEDGGFDEFNGASFSGAVFNLSTTIVGAGIMALPATMKVLGLFLGIAMIIFMAFLTEASIELLLRFSRTSKSVSYGGLMGDAFGKYGRMLIQLCVLVNNIGVLIVYMIIIGDVLSGTTSDGIHHAGVLEGWFGEQWWNGRFFILLITTVAVFAPLASLKRIDSLRYTSALSVALAVVFLVITVGITVFKLINGTTLMPRLLPDVTDLTSFLNLFTVVPVLVTAYICHYNVHTIDNELEDSTQIKGVVRTALALCSSVYVMTSLFGFLLFGDGTLDDVLANFSTDLGIPFGSLLNDAVRVSYAAHLMLVFPIVFFPLRLNLDGLLFPSARPLSSDNLRFASLSTGLIAVVFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAITLRDRYGIATNRDKILSIFMIVLAVFSNVVAVYSDAYALF-KNGSSH 461
BLAST of XM_017387098.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1PEE5 ((Transmembrane amino acid transporter family protein {ECO:0000313|EMBL:PWA84148.1}))
HSP 1 Score: 776.933 bits (2005), Expect = 0.000e+0
Identity = 379/459 (82.57%), Postives = 416/459 (90.63%), Query Frame = 0
Match: A0A2U1PEE5 ((Transmembrane amino acid transporter family protein {ECO:0000313|EMBL:PWA84148.1}))
HSP 1 Score: 776.933 bits (2005), Expect = 0.000e+0
Identity = 379/459 (82.57%), Postives = 416/459 (90.63%), Query Frame = 0
Query: 1 MTIGSLKPAKEKRSRKNKQLIADEKVPLLPTKQVEDGGFDEFNGASYTGAVFNLSTTIVGAGIMSLPATMKVLGLAPGIAMIVFMAFLTDASIEMLLRFSRAGKNTSYGGVMNDAFGKYGRMLLQVCVLVNNIGVLVVYMIIIGDVLSGTTSSGIHHAGVLEGWFGVQWWNGRTIVLLVTTLGIFAPLASLKRIDSLRYTSALSVALAVVFLVVTAGITVYKLISGGIMMPRLLPEATDLTSVLKLFTAVPVLVTAYICHYNVHTIENELEDRKQIRGVVRSSLALCSSVYVMISLFGFLLFGDATLDDVLANFDTNLGVPFSSLLSDVVRVSYAAHLMLVFPIVFFPLRLNLDGLLFPSARPLVLSNVRFAVISIGLIGLIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAVTLGDHHGIATKKDKILCIFMIVLAVFSNVVAIYSDAYALFKKNG 459
MTIG+ K AKEKRSRKNKQ I DEK PLLPTK E+ FDEFNGASYTGAVFNLSTTIVGAGIM+LPATMKVLGL PGIA+I+FMAFLTDASI++L+RFSRAGK+ SYGGVM+DAFG GRMLLQVCV+VNNIGVLVVYMIIIGDVL+GTTS GIHHAGVL+GWFGV WWNGR VLLVTTLG+FAPLASLKRIDSL YTSALSVALAVVFLV+TAGIT++KL++G IMMP+L P+ D TS LFT VPVLVTAYICHYNVH+I+NELED +I+ VVR+SL LCSSVYVM S+FGFLLFGD TLDDVLANFDTNLG+P+SSLL+D VRVSYAAHLMLVFPIVFFPLRLNLDGLLFP LV N+RFA I+IGLIG+IFLGANFIPSIWDAFQFTGATAAVCIGFIFP+A+TLGD +GIATKKDKILCIFMIVLAVFSNVVA+YSDA ALFKKNG
Sbjct: 1 MTIGNEKHAKEKRSRKNKQPIVDEKSPLLPTKGEEEHSFDEFNGASYTGAVFNLSTTIVGAGIMALPATMKVLGLVPGIALIIFMAFLTDASIDLLIRFSRAGKSLSYGGVMDDAFGSIGRMLLQVCVMVNNIGVLVVYMIIIGDVLAGTTSDGIHHAGVLQGWFGVHWWNGRFFVLLVTTLGVFAPLASLKRIDSLSYTSALSVALAVVFLVITAGITIFKLLNGSIMMPKLFPDIVDFTSAFNLFTVVPVLVTAYICHYNVHSIDNELEDNTKIKAVVRTSLVLCSSVYVMTSIFGFLLFGDNTLDDVLANFDTNLGIPYSSLLNDAVRVSYAAHLMLVFPIVFFPLRLNLDGLLFPRKGALVADNLRFASITIGLIGVIFLGANFIPSIWDAFQFTGATAAVCIGFIFPSAITLGDRYGIATKKDKILCIFMIVLAVFSNVVAVYSDALALFKKNG 459
BLAST of XM_017387098.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A9L9 ((Putative Transmembrane amino acid transporter family protein isoform 1 {ECO:0000313|EMBL:MPA53429.1}))
HSP 1 Score: 775.393 bits (2001), Expect = 0.000e+0
Identity = 378/462 (81.82%), Postives = 418/462 (90.48%), Query Frame = 0
Match: A0A5B7A9L9 ((Putative Transmembrane amino acid transporter family protein isoform 1 {ECO:0000313|EMBL:MPA53429.1}))
HSP 1 Score: 775.393 bits (2001), Expect = 0.000e+0
Identity = 378/462 (81.82%), Postives = 418/462 (90.48%), Query Frame = 0
Query: 1 MTIGSLKPAKEKRSRKNKQLIADEKVPLLPTKQVEDGGFDEFNGASYTGAVFNLSTTIVGAGIMSLPATMKVLGLAPGIAMIVFMAFLTDASIEMLLRFSRAGKNTSYGGVMNDAFGKYGRMLLQVCVLVNNIGVLVVYMIIIGDVLSGTTSSGIHHAGVLEGWFGVQWWNGRTIVLLVTTLGIFAPLASLKRIDSLRYTSALSVALAVVFLVVTAGITVYKLISGGIMMPRLLPEATDLTSVLKLFTAVPVLVTAYICHYNVHTIENELEDRKQIRGVVRSSLALCSSVYVMISLFGFLLFGDATLDDVLANFDTNLGVPFSSLLSDVVRVSYAAHLMLVFPIVFFPLRLNLDGLLFPSARPLVLSNVRFAVISIGLIGLIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAVTLGDHHGIATKKDKILCIFMIVLAVFSNVVAIYSDAYALFKKNGTPQ 462
MTIGSL+PA+EK+SR+++Q++ DEK PLLP +Q ED G EFNGAS+TGAVFNLSTTIVGAGIM+LPATMKV GL GIAMI FMAFLT+ASIE+LLRFSRAG SYGGVM DAFGKYGR+LLQVCVLVNNIGVL+VYMIIIGDVLSGT+SSGIHHAGVLEGWFG WWNGRT VLLVTTL +FAPLA LKR+DSLR+TSALSVALAVVFLV+T GIT KLI+G I+MPRLLP TDLTS KLFT VPVLVTAYICHYNVH+I+NELED QI+ VVR+SL LCS+VY+M SLFGFLLFGDATLDDVLANFDT+LG+PF S+L+D VRVSYAAHLMLVFPIVF+PLRLNLDGLLFPSARPL N+RF +IS GLI LIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAA+TLG+ HGIATKKDKILCIFMI LAVFSN+VAIYSDAYALFKKNG+P+
Sbjct: 1 MTIGSLQPAREKKSRRSEQVV-DEKAPLLPARQEEDVGSAEFNGASFTGAVFNLSTTIVGAGIMALPATMKVSGLGLGIAMISFMAFLTEASIELLLRFSRAGNTLSYGGVMGDAFGKYGRILLQVCVLVNNIGVLIVYMIIIGDVLSGTSSSGIHHAGVLEGWFGEHWWNGRTFVLLVTTLAVFAPLACLKRLDSLRFTSALSVALAVVFLVITMGITFIKLINGSILMPRLLPNVTDLTSFWKLFTVVPVLVTAYICHYNVHSIDNELEDTTQIKAVVRTSLTLCSTVYIMTSLFGFLLFGDATLDDVLANFDTDLGIPFGSVLNDAVRVSYAAHLMLVFPIVFYPLRLNLDGLLFPSARPLTSDNLRFGLISAGLIALIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAITLGNRHGIATKKDKILCIFMISLAVFSNLVAIYSDAYALFKKNGSPR 461
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5C2V1 | E-Value: 0.000e+0, PID: 83.77 | Aa_trans domain-containing protein {ECO:0000259|Pf... [more] |
| A0A834LDH9 | E-Value: 0.000e+0, PID: 83.33 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7134... [more] |
| A0A6A4M7V5 | E-Value: 0.000e+0, PID: 83.55 | Aa_trans domain-containing protein {ECO:0000259|Pf... [more] |
| A0A5B7AC19 | E-Value: 0.000e+0, PID: 82.90 | (Putative sodium-coupled neutral amino acid transp... [more] |
| A0A5B7AB90 | E-Value: 0.000e+0, PID: 82.68 | (Putative sodium-coupled neutral amino acid transp... [more] |
| A0A5B7ACB9 | E-Value: 0.000e+0, PID: 82.68 | (Putative sodium-coupled neutral amino acid transp... [more] |
| A0A2R6PAF3 | E-Value: 0.000e+0, PID: 82.90 | (Sodium-coupled neutral amino acid transporter lik... [more] |
| A0A830CSA8 | E-Value: 0.000e+0, PID: 81.82 | (Sodium-coupled neutral amino acid transporter 3 {... [more] |
| A0A2U1PEE5 | E-Value: 0.000e+0, PID: 82.57 | (Transmembrane amino acid transporter family prote... [more] |
| A0A5B7A9L9 | E-Value: 0.000e+0, PID: 81.82 | (Putative Transmembrane amino acid transporter fam... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |