Resource Type:
Polypeptide
Name:
XM_017386817.1
Identifier:
XM_017386817.1-protein
Sequence:
MTSTPLVKPLLLACFVISCIYTSVIAEDDVTCLQGFKDSIQDVDNKLFEW
SFGNTTVGYICKYTGVTCWNDRENRVVSLELRELNLAGQLPKALQSCHNN
LQTLVLAGNNFSGSIPDKICSWLPFLSTLDLSGNKFVGSIPASLADCTYL
NNLILSDNQLSGEIPVQLTSLNRLKKFSVSNNALKGTVPSAFSKFDESDF
SGNSGLCGGPLKKCGGLSKKNLAIIIAAGVLGAVGSLLLGFGLWWWCLRS
NRRKKGSGYGGEDSESWVEKLRAHKLVQVSLFQKPLVKVRLVDLMAATNN
FDGASVIITARTGTTYKAVLPDGSALAIKRLSRCKLSERQFGFEMNRLGQ
LRHPNLTPLLGYCLVEDEKLLVYKYMSNGTLYSMLNGGNASELDWETRFR
IGLGAARGLAWLHHGCYPSILHQNISSNMILLDEDFDARIMDVGLAKLMT
YSDPNERGLVNGELGELGYVAPEYSSTMAASGKGDVYSLGVVFLELATGQ
RCLEVSGAEEGFKGNLVDWVNHLSVSGRIKDAIDKRLRGRKHDEDIEQFL
RIACHCVETVPKDRWSMFKVYESLRIIAEEHGFSEQYDEFPLLFGKEDMD
KVI
Sequence Length:
603
Sequence Checksum:
dfc900c2cbb72b1ec174d9ff032855e4
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017386817.1, derives from mRNA, XM_017386817.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017386817.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
back to top
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017386817.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4CX04 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 845.884 bits (2184), Expect = 0.000e+0
Identity = 410/580 (70.69%), Postives = 480/580 (82.76%), Query Frame = 0
Match: A0A4S4CX04 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 845.884 bits (2184), Expect = 0.000e+0
Identity = 410/580 (70.69%), Postives = 480/580 (82.76%), Query Frame = 0
Query: 23 SVIAEDDVTCLQGFKDSIQDVDNKLFEWSFGNTTVGYICKYTGVTCWNDRENRVVSLELRELNLAGQLPKALQSCHNNLQTLVLAGNNFSGSIPDKICSWLPFLSTLDLSGNKFVGSIPASLADCTYLNNLILSDNQLSGEIPVQLTSLNRLKKFSVSNNALKGTVPSAFSKFDESDFSGNSGLCGGPLKKCGGLSKKNLAIIIAAGVLGAVGSLLLGFGLWWWCLR--SNRRKKGSGYGGEDSESWVEKLRAHKLVQVSLFQKPLVKVRLVDLMAATNNFDGASVIITARTGTTYKAVLPDGSALAIKRLSRCKLSERQFGFEMNRLGQLRHPNLTPLLGYCLVEDEKLLVYKYMSNGTLYSMLNGGNASELDWETRFRIGLGAARGLAWLHHGCYPSILHQNISSNMILLDEDFDARIMDVGLAKLMTYSDPNERGLVNGELGELGYVAPEYSSTMAASGKGDVYSLGVVFLELATGQRCLEVSGAEEGFKGNLVDWVNHLSVSGRIKDAIDKRLRGRKHDEDIEQFLRIACHCVETVPKDRWSMFKVYESLRIIAEEHGFSEQYDEFPLLFGKEDMD 600
SVI EDDV CLQG K S D + KL W+F N ++G+ICK+ GV+CWNDRENR++SLELR++NL G +P +LQ C++ LQTL L+GNN +GSIP++ICSWLP+L TLDLS N VGSIP +L +CT+LN LILS+NQL+G IP QL+SL RLKK SV+NN L GT+PS + FD ++F GNSGLCGGPL KCG LSKKNLAIIIAAGV GA SLLLGFGLWWW S RRK+G G+G +D SW E+LRAHKLVQV LFQKPLVKV+L DLMAATNNF+ ++II++RTGTTYKAVLPDGSALAIKRL+ CKLSE+QF EMNRLGQLRHPNL PLLG+C+VE+EKLLVYK+M NGT++S+L+G NAS L+W TRFRIG GAARGLAWLHHGC P ILHQNISSN+ILLDEDFDARIMD GLA+LMT S+ NE VNG+LGE GY+APEYSSTM AS KGDVYS GVV LELATGQ+ L+V EE FKGNLVDWV+ LS SGRIKDAIDK L G+ HDE+I QFLRIA +CV + PKDRW M++VYESL+ IAEE GFSE YDEFPLLF +++ D
Sbjct: 24 SVIGEDDVKCLQGVKSSFTDPEAKLSSWTFANASIGFICKFVGVSCWNDRENRLISLELRDMNLGGDIPNSLQYCYS-LQTLDLSGNNLNGSIPNEICSWLPYLVTLDLSNNNLVGSIPVNLVNCTFLNILILSNNQLTGTIPYQLSSLGRLKKLSVANNHLFGTIPSFLNAFDSANFVGNSGLCGGPLGKCGSLSKKNLAIIIAAGVFGAAASLLLGFGLWWWYFTKASRRRKRGYGFGRDDDGSWAERLRAHKLVQVQLFQKPLVKVKLADLMAATNNFNAENIIISSRTGTTYKAVLPDGSALAIKRLNTCKLSEKQFRLEMNRLGQLRHPNLAPLLGFCVVEEEKLLVYKHMLNGTMHSLLDG-NASVLEWPTRFRIGFGAARGLAWLHHGCQPPILHQNISSNVILLDEDFDARIMDFGLARLMTSSNMNEGTFVNGDLGEFGYIAPEYSSTMVASLKGDVYSFGVVLLELATGQKPLDVCNTEEEFKGNLVDWVSQLSSSGRIKDAIDKSLCGKGHDEEIVQFLRIAYNCVVSRPKDRWPMYQVYESLKSIAEEQGFSEPYDEFPLLFCRQNTD 601
BLAST of XM_017386817.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VHE1 ((LOW QUALITY PROTEIN: inactive LRR receptor-like serine/threonine-protein kinase BIR2 {ECO:0000313|RefSeq:XP_027102106.1}))
HSP 1 Score: 832.787 bits (2150), Expect = 0.000e+0
Identity = 408/602 (67.77%), Postives = 481/602 (79.90%), Query Frame = 0
Match: A0A6P6VHE1 ((LOW QUALITY PROTEIN: inactive LRR receptor-like serine/threonine-protein kinase BIR2 {ECO:0000313|RefSeq:XP_027102106.1}))
HSP 1 Score: 832.787 bits (2150), Expect = 0.000e+0
Identity = 408/602 (67.77%), Postives = 481/602 (79.90%), Query Frame = 0
Query: 2 TSTPLVKPLLLACFV-ISCIYTSVIAEDDVTCLQGFKDSIQDVDNKLFEWSFGNTTVGYICKYTGVTCWNDRENRVVSLELRELNLAGQLPKALQSCHNNLQTLVLAGNNFSGSIPDKICSWLPFLSTLDLSGNKFVGSIPASLADCTYLNNLILSDNQLSGEIPVQLTSLNRLKKFSVSNNALKGTVPSAFSKFDESDFSGNSGLCGGPLKKCGGLSKKNLAIIIAAGVLGAVGSLLLGFGLWWWCL-RSNRRKKGS-GYGGEDSESWVEKLRAHKLVQVSLFQKPLVKVRLVDLMAATNNFDGASVIITARTGTTYKAVLPDGSALAIKRLSRCKLSERQFGFEMNRLGQLRHPNLTPLLGYCLVEDEKLLVYKYMSNGTLYSMLNGGNASELDWETRFRIGLGAARGLAWLHHGCYPSILHQNISSNMILLDEDFDARIMDVGLAKLMTYSDPNERGLVNGELGELGYVAPEYSSTMAASGKGDVYSLGVVFLELATGQRCLEVSGAEEGFKGNLVDWVNHLSVSGRIKDAIDKRLRGRKHDEDIEQFLRIACHCVETVPKDRWSMFKVYESLRIIAEEHGFSEQYDEFPLLFGKEDMD 600
+S L+ +LL V IS + VIAEDDV CL G K S++D D + W+F N++VG++C + GV+CWN RENR++SLELRE+NL+G +P ALQ CH+ LQTL L+GN+ SG IP +IC WLP+L T+DLSGN G+IP L C+YLN+L+L DN+LSG IP Q ++L RLKKFSV+NN L G VPS + E +F GNSGLCGGP +KCGGLSKKNLAIIIAAGV GA S+LLGFG WWW +S RR+KG G G +DS+SW E+LRAHKL QV LFQKPLVKV+L DL ATNNF +VI + RTGTTYKAVL DGSALAIKRLS CK+ E+QF EMNRLGQLRHPNL PLLG+C+VE+EKLLVYK++SNGTLYS+L+G NA+ LDW TRFRIGLGAARG+AWLHHGC P I+HQNISSN+ILLDEDFDARIMD GLA+LMT SD NE VNG+LGE GYVAPEYSST+ AS KGD YS GVV +ELATGQ+ LEV AEEGFKGNLVDWVN LS SG+IKDAID LRG+ HDE+I QFLRIAC+CV + PKDR M++VYESL+ +AE+ GFSEQYDEFPLLFGK D D
Sbjct: 4 SSPKLISSILLIYLVTISNLGKFVIAEDDVKCLHGVKSSLRDPDGRSAXWNFSNSSVGFVCDFVGVSCWNXRENRLISLELREMNLSGGVPDALQYCHS-LQTLDLSGNDLSGPIPPQICDWLPYLVTVDLSGNALTGTIPEDLVKCSYLNSLVLDDNKLSGNIPYQFSTLGRLKKFSVANNGLSGRVPSFTAVGVELNFDGNSGLCGGPXRKCGGLSKKNLAIIIAAGVFGAAASMLLGFGAWWWYFTKSGRRRKGGYGIGRDDSDSWAERLRAHKLTQVMLFQKPLVKVKLADLFVATNNFSAENVIYSTRTGTTYKAVLRDGSALAIKRLSTCKMGEKQFRMEMNRLGQLRHPNLVPLLGFCVVEEEKLLVYKHLSNGTLYSLLSG-NATILDWPTRFRIGLGAARGIAWLHHGCXPPIMHQNISSNVILLDEDFDARIMDFGLARLMTSSDSNESSFVNGDLGEFGYVAPEYSSTLVASLKGDAYSFGVVLMELATGQKPLEVGCAEEGFKGNLVDWVNQLSSSGQIKDAIDGTLRGKGHDEEIVQFLRIACNCVVSRPKDRXLMYQVYESLKSMAEKQGFSEQYDEFPLLFGKNDAD 603
BLAST of XM_017386817.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RK91 ((Inactive LRR receptor-like serine/threonine-protein kinase {ECO:0000313|EMBL:PSS30423.1}))
HSP 1 Score: 831.632 bits (2147), Expect = 0.000e+0
Identity = 407/595 (68.40%), Postives = 477/595 (80.17%), Query Frame = 0
Match: A0A2R6RK91 ((Inactive LRR receptor-like serine/threonine-protein kinase {ECO:0000313|EMBL:PSS30423.1}))
HSP 1 Score: 831.632 bits (2147), Expect = 0.000e+0
Identity = 407/595 (68.40%), Postives = 477/595 (80.17%), Query Frame = 0
Query: 10 LLLACFVISCIYTSVIAEDDVTCLQGFKDSIQDVDNKLFEWSFGNTTVGYICKYTGVTCWNDRENRVVSLELRELNLAGQLPKALQSCHNNLQTLVLAGNNFSGSIPDKICSWLPFLSTLDLSGNKFVGSIPASLADCTYLNNLILSDNQLSGEIPVQLTSLNRLKKFSVSNNALKGTVPSAFSKFDESDFSGNSGLCGGPLKKCGGLSKKNLAIIIAAGVLGAVGSLLLGFGLWWWCL-RSNRRKKGSGYGGEDSESWVEKLRAHKLVQVSLFQKPLVKVRLVDLMAATNNFDGASVIITARTGTTYKAVLPDGSALAIKRLSRCKLSERQFGFEMNRLGQLRHPNLTPLLGYCLVEDEKLLVYKYMSNGTLYSMLNGGNASELDWETRFRIGLGAARGLAWLHHGCYPSILHQNISSNMILLDEDFDARIMDVGLAKLMTYSDPNERGLVNGELGELGYVAPEYSSTMAASGKGDVYSLGVVFLELATGQRCLEVSGAEEGFKGNLVDWVNHLSVSGRIKDAIDKRLRGRKHDEDIEQFLRIACHCVETVPKDRWSMFKVYESLRIIAEEHGFSEQYDEFPLLFGKEDMDKVI 603
LLL + C+ VI++DDV CLQG KDS+ D ++KL WSF N++VG+IC + GV+CWNDRENR+++L LRE+ L GQ+P ALQ C++ LQ L L+ N+ SGSIP +IC+WLP+L TLDLS N GSIP LA C++LN LILSDN+LSG IP QL+SL RL KFSV+NN L GT+P+ + D DF GNSGLCG PL KCGGLSKKNLAIIIAAGV GA SLLLGFGLWWW +S RK+G +D+ E+LRA+KLVQV+LFQKPLVKV+L DLMAATNNF ++II+ RTGTTYKAVLPDGSALAIKRL+ CKLSE+QF EMNRLGQLRHPNL PLLG+C+VE+EKLLVYK+MS+GTLY +L+G N S LDW TRFRIG GAARGLAWLHHGC P I+ ISSN+ILLDEDFDARIMD GLA+LM SD NE VNG+LGE GYVAPEYSSTM AS KGDVY +GVV LELATGQ+ L+V AEEGFKGNLVDWVN LS SGRIKDAIDK L GR HDE+I QFL+IAC+CV + PK+RW M++VYESL+ IAE GFSEQYDEFPLLFG++D D +I
Sbjct: 10 LLLLAVLFCCVVPFVISKDDVKCLQGVKDSLTDPESKLSSWSFMNSSVGFICNFVGVSCWNDRENRLITLTLREMGLGGQVPDALQYCYS-LQNLDLSSNDLSGSIPSEICTWLPYLVTLDLSNNHLTGSIPVDLAKCSFLNKLILSDNKLSGNIPYQLSSLGRLNKFSVANNDLTGTIPAFLNGSDSGDFVGNSGLCGRPLGKCGGLSKKNLAIIIAAGVFGAAASLLLGFGLWWWYFTKSGSRKRGHRVRRDDTGRLAERLRAYKLVQVTLFQKPLVKVKLADLMAATNNFSAENIIISTRTGTTYKAVLPDGSALAIKRLNTCKLSEKQFRLEMNRLGQLRHPNLAPLLGFCVVEEEKLLVYKHMSSGTLYLLLHG-NGSVLDWPTRFRIGFGAARGLAWLHHGCQPPIVQHYISSNVILLDEDFDARIMDFGLARLMMSSDMNETSFVNGDLGEFGYVAPEYSSTMVASLKGDVYGIGVVLLELATGQKPLDVGNAEEGFKGNLVDWVNQLSSSGRIKDAIDKSLCGRGHDEEIVQFLKIACNCVVSRPKERWPMYQVYESLKSIAERQGFSEQYDEFPLLFGRQDPDTLI 602
BLAST of XM_017386817.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TJ70 ((inactive LRR receptor-like serine/threonine-protein kinase BIR2 {ECO:0000313|RefSeq:XP_011085787.1}))
HSP 1 Score: 830.861 bits (2145), Expect = 0.000e+0
Identity = 412/594 (69.36%), Postives = 477/594 (80.30%), Query Frame = 0
Match: A0A6I9TJ70 ((inactive LRR receptor-like serine/threonine-protein kinase BIR2 {ECO:0000313|RefSeq:XP_011085787.1}))
HSP 1 Score: 830.861 bits (2145), Expect = 0.000e+0
Identity = 412/594 (69.36%), Postives = 477/594 (80.30%), Query Frame = 0
Query: 11 LLACFVISCIYTSVIAEDDVTCLQGFKDSIQDVDNKLFEWSFGNTTVGYICKYTGVTCWNDRENRVVSLELRELNLAGQLPKALQSCHNNLQTLVLAGNNFSGSIPDKICSWLPFLSTLDLSGNKFVGSIPASLADCTYLNNLILSDNQLSGEIPVQLTSLNRLKKFSVSNNALKGTVPSAFSKFD--ESDFSGNSGLCGGPLKKCGGLSKKNLAIIIAAGVLGAVGSLLLGFGLWWWCL--RSNRRKKGSGYGGEDS--ESWVEKLRAHKLVQVSLFQKPLVKVRLVDLMAATNNFDGASVIITARTGTTYKAVLPDGSALAIKRLSRCKLSERQFGFEMNRLGQLRHPNLTPLLGYCLVEDEKLLVYKYMSNGTLYSMLNGGNASELDWETRFRIGLGAARGLAWLHHGCYPSILHQNISSNMILLDEDFDARIMDVGLAKLMTYSDPNERGLVNGELGELGYVAPEYSSTMAASGKGDVYSLGVVFLELATGQRCLEVSGAEEGFKGNLVDWVNHLSVSGRIKDAIDKRLRGRKHDEDIEQFLRIACHCVETVPKDRWSMFKVYESLRIIAEEHGFSEQYDEFPLLFGKED 598
LL F+ C S AEDDV CLQ K S+ D KL W F NT+VG+IC++ GV+CWNDRENR++ LELR+ +LAG +P +LQ CH+ LQTL L+GN+ SGSIP +IC+WLP+L TLDLS N G IP LA+C++LN LIL DN+LSG IP QL++L RL+KFSV+NN L G VPS K+D E DFSGNSGLCGGPL KCGGLSKKNLAIIIAAGV GA SLLLGFGLWWWC S RRK+ GG D SW E+LRAHKL QV LFQKPLVKV+L DL+AATNNF +VI+++RTGTTYKAVLPDGSALAIKRLS CK+ E+QF EMNRLGQLRHPNL PLLG+CLVE+EKLLVYK++SNGTL S+L+G NA LDW RFRI LGAARGLAWLHHGC P ILHQNISSN++LLDEDFDARIMD GLA+LMT S+ N+ VNG+LGE+GYVAPEYSST+ AS KGD YS GVV LELATG + L+V+ A+E KGNLVDWVN LS SGRIKDAIDKRL G+ HDEDI +FLRIAC+CV + PKDRWSM++VYESL+ +AEEHGFSEQYDEFPLLFGK +
Sbjct: 16 LLLIFLFIC---SSFAEDDVRCLQEVKRSLTDTGGKLNSWVFSNTSVGFICRFVGVSCWNDRENRLIGLELRDFSLAGDIPDSLQFCHS-LQTLDLSGNSLSGSIPPQICTWLPYLVTLDLSRNSLTGHIPEDLANCSFLNALILDDNKLSGSIPYQLSNLGRLRKFSVANNDLSGRVPSF--KYDSLEHDFSGNSGLCGGPLGKCGGLSKKNLAIIIAAGVFGAAASLLLGFGLWWWCFTRSSKRRKRQYATGGRDDGGSSWAERLRAHKLTQVMLFQKPLVKVKLADLLAATNNFSTENVIVSSRTGTTYKAVLPDGSALAIKRLSTCKIGEKQFRVEMNRLGQLRHPNLVPLLGFCLVEEEKLLVYKHLSNGTLGSLLSG-NADVLDWSARFRIALGAARGLAWLHHGCQPPILHQNISSNIVLLDEDFDARIMDFGLARLMTSSESNDSSFVNGDLGEIGYVAPEYSSTLVASTKGDAYSFGVVLLELATGLKPLDVTTADELCKGNLVDWVNQLSASGRIKDAIDKRLSGKDHDEDIVRFLRIACNCVVSRPKDRWSMYQVYESLKSMAEEHGFSEQYDEFPLLFGKPE 602
BLAST of XM_017386817.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5YJQ9 ((inactive LRR receptor-like serine/threonine-protein kinase BIR2 {ECO:0000313|RefSeq:XP_022740774.1}))
HSP 1 Score: 825.083 bits (2130), Expect = 0.000e+0
Identity = 400/590 (67.80%), Postives = 477/590 (80.85%), Query Frame = 0
Match: A0A6P5YJQ9 ((inactive LRR receptor-like serine/threonine-protein kinase BIR2 {ECO:0000313|RefSeq:XP_022740774.1}))
HSP 1 Score: 825.083 bits (2130), Expect = 0.000e+0
Identity = 400/590 (67.80%), Postives = 477/590 (80.85%), Query Frame = 0
Query: 10 LLLACFVISCIYTSVIAEDDVTCLQGFKDSIQDVDNKLFEWSFGNTTVGYICKYTGVTCWNDRENRVVSLELRELNLAGQLPKALQSCHNNLQTLVLAGNNFSGSIPDKICSWLPFLSTLDLSGNKFVGSIPASLADCTYLNNLILSDNQLSGEIPVQLTSLNRLKKFSVSNNALKGTVPSAFSKFDESDFSGNSGLCGGPLKKCGGLSKKNLAIIIAAGVLGAVGSLLLGFGLWWWC-LRSNRRKKGSGYGGEDSESWVEKLRAHKLVQVSLFQKPLVKVRLVDLMAATNNFDGASVIITARTGTTYKAVLPDGSALAIKRLSRCKLSERQFGFEMNRLGQLRHPNLTPLLGYCLVEDEKLLVYKYMSNGTLYSMLNGGNASELDWETRFRIGLGAARGLAWLHHGCYPSILHQNISSNMILLDEDFDARIMDVGLAKLMTYSDPNERGLVNGELGELGYVAPEYSSTMAASGKGDVYSLGVVFLELATGQRCLEVSGAEEGFKGNLVDWVNHLSVSGRIKDAIDKRLRGRKHDEDIEQFLRIACHCVETVPKDRWSMFKVYESLRIIAEEHGFSEQYDEFPLLFGKED 598
+LA + + S + EDD+ CL+G K+S+QD D KL W+F N +VG+ICK+ GV CWN+RENR++SLELRE+NL+GQLP++L+ C +LQTL L+ N SG+IP +IC+WLP+L LDLS N G IP L+ C YLNNLILS+N+LSG IP QL+ L RLKKFSV+NN L G +PSAF D++DFSGNS LCGGPL+KCG LSKKNLAIIIAAGV GA S+LLGFG+WWW LR RR+K GY G D SW E+LRAHKL QVSLFQKPLVKV+L DLMAATNNF+ ++II+ RTGTTYKAVLPDGSALAIKRL+ CKL E+QF EMNRLGQLRHPNLTPLLG+C+VE+EKL+VYK+MSNGTLYS+L+G A+ +DW TRFRIGLGAARGLAWLHHGC P L QNI SN+IL+DED DARIMD GL +LMT SD NE + G+LGE GYVAPEYSSTM AS KGDVY GVV LEL T Q+ LEV+ EEGFKGNLVDWVNHLS SGRIKDAIDK L G+ HDE+I QFL+IAC+C+ T PKDRWSM++VY+SL +AEE+GFSEQ+D+FPL+F ++D
Sbjct: 14 FVLAWMFLPGLVLSAVTEDDMKCLEGVKNSLQDPDEKLSLWTFNNNSVGFICKFVGVVCWNERENRLLSLELREMNLSGQLPQSLEYC-KSLQTLDLSANKISGTIPPQICTWLPYLVALDLSNNDLSGPIPPELSKCAYLNNLILSNNRLSGSIPYQLSGLVRLKKFSVANNDLTGAIPSAFENHDKADFSGNS-LCGGPLRKCGALSKKNLAIIIAAGVFGAAASMLLGFGVWWWYHLRWIRRRK-KGYIGGDDSSWAERLRAHKLTQVSLFQKPLVKVKLADLMAATNNFNAETIIISTRTGTTYKAVLPDGSALAIKRLTTCKLGEKQFRLEMNRLGQLRHPNLTPLLGFCVVEEEKLIVYKHMSNGTLYSLLHGSVAA-VDWPTRFRIGLGAARGLAWLHHGCRPPFLQQNICSNVILIDEDSDARIMDFGLTRLMTASDVNETSFMKGDLGEFGYVAPEYSSTMVASLKGDVYGFGVVLLELVTRQKPLEVNAGEEGFKGNLVDWVNHLSSSGRIKDAIDKALCGKGHDEEILQFLKIACNCMVTRPKDRWSMYQVYQSLNSMAEENGFSEQFDDFPLIFIQQD 599
BLAST of XM_017386817.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6P9E5 ((Inactive receptor kinase {ECO:0000313|EMBL:PSR87623.1}))
HSP 1 Score: 825.083 bits (2130), Expect = 0.000e+0
Identity = 404/594 (68.01%), Postives = 473/594 (79.63%), Query Frame = 0
Match: A0A2R6P9E5 ((Inactive receptor kinase {ECO:0000313|EMBL:PSR87623.1}))
HSP 1 Score: 825.083 bits (2130), Expect = 0.000e+0
Identity = 404/594 (68.01%), Postives = 473/594 (79.63%), Query Frame = 0
Query: 11 LLACFVISCIYTSVIAEDDVTCLQGFKDSIQDVDNKLFEWSFGNTTVGYICKYTGVTCWNDRENRVVSLELRELNLAGQLPKALQSCHNNLQTLVLAGNNFSGSIPDKICSWLPFLSTLDLSGNKFVGSIPASLADCTYLNNLILSDNQLSGEIPVQLTSLNRLKKFSVSNNALKGTVPSAFSKFDESDFSGNSGLCGGPLKKCGGLSKKNLAIIIAAGVLGAVGSLLLGFGLWWWCL-RSNRRKKGSGYGGEDSESWVEKLRAHKLVQVSLFQKPLVKVRLVDLMAATNNFDGASVIITARTGTTYKAVLPDGSALAIKRLSRCKLSERQFGFEMNRLGQLRHPNLTPLLGYCLVEDEKLLVYKYMSNGTLYSMLNGGNASELDWETRFRIGLGAARGLAWLHHGCYPSILHQNISSNMILLDEDFDARIMDVGLAKLMTYSDPNERGLVNGELGELGYVAPEYSSTMAASGKGDVYSLGVVFLELATGQRCLEVSGAEEGFKGNLVDWVNHLSVSGRIKDAIDKRLRGRKHDEDIEQFLRIACHCVETVPKDRWSMFKVYESLRIIAEEHGFSEQYDEFPLLFGKEDMDKVI 603
LL + C+ VI EDDV CLQG K+S+ D ++KL WSF N++VG+IC + G++CWND ENR+++L LRE+ L GQ+P ALQ C++ LQ L L+GN+ SGSIP +IC+WLP+L TLDLS N G IP LA C +LN LILSDN+LSG IP QL+SL RL KFSV+NN L GT+P+ + D DF GNSGLCG PL KCGGLSKKNLAIIIAAGV GA SLLLGFGLWWW +S RRK G G +D+ SW E+LRA+KLVQV+LFQKPLVKV+L DLMAATNNF ++II+ RTGTTYKAVLPDGSALAIKRL+ CKLSE+QF EM RLGQLRHPNL PLLG+C+VE+EKLLVYK+MS+GTL+S+L+ GN S LDW TRF IG GAA+GLAWLHHGC P IL QNISSN+ILLDEDFDARIMD GLA+LM SD NE VNG+LGE GYVAPE M AS +GDVY +GVV LELATGQ+ L+V AEEGFKGNLVDWVN LS SGRIKDAIDK L GR HDE+I QFL+IAC CV + PK+RWSM++VYESL+ IAE GFSEQYDEFPLLFG++D D +I
Sbjct: 11 LLLAVLFCCVVPLVICEDDVKCLQGVKNSLTDPESKLSSWSFMNSSVGFICNFVGISCWNDNENRLITLTLREMGLGGQIPDALQYCYS-LQNLDLSGNDLSGSIPSEICTWLPYLVTLDLSNNHLTGPIPVDLAKCLFLNKLILSDNKLSGNIPFQLSSLGRLNKFSVANNDLTGTIPAFLNGSDSEDFVGNSGLCGRPLGKCGGLSKKNLAIIIAAGVFGATASLLLGFGLWWWYFTKSGRRKTGYAVGRDDTGSWAERLRAYKLVQVTLFQKPLVKVKLADLMAATNNFSAENIIISTRTGTTYKAVLPDGSALAIKRLNTCKLSEKQFRLEMTRLGQLRHPNLAPLLGFCVVEEEKLLVYKHMSSGTLFSLLH-GNGSVLDWPTRFGIGFGAAKGLAWLHHGCQPPILQQNISSNVILLDEDFDARIMDFGLARLMMSSDVNETSFVNGDLGEFGYVAPE----MVASLQGDVYGIGVVLLELATGQKPLDVGNAEEGFKGNLVDWVNQLSSSGRIKDAIDKSLCGRGHDEEIVQFLKIACSCVVSRPKERWSMYQVYESLKSIAEGQGFSEQYDEFPLLFGRQDTDNLI 598
BLAST of XM_017386817.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3G3W8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 823.928 bits (2127), Expect = 0.000e+0
Identity = 391/594 (65.82%), Postives = 479/594 (80.64%), Query Frame = 0
Match: A0A1R3G3W8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 823.928 bits (2127), Expect = 0.000e+0
Identity = 391/594 (65.82%), Postives = 479/594 (80.64%), Query Frame = 0
Query: 6 LVKPLLLACFVISCIYTSVIAEDDVTCLQGFKDSIQDVDNKLFEWSFGNTTVGYICKYTGVTCWNDRENRVVSLELRELNLAGQLPKALQSCHNNLQTLVLAGNNFSGSIPDKICSWLPFLSTLDLSGNKFVGSIPASLADCTYLNNLILSDNQLSGEIPVQLTSLNRLKKFSVSNNALKGTVPSAFSKFDESDFSGNSGLCGGPLKKCGGLSKKNLAIIIAAGVLGAVGSLLLGFGLWWWC-LRSNRRKKGSGYGGEDSESWVEKLRAHKLVQVSLFQKPLVKVRLVDLMAATNNFDGASVIITARTGTTYKAVLPDGSALAIKRLSRCKLSERQFGFEMNRLGQLRHPNLTPLLGYCLVEDEKLLVYKYMSNGTLYSMLNGGNASELDWETRFRIGLGAARGLAWLHHGCYPSILHQNISSNMILLDEDFDARIMDVGLAKLMTYSDPNERGLVNGELGELGYVAPEYSSTMAASGKGDVYSLGVVFLELATGQRCLEVSGAEEGFKGNLVDWVNHLSVSGRIKDAIDKRLRGRKHDEDIEQFLRIACHCVETVPKDRWSMFKVYESLRIIAEEHGFSEQYDEFPLLFGKED 598
L+ +L A ++ + S + EDD+ CL+G K+S+ D D KL W+F N +VG+ICK+ GV+CWN+RENR++ LELR+++L+GQLP++L+ C + +QTL L+ N SG+IP ++C WLP+L TLDLS N GSIP L+ C YLNNLILS+N+LSG IP QL+ L+RLKKFSV+NN L G +PS+F+ D++DF+GN GLCGGPL KCGGLSKKNLAIIIAAGV GA GS+LLGFG+WWW LR RR+K G D SW E+LRAHKL QVSLFQKPLVKV+L DLMAATNNF+ ++I++ RTGTTYKAVLPDGSALAIKRL+ CKL E+QF +EMNRLGQLRHPNLTPLLG+CLVE+EKLLVYK+MSNGTLYS+L+ + + +DW TRFRIGLGAARGLAWLHHGC P L QNI SN++L+DEDFDARIMD GLA LMT SD NE VNG+LGE GY+APEYSSTM S KGD Y GVV LEL T Q+ E++ EEGFKGNLVDWVNHLS SGRIKD IDK L G+ HDE+I QFL+IAC+CV P+DRWSMF+VY+SL+ +AEEHGFSEQ+D+FPL+F +++
Sbjct: 15 LISLVLAAWVILPEVVLSAVTEDDMKCLEGVKNSLNDPDGKLSTWTFNNNSVGFICKFVGVSCWNERENRLLGLELRDMSLSGQLPESLKYCQS-MQTLDLSANKLSGTIPPQVCDWLPYLVTLDLSSNDLSGSIPPELSKCAYLNNLILSNNKLSGSIPYQLSGLDRLKKFSVANNDLTGAIPSSFAHHDKADFAGNDGLCGGPLGKCGGLSKKNLAIIIAAGVFGAAGSMLLGFGVWWWYHLRWIRRRKKGYLGRGDDSSWAERLRAHKLTQVSLFQKPLVKVKLADLMAATNNFNAENIIVSTRTGTTYKAVLPDGSALAIKRLTTCKLGEKQFRWEMNRLGQLRHPNLTPLLGFCLVEEEKLLVYKHMSNGTLYSLLHE-SVAPIDWPTRFRIGLGAARGLAWLHHGCQPPFLQQNICSNVVLVDEDFDARIMDFGLAGLMTSSDVNETSFVNGDLGEFGYIAPEYSSTMVPSLKGDAYGFGVVLLELVTRQKPQEINAGEEGFKGNLVDWVNHLSNSGRIKDCIDKALCGKGHDEEISQFLKIACNCVVARPRDRWSMFQVYQSLKNMAEEHGFSEQFDDFPLIFKQDN 606
BLAST of XM_017386817.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834GCQ9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7128877.1}))
HSP 1 Score: 822.002 bits (2122), Expect = 0.000e+0
Identity = 408/596 (68.46%), Postives = 478/596 (80.20%), Query Frame = 0
Match: A0A834GCQ9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7128877.1}))
HSP 1 Score: 822.002 bits (2122), Expect = 0.000e+0
Identity = 408/596 (68.46%), Postives = 478/596 (80.20%), Query Frame = 0
Query: 10 LLLACFVISCIYTSVIAEDDVTCLQGFKDSIQDVDNKLFEWSFGNTTVGYICKYTGVTCWNDRENRVVSLELRELNLAGQLPKALQSCHNNLQTLVLAGNNFSGSIPDKICSWLPFLSTLDLSGNKFVGSIPASLADCTYLNNLILSDNQLSGEIPVQLTSLNRLKKFSVSNNALKGTVPSAFSKFDESDFSGNSGLCGGPLKKCGGLSKKNLAIIIAAGVLGAVGSLLLGFGLWWWCL-RSNRRKKGS-GYGGEDSESWVEKLRAHKLVQVSLFQKPLVKVRLVDLMAATNNFDGASVIITARTGTTYKAVLPDGSALAIKRLSRCKLSERQFGFEMNRLGQLRHPNLTPLLGYCLVEDEKLLVYKYMSNGTLYSMLNGGNASELDWETRFRIGLGAARGLAWLHHGCYPSILHQNISSNMILLDEDFDARIMDVGLAKLMTYSDPNERGLVNGELGELGYVAPEYSSTMAASGKGDVYSLGVVFLELATGQRCLEVSGAEEGFKGNLVDWVNHLSVSGRIKDAIDKRLRGRKHDEDIEQFLRIACHCVETVPKDRWSMFKVYESLRIIAEEHGFSEQYDEFPLLFGKEDMDKVI 603
+LLA + + V +EDDV CLQG K ++ + + L WSF N+TVG+IC + G TCWNDRENR++ L+L +++L GQ+P ALQ CH+ LQ L L+GNN +G IPD IC WLP+L TLDLS N+ G IP LA+CT+LN L+LSDN LSG IP QL SL RLK SV+NN L GT+PS S +D S F GNSGLCG PL KCGGLSKK+L IIIAAGV GA SLLLGFG+WW+ RS RR+K G GG+ SW ++LRA+KLVQVSLFQKPLVKV+L DLMAATNNF ++II+ RTGTTYKA+LPDGSALAIKRL+ CKLSE+QF EMNRLGQLRHPNL PLLG+C+VE+EKLLVYK+MS+GTLYSMLNG N SELDW TRFRIG GAARGLAWLHHGC P ILHQNISSN+ILLDEDFDARI+D GLA+LMT + NE VNG+LGE GY+APEYSSTM AS KGDVY GVV LELATG + L+VS A+EGFKGNLVDWV+ LS SGR+KDAIDKRL GR +DE+I QFLRIA HCV + PKDRWSMF+VYESL+ IAEE GFSEQYDEFPLLFG++D + ++
Sbjct: 11 VLLALVFCCAVVSPVFSEDDVPCLQGVKKAVAN-PSALNSWSFANSTVGFICSFVGATCWNDRENRLIGLDLGDMSLGGQVPSALQYCHS-LQNLDLSGNNLTGPIPDDICVWLPYLVTLDLSNNQLTGPIPDDLANCTFLNKLVLSDNMLSGFIPSQLASLGRLKAISVANNGLYGTIPSGLSSYDSSSFEGNSGLCGAPLGKCGGLSKKSLTIIIAAGVFGAAASLLLGFGIWWFYFTRSTRRRKSEYGVGGDGDGSWADRLRAYKLVQVSLFQKPLVKVKLADLMAATNNFSVDNIIISTRTGTTYKAILPDGSALAIKRLNTCKLSEKQFRMEMNRLGQLRHPNLVPLLGFCVVEEEKLLVYKHMSSGTLYSMLNG-NPSELDWPTRFRIGFGAARGLAWLHHGCQPPILHQNISSNVILLDEDFDARIIDFGLARLMTSDEKNESSFVNGDLGEFGYIAPEYSSTMVASLKGDVYGFGVVLLELATGLKPLDVSNADEGFKGNLVDWVSQLSSSGRMKDAIDKRLCGRGNDEEIVQFLRIANHCVISRPKDRWSMFQVYESLKSIAEERGFSEQYDEFPLLFGRQDTNNLM 603
BLAST of XM_017386817.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061EED9 ((Leucine-rich repeat protein kinase family protein {ECO:0000313|EMBL:EOY03291.1}))
HSP 1 Score: 821.231 bits (2120), Expect = 0.000e+0
Identity = 393/598 (65.72%), Postives = 480/598 (80.27%), Query Frame = 0
Match: A0A061EED9 ((Leucine-rich repeat protein kinase family protein {ECO:0000313|EMBL:EOY03291.1}))
HSP 1 Score: 821.231 bits (2120), Expect = 0.000e+0
Identity = 393/598 (65.72%), Postives = 480/598 (80.27%), Query Frame = 0
Query: 11 LLACFVISCIYT-----SVIAEDDVTCLQGFKDSIQDVDNKLFEWSFGNTTVGYICKYTGVTCWNDRENRVVSLELRELNLAGQLPKALQSCHNNLQTLVLAGNNFSGSIPDKICSWLPFLSTLDLSGNKFVGSIPASLADCTYLNNLILSDNQLSGEIPVQLTSLNRLKKFSVSNNALKGTVPSAFSKFDESDFSGNSGLCGGPLKKCGGLSKKNLAIIIAAGVLGAVGSLLLGFGLWWWC-LRSNRRKKGSGYGGEDSESWVEKLRAHKLVQVSLFQKPLVKVRLVDLMAATNNFDGASVIITARTGTTYKAVLPDGSALAIKRLSRCKLSERQFGFEMNRLGQLRHPNLTPLLGYCLVEDEKLLVYKYMSNGTLYSMLNGGNASELDWETRFRIGLGAARGLAWLHHGCYPSILHQNISSNMILLDEDFDARIMDVGLAKLMTYSDPNERGLVNGELGELGYVAPEYSSTMAASGKGDVYSLGVVFLELATGQRCLEVSGAEEGFKGNLVDWVNHLSVSGRIKDAIDKRLRGRKHDEDIEQFLRIACHCVETVPKDRWSMFKVYESLRIIAEEHGFSEQYDEFPLLFGKEDMDKV 602
+L FV++ I+ S + EDD+ CL+G K+S++D D KL W+F N +VG+ICK+ GVTCWN+RENR++SL+LR++ L+GQLP++L+ C + LQTL L+ N SG+IP +IC+WLP+L TLDLS N GSIP L+ C YLN L LS+N+LSG IP QL++L RLKKFSV+NN L G +PS+F D++DF+GNSGLCGG L KCGGLSKKNLAIIIAAGV GA S+LLGFG+WWW LRS RR+K +G D W E+LRA+KL QVSLFQKPLVKV+L DLMAATNNF+ ++II+ RTGTTYKAVLPDGSALAIKRL+ CKL E+QF +EMNRLGQLRHPNL PLLG+C+VE+EKLLVYK+MSNGTLYS+L+G A+ +DW TRFRIGLGAARGLAWLHHGC P L QNI SN+I +DEDFDARIMD GLA LMT SD NE NG+LGE GY+APEYSSTM + KGDVY GVV LEL T Q+ LE++ EEG+KGNLVDWVNHLS SGRIKDAID LRG+ HDE+I QFL+IAC+CV PKDRWSM++VY+SL+ +AEE GFSEQ+D+FPL+F K+D + +
Sbjct: 11 ILFSFVLAWIFLPGFVLSAVTEDDMKCLEGVKNSLKDPDRKLSSWTFNNNSVGFICKFVGVTCWNERENRLLSLQLRDMKLSGQLPESLEYCQS-LQTLDLSANKLSGTIPPQICTWLPYLVTLDLSSNDLSGSIPPELSKCAYLNYLTLSNNRLSGSIPNQLSALGRLKKFSVANNDLTGAIPSSFENHDKADFAGNSGLCGGNLGKCGGLSKKNLAIIIAAGVFGAAASMLLGFGVWWWYHLRSMRRRKKGYFGRGDDSGWAERLRAYKLTQVSLFQKPLVKVKLADLMAATNNFNAENIIISTRTGTTYKAVLPDGSALAIKRLTTCKLGEKQFRWEMNRLGQLRHPNLAPLLGFCIVEEEKLLVYKHMSNGTLYSLLHGSVAA-IDWPTRFRIGLGAARGLAWLHHGCQPPFLQQNICSNVIFVDEDFDARIMDFGLAGLMTSSDVNETSFENGDLGEFGYIAPEYSSTMVTTLKGDVYGFGVVLLELVTRQKPLEINAGEEGYKGNLVDWVNHLSSSGRIKDAIDNSLRGKGHDEEILQFLKIACNCVVARPKDRWSMYQVYQSLKSMAEELGFSEQFDDFPLIFSKQDNESM 606
BLAST of XM_017386817.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9EKS6 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 820.846 bits (2119), Expect = 0.000e+0
Identity = 397/592 (67.06%), Postives = 473/592 (79.90%), Query Frame = 0
Match: A0A2N9EKS6 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 820.846 bits (2119), Expect = 0.000e+0
Identity = 397/592 (67.06%), Postives = 473/592 (79.90%), Query Frame = 0
Query: 10 LLLACFVISCIYTSVIAEDDVTCLQGFKDSIQDVDNKLFEWSFGNTTVGYICKYTGVTCWNDRENRVVSLELRELNLAGQLPKALQSCHNNLQTLVLAGNNFSGSIPDKICSWLPFLSTLDLSGNKFVGSIPASLADCTYLNNLILSDNQLSGEIPVQLTSLNRLKKFSVSNNALKGTVPSAFSKFDESDFSGNSGLCGGPLKKCGGLSKKNLAIIIAAGVLGAVGSLLLGFGLWWWC-LRSNRRKKGSGYGGEDSESWVEKLRAHKLVQVSLFQKPLVKVRLVDLMAATNNFDGASVIITARTGTTYKAVLPDGSALAIKRLSRCKLSERQFGFEMNRLGQLRHPNLTPLLGYCLVEDEKLLVYKYMSNGTLYSMLNGGNASELDWETRFRIGLGAARGLAWLHHGCYPSILHQNISSNMILLDEDFDARIMDVGLAKLMTYSDPNERGLVNGELGELGYVAPEYSSTMAASGKGDVYSLGVVFLELATGQRCLEVSGAEEGFKGNLVDWVNHLSVSGRIKDAIDKRLRGRKHDEDIEQFLRIACHCVETVPKDRWSMFKVYESLRIIAEEHGFSEQYDEFPLLFGKEDMD 600
L LAC + +C + EDDV CL+G K S+ D KL WSF NT+VG ICK+ GVTCWNDRENR+ +ELRE+ L+G +PK ++ C +LQ L L+GNN +GSI + C+WLPFL TLDLS N+ +G IP LA C+YLNNL+LSDN+L G IP +LTSL+RLKKFSV+NN L G +P + +F + F GNSGLCGGPL KCGGLSKKNLAIIIAAGV GA GSL+LGFG+WWW LR N+R+K GYG + W E+LRAHKLVQVSLFQKPLVKV+L DLMAATNNF ++I++ RTGTTYKAVLPDGS LAIKRL+ CKL E+QF EMNRLGQLRHPNL PLLG+C+VEDEKLLVYK+MSNGTLYS+L+GG ELDW TRF IGLGAARGLAWLHHGC+P I+HQNI SN+I +DEDFDARI+D GLA+LM +D NE VNG+LGELGYVAPEY+STM AS KGD Y GVV LEL TGQ+ LEVS E+GFKG LVDWVN LS SGRIKDAI K L G++HDE+I QFL+IAC+CV + P+DRWSM++VY+SL+ ++++ GFSEQ DEFPLLFGK + D
Sbjct: 20 LFLACTLTACY---AVVEDDVRCLEGLKSSLNDPQGKLSSWSFKNTSVGSICKFVGVTCWNDRENRIFGIELREMKLSGTVPKVVEYC-GSLQILDLSGNNLNGSISNDTCTWLPFLVTLDLSHNELLGPIPTQLAKCSYLNNLMLSDNKLFGTIPYELTSLDRLKKFSVANNQLSGRIPGSLDRFGKEAFDGNSGLCGGPLGKCGGLSKKNLAIIIAAGVFGAAGSLILGFGVWWWYHLRLNKRRK-RGYGVRGGDDWAERLRAHKLVQVSLFQKPLVKVKLADLMAATNNFSPENIIVSTRTGTTYKAVLPDGSVLAIKRLNTCKLGEKQFRLEMNRLGQLRHPNLAPLLGFCVVEDEKLLVYKHMSNGTLYSLLHGG-GEELDWPTRFTIGLGAARGLAWLHHGCHPPIMHQNICSNVIQVDEDFDARILDFGLARLMNAADFNEASFVNGDLGELGYVAPEYTSTMVASLKGDTYGFGVVLLELVTGQKPLEVSNVEDGFKGKLVDWVNQLSSSGRIKDAISKDLIGKRHDEEILQFLKIACNCVVSRPRDRWSMYQVYQSLKSMSKDRGFSEQEDEFPLLFGKPEND 605
| Match Name | Stats | Description |
|---|---|---|
| A0A4S4CX04 | E-Value: 0.000e+0, PID: 70.69 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A6P6VHE1 | E-Value: 0.000e+0, PID: 67.77 | (LOW QUALITY PROTEIN: inactive LRR receptor-like s... [more] |
| A0A2R6RK91 | E-Value: 0.000e+0, PID: 68.40 | (Inactive LRR receptor-like serine/threonine-prote... [more] |
| A0A6I9TJ70 | E-Value: 0.000e+0, PID: 69.36 | (inactive LRR receptor-like serine/threonine-prote... [more] |
| A0A6P5YJQ9 | E-Value: 0.000e+0, PID: 67.80 | (inactive LRR receptor-like serine/threonine-prote... [more] |
| A0A2R6P9E5 | E-Value: 0.000e+0, PID: 68.01 | (Inactive receptor kinase {ECO:0000313|EMBL:PSR876... [more] |
| A0A1R3G3W8 | E-Value: 0.000e+0, PID: 65.82 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A834GCQ9 | E-Value: 0.000e+0, PID: 68.46 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7128... [more] |
| A0A061EED9 | E-Value: 0.000e+0, PID: 65.72 | (Leucine-rich repeat protein kinase family protein... [more] |
| A0A2N9EKS6 | E-Value: 0.000e+0, PID: 67.06 | Protein kinase domain-containing protein {ECO:0000... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |