Resource Type:
Polypeptide
Name:
XM_017384993.1
Identifier:
XM_017384993.1-protein
Sequence:
MANQGKEEKIDYFYMLPEGCLAHSISYTTPVDACRLRLVASSVRVIADSD
AVWERFLPSDYQQLISRAVPDDQGLLHYMLASASKKEFYIFLCDQPLVID
NGALSFSLDKPTAKKCFMIAASELQITWGDSPLYWSWKSDPESRFTKVIE
LMDVCWFEICGKIDTSLLSPDTAYTTFLVYKASGDLSGFKDQPIEISVGI
SGEDSMNRIVYLDHSVEVQRGTTTLPRRRGLFHRFRAKQQRPQAAVSQVA
ENRYPVIRKDGWLEVELAEYYNKDLENTELEISLREVKKLNWKRGLVIQG
IEIRPKVVT
Sequence Length:
309
Sequence Checksum:
2f63bae2e8006b88606fcb1b1cd0daac
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017384993.1, derives from mRNA, XM_017384993.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017384993.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017384993.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BDD5 ((Putative F-box protein PP2-B10-like {ECO:0000313|EMBL:MPA65433.1}) (2.4.1.207 {ECO:0000313|EMBL:MPA65433.1}))
HSP 1 Score: 311.612 bits (797), Expect = 1.569e-103
Identity = 157/296 (53.04%), Postives = 201/296 (67.91%), Query Frame = 0
Match: A0A5B7BDD5 ((Putative F-box protein PP2-B10-like {ECO:0000313|EMBL:MPA65433.1}) (2.4.1.207 {ECO:0000313|EMBL:MPA65433.1}))
HSP 1 Score: 311.612 bits (797), Expect = 1.569e-103
Identity = 157/296 (53.04%), Postives = 201/296 (67.91%), Query Frame = 0
Query: 13 FYMLPEGCLAHSISYTTPVDACRLRLVASSVRVIADSDAVWERFLPSDYQQLISRAVPDDQGLLHYMLASASKKEFYIFLCDQPLVIDNGALSFSLDKPTAKKCFMIAASELQITWGDSPLYWSWKSDPESRFTKVIELMDVCWFEICGKIDTSLLSPDTAYTTFLVYKASGDLSGFKDQPIEISVGISGEDSMNRIVYL--DHSVEVQRGTTTLPRRRGLFHRFRAKQQRPQAAVSQVAENRYPVIRKDGWLEVELAEYYNKDLENTELEISLREVKKLNWKRGLVIQGIEIRPK 306
FY+LPEGC+A+ +S T+P DACRL LVAS+ R A+SDAVWERFLPSDY +++RAV D L +M SKK+ Y+ LCD PL+ID G SFSL+K + +KC+M+AA +L I WGD+P +W W S PESRFT+V L+DVCW EICGKI T +LSPDT Y +LV+K++ GF+ QP+E SVG SG R YL D + +PRR GLF+R R Q +V + + + P R DGW+EVEL EY NK E+ EL++SL EVK WK GL++QGIEIRPK
Sbjct: 15 FYLLPEGCIANVLSLTSPRDACRLSLVASTFRSAAESDAVWERFLPSDYHGILARAV-DSSPPLVFM----SKKDLYLRLCDHPLIIDKGTKSFSLEKWSGRKCYMLAARDLTIVWGDTPKFWRWISLPESRFTEVAVLIDVCWLEICGKIKTCMLSPDTTYAAYLVFKSTAGAYGFQYQPVEGSVGTSGGKGETRTFYLVPDGGQGQRHRNQLIPRRIGLFNR-AFNMLRQQVSVPRESNGQNPKERGDGWMEVELGEYVNKGGEDGELKMSLMEVKGGGWKSGLIVQGIEIRPK 304
BLAST of XM_017384993.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7VL36 ((F-box protein PP2-B10-like {ECO:0000313|RefSeq:XP_009763054.1}))
HSP 1 Score: 307.375 bits (786), Expect = 7.271e-102
Identity = 150/293 (51.19%), Postives = 196/293 (66.89%), Query Frame = 0
Match: A0A1U7VL36 ((F-box protein PP2-B10-like {ECO:0000313|RefSeq:XP_009763054.1}))
HSP 1 Score: 307.375 bits (786), Expect = 7.271e-102
Identity = 150/293 (51.19%), Postives = 196/293 (66.89%), Query Frame = 0
Query: 16 LPEGCLAHSISYTTPVDACRLRLVASSVRVIADSDAVWERFLPSDYQQLISRAV--PDDQGLLHYMLASASKKEFYIFLCDQPLVIDNGALSFSLDKPTAKKCFMIAASELQITWGDSPLYWSWKSDPESRFTKVIELMDVCWFEICGKIDTSLLSPDTAYTTFLVYKASGDLSGFKDQPIEISVGISGEDSMNRIVYLDHSVEVQRGTTTLPRRRGLFHRFRAKQQRPQAAVSQVAENRYPVIRKDGWLEVELAEYYNKDLENTELEISLREVKKLNWKRGLVIQGIEIRPK 306
LPEGCLA+++S T+P DACRL LVAS+ R A+SDAVWERFLP DY +ISR++ PD LA SKKE Y+ LCD P++ID G SFSL+K + KKC+M+AA L+I W D+P YW W S PESRF++V EL+DVCWF++ GKI+T++LSPDT Y +LV+ GF +QP E SVGI+G + + VYLD + +PRR G+F A R + E RYP R DGWLE+EL E++ K + ELE+SL E+K NWK GL+++GI+IRPK
Sbjct: 15 LPEGCLANALSLTSPKDACRLSLVASTFRSAAESDAVWERFLPPDYGDIISRSIDGPDS-------LAVGSKKELYLHLCDHPILIDGGTKSFSLEKWSGKKCYMLAARSLKIVWADTPRYWRWISLPESRFSEVAELLDVCWFDLSGKINTNMLSPDTRYGAYLVFTTKSRTYGFGNQPAESSVGITGHERETQTVYLDPQGGRRHRYQVVPRRLGIFTHHMAHILRHEVDTPYEPEGRYPKQRSDGWLEIELGEFFVKRGQEAELEMSLTELKGGNWKSGLIVEGIDIRPK 300
BLAST of XM_017384993.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3XS60 ((F-box protein PP2-B10-like {ECO:0000313|RefSeq:XP_016442783.1}))
HSP 1 Score: 306.99 bits (785), Expect = 8.378e-102
Identity = 150/293 (51.19%), Postives = 196/293 (66.89%), Query Frame = 0
Match: A0A1S3XS60 ((F-box protein PP2-B10-like {ECO:0000313|RefSeq:XP_016442783.1}))
HSP 1 Score: 306.99 bits (785), Expect = 8.378e-102
Identity = 150/293 (51.19%), Postives = 196/293 (66.89%), Query Frame = 0
Query: 16 LPEGCLAHSISYTTPVDACRLRLVASSVRVIADSDAVWERFLPSDYQQLISRAV--PDDQGLLHYMLASASKKEFYIFLCDQPLVIDNGALSFSLDKPTAKKCFMIAASELQITWGDSPLYWSWKSDPESRFTKVIELMDVCWFEICGKIDTSLLSPDTAYTTFLVYKASGDLSGFKDQPIEISVGISGEDSMNRIVYLDHSVEVQRGTTTLPRRRGLFHRFRAKQQRPQAAVSQVAENRYPVIRKDGWLEVELAEYYNKDLENTELEISLREVKKLNWKRGLVIQGIEIRPK 306
LPEGCLA+++S T+P DACRL LVAS+ R A+SDAVWERFLP DY +ISR++ PD LA SKKE Y+ LCD P++ID G SFSL+K + KKC+M+AA L+I W D+P YW W S PESRF++V EL+DVCWF++ GKI+T++LSPDT Y +LV+ GF +QP E SVGI+G + + VYLD + +PRR G+F A R + E RYP R DGWLE+EL E++ K + ELE+SL E+K NWK GL+++GI+IRPK
Sbjct: 15 LPEGCLANALSLTSPKDACRLSLVASTFRSAAESDAVWERFLPPDYGDIISRSIDGPDS-------LAVGSKKELYLHLCDHPILIDGGTKSFSLEKWSGKKCYMLAARSLKIVWADTPRYWRWISLPESRFSEVAELLDVCWFDLSGKINTNMLSPDTRYGAYLVFTTKSRTYGFGNQPAESSVGITGHERETQTVYLDPQGGRRHRYQVVPRRLGIFTHHMAHILRHEVDTPYEPEGRYPKQRSDGWLEIELGEFFVKRGQEAELEMSLTELKGGNWKSGLIVEGIDIRPK 300
BLAST of XM_017384993.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B8U8 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 306.99 bits (785), Expect = 1.177e-101
Identity = 152/296 (51.35%), Postives = 196/296 (66.22%), Query Frame = 0
Match: A0A5J5B8U8 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 306.99 bits (785), Expect = 1.177e-101
Identity = 152/296 (51.35%), Postives = 196/296 (66.22%), Query Frame = 0
Query: 13 FYMLPEGCLAHSISYTTPVDACRLRLVASSVRVIADSDAVWERFLPSDYQQLISRAVPDDQGLLHYMLASASKKEFYIFLCDQPLVIDNGALSFSLDKPTAKKCFMIAASELQITWGDSPLYWSWKSDPESRFTKVIELMDVCWFEICGKIDTSLLSPDTAYTTFLVYKASGDLSGFKDQPIEISVGISGEDSMNRIVYLDHSVEVQRGTTTLPRRRGLFHRFRAKQQRPQAAVSQVAENRYPVIRKDGWLEVELAEYYNK--DLENTELEISLREVKKLNWKRGLVIQGIEIRPK 306
Y LPEGC+A+ +S T+P DACRL LVAS+ R A+SDAVW RFLPSDY ++ RAV Q L+ SKK+ Y LCD PL+ID G SFSL+K + KKC+M+AA +L I WGD+P+YW W S ESRF +V EL++VCW EICGKI T LLSPDT Y +LV+K+ GF+ QP+E+SV I G + + V+LD +PRR GLF+R ++ ++ +YP R DGW+E+EL EY+NK D E+ ELE+SL EVK WK GLV++GIEIRPK
Sbjct: 14 LYELPEGCIANVLSLTSPRDACRLSLVASTFRSAAESDAVWGRFLPSDYHDILGRAVDSSQPLVF-----TSKKDLYFRLCDHPLIIDKGTKSFSLEKWSGKKCYMLAAKDLAIVWGDTPMYWRWTSQRESRFKEVAELINVCWLEICGKIATCLLSPDTTYAAYLVFKSLTGAYGFEYQPVEVSVRIKGGEGETQNVFLDPDGGQMHRYQIIPRRIGLFNRGFNMLRQQVTVPRDISNGQYPKQRGDGWMEIELGEYFNKGGDGEDGELEMSLMEVKGGGWKSGLVVEGIEIRPK 304
BLAST of XM_017384993.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834GH41 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7131781.1}))
HSP 1 Score: 302.368 bits (773), Expect = 6.218e-100
Identity = 147/301 (48.84%), Postives = 206/301 (68.44%), Query Frame = 0
Match: A0A834GH41 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7131781.1}))
HSP 1 Score: 302.368 bits (773), Expect = 6.218e-100
Identity = 147/301 (48.84%), Postives = 206/301 (68.44%), Query Frame = 0
Query: 15 MLPEGCLAHSISYTTPVDACRLRLVASSVRVIADSDAVWERFLPSDYQQLISRAVPDDQGLLHYMLAS-ASKKEFYIFLCDQPLVIDNGALSFSLDKPTAKKCFMIAASELQITWGDSPLYWSWKSDPESRFTKVIELMDVCWFEICGKIDTSLLSPDTAYTTFLVYKASGDLSGFKDQPIEISVGISGEDSMNRIVYLDHSVEVQRGTTTLPR----RRGLFHRFRAKQQRPQAAVSQVAENRYPVIRKDGWLEVELAEYYNK--DLENTELEISLREVKKLNWKRGLVIQGIEIRPKVV 308
+LPEGC+A+ +S T+P DACRL +V S+ + +SDAVWERFLPS Y+ +I+RAV H +S ASKK+ Y++LCD PL+ID G SFSL+K + K C+M+AA L I WGD+P YW W S PESRF++V EL++VCW EICGKI+TS+LSP+T Y F V+K++ GF+ QP+E++VG+SG + + VYLD + +PR RRG R +Q+ + + +YP +R DGW+E+E+ EY+NK E+ ELE+S+ EV++ +WK GL++QGIEIRPKVV
Sbjct: 6 VLPEGCIANVVSLTSPQDACRLAVVGSTFKSAVESDAVWERFLPSHYKDIITRAVDFPS---HTPSSSFASKKQLYLWLCDHPLLIDQGTKSFSLEKSSGKMCYMLAARNLSIVWGDTPSYWRWISIPESRFSEVAELINVCWLEICGKINTSMLSPNTTYAAFFVFKSTAGACGFEYQPVEVAVGVSGSERETQSVYLDPERGQRLQYQIVPRNPVFRRGFSIGNRWRQRTTSVLNGESCDRKYPKVRGDGWMEIEMGEYFNKGGGGEDKELEMSVMEVERGDWKSGLIVQGIEIRPKVV 303
BLAST of XM_017384993.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314LFJ9 ((F-box protein {ECO:0000313|EMBL:OIT39799.1}))
HSP 1 Score: 300.056 bits (767), Expect = 4.186e-99
Identity = 146/293 (49.83%), Postives = 194/293 (66.21%), Query Frame = 0
Match: A0A314LFJ9 ((F-box protein {ECO:0000313|EMBL:OIT39799.1}))
HSP 1 Score: 300.056 bits (767), Expect = 4.186e-99
Identity = 146/293 (49.83%), Postives = 194/293 (66.21%), Query Frame = 0
Query: 16 LPEGCLAHSISYTTPVDACRLRLVASSVRVIADSDAVWERFLPSDYQQLISRAV--PDDQGLLHYMLASASKKEFYIFLCDQPLVIDNGALSFSLDKPTAKKCFMIAASELQITWGDSPLYWSWKSDPESRFTKVIELMDVCWFEICGKIDTSLLSPDTAYTTFLVYKASGDLSGFKDQPIEISVGISGEDSMNRIVYLDHSVEVQRGTTTLPRRRGLFHRFRAKQQRPQAAVSQVAENRYPVIRKDGWLEVELAEYYNKDLENTELEISLREVKKLNWKRGLVIQGIEIRPK 306
LPEGC+A+++S T+P DACRL LV S+ R A+SDAVWERFLP DY +ISR++ PD L ASKKE Y+ LCD P++ID G SFSL+K + KKC+M+AA L+I W D+P YW W S PESRF +V EL+DVCWF++ GKI+T++LSPDT Y +LV+ GF +QP E SVGI+G + + VYLD + +PRR G+F A R + E RYP R DGW+E+EL E++ K + E+E+SL E+K NWK GL+++GI+IRPK
Sbjct: 15 LPEGCIANALSLTSPKDACRLSLVDSTFRSAAESDAVWERFLPPDYGDIISRSINGPDS-------LPVASKKELYLHLCDHPILIDGGTKSFSLEKWSGKKCYMLAARSLKIVWADTPRYWRWISLPESRFPEVAELLDVCWFDLSGKINTNMLSPDTRYGAYLVFTTKSRTYGFGNQPAESSVGITGHERETQTVYLDPQGGRRHRYQVVPRRLGIFTHHMAHILRHEVDTPYEPEGRYPKQRSDGWMEIELGEFFVKRGQEAEVEMSLTELKGGNWKSGLIVEGIDIRPK 300
BLAST of XM_017384993.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DAL7 ((SKP1 interacting partner 3 {ECO:0000313|EMBL:GFS30146.1}))
HSP 1 Score: 298.901 bits (764), Expect = 9.747e-99
Identity = 144/295 (48.81%), Postives = 198/295 (67.12%), Query Frame = 0
Match: A0A7J0DAL7 ((SKP1 interacting partner 3 {ECO:0000313|EMBL:GFS30146.1}))
HSP 1 Score: 298.901 bits (764), Expect = 9.747e-99
Identity = 144/295 (48.81%), Postives = 198/295 (67.12%), Query Frame = 0
Query: 16 LPEGCLAHSISYTTPVDACRLRLVASSVRVIADSDAVWERFLPSDYQQLISRAVPDDQGLLHYMLASASKKEFYIFLCDQPLVIDNGALSFSLDKPTAKKCFMIAASELQITWGDSPLYWSWKSDPESRFTKVIELMDVCWFEICGKIDTSLLSPDTAYTTFLVYKASGDLSGFKDQPIEISVGISGEDSMNRIVYLDHSVEVQRGTTTLPRRRGLFHRFRAKQQ-RPQAAVSQVAENRYPVIRKDGWLEVELAEYYNKDLENTELEISLREVKKLNWKRGLVIQGIEIRPKVVT 309
LPEGC+A+ +S T+P +ACR+ +V S+ R A+SDAVWE+FLP DY +++RAV SKK+ Y +L D PL+IDN SF L+K + ++C+M+AA L I WGD+P YW W S PESRF +V EL+ VCW EI GKI+TS+LSP T Y +LV+K++ GF+ QP +SVGISG +S R V+LD + +PRR +F+R A RP +S+ +E++YP +R DGW+E+EL EY+NK E++E+E+SL EV +WK GLV+QGIEIRPK T
Sbjct: 5 LPEGCIANVVSLTSPQEACRVSMVGSTFRSAAESDAVWEKFLPRDYDDIVARAVAPPPRF-------DSKKQLYFWLSDHPLIIDNATKSFWLEKRSGRRCYMLAARNLTIVWGDTPSYWRWTSLPESRFPEVAELVSVCWLEIRGKINTSVLSPSTTYAAYLVFKSTASTYGFQYQPAVVSVGISGGESETRNVFLDPEGGQRMRYQIMPRRIRIFNRTLASNMFRPHTCISRESEHQYPKVRGDGWMEIELGEYFNKGGEDSEMEMSLMEVNGGDWKSGLVVQGIEIRPKEAT 292
BLAST of XM_017384993.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2WUS6 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 299.671 bits (766), Expect = 1.049e-98
Identity = 146/296 (49.32%), Postives = 199/296 (67.23%), Query Frame = 0
Match: A0A2G2WUS6 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 299.671 bits (766), Expect = 1.049e-98
Identity = 146/296 (49.32%), Postives = 199/296 (67.23%), Query Frame = 0
Query: 14 YMLPEGCLAHSISYTTPVDACRLRLVASSVRVIADSDAVWERFLPSDYQQLISRAVPDDQGLLHYMLASASKKEFYIFLCDQPLVIDNGALSFSLDKPTAKKCFMIAASELQITWGDSPLYWSWKSDPESRFTKVIELMDVCWFEICGKIDTSLLSPDTAYTTFLVYKASGDLSGFKDQPIEISVGISGEDSMNRIVYLDHSVEVQRGTTTLPRRRGLFHRFR---AKQQRPQAAVSQVAENRYPVIRKDGWLEVELAEYYNKDLENTELEISLREVKKLNWKRGLVIQGIEIRPK 306
Y LPEGC+A+ +S T+P DACRL +VA+ R A+SDAVW RFLP+DY +I R++ + G + + SKKE +++LCD PL ID G+ SFSL+K + KKC+M+AA L I W D+P YW W S PESRF++V EL+DVCW +I GKI+TS+LSPDT Y +LV+ GF Q E +VGISG + +IV+LD + +PRR G F++ ++ P + S+ A+ RYP R DGW+EVEL E++ K ++ ELE+SL EVK+ NWK GLV++GIEIRPK
Sbjct: 29 YALPEGCIANVLSLTSPRDACRLSVVATIFRSAAESDAVWNRFLPTDYCDIIPRSINGEPGSISF----KSKKELFLYLCDHPLFIDGGSKSFSLEKGSGKKCYMLAARSLAIVWADTPRYWRWMSLPESRFSEVAELLDVCWLDISGKINTSMLSPDTNYAAYLVFTTKSRTYGFDHQSAEGAVGISGHEKNTQIVFLDPEAARRHMYQIVPRRTGFFNQMADILRREVNPPPSESE-AQARYPQQRSDGWIEVELGEFFVKRGQDVELEMSLMEVKEGNWKSGLVVEGIEIRPK 319
BLAST of XM_017384993.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8GRA8 ((putative F-box protein PP2-B12 {ECO:0000313|RefSeq:XP_016573817.1}))
HSP 1 Score: 299.671 bits (766), Expect = 1.262e-98
Identity = 145/296 (48.99%), Postives = 199/296 (67.23%), Query Frame = 0
Match: A0A1U8GRA8 ((putative F-box protein PP2-B12 {ECO:0000313|RefSeq:XP_016573817.1}))
HSP 1 Score: 299.671 bits (766), Expect = 1.262e-98
Identity = 145/296 (48.99%), Postives = 199/296 (67.23%), Query Frame = 0
Query: 14 YMLPEGCLAHSISYTTPVDACRLRLVASSVRVIADSDAVWERFLPSDYQQLISRAVPDDQGLLHYMLASASKKEFYIFLCDQPLVIDNGALSFSLDKPTAKKCFMIAASELQITWGDSPLYWSWKSDPESRFTKVIELMDVCWFEICGKIDTSLLSPDTAYTTFLVYKASGDLSGFKDQPIEISVGISGEDSMNRIVYLDHSVEVQRGTTTLPRRRGLFHRFR---AKQQRPQAAVSQVAENRYPVIRKDGWLEVELAEYYNKDLENTELEISLREVKKLNWKRGLVIQGIEIRPK 306
Y LPEGC+A+ +S T+P DACRL +VA+ R A+SDAVW+RF P+DY +I R++ + G + + SKKE +++LCD PL ID G+ SFSL+K + KKC+M+AA L I W D+P YW W S PESRF++V EL+DVCW +I GKI+TS+LSPDT Y +LV+ GF Q E +VGISG + +IV+LD + +PRR G F++ ++ P + S+ A+ RYP R DGW+EVEL E++ K ++ ELE+SL EVK+ NWK GLV++GIEIRPK
Sbjct: 33 YALPEGCIANVLSLTSPRDACRLSVVATIFRSAAESDAVWDRFFPTDYCDIIPRSINGEPGSISF----KSKKELFLYLCDHPLFIDGGSKSFSLEKASGKKCYMLAARSLAIVWADTPRYWRWMSLPESRFSEVAELLDVCWLDISGKINTSMLSPDTNYAAYLVFTTKSRTYGFDHQSAEGAVGISGHEKNTQIVFLDPEAARRHMYQIVPRRTGFFNQMADILRREVNPPPSESE-AQARYPQQRSDGWIEVELGEFFVKRGQDVELEMSLMEVKEGNWKSGLVVEGIEIRPK 323
BLAST of XM_017384993.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PYN2 ((F-box protein {ECO:0000313|EMBL:PSR98854.1}))
HSP 1 Score: 298.516 bits (763), Expect = 1.475e-98
Identity = 144/295 (48.81%), Postives = 199/295 (67.46%), Query Frame = 0
Match: A0A2R6PYN2 ((F-box protein {ECO:0000313|EMBL:PSR98854.1}))
HSP 1 Score: 298.516 bits (763), Expect = 1.475e-98
Identity = 144/295 (48.81%), Postives = 199/295 (67.46%), Query Frame = 0
Query: 16 LPEGCLAHSISYTTPVDACRLRLVASSVRVIADSDAVWERFLPSDYQQLISRAVPDDQGLLHYMLASASKKEFYIFLCDQPLVIDNGALSFSLDKPTAKKCFMIAASELQITWGDSPLYWSWKSDPESRFTKVIELMDVCWFEICGKIDTSLLSPDTAYTTFLVYKASGDLSGFKDQPIEISVGISGEDSMNRIVYLDHSVEVQRGTTTLPRRRGLFHRFRAKQQ-RPQAAVSQVAENRYPVIRKDGWLEVELAEYYNKDLENTELEISLREVKKLNWKRGLVIQGIEIRPKVVT 309
LPEGC+A+ +S T+P +ACR+ +V S+ R A+SDAVWE+FLP DY +++RAV SKK+ Y++L D PL+IDN SF L+K + ++C+M+AA L I WGD+P YW W S PESRF +V EL+ VCW EI GKI+TS+LSP T Y +LV+K++ GF+ QP +SVGISG +S R V+LD + +PRR +F+R A R A +S+ +E++YP +R DGW+E+EL EY+NK E++E+E+SL EV +WK GLV+QGIEIRPK T
Sbjct: 5 LPEGCIANVVSLTSPQEACRVSMVGSTFRSAAESDAVWEKFLPRDYDDIVARAVAPPPRF-------DSKKQLYLWLSDHPLIIDNATKSFWLEKRSGRRCYMLAARNLAIVWGDTPSYWRWTSLPESRFPEVAELVSVCWLEIRGKINTSVLSPSTTYAAYLVFKSTASTYGFQYQPAVVSVGISGAESETRNVFLDPEGGQRMRYQIMPRRIRIFNRTLASNMFRSHACISRESEHQYPKVRGDGWMEIELGEYFNKGGEDSEMEMSLMEVNGGDWKSGLVVQGIEIRPKEAT 292
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7BDD5 | E-Value: 1.569e-103, PID: 53.04 | (Putative F-box protein PP2-B10-like {ECO:0000313|... [more] |
| A0A1U7VL36 | E-Value: 7.271e-102, PID: 51.19 | (F-box protein PP2-B10-like {ECO:0000313|RefSeq:XP... [more] |
| A0A1S3XS60 | E-Value: 8.378e-102, PID: 51.19 | (F-box protein PP2-B10-like {ECO:0000313|RefSeq:XP... [more] |
| A0A5J5B8U8 | E-Value: 1.177e-101, PID: 51.35 | F-box domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A834GH41 | E-Value: 6.218e-100, PID: 48.84 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7131... [more] |
| A0A314LFJ9 | E-Value: 4.186e-99, PID: 49.83 | (F-box protein {ECO:0000313|EMBL:OIT39799.1})[more] |
| A0A7J0DAL7 | E-Value: 9.747e-99, PID: 48.81 | (SKP1 interacting partner 3 {ECO:0000313|EMBL:GFS3... [more] |
| A0A2G2WUS6 | E-Value: 1.049e-98, PID: 49.32 | F-box domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A1U8GRA8 | E-Value: 1.262e-98, PID: 48.99 | (putative F-box protein PP2-B12 {ECO:0000313|RefSe... [more] |
| A0A2R6PYN2 | E-Value: 1.475e-98, PID: 48.81 | (F-box protein {ECO:0000313|EMBL:PSR98854.1})[more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |