Resource Type:
Polypeptide
Name:
XM_017385280.1
Identifier:
XM_017385280.1-protein
Sequence:
MVRDMRKLCCLFVLIMLRLALGEVASSRKEMVPAMFVFGDSLIDNGNNNN
LASLAKANYYPYGIDFRGGATGRFSNGYTMVDEIAELLGLPLTPAYSQAS
QEDQMLHGVNYASAAAGILDITGRNFVGRIPFNQQLKNFENTLDRITDNL
GAPDVAQALAKCIFFVGMGSNDYLNNYLMPNYPTRNQFNAQQYADLLIQQ
YKGQLTRLYNLGARKVIIGGLGLLGCIPSILSQSNSGHCSEEVNQLVLPF
NTNLKTMVNNLNTNLPGSKFIYIDIHNMFQDIIRNSRLYGFSVVDRGCCG
IGRNRGQITCLPFQQPCRNRNQYVFWDAFHPTAAVNIMMGRKAFTGNQDV
AYPMNIQQLANL
Sequence Length:
362
Sequence Checksum:
78317dcd15b6e4fa0d81738df3271daa
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017385280.1, derives from mRNA, XM_017385280.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017385280.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017385280.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6N7L8 ((Uncharacterized protein {ECO:0000313|EMBL:KAD4385291.1}))
HSP 1 Score: 578.556 bits (1490), Expect = 0.000e+0
Identity = 270/340 (79.41%), Postives = 309/340 (90.88%), Query Frame = 0
Match: A0A5N6N7L8 ((Uncharacterized protein {ECO:0000313|EMBL:KAD4385291.1}))
HSP 1 Score: 578.556 bits (1490), Expect = 0.000e+0
Identity = 270/340 (79.41%), Postives = 309/340 (90.88%), Query Frame = 0
Query: 24 VASSRKEMVPAMFVFGDSLIDNGNNNNLASLAKANYYPYGIDFRGGATGRFSNGYTMVDEIAELLGLPLTPAYSQASQE-DQMLHGVNYASAAAGILDITGRNFVGRIPFNQQLKNFENTLDRITDNLGAPDVAQALAKCIFFVGMGSNDYLNNYLMPNYPTRNQFNAQQYADLLIQQYKGQLTRLYNLGARKVIIGGLGLLGCIPSILSQSNSGHCSEEVNQLVLPFNTNLKTMVNNLNTNLPGSKFIYIDIHNMFQDIIRNSRLYGFSVVDRGCCGIGRNRGQITCLPFQQPCRNRNQYVFWDAFHPTAAVNIMMGRKAFTGNQDVAYPMNIQQLANL 362
++S KEMVPAMFVFGDSLIDNGNNN+LASLAKANY+PYGIDF+GG TGRFSNGYTMVDEIAELLGLPL PAYSQ+S DQMLHGVN+ASAAAGILD TGRNFVGRIPFNQQ+KNFEN+LD+I+D LGA D+ QAL++CIFFVGMGSNDYLNNYLMPNYPTRNQ++ QYADLL Q+Y QL +LYNLGARK ++ G+GL+GCIPSIL+QS SG CS +VNQLVLPFN N+KTM+NNL+TNLPGS+F++ID+HNMFQDI+ N+R YGFSVV+RGCCGIGRN GQITCLPFQ PC NRN+YVFWDAFHPT AVN++MGRKAF+G+ DV YPMNIQQLANL
Sbjct: 38 ASASTKEMVPAMFVFGDSLIDNGNNNDLASLAKANYFPYGIDFKGGPTGRFSNGYTMVDEIAELLGLPLIPAYSQSSNSADQMLHGVNFASAAAGILDNTGRNFVGRIPFNQQIKNFENSLDQISDALGAADLGQALSRCIFFVGMGSNDYLNNYLMPNYPTRNQYDGNQYADLLSQEYTTQLKQLYNLGARKFVLAGIGLMGCIPSILAQSASGSCSNDVNQLVLPFNANMKTMINNLSTNLPGSRFVFIDVHNMFQDILANARSYGFSVVNRGCCGIGRNSGQITCLPFQTPCANRNEYVFWDAFHPTDAVNVLMGRKAFSGSLDVVYPMNIQQLANL 377
BLAST of XM_017385280.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P3ZZG1 ((GDSL esterase/lipase At1g71691 {ECO:0000313|RefSeq:XP_015886209.1}))
HSP 1 Score: 577.4 bits (1487), Expect = 0.000e+0
Identity = 271/339 (79.94%), Postives = 305/339 (89.97%), Query Frame = 0
Match: A0A6P3ZZG1 ((GDSL esterase/lipase At1g71691 {ECO:0000313|RefSeq:XP_015886209.1}))
HSP 1 Score: 577.4 bits (1487), Expect = 0.000e+0
Identity = 271/339 (79.94%), Postives = 305/339 (89.97%), Query Frame = 0
Query: 24 VASSRKEMVPAMFVFGDSLIDNGNNNNLASLAKANYYPYGIDFRGGATGRFSNGYTMVDEIAELLGLPLTPAYSQASQEDQMLHGVNYASAAAGILDITGRNFVGRIPFNQQLKNFENTLDRITDNLGAPDVAQALAKCIFFVGMGSNDYLNNYLMPNYPTRNQFNAQQYADLLIQQYKGQLTRLYNLGARKVIIGGLGLLGCIPSILSQSNSGHCSEEVNQLVLPFNTNLKTMVNNLNTNLPGSKFIYIDIHNMFQDIIRNSRLYGFSVVDRGCCGIGRNRGQITCLPFQQPCRNRNQYVFWDAFHPTAAVNIMMGRKAFTGNQDVAYPMNIQQLANL 362
VA SRKEMVPAMF+FGDSLIDNGNNNNLAS AKANYYPYGIDF GG TGRFSNGYTMVDEIA+LLGLPL PAYS+AS E Q+LHGVNYASAAAGILDITGRNFVGRIPF++Q+ NF+ TLD+ITDNLGA DVA AL+KCIFFVGMGSNDYLNNYLMPNYPTRNQFN QYADLL+Q+Y QLT+LYNLGARKV++ GLG++GCIPSIL+QS +G CSEEVNQLV PFN N+KTM+NNLNTNLPG++F YID+ MFQDI+ N R YGFSV++RGCCGIGRNRGQ+TCLP Q PC NR+QYVFWDAFHPT AVNI+MGRKAF G+ + YP+NI+QLANL
Sbjct: 41 VAVSRKEMVPAMFIFGDSLIDNGNNNNLASFAKANYYPYGIDFNGGPTGRFSNGYTMVDEIAQLLGLPLIPAYSEASGE-QLLHGVNYASAAAGILDITGRNFVGRIPFDEQINNFQTTLDQITDNLGANDVASALSKCIFFVGMGSNDYLNNYLMPNYPTRNQFNGPQYADLLVQKYTQQLTKLYNLGARKVVLAGLGIMGCIPSILAQSPTGSCSEEVNQLVQPFNANVKTMINNLNTNLPGARFTYIDVARMFQDILTNHRAYGFSVINRGCCGIGRNRGQVTCLPMQTPCPNRDQYVFWDAFHPTEAVNILMGRKAFNGDSTLVYPLNIEQLANL 378
BLAST of XM_017385280.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BTF0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8546265.1}))
HSP 1 Score: 577.015 bits (1486), Expect = 0.000e+0
Identity = 271/343 (79.01%), Postives = 306/343 (89.21%), Query Frame = 0
Match: A0A5J5BTF0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8546265.1}))
HSP 1 Score: 577.015 bits (1486), Expect = 0.000e+0
Identity = 271/343 (79.01%), Postives = 306/343 (89.21%), Query Frame = 0
Query: 20 ALGEVASSRKEMVPAMFVFGDSLIDNGNNNNLASLAKANYYPYGIDFRGGATGRFSNGYTMVDEIAELLGLPLTPAYSQASQEDQMLHGVNYASAAAGILDITGRNFVGRIPFNQQLKNFENTLDRITDNLGAPDVAQALAKCIFFVGMGSNDYLNNYLMPNYPTRNQFNAQQYADLLIQQYKGQLTRLYNLGARKVIIGGLGLLGCIPSILSQSNSGHCSEEVNQLVLPFNTNLKTMVNNLNTNLPGSKFIYIDIHNMFQDIIRNSRLYGFSVVDRGCCGIGRNRGQITCLPFQQPCRNRNQYVFWDAFHPTAAVNIMMGRKAFTGNQDVAYPMNIQQLANL 362
A R+EMVPAMF+FGDSLIDNGNNN+L S AKANYYPYGIDF GG TGRFSNGYTMVDEIAELLGLPL PAYS+AS +QMLHGVNYASAAAGILDITGRNFVGRIPFNQQ++NFENTLD++TD+LGA DVAQA+A+CIFFVGMGSNDYLNNYLMPNYPTRNQ+N QQYADLLI+QY QLTRLYNLGARKV++ GLG++GCIPSIL+QS +G CS+EVNQL+LPFN N+KTM+NNLNTN PG +YIDIHNMFQDI+ N R YGFSV+++GCCGIGRNRGQITCLPFQ PC NRN++VFWDAFHPT AVNI+MGRKAF G+ YP+NIQQLAN+
Sbjct: 27 AFAPEGVGRREMVPAMFIFGDSLIDNGNNNDLPSFAKANYYPYGIDFNGGPTGRFSNGYTMVDEIAELLGLPLIPAYSEAS-SNQMLHGVNYASAAAGILDITGRNFVGRIPFNQQIRNFENTLDQLTDSLGAVDVAQAIARCIFFVGMGSNDYLNNYLMPNYPTRNQYNGQQYADLLIKQYTQQLTRLYNLGARKVVLAGLGIMGCIPSILAQSANGRCSDEVNQLILPFNANMKTMINNLNTNFPGLHIVYIDIHNMFQDILTNHRSYGFSVINQGCCGIGRNRGQITCLPFQTPCPNRNRFVFWDAFHPTEAVNIIMGRKAFNGDTSAVYPINIQQLANI 368
BLAST of XM_017385280.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1Q3B8J3 ((Lipase_GDSL domain-containing protein {ECO:0000313|EMBL:GAV64102.1}))
HSP 1 Score: 575.859 bits (1483), Expect = 0.000e+0
Identity = 277/365 (75.89%), Postives = 314/365 (86.03%), Query Frame = 0
Match: A0A1Q3B8J3 ((Lipase_GDSL domain-containing protein {ECO:0000313|EMBL:GAV64102.1}))
HSP 1 Score: 575.859 bits (1483), Expect = 0.000e+0
Identity = 277/365 (75.89%), Postives = 314/365 (86.03%), Query Frame = 0
Query: 7 KLCCLFVLIMLRLAL---------GEVASSRKEMVPAMFVFGDSLIDNGNNNNLASLAKANYYPYGIDFRGGATGRFSNGYTMVDEIAELLGLPLTPAYSQASQEDQMLHGVNYASAAAGILDITGRNFVGRIPFNQQLKNFENTLDRITDNLGAPDVAQALAKCIFFVGMGSNDYLNNYLMPNYPTRNQFNAQQYADLLIQQYKGQLTRLYNLGARKVIIGGLGLLGCIPSILSQSNSGHCSEEVNQLVLPFNTNLKTMVNNLNTNLPGSKFIYIDIHNMFQDIIRNSRLYGFSVVDRGCCGIGRNRGQITCLPFQQPCRNRNQYVFWDAFHPTAAVNIMMGRKAFTGNQDVAYPMNIQQLANL 362
+L L V +++ L+L G R+EMVPAMF+FGDSLIDNGNNN+L S AKANY PYGIDF GG TGRFSNGYTMVDEIAELLGLPL P+YSQAS DQ+LHGVNYASAAAGILDITGRNFV RIPFNQQ+KNFENTL++ITDNLGA DV Q++ +C+FFVGMGSNDYLNNYLMPNYPTRNQ+NAQQYADLL+QQY QLT LYNLGARK ++GGLG++GCIPSIL+QS G CSEEVN LVLPFN N+KTM+NNLN+NLPG+KFI+ID+ MFQD+I NSR YGFSVVDRGCCGIGRNRGQITCLPFQ PC NR+QY+FWDAFHPT AVNI+MGRKAF G+ + YPMNI+QLANL
Sbjct: 5 RLPFLLVFLLMTLSLVQGQGEDPSGAQVGRRREMVPAMFIFGDSLIDNGNNNDLPSFAKANYLPYGIDFNGGPTGRFSNGYTMVDEIAELLGLPLIPSYSQAS-GDQVLHGVNYASAAAGILDITGRNFVSRIPFNQQIKNFENTLNQITDNLGADDVGQSIRRCLFFVGMGSNDYLNNYLMPNYPTRNQYNAQQYADLLVQQYTRQLTSLYNLGARKFVLGGLGIMGCIPSILAQSPVGRCSEEVNGLVLPFNANVKTMINNLNSNLPGAKFIFIDVARMFQDLILNSRAYGFSVVDRGCCGIGRNRGQITCLPFQTPCPNRDQYIFWDAFHPTEAVNILMGRKAFNGDLSMVYPMNIEQLANL 368
BLAST of XM_017385280.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q199 ((GDSL esterase/lipase {ECO:0000313|EMBL:PSS00175.1}))
HSP 1 Score: 573.163 bits (1476), Expect = 0.000e+0
Identity = 274/345 (79.42%), Postives = 306/345 (88.70%), Query Frame = 0
Match: A0A2R6Q199 ((GDSL esterase/lipase {ECO:0000313|EMBL:PSS00175.1}))
HSP 1 Score: 573.163 bits (1476), Expect = 0.000e+0
Identity = 274/345 (79.42%), Postives = 306/345 (88.70%), Query Frame = 0
Query: 20 ALGEVASS--RKEMVPAMFVFGDSLIDNGNNNNLASLAKANYYPYGIDFRGGATGRFSNGYTMVDEIAELLGLPLTPAYSQASQEDQMLHGVNYASAAAGILDITGRNFVGRIPFNQQLKNFENTLDRITDNLGAPDVAQALAKCIFFVGMGSNDYLNNYLMPNYPTRNQFNAQQYADLLIQQYKGQLTRLYNLGARKVIIGGLGLLGCIPSILSQSNSGHCSEEVNQLVLPFNTNLKTMVNNLNTNLPGSKFIYIDIHNMFQDIIRNSRLYGFSVVDRGCCGIGRNRGQITCLPFQQPCRNRNQYVFWDAFHPTAAVNIMMGRKAFTGNQDVAYPMNIQQLANL 362
A GE + S RKEMVPAMF+FGDSLIDNGNNNNL S AKANYYPYGIDF+ G TGRFSNGYTMVDEI ELLGLPL PAYSQAS E QMLHG+NYASAAAGILDITGRNFVGRIPFNQQ+KNFENTLD+IT NLGA ++AQAL +CIFFVGMGSNDYLNNYLMPNY TRN++N QYADLL+Q+Y QLTRLYNLG RK ++ GLGL+GCIPSIL+QS +G CSEEVNQL++PFN NLK M+N L++NLPGS FIYID+ NMFQDI+ N R YGFSV++RGCCGIGRNRGQITCLPF+ PC NRNQYVFWDAFHPT AVNI+MGRKAF+G+Q V YPMNI+QLANL
Sbjct: 32 APGEQSESGRRKEMVPAMFIFGDSLIDNGNNNNLPSFAKANYYPYGIDFQAGPTGRFSNGYTMVDEIGELLGLPLIPAYSQASGE-QMLHGLNYASAAAGILDITGRNFVGRIPFNQQIKNFENTLDQITGNLGAVNMAQALGRCIFFVGMGSNDYLNNYLMPNYQTRNEYNGPQYADLLVQEYSQQLTRLYNLGGRKFVLAGLGLMGCIPSILAQSVTGQCSEEVNQLMIPFNANLKVMMNQLSSNLPGSHFIYIDVRNMFQDILTNYRSYGFSVINRGCCGIGRNRGQITCLPFETPCPNRNQYVFWDAFHPTEAVNILMGRKAFSGDQTVVYPMNIEQLANL 375
BLAST of XM_017385280.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9UD05 ((GDSL esterase/lipase At1g71691 {ECO:0000313|RefSeq:XP_011095918.1}))
HSP 1 Score: 572.392 bits (1474), Expect = 0.000e+0
Identity = 269/340 (79.12%), Postives = 304/340 (89.41%), Query Frame = 0
Match: A0A6I9UD05 ((GDSL esterase/lipase At1g71691 {ECO:0000313|RefSeq:XP_011095918.1}))
HSP 1 Score: 572.392 bits (1474), Expect = 0.000e+0
Identity = 269/340 (79.12%), Postives = 304/340 (89.41%), Query Frame = 0
Query: 23 EVASSRKEMVPAMFVFGDSLIDNGNNNNLASLAKANYYPYGIDFRGGATGRFSNGYTMVDEIAELLGLPLTPAYSQASQEDQMLHGVNYASAAAGILDITGRNFVGRIPFNQQLKNFENTLDRITDNLGAPDVAQALAKCIFFVGMGSNDYLNNYLMPNYPTRNQFNAQQYADLLIQQYKGQLTRLYNLGARKVIIGGLGLLGCIPSILSQSNSGHCSEEVNQLVLPFNTNLKTMVNNLNTNLPGSKFIYIDIHNMFQDIIRNSRLYGFSVVDRGCCGIGRNRGQITCLPFQQPCRNRNQYVFWDAFHPTAAVNIMMGRKAFTGNQDVAYPMNIQQLANL 362
+ R+ +VPAMF+FGDSLIDNGNNNNL S AKANY+PYGIDF+GG TGRFSNGYTMVD IAELLGLPL PAYS+AS DQM +GVNYASAA+GILDITGRNFV RIPF QQ++NFENTLD+ITDNLGAPDVAQALAKCIFFVGMGSNDYLNNYLMPNY TRNQ+NAQQY+DLL+QQY QLTRLYNLGARK +I GLGL+GCIPSIL+QSN+G CSEEVNQLVLPFNT K M+NNL+ NLPG++F YIDI +MFQD++ N+R YGF+VV+RGCCGIGRNRGQITCLPFQ PC NRNQY+FWDAFHPT AVN++ GR+AF GN+DV YPMNI+QLA L
Sbjct: 34 DAGEMRRALVPAMFIFGDSLIDNGNNNNLPSFAKANYFPYGIDFKGGPTGRFSNGYTMVDTIAELLGLPLIPAYSEAS-GDQMRYGVNYASAASGILDITGRNFVSRIPFGQQIRNFENTLDQITDNLGAPDVAQALAKCIFFVGMGSNDYLNNYLMPNYNTRNQYNAQQYSDLLVQQYSQQLTRLYNLGARKFVIAGLGLMGCIPSILAQSNNGVCSEEVNQLVLPFNTKTKAMINNLSANLPGARFSYIDIRHMFQDLLANARSYGFTVVNRGCCGIGRNRGQITCLPFQTPCPNRNQYIFWDAFHPTEAVNVLFGRRAFYGNRDVVYPMNIEQLARL 372
BLAST of XM_017385280.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5CFC6 ((Lipase {ECO:0000313|EMBL:PON59760.1}))
HSP 1 Score: 572.007 bits (1473), Expect = 0.000e+0
Identity = 271/340 (79.71%), Postives = 306/340 (90.00%), Query Frame = 0
Match: A0A2P5CFC6 ((Lipase {ECO:0000313|EMBL:PON59760.1}))
HSP 1 Score: 572.007 bits (1473), Expect = 0.000e+0
Identity = 271/340 (79.71%), Postives = 306/340 (90.00%), Query Frame = 0
Query: 24 VASSRKEMVPAMFVFGDSLIDNGNNNNLA-SLAKANYYPYGIDFRGGATGRFSNGYTMVDEIAELLGLPLTPAYSQASQEDQMLHGVNYASAAAGILDITGRNFVGRIPFNQQLKNFENTLDRITDNLGAPDVAQALAKCIFFVGMGSNDYLNNYLMPNYPTRNQFNAQQYADLLIQQYKGQLTRLYNLGARKVIIGGLGLLGCIPSILSQSNSGHCSEEVNQLVLPFNTNLKTMVNNLNTNLPGSKFIYIDIHNMFQDIIRNSRLYGFSVVDRGCCGIGRNRGQITCLPFQQPCRNRNQYVFWDAFHPTAAVNIMMGRKAFTGNQDVAYPMNIQQLANL 362
+ R EMVPAMF+FGDSLIDNGNNNNL S AKANY+PYGIDF+GG TGRFSNGYT+VDEIAELLGLPL PAYS A+ DQ LHGVNYASAAAGILD TGRNFVGRIPFNQQ+KNFENTLD+ITDNLGA DVAQ+LA CIFFVGMGSNDYLNNYLMPNYPTRNQ+NAQQ+ADLL Q+Y QLTRLYNLGARK+++GGLGL+GCIPSIL+QS +G CS+EVNQLV+PFN N+KTM+N+LNTNLPG+KFIY+DI +MFQ+++ N R YGFSVV+RGCCGIGRNRGQITCLPFQ PC NR +YVFWDAFHPT+AVNI+MGR AF G+Q YPMNI+QLANL
Sbjct: 44 TSDERNEMVPAMFIFGDSLIDNGNNNNLPLSFAKANYFPYGIDFKGGPTGRFSNGYTIVDEIAELLGLPLIPAYS-ATSGDQALHGVNYASAAAGILDNTGRNFVGRIPFNQQIKNFENTLDQITDNLGAVDVAQSLASCIFFVGMGSNDYLNNYLMPNYPTRNQYNAQQFADLLAQEYTQQLTRLYNLGARKIVVGGLGLMGCIPSILAQSPTGSCSQEVNQLVMPFNANVKTMINSLNTNLPGAKFIYVDISHMFQELLANYRSYGFSVVNRGCCGIGRNRGQITCLPFQTPCPNRQEYVFWDAFHPTSAVNIIMGRMAFNGDQSSVYPMNIEQLANL 382
BLAST of XM_017385280.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BD70 ((Putative Zinc finger protein isoform 1 {ECO:0000313|EMBL:MPA65711.1}) (1.3.1.111 {ECO:0000313|EMBL:MPA65711.1}) (1.3.1.83 {ECO:0000313|EMBL:MPA65711.1}) (Fragment))
HSP 1 Score: 571.622 bits (1472), Expect = 0.000e+0
Identity = 269/335 (80.30%), Postives = 299/335 (89.25%), Query Frame = 0
Match: A0A5B7BD70 ((Putative Zinc finger protein isoform 1 {ECO:0000313|EMBL:MPA65711.1}) (1.3.1.111 {ECO:0000313|EMBL:MPA65711.1}) (1.3.1.83 {ECO:0000313|EMBL:MPA65711.1}) (Fragment))
HSP 1 Score: 571.622 bits (1472), Expect = 0.000e+0
Identity = 269/335 (80.30%), Postives = 299/335 (89.25%), Query Frame = 0
Query: 28 RKEMVPAMFVFGDSLIDNGNNNNLASLAKANYYPYGIDFRGGATGRFSNGYTMVDEIAELLGLPLTPAYSQASQEDQMLHGVNYASAAAGILDITGRNFVGRIPFNQQLKNFENTLDRITDNLGAPDVAQALAKCIFFVGMGSNDYLNNYLMPNYPTRNQFNAQQYADLLIQQYKGQLTRLYNLGARKVIIGGLGLLGCIPSILSQSNSGHCSEEVNQLVLPFNTNLKTMVNNLNTNLPGSKFIYIDIHNMFQDIIRNSRLYGFSVVDRGCCGIGRNRGQITCLPFQQPCRNRNQYVFWDAFHPTAAVNIMMGRKAFTGNQDVAYPMNIQQLANL 362
R+EMVPAMF+FGDSLIDNGNNN+L SLAKANYYPYGIDF GG TGRFSNGYTMVDEIA+LLGLPL PAYS+AS DQ+LHGVNYASAAAGILDITGRNFVGRIPFNQQ+ NFENTL++I NLGA +VAQAL +CIFFVGMGSNDYLNNYLMPNYPTRNQF+ QQYADLL+Q+Y QLT LYNLGARK ++ GLGL+GCIPSIL+QS +G CSEEVNQLVLPFN N K M+NNL+ +LPG +YIDIHNMFQDI+ N R YGFSV+DRGCCGIGRNRGQITCLP Q PC NR+QYVFWDAFHPT AVNI+MGRKAF G+Q V YP+NI+QLANL
Sbjct: 62 RREMVPAMFIFGDSLIDNGNNNDLTSLAKANYYPYGIDFNGGPTGRFSNGYTMVDEIAQLLGLPLIPAYSEAS-GDQVLHGVNYASAAAGILDITGRNFVGRIPFNQQISNFENTLNQIKPNLGAAEVAQALTRCIFFVGMGSNDYLNNYLMPNYPTRNQFDGQQYADLLVQRYTLQLTHLYNLGARKFVLAGLGLMGCIPSILAQSATGSCSEEVNQLVLPFNANTKAMINNLSASLPGIHIVYIDIHNMFQDILTNYRSYGFSVIDRGCCGIGRNRGQITCLPMQTPCPNRDQYVFWDAFHPTEAVNIIMGRKAFNGDQTVVYPINIEQLANL 395
BLAST of XM_017385280.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834G5C1 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7123369.1}))
HSP 1 Score: 570.081 bits (1468), Expect = 0.000e+0
Identity = 275/372 (73.92%), Postives = 312/372 (83.87%), Query Frame = 0
Match: A0A834G5C1 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7123369.1}))
HSP 1 Score: 570.081 bits (1468), Expect = 0.000e+0
Identity = 275/372 (73.92%), Postives = 312/372 (83.87%), Query Frame = 0
Query: 7 KLCCLFVLIML----------------RLALGEVASSRKEMVPAMFVFGDSLIDNGNNNNLASLAKANYYPYGIDFRGGATGRFSNGYTMVDEIAELLGLPLTPAYSQASQEDQMLHGVNYASAAAGILDITGRNFVGRIPFNQQLKNFENTLDRITDNLGAPDVAQALAKCIFFVGMGSNDYLNNYLMPNYPTRNQFNAQQYADLLIQQYKGQLTRLYNLGARKVIIGGLGLLGCIPSILSQSNSGHCSEEVNQLVLPFNTNLKTMVNNLNTNLPGSKFIYIDIHNMFQDIIRNSRLYGFSVVDRGCCGIGRNRGQITCLPFQQPCRNRNQYVFWDAFHPTAAVNIMMGRKAFTGNQDVAYPMNIQQLANL 362
K CL+VL+++ A E SR+EMVPA F+FGDSLIDNGNNNNL S AKANY+PYGIDF GG TGRFSNGYTMVDEIAELLGLPL PAYS+AS DQ+LHGVNYASAAAGILDITGRNFVGRIPFNQQ+KNFENTLD+IT NLGA ++AQAL + IFFVGMGSNDYLNNYLMPNYPTRN++N QQYADLLIQQY QLTR+YNLGARK ++ GLGL+GCIPSIL+QS G CS+EVNQL++PFN N+K M+N+L+TNLPGS F YID+ NMF DI+ N R YGFSV++RGCCGIGRNRGQITCLPFQ PC NR+QYVFWDAFHPT AVNI+MGRKAF+G+Q V P+NIQQLANL
Sbjct: 6 KFFCLWVLMVMLVSSSSAVIGQGEGSDAFAPEEAVGSRREMVPAFFIFGDSLIDNGNNNNLQSFAKANYFPYGIDFEGGPTGRFSNGYTMVDEIAELLGLPLIPAYSEASG-DQVLHGVNYASAAAGILDITGRNFVGRIPFNQQIKNFENTLDQITGNLGAVELAQALGRSIFFVGMGSNDYLNNYLMPNYPTRNEYNGQQYADLLIQQYSQQLTRMYNLGARKFVLAGLGLMGCIPSILAQSPIGRCSDEVNQLMIPFNANIKMMMNSLSTNLPGSHFTYIDVRNMFNDILTNYRSYGFSVINRGCCGIGRNRGQITCLPFQTPCPNRDQYVFWDAFHPTEAVNIIMGRKAFSGDQTVVSPINIQQLANL 376
BLAST of XM_017385280.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9H4Q3 ((Triacylglycerol lipase {ECO:0000313|EMBL:PIN12498.1}) (3.1.1.3 {ECO:0000313|EMBL:PIN12498.1}))
HSP 1 Score: 568.54 bits (1464), Expect = 0.000e+0
Identity = 271/343 (79.01%), Postives = 302/343 (88.05%), Query Frame = 0
Match: A0A2G9H4Q3 ((Triacylglycerol lipase {ECO:0000313|EMBL:PIN12498.1}) (3.1.1.3 {ECO:0000313|EMBL:PIN12498.1}))
HSP 1 Score: 568.54 bits (1464), Expect = 0.000e+0
Identity = 271/343 (79.01%), Postives = 302/343 (88.05%), Query Frame = 0
Query: 20 ALGEVASSRKEMVPAMFVFGDSLIDNGNNNNLASLAKANYYPYGIDFRGGATGRFSNGYTMVDEIAELLGLPLTPAYSQASQEDQMLHGVNYASAAAGILDITGRNFVGRIPFNQQLKNFENTLDRITDNLGAPDVAQALAKCIFFVGMGSNDYLNNYLMPNYPTRNQFNAQQYADLLIQQYKGQLTRLYNLGARKVIIGGLGLLGCIPSILSQSNSGHCSEEVNQLVLPFNTNLKTMVNNLNTNLPGSKFIYIDIHNMFQDIIRNSRLYGFSVVDRGCCGIGRNRGQITCLPFQQPCRNRNQYVFWDAFHPTAAVNIMMGRKAFTGNQDVAYPMNIQQLANL 362
A S + +VPAMF+FGDSLIDNGNNNNLAS AKANY+PYGIDF GG TGRFSNGYTMVD IAELLGLPL PAYS+AS DQM +GVNYASAAAGILDITGRNFVGRIPFN Q+KNFENTLD+ITD+LGAPDVAQALAKCIFFVGMGSNDYLNNYLMPNY TRNQ+NAQQYADLL+QQY QLTRLYNLGARK +I GLG +GCIPSI +QS++G CSEEV+QLV PFNTN K M+NNL NLPGS+F YIDI NMFQD++ N+R YGFSV++RGCCGIGRNRGQITCLPFQ PC +RNQYVFWDAFHPT AVN++ G+KAF GN DV YP+NI+QLA+L
Sbjct: 33 ASAPAVSEGRALVPAMFIFGDSLIDNGNNNNLASFAKANYFPYGIDFSGGPTGRFSNGYTMVDTIAELLGLPLIPAYSEAS-GDQMRYGVNYASAAAGILDITGRNFVGRIPFNDQIKNFENTLDQITDSLGAPDVAQALAKCIFFVGMGSNDYLNNYLMPNYDTRNQYNAQQYADLLVQQYSQQLTRLYNLGARKFVIAGLGQMGCIPSIRAQSSNGACSEEVSQLVRPFNTNTKAMINNLTVNLPGSRFSYIDIRNMFQDLVANARSYGFSVLNRGCCGIGRNRGQITCLPFQTPCPDRNQYVFWDAFHPTQAVNVLFGQKAFNGNTDVVYPINIEQLASL 374
| Match Name | Stats | Description |
|---|---|---|
| A0A5N6N7L8 | E-Value: 0.000e+0, PID: 79.41 | (Uncharacterized protein {ECO:0000313|EMBL:KAD4385... [more] |
| A0A6P3ZZG1 | E-Value: 0.000e+0, PID: 79.94 | (GDSL esterase/lipase At1g71691 {ECO:0000313|RefSe... [more] |
| A0A5J5BTF0 | E-Value: 0.000e+0, PID: 79.01 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8546... [more] |
| A0A1Q3B8J3 | E-Value: 0.000e+0, PID: 75.89 | (Lipase_GDSL domain-containing protein {ECO:000031... [more] |
| A0A2R6Q199 | E-Value: 0.000e+0, PID: 79.42 | (GDSL esterase/lipase {ECO:0000313|EMBL:PSS00175.1... [more] |
| A0A6I9UD05 | E-Value: 0.000e+0, PID: 79.12 | (GDSL esterase/lipase At1g71691 {ECO:0000313|RefSe... [more] |
| A0A2P5CFC6 | E-Value: 0.000e+0, PID: 79.71 | (Lipase {ECO:0000313|EMBL:PON59760.1})[more] |
| A0A5B7BD70 | E-Value: 0.000e+0, PID: 80.30 | (Putative Zinc finger protein isoform 1 {ECO:00003... [more] |
| A0A834G5C1 | E-Value: 0.000e+0, PID: 73.92 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7123... [more] |
| A0A2G9H4Q3 | E-Value: 0.000e+0, PID: 79.01 | (Triacylglycerol lipase {ECO:0000313|EMBL:PIN12498... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |