Resource Type:
Polypeptide
Name:
XM_017382369.1
Identifier:
XM_017382369.1-protein
Sequence:
MASTRVVFQLSVISFLYLNSRPTMCSNILKSCEIDKIYQLGDSVSDTGNR
MIENPSDACSRLPYGESNPMGPTGRCSDGLLIIDYIALAAGIPLLNPYLK
GKADFTHGVNFAVGGSTALSADTLAEKNIMVSGTKSSLSIQLEWMSAYFD
SHCNADLDCRPGSLKNALFMVGEIGGNDYNFALAQGKTTKEAVNMVPEVV
EIIKSAVRRVVGLGAARVIVPGNFPIGCFPVSLDMFKSNDESAYDEHQCL
KELNDFAEFHNEYLQKAITTLQEENPATTIVYADYYNAFKTLLINAPRLG
INATSVLKGCCGNIGSSSFTDKGCGSSDVQVCSYPDQYISWDGVHLTETA
NSILSKWLVADILPKLNCGLQITDY
Sequence Length:
375
Sequence Checksum:
68fef9f906e1d88736b2e25634273be1
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017382369.1, derives from mRNA, XM_017382369.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017382369.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017382369.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438FK77 ((Acetylajmalan esterase {ECO:0000313|EMBL:RVW60399.1}))
HSP 1 Score: 412.92 bits (1060), Expect = 2.222e-141
Identity = 204/373 (54.69%), Postives = 269/373 (72.12%), Query Frame = 0
Match: A0A438FK77 ((Acetylajmalan esterase {ECO:0000313|EMBL:RVW60399.1}))
HSP 1 Score: 412.92 bits (1060), Expect = 2.222e-141
Identity = 204/373 (54.69%), Postives = 269/373 (72.12%), Query Frame = 0
Query: 1 MASTRVVFQLSVISFLYLNSRPTMC-SNILKSCEIDKIYQLGDSVSDTGNRMIENPSDA---CSRLPYGESNPMGPTGRCSDGLLIIDYIALAAGIPLLNPYLKGKADFTHGVNFAVGGSTALSADTLAEKNIMVSGTKSSLSIQLEWMSAYFDSHCNADLDCRPGSLKNALFMVGEIGGNDYNFALAQGKTTKEAVNMVPEVVEIIKSAVRRVVGLGAARVIVPGNFPIGCFPVSLDMFKSNDESAYDEHQCLKELNDFAEFHNEYLQKAITTLQEENPATTIVYADYYNAFKTLLINAPRLGINATSVLKGCCGNIGSSSFTD-KGCGSSDVQVCSYPDQYISWDGVHLTETANSILSKWLVADILPKLNC 368
M++ + FQL +IS L + C + + C+ D IYQLGDS+SDTGN +IE+ A CSRLPYGE+ PTGRCS+GLL+ID++AL AG+P LNPYLK +DF+HGVNFAV G+TALS LA K ++ T SSL++QL+ MS++F S + D D R LK+ALF+VGEIGGND+NFA QGKT +E ++VP+VV+II AVRRV+ GA RV+VPGNFPIGC P+ L +FK+N+ +AYDE CLK NDFAE++NE LQ+AI L+ ENP T IVYADYYNAF+ L NA LG++ S+LK CCG+ G ++ + CG+ VQ C PD+ + WDG+HLT+ A+ +++KWL+ DILPKL C
Sbjct: 1 MSTIQEDFQLVLISTLLFLVFSSSCDAQPFRRCKFDSIYQLGDSISDTGNLIIESSLGAATPCSRLPYGETFFNEPTGRCSNGLLMIDHVALEAGLPFLNPYLKKDSDFSHGVNFAVTGATALSTSFLAAKGVISPVTNSSLNVQLDRMSSFFSSAFHNDTD-RAQELKDALFLVGEIGGNDFNFAFFQGKTIEEEKSIVPDVVQIISDAVRRVIQYGARRVVVPGNFPIGCLPIYLTVFKTNNTAAYDEFNCLKGFNDFAEYYNERLQQAIEELRNENPDTVIVYADYYNAFQWLFRNALFLGLDPASLLKACCGDGGEYNYDRARTCGAPGVQACPDPDRLVHWDGIHLTQKASMLIAKWLIQDILPKLQC 372
BLAST of XM_017382369.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7U9W3 ((Uncharacterized protein {ECO:0000313|EMBL:CBI39527.3}))
HSP 1 Score: 412.149 bits (1058), Expect = 5.150e-141
Identity = 204/373 (54.69%), Postives = 268/373 (71.85%), Query Frame = 0
Match: D7U9W3 ((Uncharacterized protein {ECO:0000313|EMBL:CBI39527.3}))
HSP 1 Score: 412.149 bits (1058), Expect = 5.150e-141
Identity = 204/373 (54.69%), Postives = 268/373 (71.85%), Query Frame = 0
Query: 1 MASTRVVFQLSVISFLYLNSRPTMC-SNILKSCEIDKIYQLGDSVSDTGNRMIENPSDA---CSRLPYGESNPMGPTGRCSDGLLIIDYIALAAGIPLLNPYLKGKADFTHGVNFAVGGSTALSADTLAEKNIMVSGTKSSLSIQLEWMSAYFDSHCNADLDCRPGSLKNALFMVGEIGGNDYNFALAQGKTTKEAVNMVPEVVEIIKSAVRRVVGLGAARVIVPGNFPIGCFPVSLDMFKSNDESAYDEHQCLKELNDFAEFHNEYLQKAITTLQEENPATTIVYADYYNAFKTLLINAPRLGINATSVLKGCCGNIGSSSFTD-KGCGSSDVQVCSYPDQYISWDGVHLTETANSILSKWLVADILPKLNC 368
M++ + FQL +IS L + C + + C+ D IYQLGDS+SDTGN +IE+ A CSRLPYGE+ PTGRCS+GLL+ID++AL AG+P LNPYLK +DF+HGVNFAV G+TALS LA K ++ T SSL++QL+ MS++F S + D D R LK+ALF+VGEIGGND+NFA QGKT +E ++VP+VV+II AVRRV+ GA RV+VPGNFPIGC P+ L +FK+N+ +AYDE CLK NDFAE++NE LQ+AI L+ ENP T IVYADYYNAF+ L NA LG++ S+LK CCG G ++ + CG+ VQ C PD+ + WDG+HLT+ A+ +++KWL+ DILPKL C
Sbjct: 1 MSTIQEDFQLVLISTLLFLVFSSSCDAQPFRRCKFDSIYQLGDSISDTGNLIIESSLGAATPCSRLPYGETFFNEPTGRCSNGLLMIDHVALEAGLPFLNPYLKKDSDFSHGVNFAVTGATALSTSFLAAKGVISPVTNSSLNVQLDRMSSFFSSAFHNDTD-RAQELKDALFLVGEIGGNDFNFAFFQGKTIEEEKSIVPDVVQIISDAVRRVIQYGARRVVVPGNFPIGCLPIYLTVFKTNNTAAYDEFNCLKGFNDFAEYYNERLQQAIEELRNENPDTVIVYADYYNAFQWLFRNALFLGLDPASLLKACCGAGGEYNYDRARTCGAPGVQACPDPDRLVHWDGIHLTQKASMLIAKWLIQDILPKLQC 372
BLAST of XM_017382369.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0G8G4 ((Uncharacterized protein {ECO:0000313|EMBL:GFZ07073.1}))
HSP 1 Score: 409.068 bits (1050), Expect = 8.355e-140
Identity = 201/349 (57.59%), Postives = 250/349 (71.63%), Query Frame = 0
Match: A0A7J0G8G4 ((Uncharacterized protein {ECO:0000313|EMBL:GFZ07073.1}))
HSP 1 Score: 409.068 bits (1050), Expect = 8.355e-140
Identity = 201/349 (57.59%), Postives = 250/349 (71.63%), Query Frame = 0
Query: 26 SNILKSCEIDKIYQLGDSVSDTGNRMIENP---SDACSRLPYGESNPMGPTGRCSDGLLIIDYIALAAGIPLLNPYLKGKADFTHGVNFAVGGSTALSADTLAEKNIMVSGTKSSLSIQLEWMSAYFDSHCNADLDCRPGSLKNALFMVGEIGGNDYNFALAQGKTTKEAVNMVPEVVEIIKSAVRRVVGLGAARVIVPGNFPIGCFPVSLDMFKSNDESAYDEHQCLKELNDFAEFHNEYLQKAITTLQEENPATTIVYADYYNAFKTLLINAPRLGINATSVLKGCCGNIGSSSFT-DKGCGSSDVQVCSYPDQYISWDGVHLTETANSILSKWLVADILPKLNCGL 370
SN LK C D+IYQLGDS+SDTGN + E P + A ++LPYGE+ TGRCS+GLL+IDY ALAAG+P LNPY A+FTHG NFAV GSTALS + LA KNI T SSLS+QL+WM +F+S C+ + DC L+N+LFMVGEIGGNDYN+AL QGKT +E N+VP+VV IK AVRRV+ GA RV+VPGNFPIGC P+ L F++N+ +AYDE+ CLK LN+F+ +HN+ L++AI L+ E P+ IVY DYYNAF+ L AP LG + S K CCG G +F+ K CG+ V VC P+Q ISWDGVHLTE A I+S WL+ DILPKL C +
Sbjct: 29 SNPLKICNFDEIYQLGDSISDTGNLIRETPIGAATAFAKLPYGETYFNKATGRCSNGLLMIDYFALAAGLPFLNPYKNNDANFTHGANFAVAGSTALSVEDLAGKNISTVVTGSSLSVQLDWMFTHFNSICHTERDCIE-KLRNSLFMVGEIGGNDYNYALFQGKTIEEVQNIVPDVVRAIKEAVRRVINYGAVRVVVPGNFPIGCMPIYLTAFQTNNSAAYDEYHCLKHLNNFSIYHNDQLKQAIEELKREYPSAVIVYGDYYNAFEWLFRRAPHLGFDVESAQKACCGTGGDYNFSLAKMCGAPGVPVCPNPNQAISWDGVHLTEAAYKIMSGWLIHDILPKLQCSV 376
BLAST of XM_017382369.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0D9Z9 ((Uncharacterized protein {ECO:0000313|EMBL:GFS29732.1}))
HSP 1 Score: 405.601 bits (1041), Expect = 1.811e-138
Identity = 198/349 (56.73%), Postives = 247/349 (70.77%), Query Frame = 0
Match: A0A7J0D9Z9 ((Uncharacterized protein {ECO:0000313|EMBL:GFS29732.1}))
HSP 1 Score: 405.601 bits (1041), Expect = 1.811e-138
Identity = 198/349 (56.73%), Postives = 247/349 (70.77%), Query Frame = 0
Query: 26 SNILKSCEIDKIYQLGDSVSDTGNRMIENPSDACS---RLPYGESNPMGPTGRCSDGLLIIDYIALAAGIPLLNPYLKGKADFTHGVNFAVGGSTALSADTLAEKNIMVSGTKSSLSIQLEWMSAYFDSHCNADLDCRPGSLKNALFMVGEIGGNDYNFALAQGKTTKEAVNMVPEVVEIIKSAVRRVVGLGAARVIVPGNFPIGCFPVSLDMFKSNDESAYDEHQCLKELNDFAEFHNEYLQKAITTLQEENPATTIVYADYYNAFKTLLINAPRLGINATSVLKGCCGNIGSSSFT-DKGCGSSDVQVCSYPDQYISWDGVHLTETANSILSKWLVADILPKLNCGL 370
SN LK C D+IYQL DS+SDTGN + E P A + +LPYGE+ TGRCS+GLL+IDY A AAG+P LNPY +A+F HG NFAV GSTAL + LA KNI T SSLS+QL+WM +F++ CN D DC LKN+LFMVGEIGGNDYN+AL QGKT +E +MVP+VV IK AV+RV+ GA RV+VPGNFPIGC P+ L F++N+ +AYDEH CLK LN+F+ +HN++L++AI L+ E P +VY DYYNAF+ L AP LG +A S K CCG G +F+ + CG+ V VCS P Q ISWDGVHLT+ A I+S WL+ DILPKL C +
Sbjct: 28 SNPLKICHFDQIYQLRDSISDTGNLIRETPIGALTPFAKLPYGETFFNNATGRCSNGLLMIDYFASAAGLPFLNPYKNNEANFRHGANFAVAGSTALPVEVLAGKNISTMVTGSSLSVQLDWMFTHFNAICNIDRDCAE-KLKNSLFMVGEIGGNDYNYALLQGKTIEEVQSMVPDVVRAIKEAVKRVISYGAVRVVVPGNFPIGCMPIYLTAFQTNNSAAYDEHHCLKHLNNFSIYHNDHLKQAIEELKREYPNAVVVYGDYYNAFEWLFRRAPYLGFDAESAQKACCGTGGDYNFSLARMCGAPGVPVCSNPSQVISWDGVHLTQAAYKIMSGWLIHDILPKLQCSV 375
BLAST of XM_017382369.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q707 ((Acetylajmalan esterase {ECO:0000313|EMBL:PSS03034.1}))
HSP 1 Score: 404.445 bits (1038), Expect = 5.219e-138
Identity = 198/349 (56.73%), Postives = 244/349 (69.91%), Query Frame = 0
Match: A0A2R6Q707 ((Acetylajmalan esterase {ECO:0000313|EMBL:PSS03034.1}))
HSP 1 Score: 404.445 bits (1038), Expect = 5.219e-138
Identity = 198/349 (56.73%), Postives = 244/349 (69.91%), Query Frame = 0
Query: 26 SNILKSCEIDKIYQLGDSVSDTGNRMIENPSDACS---RLPYGESNPMGPTGRCSDGLLIIDYIALAAGIPLLNPYLKGKADFTHGVNFAVGGSTALSADTLAEKNIMVSGTKSSLSIQLEWMSAYFDSHCNADLDCRPGSLKNALFMVGEIGGNDYNFALAQGKTTKEAVNMVPEVVEIIKSAVRRVVGLGAARVIVPGNFPIGCFPVSLDMFKSNDESAYDEHQCLKELNDFAEFHNEYLQKAITTLQEENPATTIVYADYYNAFKTLLINAPRLGINATSVLKGCCGNIGSSSFT-DKGCGSSDVQVCSYPDQYISWDGVHLTETANSILSKWLVADILPKLNCGL 370
SN LK C D+IYQLGDS+SDTGN + E P A + +LPYGE+ TGRCS+G+L+IDY ALAAG+P LNPY A+F HG NFAV GSTAL + LAEKNI T SSLS+QL+WM +F++ C+ D DC LKN+LFMVGEIGGNDYN+AL QGKT +E N+VP+VV IK AV RV+ GA RV+VPGNFPIGC P+ L F++N+ +AYDEH CLK LN+F+ +HN+ L++AI L+ E P IVY DYYNAF+ L AP LG + S K CCG G +F+ + CG+ V VCS P Q ISWDGVHLT+ A I+ WL DILPKL C +
Sbjct: 28 SNPLKICHFDQIYQLGDSISDTGNLIRETPIGATTPFAKLPYGETFFKNATGRCSNGMLMIDYFALAAGLPFLNPYKNNDANFRHGANFAVAGSTALPVEVLAEKNISTMVTGSSLSVQLDWMFTHFNAICDTDRDCVE-KLKNSLFMVGEIGGNDYNYALFQGKTIEEVQNIVPDVVRAIKEAVSRVINYGAVRVVVPGNFPIGCMPIYLTAFQTNNSAAYDEHHCLKHLNNFSIYHNDQLKQAIEELKREYPNAVIVYGDYYNAFEWLFRRAPYLGFDTESAQKACCGTGGDYNFSLARMCGAPGVPVCSNPSQVISWDGVHLTQAAYKIMVGWLTHDILPKLQCSV 375
BLAST of XM_017382369.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0G8E5 ((SGNH hydrolase-type esterase superfamily protein {ECO:0000313|EMBL:GFZ07074.1}))
HSP 1 Score: 403.675 bits (1036), Expect = 9.735e-138
Identity = 196/349 (56.16%), Postives = 247/349 (70.77%), Query Frame = 0
Match: A0A7J0G8E5 ((SGNH hydrolase-type esterase superfamily protein {ECO:0000313|EMBL:GFZ07074.1}))
HSP 1 Score: 403.675 bits (1036), Expect = 9.735e-138
Identity = 196/349 (56.16%), Postives = 247/349 (70.77%), Query Frame = 0
Query: 26 SNILKSCEIDKIYQLGDSVSDTGNRMIENP---SDACSRLPYGESNPMGPTGRCSDGLLIIDYIALAAGIPLLNPYLKGKADFTHGVNFAVGGSTALSADTLAEKNIMVSGTKSSLSIQLEWMSAYFDSHCNADLDCRPGSLKNALFMVGEIGGNDYNFALAQGKTTKEAVNMVPEVVEIIKSAVRRVVGLGAARVIVPGNFPIGCFPVSLDMFKSNDESAYDEHQCLKELNDFAEFHNEYLQKAITTLQEENPATTIVYADYYNAFKTLLINAPRLGINATSVLKGCCGNIGSSSFT-DKGCGSSDVQVCSYPDQYISWDGVHLTETANSILSKWLVADILPKLNCGL 370
SN LK C D+IYQLGDS+SDTGN + E P A ++LPYGE+ TGRCS+G+L+IDY A AAG+P LNPY A+F HG NFAV GSTAL + LAEKNI T SSLS+QL+WM +F++ CN D DC LKN+LFMVGEIGGNDYN+AL QGKT E +MVP+VV IK AV+RV+G GA RV+VPGNFPIGC P+ L F++N+ +AYD+H CLK LN+F+ +HN+ L++AI L+ E P IVY DYYNAF+ L A LG +A S K CCG G +F+ + CG+ V VCS P + ISWDGVHLT+ A +++ WL+ DILPKL+C +
Sbjct: 29 SNPLKICHFDQIYQLGDSISDTGNLIRETPIGAMTAFAKLPYGETFFKNATGRCSNGMLMIDYFASAAGLPFLNPYKNNDANFKHGANFAVAGSTALPVEVLAEKNISTMVTGSSLSVQLDWMFTHFNAVCNTDRDCVE-KLKNSLFMVGEIGGNDYNYALFQGKTIDEVESMVPDVVRAIKEAVKRVIGYGAVRVVVPGNFPIGCMPIYLTAFQTNNSAAYDKHHCLKHLNNFSIYHNDQLKQAIEELKREYPNAVIVYGDYYNAFEWLFRRAQYLGFDAESAQKACCGTGGDYNFSLARMCGAPGVPVCSNPSELISWDGVHLTQAAYKVMAGWLIHDILPKLHCSV 376
BLAST of XM_017382369.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P3ZN46 ((GDSL esterase/lipase At5g03980-like isoform X1 {ECO:0000313|RefSeq:XP_015875017.1}))
HSP 1 Score: 398.667 bits (1023), Expect = 9.236e-136
Identity = 200/345 (57.97%), Postives = 252/345 (73.04%), Query Frame = 0
Match: A0A6P3ZN46 ((GDSL esterase/lipase At5g03980-like isoform X1 {ECO:0000313|RefSeq:XP_015875017.1}))
HSP 1 Score: 398.667 bits (1023), Expect = 9.236e-136
Identity = 200/345 (57.97%), Postives = 252/345 (73.04%), Query Frame = 0
Query: 29 LKSCEIDKIYQLGDSVSDTGNRMIENPSDACSRLPYGESNPMGPTGRCSDGLLIIDYIALAAGIPLLNPYLKGKADFT--HGVNFAVGGSTALSADTLAEKNIMVSGTKSSLSIQLEWMSAYFDSHCNADLDCRPGSLKNALFMVGEIGGNDYNFAL-AQGKTTKEAVNMVPEVVEIIKSAVRRVVGLGAARVIVPGNFPIGCFPVSLDMFKSNDESAYDEHQCLKELNDFAEFHNEYLQKAITTLQEENPATTIVYADYYNAFKTLLINAPRLGINATSVLKGCCGNIGSSSFT-DKGCGSSDVQVCSYPDQYISWDGVHLTETANSILSKWLVADILPKLNCG 369
LK+C+ + IYQLGDS+SDTGN + E P + PYGE+ TGRCS+GLL+IDYIAL+AG+PLLNPYL + T GVNFAV GSTALS + LAEKNI+ T SSLS+QL WMS +F+S C DC LK +LFMVGEIGGNDYN+A Q KT KEA +MVP+VV+ IK AV+ V+G GA RV+VPGNFPIGCFP+ L F++ND SAYDE+ CLKE N+F+ +HN+YL+ AI L++E+P TI+Y DYYNAF+ + +A LG +A+S+LK CCG G +F+ K CG+S V VCS PDQ ISWDGVH T+ A +S WL+ D+LP+L CG
Sbjct: 33 LKACKFNAIYQLGDSISDTGNLIYEKPGCVFFKFPYGETFFNRSTGRCSNGLLMIDYIALSAGLPLLNPYLSNDSLLTKDQGVNFAVAGSTALSPNVLAEKNIISPLTNSSLSVQLHWMSTHFNSLCLNARDCAE-KLKRSLFMVGEIGGNDYNYAFEQQKKTIKEAKDMVPQVVQAIKDAVQTVLGYGALRVVVPGNFPIGCFPICLTGFQTNDSSAYDEYHCLKEANEFSIYHNDYLKIAIEELKQEHPNATIIYGDYYNAFQWVFRHASNLGFDASSLLKSCCGIGGDYNFSLAKRCGASGVPVCSNPDQRISWDGVHPTQKAYHYMSDWLIRDLLPRLGCG 376
BLAST of XM_017382369.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6FXZ3 ((acetylajmalan esterase-like isoform X3 {ECO:0000313|RefSeq:XP_024926892.1}))
HSP 1 Score: 398.282 bits (1022), Expect = 1.132e-135
Identity = 199/351 (56.70%), Postives = 254/351 (72.36%), Query Frame = 0
Match: A0A6P6FXZ3 ((acetylajmalan esterase-like isoform X3 {ECO:0000313|RefSeq:XP_024926892.1}))
HSP 1 Score: 398.282 bits (1022), Expect = 1.132e-135
Identity = 199/351 (56.70%), Postives = 254/351 (72.36%), Query Frame = 0
Query: 21 RPTMCSNILKSCEIDKIYQLGDSVSDTGNRMIENPSDACSRLPYGESNPMGPTGRCSDGLLIIDYIALAAGIPLLNPYLKGKADFTHGVNFAVGGSTALSADTLAEKNIMVSGTKSSLSIQLEWMSAYFDSHCNADLDCRPGSLKNALFMVGEIGGNDYNFALAQGKTTKEAVNMVPEVVEIIKSAVRRVVGLGAARVIVPGNFPIGCFPVSLDMFKSNDESAYDEHQCLKELNDFAEFHNEYLQKAITTLQEENPATTIVYADYYNAFKTLLINAPRLGINATSVLKGCCGNIGSSSFTD-KGCGSSDVQVCSYPDQYISWDGVHLTETANSILSKWLVADILPKLNCGL 370
RP LK+C+ D IYQLGDS+SDTGN + E P+ SRLPYGE+ TGRCS+GLL+IDYIAL+AG+P LNPYL + FT GVNFAV GSTALS + LAEKNI+ T SSLS+QL WMS YF+S C + DC LK +LFMVGEIGGNDYNFA Q KT KEA+ +VP+VV+ IK A++ V+G GA +V+VPG FPIGCFP+ L F +ND SAYDE+ C+KELN+F+ +HN++L+ AI L++E+P TI+Y DYYNAF+ + +A LG +A+S+ K C G G ++ K CG+S V VCS PDQ+I WDGVHLT+ A +S WL+ D L +L CG+
Sbjct: 27 RPREGDLDLKACKFDAIYQLGDSLSDTGNIIYEEPTCFFSRLPYGETFFNRSTGRCSNGLLMIDYIALSAGLPFLNPYLSKDSLFTQGVNFAVAGSTALSPNVLAEKNIVSPFTNSSLSVQLHWMSTYFNSICLSARDCAE-KLKRSLFMVGEIGGNDYNFAFQQ-KTIKEAMAIVPQVVQAIKDAIQTVIGYGALKVVVPGCFPIGCFPIYLASFHTNDSSAYDEYHCVKELNEFSIYHNDHLKIAIEELKQEHPNVTIIYGDYYNAFQWVYRHASNLGFDASSLQKSCRGIGGDYNYNRAKPCGASGVPVCSNPDQHIIWDGVHLTQKAYYYISHWLIQDFLRQLRCGI 375
BLAST of XM_017382369.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B6I1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8536781.1}))
HSP 1 Score: 397.897 bits (1021), Expect = 1.982e-135
Identity = 205/377 (54.38%), Postives = 261/377 (69.23%), Query Frame = 0
Match: A0A5J5B6I1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8536781.1}))
HSP 1 Score: 397.897 bits (1021), Expect = 1.982e-135
Identity = 205/377 (54.38%), Postives = 261/377 (69.23%), Query Frame = 0
Query: 1 MAST---RVVFQLSVISFLYLN-SRPTMCS-NILKSCEIDKIYQLGDSVSDTGNRMIENPSDACS---RLPYGESNPMGPTGRCSDGLLIIDYIALAAGIPLLNPYLKGKADFTHGVNFAVGGSTALSADTLAEKNIMVSGTKSSLSIQLEWMSAYFDSHCNADLDCRPGSLKNALFMVGEIGGNDYNFALAQGKTTKEAVNMVPEVVEIIKSAVRRVVGLGAARVIVPGNFPIGCFPVSLDMFKSNDESAYDEHQCLKELNDFAEFHNEYLQKAITTLQEENPATTIVYADYYNAFKTLLINAPRLGINATSVLKGCCGNIGSSSFT-DKGCGSSDVQVCSYPDQYISWDGVHLTETANSILSKWLVADILPKLNC 368
MA+T + F L ++S L S+P+ ++ K+C ++IYQLGDS+SDTGN + E P A S RLPYGE+ TGRCS+GLL+IDY ALAAG+P LNPY A+F HG NFAV GSTALS LA KNI+ T SSL +QL WM YF S C+ + DC LKN+LFMVGEIGGNDYN+AL QGK+ +E +MV +VV IK+AVR+V+ GA RVIVPGNFPIGC P+ L FK+ND +AYDE+ CLKELN+ + +HN+++QKAI L++E P T IVY DYYNAF+ L NAP LG++ S+ K CCG G +F + CG DV VC P ++ISWDGVHLT+ A I++ L+ DI P+L C
Sbjct: 1 MATTTTQNLFFILVIVSAALLRLSQPSEAHIHLFKTCGFNQIYQLGDSISDTGNLIRETPIGAASPFARLPYGETFFNNATGRCSNGLLMIDYFALAAGLPFLNPYKNIDANFEHGANFAVAGSTALSTQILANKNILSPVTNSSLHVQLHWMRTYFHSICHNNRDCVE-KLKNSLFMVGEIGGNDYNYALFQGKSFEEVKSMVHDVVGAIKNAVRKVIHYGAVRVIVPGNFPIGCLPIYLTGFKTNDSAAYDEYHCLKELNELSMYHNDHVQKAIKDLKKEYPNTVIVYGDYYNAFQWLFHNAPYLGLDVASLQKACCGIGGEYNFNLTRMCGVPDVPVCVDPRRHISWDGVHLTQEAYKIMAGRLLRDIFPQLQC 376
BLAST of XM_017382369.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9H015 ((Uncharacterized protein {ECO:0000313|EMBL:SPD05322.1}))
HSP 1 Score: 397.512 bits (1020), Expect = 2.506e-135
Identity = 209/374 (55.88%), Postives = 262/374 (70.05%), Query Frame = 0
Match: A0A2N9H015 ((Uncharacterized protein {ECO:0000313|EMBL:SPD05322.1}))
HSP 1 Score: 397.512 bits (1020), Expect = 2.506e-135
Identity = 209/374 (55.88%), Postives = 262/374 (70.05%), Query Frame = 0
Query: 1 MASTRVVFQL--SVISFLYLNSRPTMCSNILKSCEIDKIYQLGDSVSDTGNRMIENPSDACSRLPYGESNPMGPTGRCSDGLLIIDYIALAAGIPLLNPYLKGKADFTHGV--NFAVGGSTALSADTLAEKNIMVSGTKSSLSIQLEWMSAYFDSHC-NADLDCRPGSLKNALFMVGEIGGNDYNFALAQGKTTKEAVNMVPEVVEIIKSAVRRVVGLGAARVIVPGNFPIGCFPVSLDMFKSNDESAYDEHQCLKELNDFAEFHNEYLQKAITTLQEENPATTIVYADYYNAFKTLLINAPRLGINATSVLKGCCGNIGSSSFT-DKGCGSSDVQVCSYPDQYISWDGVHLTETANSILSKWLVADILPKLNC 368
MA+T V L ++I+F L + ++ LK C D IYQLGDS+SDTGN + ENP+ A +RLPYGE++ TGRCS+GLL+IDYIAL+AGIP L+PYL A F G NFAV GSTAL A LAEKNI T SSL++QL+WMS +F+ C NAD DC L+ ALFMVGE+G NDYN+AL QGKT ++ NMVPEVV+ IK AV RV+G GAARV+VPGNFPIGC P+ L F++N+ +AYDE CL LND + +HN L++AI L++ENP IVY DYYNAF+ + +AP LG +A S K CCGN G F+ +K CG+ V VC PD+ ISWDGVHLT+ A ++ WL+ DILPKL C
Sbjct: 1 MATTNSVLSLLLTLIAFSLLLFPRCIGAHPLKVCMFDAIYQLGDSISDTGNLIRENPAVAFARLPYGETSFKKATGRCSNGLLMIDYIALSAGIPFLSPYLDKDALFVRGCGENFAVAGSTALPAQILAEKNISSPVTNSSLNVQLDWMSTHFNDICYNAD-DCIK-KLQTALFMVGEVGWNDYNYALFQGKTIEDVRNMVPEVVQAIKEAVTRVIGFGAARVVVPGNFPIGCSPIYLTAFQTNNSAAYDEFHCLLGLNDLSMYHNYQLKQAIKDLRKENPNAIIVYGDYYNAFQWVHHHAPLLGFDAASTQKSCCGNGGDYEFSLEKMCGAPGVPVCPNPDERISWDGVHLTQKAYRYMANWLIYDILPKLLC 372
| Match Name | Stats | Description |
|---|---|---|
| A0A438FK77 | E-Value: 2.222e-141, PID: 54.69 | (Acetylajmalan esterase {ECO:0000313|EMBL:RVW60399... [more] |
| D7U9W3 | E-Value: 5.150e-141, PID: 54.69 | (Uncharacterized protein {ECO:0000313|EMBL:CBI3952... [more] |
| A0A7J0G8G4 | E-Value: 8.355e-140, PID: 57.59 | (Uncharacterized protein {ECO:0000313|EMBL:GFZ0707... [more] |
| A0A7J0D9Z9 | E-Value: 1.811e-138, PID: 56.73 | (Uncharacterized protein {ECO:0000313|EMBL:GFS2973... [more] |
| A0A2R6Q707 | E-Value: 5.219e-138, PID: 56.73 | (Acetylajmalan esterase {ECO:0000313|EMBL:PSS03034... [more] |
| A0A7J0G8E5 | E-Value: 9.735e-138, PID: 56.16 | (SGNH hydrolase-type esterase superfamily protein ... [more] |
| A0A6P3ZN46 | E-Value: 9.236e-136, PID: 57.97 | (GDSL esterase/lipase At5g03980-like isoform X1 {E... [more] |
| A0A6P6FXZ3 | E-Value: 1.132e-135, PID: 56.70 | (acetylajmalan esterase-like isoform X3 {ECO:00003... [more] |
| A0A5J5B6I1 | E-Value: 1.982e-135, PID: 54.38 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8536... [more] |
| A0A2N9H015 | E-Value: 2.506e-135, PID: 55.88 | (Uncharacterized protein {ECO:0000313|EMBL:SPD0532... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |