Resource Type:
Polypeptide
Name:
XM_017383193.1
Identifier:
XM_017383193.1-protein
Sequence:
MSSIENAAAVAKIQESPAPNPVNIADAAPNDGATAALGASVVHAPPPPPL
PVVQTPPPNSSEPVAVPVSVSVVVPVAVPGSVNQPESVVVPAPAAVPVSV
FQPGSVVVPAPAAVPVSVFQPESVVVPAPAVVPVSVFQPESVVVHVPAQR
PTAAELVSQPAAERNGVVARRKRGRPRKYTPVNDQAIVAVSPVPAAAVTP
VPAAAVTPVPATAVTPVPPTAEQAQTGGGSSAADAQARSGKRGRGRPVGS
RNKAPSASRNVNPAVSGSAGMGFTPHIIVVQPGMDVLARLVSFSQVRAQT
VCVLSATGSIASVTLQQSSGSGMVTYEGRFEILSLVGSFLVTESGIHQGR
TGGLSVSLAAPDGSVLGGRVAGLLIAASPVQVIVGTFNEANQQAMGPGSN
GSAPPRHVSSVGGSPPSRATMGESSGGPVTPFNPSTGGYNNVNQQNVSNV
GWN
Sequence Length:
453
Sequence Checksum:
16a35d5373398ee57338672a460a0575
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017383193.1, derives from mRNA, XM_017383193.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017383193.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017383193.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835UK22 ((Uncharacterized protein {ECO:0000313|EMBL:KAG0463600.1}))
HSP 1 Score: 227.639 bits (579), Expect = 4.625e-68
Identity = 146/300 (48.67%), Postives = 180/300 (60.00%), Query Frame = 0
Match: A0A835UK22 ((Uncharacterized protein {ECO:0000313|EMBL:KAG0463600.1}))
HSP 1 Score: 227.639 bits (579), Expect = 4.625e-68
Identity = 146/300 (48.67%), Postives = 180/300 (60.00%), Query Frame = 0
Query: 166 GVVARRKRGRPRKYTPVNDQAIVAVSPVPAAAVTPVPAAAVTPVPATAVTPVPPTAEQAQTGGGSSAADAQARSG---KRGRGRPVGSRNKAPSASRNVNPAVSGSAGMGFTPHIIVVQPGMDVLARLVSFSQVRAQTVCVLSATGSIASVTLQQSSGS-GMVTYEGRFEILSLVGSFLVTESGIHQGRTGGLSVSLAAPDGSVLGGRVAGLLIAASPVQVIVGTF-----NEANQQAMGPGSN--GSAPPRHVSSVGG-SPPSRATMGESSGGPVTPFNPSTGGYNNVNQQNVSNVGWN 453
G ++KRGRPRKY P A+ A+T V PTA TGG S + A +G K+ RGRP GS K + GSAG GFTPHII V+ G DV ++++SFSQ + VC+LSA G+I++VTL+Q++ S G VTYEGRFEILSL GSFL+TESG + RTGGLSVSLA PDG VLGG VAGLL AASPVQV+V +F N+AN + G + G P + GG SPPSR T SSGGP +P NPST +NN NQQ++SN+ W
Sbjct: 89 GDTVKKKRGRPRKYGPDGTMAL-------------------------ALTTVSPTAATPGTGGFSPLSTGSAITGDPMKKARGRPPGSGKKQQMLAL-------GSAGTGFTPHIITVKAGEDVSSKVMSFSQHGTRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLTESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVVVASFMSEGKNDANHAHLFEGGSTVGKLTPIGGLTTGGSSPPSRGTPSASSGGPPSPLNPSTATFNNSNQQSLSNISWK 356
BLAST of XM_017383193.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835ULF0 ((Uncharacterized protein {ECO:0000313|EMBL:KAG0464995.1}))
HSP 1 Score: 223.787 bits (569), Expect = 1.189e-66
Identity = 145/300 (48.33%), Postives = 179/300 (59.67%), Query Frame = 0
Match: A0A835ULF0 ((Uncharacterized protein {ECO:0000313|EMBL:KAG0464995.1}))
HSP 1 Score: 223.787 bits (569), Expect = 1.189e-66
Identity = 145/300 (48.33%), Postives = 179/300 (59.67%), Query Frame = 0
Query: 166 GVVARRKRGRPRKYTPVNDQAIVAVSPVPAAAVTPVPAAAVTPVPATAVTPVPPTAEQAQTGGGSSAADAQARSG---KRGRGRPVGSRNKAPSASRNVNPAVSGSAGMGFTPHIIVVQPGMDVLARLVSFSQVRAQTVCVLSATGSIASVTLQQSSGS-GMVTYEGRFEILSLVGSFLVTESGIHQGRTGGLSVSLAAPDGSVLGGRVAGLLIAASPVQVIVGTF-----NEANQQAMGPGSN--GSAPPRHVSSVGG-SPPSRATMGESSGGPVTPFNPSTGGYNNVNQQNVSNVGWN 453
G ++KRGRPRKY P A+ A+T V PTA TGG S + A +G K+ RGRP GS K + GSAG GFTPHII V+ G DV ++++SFSQ + VC+LSA G+I++VTL+Q++ S G VTYEGRFEILSL GSFL+T SG + RTGGLSVSLA PDG VLGG VAGLL AASPVQV+V +F N+AN + G + G P + GG SPPSR T SSGGP +P NPST +NN NQQ++SN+ W
Sbjct: 89 GDTVKKKRGRPRKYGPDGTMAL-------------------------ALTTVSPTAATPGTGGFSPLSTGSAITGDPMKKARGRPPGSGKKQQMLAL-------GSAGTGFTPHIITVKAGEDVSSKVMSFSQHGTRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLTASGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVVVASFMSEGKNDANHAHLFEGGSTVGKLTPIGGLTTGGSSPPSRGTPSASSGGPPSPLNPSTATFNNSNQQSLSNISWK 356
BLAST of XM_017383193.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RMA9 (AT-hook motif nuclear-localized protein {ECO:0000256|RuleBase:RU367031})
HSP 1 Score: 219.935 bits (559), Expect = 3.454e-65
Identity = 143/295 (48.47%), Postives = 182/295 (61.69%), Query Frame = 0
Match: A0A2R6RMA9 (AT-hook motif nuclear-localized protein {ECO:0000256|RuleBase:RU367031})
HSP 1 Score: 219.935 bits (559), Expect = 3.454e-65
Identity = 143/295 (48.47%), Postives = 182/295 (61.69%), Query Frame = 0
Query: 166 GVVARRKRGRPRKYTPVNDQAIVAVSPVPAAAVTPVPAAAVTPVPATAVTPVPPTAEQAQTGGGSSAADAQARSGKRGRGRPVGSRNKAPSASRNVNPAVSGSAGMGFTPHIIVVQPGMDVLARLVSFSQVRAQTVCVLSATGSIASVTLQQSSGSG-MVTYEGRFEILSLVGSFLVTESGIHQGRTGGLSVSLAAPDGSVLGGRVAGLLIAASPVQVIVGTFNEANQQAMGPGSN---GSAPPRHVSSVGG----SPPSRATMGESSGGPVTPFNPSTGGYNNVNQQNVSNVGW 452
G ++KRGRPRKY P +A++ +P A T +P AA T P + TP +S S K+GRGRP P +S+ GSAG+GFTPHII V+ G DV ++++SFSQ + VCVLSA G+I++VTL+Q++ SG TYEGRFEILSL GSFL+TE G + RTGGLSVSLA PDG VLGG VAGLL AASPVQVIVG+F ++ P ++ SAPP+ VG SPPSR T+ ESSGGP +P N STG N+ N Q + ++ W
Sbjct: 80 GETVKKKRGRPRKYGP---DGTMALALMPTPATTAIPQAAGTFSPPSHRTP-------------TSGGPVSPTSSKKGRGRP-------PGSSKKQQMEALGSAGVGFTPHIITVKAGEDVSSKIMSFSQHGPRAVCVLSANGTISNVTLRQAATSGGTATYEGRFEILSLSGSFLLTEVGGQRSRTGGLSVSLAGPDGRVLGGCVAGLLTAASPVQVIVGSFFADGRKESKPVNHVEPLSAPPKTTPGVGATGASSPPSRGTLSESSGGPGSPLNHSTGACNS-NPQGMLSMPW 350
BLAST of XM_017383193.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3Y6S8 (AT-hook motif nuclear-localized protein {ECO:0000256|RuleBase:RU367031})
HSP 1 Score: 212.616 bits (540), Expect = 1.211e-62
Identity = 135/286 (47.20%), Postives = 175/286 (61.19%), Query Frame = 0
Match: A0A1S3Y6S8 (AT-hook motif nuclear-localized protein {ECO:0000256|RuleBase:RU367031})
HSP 1 Score: 212.616 bits (540), Expect = 1.211e-62
Identity = 135/286 (47.20%), Postives = 175/286 (61.19%), Query Frame = 0
Query: 169 ARRKRGRPRKYTPVNDQAIVAVSPVPAAAVTPVPAAAVTPVPATAVTPVPPTAEQAQTGGGSSAADAQARSGKRGRGRPVGSRNKAPSASRNVNPAVSGSAGMGFTPHIIVVQPGMDVLARLVSFSQVRAQTVCVLSATGSIASVTLQQSSGS-GMVTYEGRFEILSLVGSFLVTESGIHQGRTGGLSVSLAAPDGSVLGGRVAGLLIAASPVQVIVGTFNEANQQAMGPG-SNGSAPPRHVSSVGGSPPSRATMGESSGGPVTPFNPSTGGYNNVNQQNVSNVGW 452
A+RKRGRPRKY P VSP P + V + +P+PP A + K+GRGRP+GS K + + S +AG+GF PH+I ++ G DVLA+L+SFSQ +Q VC+LSA GSI++VTL Q++ S G VTYEGRFEIL+L GSFL++ESG + RTGGLSVSLA PDG VLGG VAGLL AA+ VQVIVG+F+ Q+ + PG S+ P ++S SPPS T+ ESSGG V+P N NN + V+N+ W
Sbjct: 74 AKRKRGRPRKYAPEGSTNPGMVSPPPPSQV----------AGSGFSSPLPPQAAVSAV--------------KKGRGRPLGSGRK----QQQLADIGSAAAGVGFRPHVITIKAGEDVLAKLMSFSQSSSQAVCILSANGSISNVTLWQAATSGGTVTYEGRFEILTLSGSFLLSESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAAAAVQVIVGSFSTEGQRQLKPGNSDAFGTPATLTSAARSPPSLGTLSESSGGTVSPHNQIVETSNN-SPSGVANLPW 330
BLAST of XM_017383193.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A836J7Z1 ((AT-hook motif nuclear-localized protein {ECO:0000313|EMBL:KAG5250186.1}))
HSP 1 Score: 214.542 bits (545), Expect = 1.265e-62
Identity = 141/301 (46.84%), Postives = 180/301 (59.80%), Query Frame = 0
Match: A0A836J7Z1 ((AT-hook motif nuclear-localized protein {ECO:0000313|EMBL:KAG5250186.1}))
HSP 1 Score: 214.542 bits (545), Expect = 1.265e-62
Identity = 141/301 (46.84%), Postives = 180/301 (59.80%), Query Frame = 0
Query: 161 AAERNGVVARRKRGRPRKYTPVNDQAIVAVSPVPAAAVTPVPAAAVTPVPATAVTPVPPTAEQAQTGGGSSAADAQARSG-------KRGRGRPVGSRNKAPSASRNVNPAVSGSAGMGFTPHIIVVQPGMDVLARLVSFSQVRAQTVCVLSATGSIASVTL-QQSSGSGMVTYEGRFEILSLVGSFLVTESGIHQGRTGGLSVSLAAPDGSVLGGRVAGLLIAASPVQVIVGTF--------NEANQQAMGPGSNGSAPPRHVSSVGGSPPSRATMGESSGGPVTPFNPSTGGYNNVNQQ 445
A G +RKRGRPRKY P A+ S + AVT + +A ++ PA + P PP A G + AA A G K+GRGRP GS K + GSAG+GFTPH+I V+ G DV A++VSFSQ + VC+LSA G+I++VTL QQ++ G VTYEGRFEIL+L GS+L +E+G + RTGGLSV L+ PDG VLGG VAGLL+AA+PVQV+V +F AN + P ++ PP S+ SP SR T+ ESSGGP +P N STG NN N Q
Sbjct: 84 AGRSGGEPMKRKRGRPRKYGPDGTMALAIASAPQSVAVTQLTSAGLSSPPAQPLVPTPPPGSDAGVGSPAGAAPPVALGGSVSPTGVKKGRGRPPGSTKKQKLDAL-------GSAGIGFTPHVITVKAGEDVSAKIVSFSQHGPRAVCILSANGAISNVTLRQQATSGGTVTYEGRFEILALSGSYLPSENGGQRSRTGGLSVCLSGPDGRVLGGSVAGLLMAAAPVQVVVSSFIADGLKESKSANHKEPSPATS-KVPPTGGSTGVSSPLSRETISESSGGPGSPLNQSTGACNNNNPQ 376
BLAST of XM_017383193.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4LQI8 (AT-hook motif nuclear-localized protein {ECO:0000256|RuleBase:RU367031} (Fragment))
HSP 1 Score: 212.616 bits (540), Expect = 2.364e-62
Identity = 142/295 (48.14%), Postives = 180/295 (61.02%), Query Frame = 0
Match: A0A6A4LQI8 (AT-hook motif nuclear-localized protein {ECO:0000256|RuleBase:RU367031} (Fragment))
HSP 1 Score: 212.616 bits (540), Expect = 2.364e-62
Identity = 142/295 (48.14%), Postives = 180/295 (61.02%), Query Frame = 0
Query: 170 RRKRGRPRKYTPVNDQAI-VAVSPVPAAAVTPVPAAAVTPVPA---TAVTPVPPTAEQAQTGGGSSAADAQARSGKRGRGRPVGSRNKAPSASRNVNPAVSGSAGMGFTPHIIVVQPGMDVLARLVSFSQVRAQTVCVLSATGSIASVTLQQSSGSG-MVTYEGRFEILSLVGSFLVTESGIHQGRTGGLSVSLAAPDGSVLGGRVAGLLIAASPVQVIVGTFNEANQQAMGP---GSNGSAPPRHVSSVG----GSPPSRATMGESSGGPVTPFNPSTGGYNNVNQQNVSNVGW 452
++KRGRPRKY P D AI +A++P A P PAA P P ++ TP P A S K+GRGRP P +S+ G+AG+GFTPH+I V+ G DV ++++SFSQ + VC+LSA G+I++VTL+Q++ SG TYEGRFEILSL GSFL+TE G H+ RTGGLSVSLA PDG VLGG VAGLL AASPVQVIVG+F ++ P + SA P+ G SPPS T+ ESSGG +P N STG NN N Q +S++ W
Sbjct: 88 KKKRGRPRKYGP--DGAISLALTP----ATAPRPAAVAQPTPTFSPSSHTPAP----------------ASPSSLKKGRGRP-------PGSSKKQQMEALGAAGVGFTPHVITVKTGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQAATSGGTATYEGRFEILSLSGSFLLTEVGGHRSRTGGLSVSLAGPDGRVLGGCVAGLLTAASPVQVIVGSFIADGRKESRPINQAESLSAQPKLAPGFGTTGASSPPSHGTLSESSGGAGSPLNHSTG--NNTNPQGMSSMPW 351
BLAST of XM_017383193.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9RT46 (AT-hook motif nuclear-localized protein {ECO:0000256|RuleBase:RU367031})
HSP 1 Score: 212.616 bits (540), Expect = 4.415e-62
Identity = 143/291 (49.14%), Postives = 182/291 (62.54%), Query Frame = 0
Match: A0A6I9RT46 (AT-hook motif nuclear-localized protein {ECO:0000256|RuleBase:RU367031})
HSP 1 Score: 212.616 bits (540), Expect = 4.415e-62
Identity = 143/291 (49.14%), Postives = 182/291 (62.54%), Query Frame = 0
Query: 170 RRKRGRPRKYTPVNDQAIVAVSPVPAAAVTPVPAAAVTPVPATAVTPVPPTAEQAQTGGGSSAADAQARSGKRGRGRPVGSRNKAPSASRNVNPAVSGSAGMGFTPHIIVVQPGMDVLARLVSFSQVRAQTVCVLSATGSIASVTLQQSSGSG-MVTYEGRFEILSLVGSFLVTESGIHQGRTGGLSVSLAAPDGSVLGGRVAGLLIAASPVQVIVGTF---NEANQQAMGPGSNGSAPPRHV---SSVGGSPPSRATMGESSGGPVTPFNPSTGGYNNVNQQNVSNVGWN 453
+RKRGRPRKY P A+ + P AAV+P + TG G+ A+ A A + K+ RGRP GS K A+ GSAG+GFTPH+I V+ G DV ++++SFSQ + VC+LSA G+I++VTL+Q++ SG VTYEGRFEILSL GSFL++ESG + RTGGLSVSLA PDG VLGG VAGLL AASPVQV+VG+F + + M P SAP + ++ SPPSR T+ ESSGGP +P N STG NN NQQ +SN+ W
Sbjct: 103 KRKRGRPRKYGPDGTMALALTTTSPTAAVSPGSGGFT----------------HSSTGAGNLASSASAEAMKKARGRPPGSGKKQQMAAL-------GSAGIGFTPHVITVKAGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLSESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVVVGSFIADGKKEPKQMTPSDPASAPGKLAPGGTTGANSPPSRGTLSESSGGPGSPLNQSTGTCNNSNQQGLSNMPWK 370
BLAST of XM_017383193.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3Z0I5 (AT-hook motif nuclear-localized protein {ECO:0000256|RuleBase:RU367031})
HSP 1 Score: 210.69 bits (535), Expect = 6.617e-62
Identity = 137/286 (47.90%), Postives = 174/286 (60.84%), Query Frame = 0
Match: A0A1S3Z0I5 (AT-hook motif nuclear-localized protein {ECO:0000256|RuleBase:RU367031})
HSP 1 Score: 210.69 bits (535), Expect = 6.617e-62
Identity = 137/286 (47.90%), Postives = 174/286 (60.84%), Query Frame = 0
Query: 169 ARRKRGRPRKYTPVNDQAIVAVSPVPAAAVTPVPAAAVTPVPATAVTPVPPTAEQAQTGGGSSAADAQARSGKRGRGRPVGSRNKAPSASRNVNPAVSGSAGMGFTPHIIVVQPGMDVLARLVSFSQVRAQTVCVLSATGSIASVTLQQSSGSG-MVTYEGRFEILSLVGSFLVTESGIHQGRTGGLSVSLAAPDGSVLGGRVAGLLIAASPVQVIVGTFNEANQQAMGPG-SNGSAPPRHVSSVGGSPPSRATMGESSGGPVTPFNPSTGGYNNVNQQNVSNVGW 452
A+RKRGRPRKY +SP P + V A + P +P PP A ++ KRGRGRP GS K + + S +AG+GF PH+I ++ G DVLA+L+SFSQ +Q VC+LSA GSI++VTL Q++ SG VTYEGRFEIL+L GSFL++ESG + RTGGLSVSLA PDG VLGG VAGLL AA+ VQVIVG+F+ Q+ PG S+ P ++S SPPS T+ ESSGGPV+P N N N V+N+ W
Sbjct: 74 AKRKRGRPRKYASEGSANPGMISPPPPSQV----AGSGFP------SPTPPQATESAV--------------KRGRGRPPGSGRK----QQQLADLGSAAAGVGFRPHVITIKAGEDVLAKLMSFSQSTSQAVCILSANGSISNVTLWQAATSGGTVTYEGRFEILTLSGSFLLSESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAAAAVQVIVGSFSTEGQRQRKPGNSDAFGTPATLTSAARSPPSLGTLSESSGGPVSPHNQVVETSN--NSPGVANLPW 329
BLAST of XM_017383193.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834GR60 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7140335.1}))
HSP 1 Score: 211.075 bits (536), Expect = 8.388e-62
Identity = 142/294 (48.30%), Postives = 179/294 (60.88%), Query Frame = 0
Match: A0A834GR60 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7140335.1}))
HSP 1 Score: 211.075 bits (536), Expect = 8.388e-62
Identity = 142/294 (48.30%), Postives = 179/294 (60.88%), Query Frame = 0
Query: 170 RRKRGRPRKYTPVNDQAIVAVSPVPAAAVTPVPAAAVTPVPA---TAVTPVPPTAEQAQTGGGSSAADAQARSGKRGRGRPVGSRNKAPSASRNVNPAVSGSAGMGFTPHIIVVQPGMDVLARLVSFSQVRAQTVCVLSATGSIASVTLQQSSGSG-MVTYEGRFEILSLVGSFLVTESGIHQGRTGGLSVSLAAPDGSVLGGRVAGLLIAASPVQVIVGTFNEANQQAMGP---GSNGSAPPRHVSSVG----GSPPSRATMGESSGGPVTPFNPSTGGYNNVNQQNVSNVGW 452
++KRGRPRKY P D AI ++ PA A P PAA P P ++ TP P A S K+GRGRP P +S+ G+AG+GFTPH+I V+ G DV ++++SFSQ + VC+LSA G+I++VTL+Q++ SG TYEGRFEILSL GSFL+TE G H+ RTGGLSVSLA PDG VLGG VAGLL AASPVQVIVG+F ++ P + SA P+ G SPPS T+ ESSGG +P N STG NN N Q +S++ W
Sbjct: 88 KKKRGRPRKYGP--DGAI-SLGLTPATA--PRPAAVAQPTPTFSPSSHTPAP----------------ASPSSLKKGRGRP-------PGSSKKQQMEALGAAGVGFTPHVITVKTGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQAATSGGTATYEGRFEILSLSGSFLLTEVGGHRSRTGGLSVSLAGPDGRVLGGCVAGLLTAASPVQVIVGSFIADGRKESRPINQAESLSAQPKLAPGFGTTGASSPPSHGTLSESSGGAGSPLNHSTG--NNTNPQGMSSMPW 351
BLAST of XM_017383193.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6ILD4 (AT-hook motif nuclear-localized protein {ECO:0000256|RuleBase:RU367031})
HSP 1 Score: 210.305 bits (534), Expect = 1.021e-61
Identity = 134/286 (46.85%), Postives = 174/286 (60.84%), Query Frame = 0
Match: A0A1J6ILD4 (AT-hook motif nuclear-localized protein {ECO:0000256|RuleBase:RU367031})
HSP 1 Score: 210.305 bits (534), Expect = 1.021e-61
Identity = 134/286 (46.85%), Postives = 174/286 (60.84%), Query Frame = 0
Query: 169 ARRKRGRPRKYTPVNDQAIVAVSPVPAAAVTPVPAAAVTPVPATAVTPVPPTAEQAQTGGGSSAADAQARSGKRGRGRPVGSRNKAPSASRNVNPAVSGSAGMGFTPHIIVVQPGMDVLARLVSFSQVRAQTVCVLSATGSIASVTLQQSSGSG-MVTYEGRFEILSLVGSFLVTESGIHQGRTGGLSVSLAAPDGSVLGGRVAGLLIAASPVQVIVGTFNEANQQAMGPG-SNGSAPPRHVSSVGGSPPSRATMGESSGGPVTPFNPSTGGYNNVNQQNVSNVGW 452
A+RKRGRPRKY P VSP+P + V + +P PP A ++ K+GRGRP GS K + + S +AG+GF PH+I ++ G DVLA+L+SFSQ +Q VC+LSA GSI++VTL Q++ SG VTYEGRFEIL+L GSFL++ESG + RTGGLSVSLA PDG VLGG VAGLL AA+ VQVIVG+F+ Q+ + PG S+ P ++S SPPS T+ SSGG V+P N NN + V+N+ W
Sbjct: 74 AKRKRGRPRKYAPEGSANPGMVSPLPPSQV----------AGSGFSSPTPPQAAESAV--------------KKGRGRPPGSGRK----QQQLADIGSAAAGVGFRPHVITIKAGEDVLAKLMSFSQSTSQAVCILSANGSISNVTLWQAATSGGTVTYEGRFEILTLSGSFLLSESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAAAAVQVIVGSFSTEGQRQLKPGNSDAFGTPATLTSAARSPPSLGTLSGSSGGTVSPHNQIVETSNN-SPSGVANLPW 330
| Match Name | Stats | Description |
|---|---|---|
| A0A835UK22 | E-Value: 4.625e-68, PID: 48.67 | (Uncharacterized protein {ECO:0000313|EMBL:KAG0463... [more] |
| A0A835ULF0 | E-Value: 1.189e-66, PID: 48.33 | (Uncharacterized protein {ECO:0000313|EMBL:KAG0464... [more] |
| A0A2R6RMA9 | E-Value: 3.454e-65, PID: 48.47 | AT-hook motif nuclear-localized protein {ECO:00002... [more] |
| A0A1S3Y6S8 | E-Value: 1.211e-62, PID: 47.20 | AT-hook motif nuclear-localized protein {ECO:00002... [more] |
| A0A836J7Z1 | E-Value: 1.265e-62, PID: 46.84 | (AT-hook motif nuclear-localized protein {ECO:0000... [more] |
| A0A6A4LQI8 | E-Value: 2.364e-62, PID: 48.14 | AT-hook motif nuclear-localized protein {ECO:00002... [more] |
| A0A6I9RT46 | E-Value: 4.415e-62, PID: 49.14 | AT-hook motif nuclear-localized protein {ECO:00002... [more] |
| A0A1S3Z0I5 | E-Value: 6.617e-62, PID: 47.90 | AT-hook motif nuclear-localized protein {ECO:00002... [more] |
| A0A834GR60 | E-Value: 8.388e-62, PID: 48.30 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7140... [more] |
| A0A1J6ILD4 | E-Value: 1.021e-61, PID: 46.85 | AT-hook motif nuclear-localized protein {ECO:00002... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |