XM_017385471.1

Resource Type: 
Polypeptide
Name: 
XM_017385471.1
Identifier: 
XM_017385471.1-protein
Sequence: 
MEKGCNVRCWDELLPDALGLIFDKLSLQEVLTVVPRVCKSWGRAVMGPYC
WQQIDIEEWSRYQPPENIDRMLQMLIRRSCGSLRKLCVTGLSTDRMYSFI
SVHAKTLRTLRIPRSTISDSMMKQVAGKFSSITYLDLSYCIHIGAPGLEV
IGKHCQFLSKLRRIMHPLEVIGKISQDDEALAIAATMPQLEHLEIAYLLV
STYSVVEILTNCRLLKLLDVRGCWNVSLDTKLVHNFPGLEVVGPLVVDHS
PDVSSWEGCSDYSTCSGYLAWNFVAGDADNYRDGISEDEHSIDNVEMWFY
NGLDAQDAGFDWPQSP
Sequence Length: 
316
Sequence Checksum: 
3dbf927ca9fe39d666898d73e709356a
View location in JBrowse: 
DCARv2_Chr3:38998163..38999993+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017385471.1, derives from mRNA, XM_017385471.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017385471.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017385471.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A0Y9 ((Uncharacterized protein {ECO:0000313|EMBL:MPA49341.1}))

HSP 1 Score: 462.611 bits (1189), Expect = 8.756e-163
Identity = 221/321 (68.85%), Postives = 270/321 (84.11%), Query Frame = 0
 
Query:    1 MEKGCNVRCWDELLPDALGLIFDKLSLQEVLTVVPRVCKSWGRAVMGPYCWQQIDIEEWSRYQPPENIDRMLQMLIRRSCGSLRKLCVTGLSTDRMYSFISVHAKTLRTLRIPRSTISDSMMKQVAGKFSSITYLDLSYCIHIGAPGLEVIGKHCQFLSKLRRIMHPLEVIGKISQDDEALAIAATMPQLEHLEIAYLLVSTYSVVEILTNCRLLKLLDVRGCWNVSLDTKLVHNFPGLEVVGPLVVDHSPDVSSWEGCSDYSTCSGYLAWNFVAGDADNY----RDGISEDEHSIDNVEMWFYNG-LDAQDAGFDWPQSP 316
            ME+GCN R WDEL+PDALGLIF  LSL+E+LTV+PRVCKSWG AVMGPYCWQ+IDIEEWS++  PEN+DRMLQMLI RSCGSLRKLC++GLSTD+ +SFI+ HAK+L+TLR+PRS ISDS+++QVAG+ SSIT+LD+SYC  IGAP LEVIGKHC+FL+ LRR MHPLEVI K+SQDDEALAIAATMP+L+HLE+AYLLV T SV+ IL NC  L+LLDVRGCWNV LD K + NF  L+VVGP+V  +   ++ W+ CSDYS  S Y+AW+FVAG+ D++     DG+ EDE ++++VEMWFY+G  DA DAGFDWPQSP
Sbjct:    1 MEEGCNFRHWDELIPDALGLIFRNLSLEEMLTVIPRVCKSWGNAVMGPYCWQEIDIEEWSQHCQPENLDRMLQMLIARSCGSLRKLCISGLSTDQSFSFIADHAKSLQTLRLPRSEISDSIVEQVAGRLSSITFLDVSYCRKIGAPALEVIGKHCKFLTGLRRTMHPLEVIDKLSQDDEALAIAATMPKLKHLEMAYLLVCTKSVLAILANCHELELLDVRGCWNVHLDEKFMKNFTRLKVVGPIVEHYG--MNGWDNCSDYSGSSSYMAWDFVAGEIDDFYDENSDGVWEDEQNMEDVEMWFYDGFFDAVDAGFDWPQSP 319
[Close]
BLAST of XM_017385471.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TC40 ((F-box protein FBW2-like isoform X1 {ECO:0000313|RefSeq:XP_027075280.1, ECO:0000313|RefSeq:XP_027075281.1}))

HSP 1 Score: 446.817 bits (1148), Expect = 2.117e-156
Identity = 215/319 (67.40%), Postives = 264/319 (82.76%), Query Frame = 0
 
Query:    1 MEKGCNVRCWDELLPDALGLIFDKLSLQEVLTVVPRVCKSWGRAVMGPYCWQQIDIEEWSRYQPPENIDRMLQMLIRRSCGSLRKLCVTGLSTDRMYSFISVHAKTLRTLRIPRSTISDSMMKQVAGKFSSITYLDLSYCIHIGAPGLEVIGKHCQFLSKLRRIMHPLEVIGKISQDDEALAIAATMPQLEHLEIAYLLVSTYSVVEILTNCRLLKLLDVRGCWNVSLDTKLVHNFPGLEVVGPLVVDHSPDVSSWEGCSDYSTCSGYLAWNFVAGDADNY---RDGISEDEHSIDNVEMWFYNGLDAQDAGFDWPQSP 316
            ME+GC+ R WDEL+PD LGLIF  LSL E+LTVVP VCKSW +AVMGPYCWQ+IDIEEWS++  PENID+MLQ+LI RSCGS RKLCV+G+S D  +++I+ HAK L+TLR+PRS IS S+++QVAG  S++T+LDLSYCI IGA  LE IGK+C+FL+ LRRIMHPLEVI K+SQDDEALAIA+TMP+L+HLEIAYLLVST SV+EILTNCR L+LLDVRGC+NV+LD   V  FP L++VGP VVD+  D++ W+ CSDYS  SGYLAW+FVAG  D+Y    DG   DE  I++VEMWFY+ ++A DAG+DWPQSP
Sbjct:   12 MEEGCDFRPWDELIPDTLGLIFRNLSLLEILTVVPGVCKSWRKAVMGPYCWQEIDIEEWSQHCSPENIDQMLQLLITRSCGSFRKLCVSGISNDLSFAYIANHAKCLQTLRLPRSQISHSIVEQVAGMLSTLTFLDLSYCIKIGAEALEAIGKNCKFLTGLRRIMHPLEVIDKLSQDDEALAIASTMPKLKHLEIAYLLVSTSSVIEILTNCRQLELLDVRGCFNVNLDENFVKKFPRLKLVGPNVVDYY-DMNGWDSCSDYSGSSGYLAWDFVAGMGDDYDEISDGYWGDEQQIEDVEMWFYDDVEAMDAGYDWPQSP 329
[Close]
BLAST of XM_017385471.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TZX6 ((Uncharacterized protein {ECO:0000313|EMBL:CDP01489.1}))

HSP 1 Score: 446.047 bits (1146), Expect = 2.474e-156
Identity = 215/319 (67.40%), Postives = 264/319 (82.76%), Query Frame = 0
 
Query:    1 MEKGCNVRCWDELLPDALGLIFDKLSLQEVLTVVPRVCKSWGRAVMGPYCWQQIDIEEWSRYQPPENIDRMLQMLIRRSCGSLRKLCVTGLSTDRMYSFISVHAKTLRTLRIPRSTISDSMMKQVAGKFSSITYLDLSYCIHIGAPGLEVIGKHCQFLSKLRRIMHPLEVIGKISQDDEALAIAATMPQLEHLEIAYLLVSTYSVVEILTNCRLLKLLDVRGCWNVSLDTKLVHNFPGLEVVGPLVVDHSPDVSSWEGCSDYSTCSGYLAWNFVAGDADNY---RDGISEDEHSIDNVEMWFYNGLDAQDAGFDWPQSP 316
            ME+GC+ R WDEL+PD LGLIF  LSL E+LTVVP VCKSW +AVMGPYCWQ+IDIEEWS++  PENID+MLQ+LI RSCGS RKLCV+G+S D  +++I+ HAK L+TLR+PRS IS S+++QVAG  S++T+LDLSYCI IGA  LE IGK+C+FL+ LRRIMHPLEVI K+SQDDEALAIA+TMP+L+HLEIAYLLVST SV+EILTNCR L+LLDVRGC+NV+LD   V  FP L++VGP VVD+  D++ W+ CSDYS  SGYLAW+FVAG  D+Y    DG   DE  I++VEMWFY+ ++A DAG+DWPQSP
Sbjct:    1 MEEGCDFRPWDELIPDTLGLIFRNLSLLEILTVVPGVCKSWRKAVMGPYCWQEIDIEEWSQHCSPENIDQMLQLLITRSCGSFRKLCVSGISNDLSFAYIANHAKCLQTLRLPRSQISHSIVEQVAGMLSTLTFLDLSYCIKIGAEALEAIGKNCKFLTGLRRIMHPLEVIDKLSQDDEALAIASTMPKLKHLEIAYLLVSTSSVIEILTNCRQLELLDVRGCFNVNLDENFVKKFPRLKLVGPNVVDYY-DMNGWDSCSDYSGSSGYLAWDFVAGMGDDYDEISDGYWGDEQQIEDVEMWFYDDVEAMDAGYDWPQSP 318
[Close]
BLAST of XM_017385471.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TA45 ((F-box protein FBW2-like isoform X2 {ECO:0000313|RefSeq:XP_027075287.1, ECO:0000313|RefSeq:XP_027075288.1}))

HSP 1 Score: 446.047 bits (1146), Expect = 2.474e-156
Identity = 215/319 (67.40%), Postives = 264/319 (82.76%), Query Frame = 0
 
Query:    1 MEKGCNVRCWDELLPDALGLIFDKLSLQEVLTVVPRVCKSWGRAVMGPYCWQQIDIEEWSRYQPPENIDRMLQMLIRRSCGSLRKLCVTGLSTDRMYSFISVHAKTLRTLRIPRSTISDSMMKQVAGKFSSITYLDLSYCIHIGAPGLEVIGKHCQFLSKLRRIMHPLEVIGKISQDDEALAIAATMPQLEHLEIAYLLVSTYSVVEILTNCRLLKLLDVRGCWNVSLDTKLVHNFPGLEVVGPLVVDHSPDVSSWEGCSDYSTCSGYLAWNFVAGDADNY---RDGISEDEHSIDNVEMWFYNGLDAQDAGFDWPQSP 316
            ME+GC+ R WDEL+PD LGLIF  LSL E+LTVVP VCKSW +AVMGPYCWQ+IDIEEWS++  PENID+MLQ+LI RSCGS RKLCV+G+S D  +++I+ HAK L+TLR+PRS IS S+++QVAG  S++T+LDLSYCI IGA  LE IGK+C+FL+ LRRIMHPLEVI K+SQDDEALAIA+TMP+L+HLEIAYLLVST SV+EILTNCR L+LLDVRGC+NV+LD   V  FP L++VGP VVD+  D++ W+ CSDYS  SGYLAW+FVAG  D+Y    DG   DE  I++VEMWFY+ ++A DAG+DWPQSP
Sbjct:    1 MEEGCDFRPWDELIPDTLGLIFRNLSLLEILTVVPGVCKSWRKAVMGPYCWQEIDIEEWSQHCSPENIDQMLQLLITRSCGSFRKLCVSGISNDLSFAYIANHAKCLQTLRLPRSQISHSIVEQVAGMLSTLTFLDLSYCIKIGAEALEAIGKNCKFLTGLRRIMHPLEVIDKLSQDDEALAIASTMPKLKHLEIAYLLVSTSSVIEILTNCRQLELLDVRGCFNVNLDENFVKKFPRLKLVGPNVVDYY-DMNGWDSCSDYSGSSGYLAWDFVAGMGDDYDEISDGYWGDEQQIEDVEMWFYDDVEAMDAGYDWPQSP 318
[Close]
BLAST of XM_017385471.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AKY6 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8530829.1}))

HSP 1 Score: 445.662 bits (1145), Expect = 4.243e-156
Identity = 224/321 (69.78%), Postives = 272/321 (84.74%), Query Frame = 0
 
Query:    1 MEKGCNVRCWDELLPDALGLIFDKLSLQEVLTVVPRVCKSWGRAVMGPYCWQQIDIEEWSRYQPPENIDRMLQMLIRRSCGSLRKLCVTGLSTDRMYSFISVHAKTLRTLRIPRSTISDSMMKQVAGKFSSITYLDLSYCIHIGAPGLEVIGKHCQFLSKLRRIMHPLEVIGKISQDDEALAIAATMPQLEHLEIAYLLVSTYSVVEILTNCRLLKLLDVRGCWNVSLDTKLVHNFPGLEVVGPLVVDHSPDVSSWEGCSDYSTCSGYLAWNFVAGDADNYR----DGISEDEHSIDNVEMWFYNGL-DAQDAGFDWPQSP 316
            ME+GC++R WDEL+PDALGLIF  LSLQEVLTV+PRVCKSWG AVMGPYCWQ+IDIEEWS++  PEN+DRMLQMLI RSC SLRKLCV+GLS+D+ +SFI+ HAK+L+TLR+PRS ISDS++++VAG+ SS+T LDLSYC  IGAPGLE IGKHC+FL++LRR MHPLE+I K+SQDDEALAIAATMP+L HLE+AYLLV T SV+ IL NCR L+LLDVRGCWNV LD K V NF GL+V+GP +VDH   ++ W+  SDYS  S Y+AW+FVAG+ D+Y     DG+ EDE ++++VEMWFY+GL DA DAGFDWPQSP
Sbjct:    1 MEEGCDLRHWDELIPDALGLIFRNLSLQEVLTVIPRVCKSWGNAVMGPYCWQEIDIEEWSQHCQPENLDRMLQMLIARSCDSLRKLCVSGLSSDQSFSFIADHAKSLQTLRLPRSEISDSIVERVAGRLSSLTVLDLSYCRKIGAPGLEAIGKHCKFLTRLRRTMHPLEMIDKLSQDDEALAIAATMPKLRHLEMAYLLVGTKSVLAILENCRDLELLDVRGCWNVHLDEKFVKNFTGLKVIGP-IVDHYG-MNGWDSSSDYSGSSSYMAWDFVAGEMDDYYDEILDGVWEDEQNMEDVEMWFYDGLFDAVDAGFDWPQSP 319
[Close]
BLAST of XM_017385471.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TLU3 ((F-box protein FBW2-like isoform X2 {ECO:0000313|RefSeq:XP_027078536.1, ECO:0000313|RefSeq:XP_027078537.1}))

HSP 1 Score: 444.506 bits (1142), Expect = 1.085e-155
Identity = 214/319 (67.08%), Postives = 263/319 (82.45%), Query Frame = 0
 
Query:    1 MEKGCNVRCWDELLPDALGLIFDKLSLQEVLTVVPRVCKSWGRAVMGPYCWQQIDIEEWSRYQPPENIDRMLQMLIRRSCGSLRKLCVTGLSTDRMYSFISVHAKTLRTLRIPRSTISDSMMKQVAGKFSSITYLDLSYCIHIGAPGLEVIGKHCQFLSKLRRIMHPLEVIGKISQDDEALAIAATMPQLEHLEIAYLLVSTYSVVEILTNCRLLKLLDVRGCWNVSLDTKLVHNFPGLEVVGPLVVDHSPDVSSWEGCSDYSTCSGYLAWNFVAGDADNY---RDGISEDEHSIDNVEMWFYNGLDAQDAGFDWPQSP 316
            ME+GC+ R WDEL+PD LGLIF  LSL E+LTVVP VCKSW +AVMGPYCWQ+IDIEEWS++  PENID+MLQ+LI RSCGS RKLCV+G+S D  +++I+ HAK L+TLR+PRS IS S+++QVA   S++T+LDLSYCI IGA  LE IGK+C+FL+ LRRIMHPLEVI K+SQDDEALAIA+TMP+L+HLEIAYLLVST SV+EILTNCR L+LLDVRGC+NV+LD   V  FP L++VGP VVD+  D++ W+ CSDYS  SGYLAW+FVAG  D+Y    DG   DE  I++VEMWFY+ ++A DAG+DWPQSP
Sbjct:    1 MEEGCDFRPWDELIPDTLGLIFRNLSLLEILTVVPGVCKSWRKAVMGPYCWQEIDIEEWSQHCSPENIDQMLQLLITRSCGSFRKLCVSGISNDLSFAYIANHAKCLQTLRLPRSQISHSIVEQVAAMLSTLTFLDLSYCIKIGAEALEAIGKNCKFLTGLRRIMHPLEVIDKLSQDDEALAIASTMPKLKHLEIAYLLVSTSSVIEILTNCRQLELLDVRGCFNVNLDENFVKKFPRLKLVGPNVVDYY-DMNGWDSCSDYSGSSGYLAWDFVAGMGDDYDEISDGYWGDEQQIEDVEMWFYDDVEAMDAGYDWPQSP 318
[Close]
BLAST of XM_017385471.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9U990 ((F-box protein FBW2 {ECO:0000313|RefSeq:XP_011097547.1, ECO:0000313|RefSeq:XP_011097548.1}))

HSP 1 Score: 444.121 bits (1141), Expect = 1.268e-155
Identity = 213/316 (67.41%), Postives = 257/316 (81.33%), Query Frame = 0
 
Query:    1 MEKGCNVRCWDELLPDALGLIFDKLSLQEVLTVVPRVCKSWGRAVMGPYCWQQIDIEEWSRYQPPENIDRMLQMLIRRSCGSLRKLCVTGLSTDRMYSFISVHAKTLRTLRIPRSTISDSMMKQVAGKFSSITYLDLSYCIHIGAPGLEVIGKHCQFLSKLRRIMHPLEVIGKISQDDEALAIAATMPQLEHLEIAYLLVSTYSVVEILTNCRLLKLLDVRGCWNVSLDTKLVHNFPGLEVVGPLVVDHSPDVSSWEGCSDYSTCSGYLAWNFVAGDADNYRDGISEDEHSIDNVEMWFYNGLDAQDAGFDWPQSP 316
            M++G + R WDEL+PDALGLIF  LSL EVLTVVPRVCKSWGRAVMGPYCWQ+IDIEEWS  + PE +DRML++LI RSCGSLRKL  +GL++D    FI+ HA++L+TLR+PRS I+DS+M++ AG  S+IT LDLSYCIHIGAP LE IGKHC+ L+ LRR+MHP+EVIGK+SQDDEALAIAATMP+L+HLEI YLLV T SVVEIL NC  L+LLDVRGCWNVSLD + +  FP L+VVGPLV D+  D++ W+ CSDYS  S YLAW+FVAGD     D   EDEH I++VEM FY+ ++  DAG+DWPQSP
Sbjct:    1 MDEGSDFRKWDELIPDALGLIFKNLSLLEVLTVVPRVCKSWGRAVMGPYCWQEIDIEEWSTNRKPEIVDRMLRLLIPRSCGSLRKLSFSGLASDESIFFIANHAQSLQTLRLPRSKINDSVMEKAAGMLSTITSLDLSYCIHIGAPALEAIGKHCKSLTTLRRVMHPVEVIGKLSQDDEALAIAATMPRLKHLEITYLLVDTSSVVEILKNCNQLELLDVRGCWNVSLDEEFMKRFPRLKVVGPLVEDYC-DMNRWDSCSDYSGSSAYLAWDFVAGDYAEMSDDFWEDEHQIEDVEMRFYDDVNVVDAGYDWPQSP 315
[Close]
BLAST of XM_017385471.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TJ39 ((F-box protein FBW2-like isoform X1 {ECO:0000313|RefSeq:XP_027078528.1, ECO:0000313|RefSeq:XP_027078529.1}))

HSP 1 Score: 444.891 bits (1143), Expect = 1.303e-155
Identity = 214/319 (67.08%), Postives = 263/319 (82.45%), Query Frame = 0
 
Query:    1 MEKGCNVRCWDELLPDALGLIFDKLSLQEVLTVVPRVCKSWGRAVMGPYCWQQIDIEEWSRYQPPENIDRMLQMLIRRSCGSLRKLCVTGLSTDRMYSFISVHAKTLRTLRIPRSTISDSMMKQVAGKFSSITYLDLSYCIHIGAPGLEVIGKHCQFLSKLRRIMHPLEVIGKISQDDEALAIAATMPQLEHLEIAYLLVSTYSVVEILTNCRLLKLLDVRGCWNVSLDTKLVHNFPGLEVVGPLVVDHSPDVSSWEGCSDYSTCSGYLAWNFVAGDADNY---RDGISEDEHSIDNVEMWFYNGLDAQDAGFDWPQSP 316
            ME+GC+ R WDEL+PD LGLIF  LSL E+LTVVP VCKSW +AVMGPYCWQ+IDIEEWS++  PENID+MLQ+LI RSCGS RKLCV+G+S D  +++I+ HAK L+TLR+PRS IS S+++QVA   S++T+LDLSYCI IGA  LE IGK+C+FL+ LRRIMHPLEVI K+SQDDEALAIA+TMP+L+HLEIAYLLVST SV+EILTNCR L+LLDVRGC+NV+LD   V  FP L++VGP VVD+  D++ W+ CSDYS  SGYLAW+FVAG  D+Y    DG   DE  I++VEMWFY+ ++A DAG+DWPQSP
Sbjct:   12 MEEGCDFRPWDELIPDTLGLIFRNLSLLEILTVVPGVCKSWRKAVMGPYCWQEIDIEEWSQHCSPENIDQMLQLLITRSCGSFRKLCVSGISNDLSFAYIANHAKCLQTLRLPRSQISHSIVEQVAAMLSTLTFLDLSYCIKIGAEALEAIGKNCKFLTGLRRIMHPLEVIDKLSQDDEALAIASTMPKLKHLEIAYLLVSTSSVIEILTNCRQLELLDVRGCFNVNLDENFVKKFPRLKLVGPNVVDYY-DMNGWDSCSDYSGSSGYLAWDFVAGMGDDYDEISDGYWGDEQQIEDVEMWFYDDVEAMDAGYDWPQSP 329
[Close]
BLAST of XM_017385471.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9H5X3 (F-box domain-containing protein {ECO:0000259|Pfam:PF00646})

HSP 1 Score: 441.425 bits (1134), Expect = 2.256e-154
Identity = 213/320 (66.56%), Postives = 260/320 (81.25%), Query Frame = 0
 
Query:    1 MEKGCNVRCWDELLPDALGLIFDKLSLQEVLTVVPRVCKSWGRAVMGPYCWQQIDIEEWSRYQPPENIDRMLQMLIRRSCGSLRKLCVTGLSTDRMYSFISVHAKTLRTLRIPRSTISDSMMKQVAGKFSSITYLDLSYCIHIGAPGLEVIGKHCQFLSKLRRIMHPLEVIGKISQDDEALAIAATMPQLEHLEIAYLLVSTYSVVEILTNCRLLKLLDVRGCWNVSLDTKLVHNFPGLEVVGPLVVDHSPDVSSWEGCSDYSTCSGYLAWNFVAGDADN----YRDGISEDEHSIDNVEMWFYNGLDAQDAGFDWPQSP 316
            M++G + R WDEL+PDALGLIF  LSL EVLTVVPRVCKSW RA+MGPYCWQ+IDI+EWSR   PE +DRMLQ+LI RSCGSLRKL V+G+ +D+   FI+ HA++LRTLR+PRS I+DS+M++ AG  S+IT LDLSYCI+IGA  LE IGKHC+ L+ LRR+MHPLEVI K SQDDEALAIA TMP+L+HLEIAYLL+ T SVVEIL NC+ L+LLDVRGCWNV+LD K +  FP L+VVGPLV+D   D++ W+ CSDYS  SGYLAW+FVAGD D+      DG  ED+  +++VEMWFY+  +A+DAGFDWPQSP
Sbjct:    1 MDEGTDFRKWDELIPDALGLIFKNLSLLEVLTVVPRVCKSWNRAIMGPYCWQEIDIDEWSRSCKPEIVDRMLQLLISRSCGSLRKLSVSGIVSDQSILFIANHAQSLRTLRLPRSEINDSIMERTAGSLSAITCLDLSYCINIGAQALEAIGKHCKSLTSLRRVMHPLEVINKHSQDDEALAIATTMPKLKHLEIAYLLIDTSSVVEILKNCKNLELLDVRGCWNVNLDEKFIKKFPKLKVVGPLVMD-CYDMNGWDNCSDYSGSSGYLAWDFVAGDLDDDYAEMLDGFWEDDPPLEDVEMWFYDDFNAEDAGFDWPQSP 319
[Close]
BLAST of XM_017385471.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BVG2 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8546788.1}))

HSP 1 Score: 434.491 bits (1116), Expect = 9.648e-152
Identity = 212/318 (66.67%), Postives = 258/318 (81.13%), Query Frame = 0
 
Query:    1 MEKGCNVRCWDELLPDALGLIFDKLSLQEVLTVVPRVCKSWGRAVMGPYCWQQIDIEEWSRYQPPENIDRMLQMLIRRSCGSLRKLCVTGLSTDRMYSFISVHAKTLRTLRIPRSTISDSMMKQVAGKFSSITYLDLSYCIHIGAPGLEVIGKHCQFLSKLRRIMHPLEVIGKISQDDEALAIAATMPQLEHLEIAYLLVSTYSVVEILTNCRLLKLLDVRGCWNVSLDTKLVHNFPGLEVVGPLVVDHSPDVSSWEGCSDYSTCSGYLAWNFVAGDADNYRDGIS----EDEHSIDNVEMWFYNG-LDAQDAGFDWP 313
            ME G N + WD+L+PDALGLIF  LSLQE+LTV+P VCKSWG  VMGPYCWQ+IDIEEWSR+  PE +D+MLQMLI RSC SLRKLCV+GLSTDR +S I+ HAK+L+TLR+P S IS+S+++QVAG+ SS+T+LD+SYC  IGAP LE IGKHC+FL++LRR MHPLE+I K+SQDDEALAIAATMP+L+HLE+AYLLVST SV+ IL NCR L+LLDVRGCWNV LD K V NF  L+VVGPLV  H  + + W+ C DYS  S Y+AW+FVAG+ D+Y D IS    ED+  I++VEMWFY+   +A DAGFDWP
Sbjct:    1 MEGGFNFQHWDQLIPDALGLIFRHLSLQELLTVIPGVCKSWGNVVMGPYCWQEIDIEEWSRHCRPEKLDQMLQMLIARSCSSLRKLCVSGLSTDRSFSLIADHAKSLQTLRLPSSEISNSIVEQVAGRLSSLTFLDVSYCRMIGAPALEAIGKHCKFLTRLRRTMHPLEMIDKLSQDDEALAIAATMPKLKHLELAYLLVSTKSVLAILANCRELELLDVRGCWNVYLDEKFVKNFSRLKVVGPLVDGH--ETNGWDTCLDYSGSSSYMAWDFVAGEMDDYYDEISDGFWEDDQYIEDVEMWFYDDFFEAVDAGFDWP 316
Match NameStatsDescription
A0A5B7A0Y9E-Value: 8.756e-163, PID: 68.85(Uncharacterized protein {ECO:0000313|EMBL:MPA4934... [more]
A0A6P6TC40E-Value: 2.117e-156, PID: 67.40(F-box protein FBW2-like isoform X1 {ECO:0000313|R... [more]
A0A068TZX6E-Value: 2.474e-156, PID: 67.40(Uncharacterized protein {ECO:0000313|EMBL:CDP0148... [more]
A0A6P6TA45E-Value: 2.474e-156, PID: 67.40(F-box protein FBW2-like isoform X2 {ECO:0000313|R... [more]
A0A5J5AKY6E-Value: 4.243e-156, PID: 69.78(Uncharacterized protein {ECO:0000313|EMBL:KAA8530... [more]
A0A6P6TLU3E-Value: 1.085e-155, PID: 67.08(F-box protein FBW2-like isoform X2 {ECO:0000313|R... [more]
A0A6I9U990E-Value: 1.268e-155, PID: 67.41(F-box protein FBW2 {ECO:0000313|RefSeq:XP_0110975... [more]
A0A6P6TJ39E-Value: 1.303e-155, PID: 67.08(F-box protein FBW2-like isoform X1 {ECO:0000313|R... [more]
A0A2G9H5X3E-Value: 2.256e-154, PID: 66.56F-box domain-containing protein {ECO:0000259|Pfam:... [more]
A0A5J5BVG2E-Value: 9.648e-152, PID: 66.67(Uncharacterized protein {ECO:0000313|EMBL:KAA8546... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.