XM_017382774.1 | CarrotOmics

Resource Type:

Polypeptide

Name:

XM_017382774.1

Identifier:

XM_017382774.1-protein

Sequence:

MEKDLVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAE
KDKLHESFAEEMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDL
FYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEGDYNMTFQ
IEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPDL
TDSSVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNS
NWHPFKQVFKDEKLQEMIDENDQELQELRNQWGDAAYESVVKALLELNEY
NPSGRYVVSELWNYKECRKATLKEVIVCLVQQLKSLKSLKRRR

Sequence Length:

343

Sequence Checksum:

459b680e0150203c769f240d11904fbb

View location in JBrowse:

DCARv2_Chr3:39521464..39526456+

Organism:

Daucus carota subspecies sativus

Relationship:

There is 1 relationship.
Relationships
The polypeptide, XM_017382774.1, derives from mRNA, XM_017382774.1.

Blast Results:

The following BLAST results are available for this feature:

BLAST of XM_017382774.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR

BLAST of XM_017382774.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10

[Close]

BLAST of XM_017382774.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BC66 (XH domain-containing protein {ECO:0000259|Pfam:PF03469})

HSP 1 Score: 431.409 bits (1108), Expect = 1.196e-149
Identity = 212/343 (61.81%), Postives = 281/343 (81.92%), Query Frame = 0

Query:    1 MEKDLVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAEKDKLHESFAEEMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDLFYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEGDYNMTFQIEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPDLTDSSVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNSNWHPFKQVFKDEKLQEMIDENDQELQELRNQWGDAAYESVVKALLELNEYNPSGRYVVSELWNYKECRKATLKEVIVCLVQQLKSLKSLKRRR 343
            M+ +++ E ++AR LVVSLAKEVD KNQ+LWE+ER  +E S  L RM+AEKD+LH+++ +EMRKMQFI  ++E+LK + EC+++K+   G+ENEKL  +L  ++KELEQ+  EL+KREAE  +ERK  L EKEKLK+Q P+E DY +T Q++DL  +LAEK +EL+DME LNQTLI++E MSN +LQEARKEL+NV+ D+ D + VGVKRMGEV+QKPFQDACL K+S E+ E+R+MEL S WQ  V++ +WHPFK+  +D KLQE+ID+ND +L+ELR+ WG+A Y++VV ALLELNEYNPSGRYVVSELWN+KE R+A+LKEVI  ++QQLK+LKSLKRRR
Sbjct:    1 MDNEVLNEFQKARSLVVSLAKEVDVKNQRLWEMERNCSETSATLDRMIAEKDRLHQAYVDEMRKMQFIGLQNEKLKCKLECQMEKMHFIGLENEKLKNELESQRKELEQRAKELEKREAENNLERKNLLVEKEKLKAQNPVESDYGLTIQMDDLREDLAEKVDELHDMETLNQTLILRERMSNHELQEARKELINVVRDVLDGATVGVKRMGEVDQKPFQDACLHKYSSEDWEVRSMELCSFWQENVSDPSWHPFKKTIEDGKLQEIIDDNDSKLKELRSLWGEAIYKAVVNALLELNEYNPSGRYVVSELWNFKEGRRASLKEVIERIIQQLKTLKSLKRRR 343

[Close]

BLAST of XM_017382774.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BJR6 ((Putative domain XH {ECO:0000313|EMBL:MPA69152.1}) (Fragment))

HSP 1 Score: 430.639 bits (1106), Expect = 2.763e-148
Identity = 209/343 (60.93%), Postives = 278/343 (81.05%), Query Frame = 0

Query:    1 MEKDLVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAEKDKLHESFAEEMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDLFYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEGDYNMTFQIEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPDLTDSSVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNSNWHPFKQVFKDEKLQEMIDENDQELQELRNQWGDAAYESVVKALLELNEYNPSGRYVVSELWNYKECRKATLKEVIVCLVQQLKSLKSLKRRR 343
            M  ++++E ++AR LVVSLAKEVD KNQ+LWE+ERK +E S  LGRM+AEKD++H+++ EEMRKMQFI  ++E+L Y+ EC++KK+   G +NEKL  +L  ++KE+EQ+  EL+KREA+  +ERK  L EKEKLK+Q P+  DY++ FQI+ L   LAEK +ELNDME L+QTLI++E MSN +LQEARKEL+NVLPD+ D + VGVKRMGEV+QKPFQDACL K+S E+ E+R++EL S WQ  V + +WHPFK+  +D KLQE+ID++D +L+ELR+ WG A Y++VV ALLELN+YNPSGRYVVSELWN+KE R+A+LKEVI C++QQLK+ K LKRRR
Sbjct:   74 MNDEVLKEFQKARSLVVSLAKEVDVKNQRLWEMERKCDETSATLGRMIAEKDRMHQAYVEEMRKMQFIGLQNEKLNYQLECQMKKMHFIGQQNEKLKNELESQRKEVEQRAKELEKREAQNNLERKDLLVEKEKLKAQNPVGSDYSLIFQIDALRENLAEKVDELNDMETLSQTLILRERMSNHELQEARKELINVLPDVLDGATVGVKRMGEVDQKPFQDACLHKYSNEDWEVRSVELCSFWQQNVGDPSWHPFKKTIEDGKLQEIIDKDDSKLKELRSVWGGAVYKAVVDALLELNDYNPSGRYVVSELWNFKEGRRASLKEVIECIIQQLKTAKPLKRRR 416

[Close]

BLAST of XM_017382774.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RTE5 ((Factor of DNA methylation like {ECO:0000313|EMBL:PSS33302.1}))

HSP 1 Score: 422.165 bits (1084), Expect = 6.195e-146
Identity = 208/344 (60.47%), Postives = 282/344 (81.98%), Query Frame = 0

Query:    1 MEKDLVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAEKDKLHESFAEEMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDLFYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEGD-YNMTFQIEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPDLTDSSVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNSNWHPFKQVFKDEKLQEMIDENDQELQELRNQWGDAAYESVVKALLELNEYNPSGRYVVSELWNYKECRKATLKEVIVCLVQQLKSLKSLKRRR 343
            ME +++EEL++ARRL +SLAKEVD KN +LWE+ERK +E    LGRM+AEKD+LH++FAEEMRKM+FI  ++E+LK E EC+++ I    ++NEKL  DL  +++ELEQQ  EL+K +A+ ++E++  L EKEKLK+Q   EGD Y++  QI+ L  ELAEK ++LNDME LNQTLI++EHMSN +LQ+ARKEL++VLP++ D++ +GVKRMGEV+QKPFQD C Q+FS E+ E+R++E SSLWQ  V + +W PF+++ KD KLQE+IDE+D +L+ELR+ WG+AAY++V  ALLELNEYNPSGRYVV ELWN+KE R+A+LKEVI C++QQLK+LKSLKRRR
Sbjct:    1 MENEILEELQRARRLAMSLAKEVDVKNHRLWEMERKCDETLATLGRMIAEKDRLHQAFAEEMRKMEFIGLQNEKLKLELECQMRNIHFMRLQNEKLKDDLLNQRQELEQQAKELEKHKAKVDLEKQNLLVEKEKLKAQNLFEGDDYSLNIQIDALKEELAEKADDLNDMENLNQTLILREHMSNVELQDARKELISVLPNVLDTTTIGVKRMGEVDQKPFQDVCSQRFSGEDWEVRSVEQSSLWQENVKDPSWQPFRKMMKDGKLQEIIDEDDCKLKELRHLWGEAAYDAVGNALLELNEYNPSGRYVVKELWNFKEGRRASLKEVIDCIIQQLKTLKSLKRRR 344

[Close]

BLAST of XM_017382774.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PLB5 ((Factor of DNA methylation like {ECO:0000313|EMBL:PSR93113.1}))

HSP 1 Score: 418.313 bits (1074), Expect = 2.025e-144
Identity = 205/344 (59.59%), Postives = 279/344 (81.10%), Query Frame = 0

Query:    1 MEKDLVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAEKDKLHESFAEEMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDLFYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEGD-YNMTFQIEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPDLTDSSVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNSNWHPFKQVFKDEKLQEMIDENDQELQELRNQWGDAAYESVVKALLELNEYNPSGRYVVSELWNYKECRKATLKEVIVCLVQQLKSLKSLKRRR 343
            ME +++EEL++ARRL +SLAKEVD KN +LWE+ERK +E S  LGRM+AEKD+LH++FAEEMRKM+FI  ++E+LK E EC+++ I S  ++NEKL  DL  ++ ELEQQ  EL+K+ A+ ++E++    EKEKLK+Q   EGD Y++  +I+ L  ELAEK ++LNDME LN+TLI++EHMSN +LQ+ARKEL+NVLP++ D++ +GVKRMGEV+QKPFQD C Q+F+ E+ E+R++E SSLWQ  V + +W PF+++ KD KLQE IDE+D +L+ELR  WG+A Y++V  ALLELNEYNPSGRY+V ELWN+KE R+A+LKEVI C++QQLK+LKSLKRRR
Sbjct:    1 MENEILEELQRARRLAMSLAKEVDVKNHRLWEMERKCDEMSATLGRMIAEKDRLHQAFAEEMRKMEFIGLQNEKLKLELECQMRNIHSMRLQNEKLKDDLLSQRLELEQQAKELEKQNAKVDLEKQNLHVEKEKLKAQNLFEGDNYSLNIKIDVLKEELAEKVDDLNDMETLNRTLILREHMSNVELQDARKELINVLPNVLDTTTIGVKRMGEVDQKPFQDVCSQRFTGEDWEVRSVEQSSLWQENVKDPSWQPFRKMMKDGKLQERIDEDDCKLKELRRLWGEAVYDAVANALLELNEYNPSGRYIVKELWNFKEGRRASLKEVIECIIQQLKTLKSLKRRR 344

[Close]

BLAST of XM_017382774.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DKC6 ((XH/XS domain-containing protein {ECO:0000313|EMBL:GFS37039.1}))

HSP 1 Score: 417.927 bits (1073), Expect = 2.811e-144
Identity = 207/344 (60.17%), Postives = 280/344 (81.40%), Query Frame = 0

Query:    1 MEKDLVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAEKDKLHESFAEEMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDLFYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEGD-YNMTFQIEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPDLTDSSVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNSNWHPFKQVFKDEKLQEMIDENDQELQELRNQWGDAAYESVVKALLELNEYNPSGRYVVSELWNYKECRKATLKEVIVCLVQQLKSLKSLKRRR 343
            ME +++EEL++ARRL  SLAKEVD KN +LWE+ERK +E    LGRM+AEKD+LH++FAEEMRKM+FI  ++E+LK E EC+++ I    ++NEKL  DL  +++ELEQQ  EL+K +A+ ++E++  L EKEKLK+Q   EGD Y++  QI+ L  ELAEK ++LNDME LNQTLI++EHMSN +LQ+ARKEL++VLP++ D++ +GVKRMGEV+QKPFQD C Q+FS E+ E+R++E SSLWQ  V + +W PF+++ KD KL+E+IDE+D +L+ELR  WG+AAY++V  ALLELNEYNPSGRYVV ELWN+KE R+A+LKEVI C++QQLK+LKSLKRRR
Sbjct:    1 MENEILEELQRARRLAKSLAKEVDVKNHRLWEMERKCDETLATLGRMIAEKDRLHQAFAEEMRKMEFIGLQNEKLKLELECQMRNIHFMRLQNEKLKDDLLNQRQELEQQAKELEKHKAKVDLEKQNLLVEKEKLKAQNLFEGDDYSLNIQIDALKEELAEKADDLNDMENLNQTLILREHMSNVELQDARKELISVLPNVFDTTTIGVKRMGEVDQKPFQDVCSQRFSGEDWEVRSVEQSSLWQENVKDPSWQPFRKMMKDGKLREIIDEDDCKLKELRRLWGEAAYDAVGNALLELNEYNPSGRYVVKELWNFKEGRRASLKEVIDCIIQQLKTLKSLKRRR 344

[Close]

BLAST of XM_017382774.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LVZ7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7149038.1}))

HSP 1 Score: 416.387 bits (1069), Expect = 2.125e-142
Identity = 215/376 (57.18%), Postives = 276/376 (73.40%), Query Frame = 0

Query:    1 MEKDLVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAEKDKLHESFAE---------------------------------EMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDLFYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEGDYNMTFQIEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPDLTDSSVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNSNWHPFKQVFKDEKLQEMIDENDQELQELRNQWGDAAYESVVKALLELNEYNPSGRYVVSELWNYKECRKATLKEVIVCLVQQLKSLKSLKRRR 343
            ME ++VEEL++ R L +SLAKEVD KNQ+LWELERK++E S  LGRM+AEKD+LH++FA+                                 EMRKM+FI  ++E+LK E EC+++ +    ++NEKL  DL  + +ELEQQ  EL+K+  + ++ERK  LAEKEKLK Q   E DY++  Q++ L  ELAEK ++L+DME LNQTLI++EHMSN +LQ+ARKEL+NVLP++ D   +GVKRMGEV+QKPFQD CLQ+FS E+ E+RA+E SSLWQ KV +  W PFK++ KD KLQE+IDE D +L+ELR  WG+AAY SVV ALLELNEYNPSGRYVV ELWN+KE R+A LKEV+ C+VQQLKSLKSLKRRR
Sbjct:   59 MENEIVEELRRTRTLAMSLAKEVDVKNQRLWELERKYDETSATLGRMIAEKDRLHQAFADGISCSLQMLEMFLLYHRAGYRSYFPSLTYQVLAEMRKMEFIGVQNEKLKLELECQMRNMHFMRLQNEKLKDDLVNQSQELEQQAKELEKQRGKVDLERKNLLAEKEKLKDQNGFEDDYSLNIQLDALKEELAEKVDDLHDMETLNQTLILREHMSNVELQDARKELINVLPNVLDIVTIGVKRMGEVDQKPFQDVCLQRFSGEDWEVRAVEQSSLWQEKVKDPGWQPFKKMTKDGKLQEIIDEEDSKLKELRRLWGEAAYNSVVNALLELNEYNPSGRYVVKELWNFKEGRRARLKEVVDCIVQQLKSLKSLKRRR 434

[Close]

BLAST of XM_017382774.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6LWQ5 (XH domain-containing protein {ECO:0000259|Pfam:PF03469})

HSP 1 Score: 400.979 bits (1029), Expect = 1.506e-137
Identity = 201/340 (59.12%), Postives = 269/340 (79.12%), Query Frame = 0

Query:    5 LVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAEKDKLHESFAEEMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDLFYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEGDYNMTFQIEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPDLTDS-SVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNSNWHPFKQVFKDEKLQEMIDENDQELQELRNQWGDAAYESVVKALLELNEYNPSGRYVVSELWNYKECRKATLKEVIVCLVQQLKSLKSLKRRR 343
            +V EL++AR LVV+LA+EVD KNQ++WE+ER   E S+ L  M+AEKD+++ +F+EEMRKMQ I Q++ +LK E EC+I  +     E+EKL  ++  ++KELEQ+ +EL KRE++ + ER  F  EKEK+ +Q P E DY+M+  I  L   L EK EEL+DM+ LNQTLI++EHMSN++LQ ARKEL+NVLP + +S +++G+KRMGEV QKPFQD C+QKFS ++ E+R++ELSSLWQ KVNN NWHPFKQV +D K+QE+IDE+D +L+EL++QWG+ A  +VV ALLELNEYNPSGRYV+SELWN+KE RKA LKEVI  L+QQLK+ +SLKRRR
Sbjct:    6 MVSELRKARGLVVNLAREVDLKNQRIWEMERHNEEISSRLNSMIAEKDRMNHAFSEEMRKMQVIGQQNAKLKTELECQISSMHLLVQESEKLKDEVACQRKELEQKTNELQKRESQLDNERASFYIEKEKI-AQNPYESDYSMSVHINGLRDRLTEKEEELHDMDNLNQTLILREHMSNNELQAARKELINVLPQILESNTIIGLKRMGEVAQKPFQDVCMQKFSAQDWELRSVELSSLWQDKVNNPNWHPFKQVVRDGKMQEIIDEDDSDLRELKSQWGEEACNAVVNALLELNEYNPSGRYVISELWNFKEGRKAELKEVIKYLIQQLKASRSLKRRR 344

[Close]

BLAST of XM_017382774.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1MIK7 ((Domain XH {ECO:0000313|EMBL:PWA61110.1}))

HSP 1 Score: 400.593 bits (1028), Expect = 2.247e-137
Identity = 198/343 (57.73%), Postives = 274/343 (79.88%), Query Frame = 0

Query:    2 EKDLVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAEKDKLHESFAEEMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDLFYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEGDYNMTFQIEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPDLTDS-SVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNSNWHPFKQVFKDEKLQEMIDENDQELQELRNQWGDAAYESVVKALLELNEYNPSGRYVVSELWNYKECRKATLKEVIVCLVQQLKSLKSLKRRR 343
            E  +V EL++AR + VSLA+EVD KNQ LWE+E+     S+ L  +++EKD+++ SF+EEMRKMQ I Q++ +LK + EC++  +     E+EKL +++ Y++K+LEQ+ +EL+KRE++ + ER+ F   KEK++ Q PL+ +Y+++  I +L ++L EK EEL+DM+ LNQTLI++EHMSN++LQ ARKEL+NVLP + DS +V+G+KRMGEV QKPFQD C+QKFS +E E+R++ELSSLWQ KVNN NWHPFKQ  KD K+QE++DE+D  L+EL++QWG+ A ++VV ALLELNEYNPSGRYVVSELWN+KE RKATLKEV+ CL+ QLK+ KSLKRRR
Sbjct:    3 ESKVVMELRKARGIAVSLAREVDMKNQTLWEMEKHVQHISSQLHSLISEKDRMNHSFSEEMRKMQLIGQQNAKLKTDLECQLSSMNLLVQESEKLKEEVAYERKQLEQKAAELEKRESQLDDERQSFYIAKEKIE-QNPLDSNYSISVHINELRNKLTEKEEELHDMDNLNQTLILREHMSNNELQAARKELINVLPQVLDSMTVIGLKRMGEVAQKPFQDVCMQKFSAQEWELRSVELSSLWQDKVNNPNWHPFKQAIKDGKVQEIVDEDDSHLKELKSQWGEEACKAVVNALLELNEYNPSGRYVVSELWNFKERRKATLKEVVNCLIHQLKANKSLKRRR 344

[Close]

BLAST of XM_017382774.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6JQY9 (XH domain-containing protein {ECO:0000259|Pfam:PF03469})

HSP 1 Score: 399.823 bits (1026), Expect = 3.945e-137
Identity = 209/343 (60.93%), Postives = 272/343 (79.30%), Query Frame = 0

Query:    2 EKDLVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAEKDKLHESFAEEMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDLFYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEGDYNMTFQIEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPD-LTDSSVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNSNWHPFKQVFKDEKLQEMIDENDQELQELRNQWGDAAYESVVKALLELNEYNPSGRYVVSELWNYKECRKATLKEVIVCLVQQLKSLKSLKRRR 343
            E  LV EL++AR L V LA+EVD KNQ+LWE+ER   E S+ L  M+AEKD+++ SF+EEMRKMQ +  ++ +LK E EC++ K+     E+EKL +++ Y++KELE + +ELDKRE++ E+ERK F  EKEK+ +Q PL+ +Y M+  I DL  +LAEK EEL+DM++LNQTLI++EHMSN++LQ ARKEL+NVLP  L  +S++G+KRMGEV QKPFQD CLQ++S ++ EMR++ELSSLWQ KVN  NWHPFKQ  KD KLQE+IDE+D  L+EL++QWG+    +VVKALLELNEYN SGRYVVSELWN+KE RKA+LKEVI CLV QLK+ KSLKRRR
Sbjct:    3 EGKLVSELRKARSLAVGLAREVDMKNQRLWEMERHSEEISSRLHSMIAEKDRMNHSFSEEMRKMQVLGSQNTKLKTELECQLSKMHVLFQESEKLKEEVAYQRKELELRANELDKRESQLEIERKSFYKEKEKI-AQNPLDSEYGMSVLINDLREKLAEKEEELHDMDILNQTLILREHMSNNELQAARKELINVLPQVLEGTSIIGLKRMGEVAQKPFQDVCLQRYSSQDWEMRSVELSSLWQDKVNTPNWHPFKQAVKDGKLQEIIDEDDSHLRELKSQWGEEVCNAVVKALLELNEYNSSGRYVVSELWNFKENRKASLKEVIDCLVHQLKASKSLKRRR 344

[Close]

BLAST of XM_017382774.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251U4F1 ((Uncharacterized domain XH {ECO:0000313|EMBL:OTG18227.1}))

HSP 1 Score: 399.438 bits (1025), Expect = 5.587e-137
Identity = 198/340 (58.24%), Postives = 268/340 (78.82%), Query Frame = 0

Query:    5 LVEELKQARRLVVSLAKEVDFKNQKLWELERKFNEASTALGRMVAEKDKLHESFAEEMRKMQFIEQKSEQLKYESECKIKKIQSNGVENEKLIQDLFYKQKELEQQKSELDKREAEFEVERKKFLAEKEKLKSQVPLEGDYNMTFQIEDLMSELAEKTEELNDMEVLNQTLIMKEHMSNDQLQEARKELLNVLPDLTDS-SVVGVKRMGEVNQKPFQDACLQKFSIEEAEMRAMELSSLWQIKVNNSNWHPFKQVFKDEKLQEMIDENDQELQELRNQWGDAAYESVVKALLELNEYNPSGRYVVSELWNYKECRKATLKEVIVCLVQQLKSLKSLKRRR 343
            +V E+++AR L V+LA+EVD KNQK+WE+ER   + S+ L  M+AEKD+++ +F+EEMRKMQ I  ++ +LK E EC+I  +     E+E L +++  ++KELEQ+ +EL KRE++ + ER  F  EKEK+ +Q P + DY+MT  I  L   L EK EEL+DM+ LNQTLI++EHMSN++LQ ARKEL+NVLP + +S SV+G+KRMGEV QKPFQD C+Q+FS ++ E+R++ELSSLWQ KVNN NWHPFKQ  KD ++QE+IDE+D +L+EL++QWG+ A ++VV ALLELNEYNPSGRYV+SELWN+KE RKA LKEVI CL+QQLK+ +SLKRRR
Sbjct:    7 MVSEVRKARALAVNLAREVDMKNQKIWEMERYIEDISSRLNSMIAEKDRMNHAFSEEMRKMQVIGMQNAKLKSELECQISNMHLLVQESENLKEEVACQRKELEQRANELQKRESQLDNERTSFYLEKEKI-AQNPFDSDYSMTVHINGLRDRLTEKEEELHDMDNLNQTLILREHMSNNELQAARKELINVLPHILESNSVIGLKRMGEVVQKPFQDVCMQRFSAQDWELRSVELSSLWQDKVNNPNWHPFKQAVKDGRMQEIIDEDDSDLRELKSQWGEEACKAVVNALLELNEYNPSGRYVISELWNFKEGRKANLKEVIECLIQQLKASRSLKRRR 345


Match Name	Stats	Description
A0A5J5BC66	E-Value: 1.196e-149, PID: 61.81	XH domain-containing protein {ECO:0000259\|Pfam:PF0... [more]
A0A5B7BJR6	E-Value: 2.763e-148, PID: 60.93	(Putative domain XH {ECO:0000313\|EMBL:MPA69152.1})... [more]
A0A2R6RTE5	E-Value: 6.195e-146, PID: 60.47	(Factor of DNA methylation like {ECO:0000313\|EMBL:... [more]
A0A2R6PLB5	E-Value: 2.025e-144, PID: 59.59	(Factor of DNA methylation like {ECO:0000313\|EMBL:... [more]
A0A7J0DKC6	E-Value: 2.811e-144, PID: 60.17	(XH/XS domain-containing protein {ECO:0000313\|EMBL... [more]
A0A834LVZ7	E-Value: 2.125e-142, PID: 57.18	(Uncharacterized protein {ECO:0000313\|EMBL:KAF7149... [more]
A0A5N6LWQ5	E-Value: 1.506e-137, PID: 59.12	XH domain-containing protein {ECO:0000259\|Pfam:PF0... [more]
A0A2U1MIK7	E-Value: 2.247e-137, PID: 57.73	(Domain XH {ECO:0000313\|EMBL:PWA61110.1})[more]
A0A2J6JQY9	E-Value: 3.945e-137, PID: 60.93	XH domain-containing protein {ECO:0000259\|Pfam:PF0... [more]
A0A251U4F1	E-Value: 5.587e-137, PID: 58.24	(Uncharacterized domain XH {ECO:0000313\|EMBL:OTG18... [more]

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100	The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR	This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.