Resource Type:
Polypeptide
Name:
XM_017387544.1
Identifier:
XM_017387544.1-protein
Sequence:
MIEFWRFNQHGLAIFMLMICLLGQKIQFCLTLNQQGVPLLKEGVVDPGSW
NGAESLNKNVVIWNRAVAGNVFHRRLLDIDVVDAPRRYSLRRQIASLFPP
KTIKALPSSAQPPSPSPSPSPSPVPSPVPSPSPSAAQIPEVTVPSGPPSR
PSSPFPENSPGSDDEQSSRGSGSKHHLAITLSAALGGSALLLLLASGIYF
CRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTS
ATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHK
NFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRII
MGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKD
MQASPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEM
VDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAE
EAVPRLSPLWWAELEIISSEGL
Sequence Length:
522
Sequence Checksum:
75e7923a0e0225b7607e8afbda802aa0
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017387544.1, derives from mRNA, XM_017387544.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017387544.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017387544.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3FW73 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 535.413 bits (1378), Expect = 0.000e+0
Identity = 287/506 (56.72%), Postives = 346/506 (68.38%), Query Frame = 0
Match: A0A1R3FW73 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 535.413 bits (1378), Expect = 0.000e+0
Identity = 287/506 (56.72%), Postives = 346/506 (68.38%), Query Frame = 0
Query: 41 KEGVVDPGSWNGAESLNKNVVIWN--RAVAGNVFHRRLLDIDVVDAPR-RYSLRRQIASLFPPKTIKALPSSAQ---------PPSPSPSPSPSPVPSPVPSPSPSAAQ--IPEVTVPSGPPSRPSSPFPENSPGSDDEQSSRGSGSKHHLAITLSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDMQA-----------SPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEG 521
+G +D SW G + + VV+ N R+ + RLL AP YS S P PS + PS + + SP+ PS P+P+PS +P +VP+ S S H I L A++GG+ LL++ G Y +++KVS V+PWATGLSGQLQKAFVTGVP LKR+EL AACEDFSNV+ +S GTVYKGTLS GVEIAV S+AV+S K+W +NLE+QFRKKI LS+VNHKNFVNL+GYCEED+PFTRM+VFEYAPNGTLFEHLHI+ESEHLDW MR+RIIMG+AYCLEH+HQL PPIPH +LNSSAV+LTEDYAAK+SD WNEI + D +A S ESNVYSFGVLLFE+VTGR+PY+VD +LEDWASDYLR DQPL EMVD L SFD EQLE++GEVIKSCCH P+QRP MK V ARL+EIT I + A+P+LSPLWWAELEI+S+E
Sbjct: 32 NDGALDHCSWFGVQCSDGKVVLLNIARSEDKDTVQSRLLQELAAPAPFINYSKIFPPYSQPPGPPSSVEPSIDRNVTRGGFIVDPSNNNTESPNADPSHAPAPTPSNNNTVLPNASVPTT------------------SGSKSSGSSSKHRTILL-ASIGGAVFLLVVIVGTYLFKTSKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELVAACEDFSNVIGSSTIGTVYKGTLSNGVEIAVASVAVKSDKDWSKNLETQFRKKIDTLSKVNHKNFVNLLGYCEEDEPFTRMMVFEYAPNGTLFEHLHIKESEHLDWAMRLRIIMGMAYCLEHIHQLNPPIPHNNLNSSAVNLTEDYAAKISDPCFWNEITASDREADRKNIPDSPLESLESNVYSFGVLLFEIVTGRMPYLVDDGSLEDWASDYLRRDQPLTEMVDPTLNSFDREQLEKLGEVIKSCCHPEPRQRPDMKEVGARLREITAITPDGAIPKLSPLWWAELEIMSAEA 518
BLAST of XM_017387544.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7I3V6 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0
Identity = 273/462 (59.09%), Postives = 334/462 (72.29%), Query Frame = 0
HSP 2 Score: 49.2914 bits (116), Expect = 1.863e-3
Identity = 30/70 (42.86%), Postives = 38/70 (54.29%), Query Frame = 0
Match: A0A7J7I3V6 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0
Identity = 273/462 (59.09%), Postives = 334/462 (72.29%), Query Frame = 0
Query: 63 WNRAVAGNVFHRRLLDIDVVDAP---RRYSLRRQIASLFPPKTIKALPSSAQPPSPSPSPSPSPVPSPVPSPSPSAAQIPEVTVPSGPPSRPSSPFPENSPGSDDEQSSRGSGSKHHLAITLSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDMQASPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEG 521
WN A G+ HRRLL ++ P S P + S PP+P+ P PV + +PSP+ + SSP + SGSKH + I LS A+GG+AL L+ G++FC+ NKVS VRPWATG+SGQLQKAFVTGVP LKR+ELE ACEDFSNV+S+S+ GTVYKGTLS GVEIAVTS+AV SAK+W LE QFR KI LS+VNHKNFVNL+GYC ED+PFTRM+VFEYAPNGTLFEHLHI+E+EHLDW RMRI MG+AYCL+H+HQL PPI HK+LNSSAV LTEDYAAK+SDFG W+E+A+ +M+++ ESN+YSFGVLLFE++TG+LPY VDS +LEDWASDYLRG++ EMVD L SF EQLE+IG+VI+SC H NPKQRP ++ VTARL+EIT I + A P+ SPLWWAELEI+S++
Sbjct: 260 WNTAQTGDAVHRRLLQEQPINLPINEPVPSQFPSPPPSPSPSSESPSYSPTLPPAPAVYAFPPPVSAAMPSPAENN----------------SSPV-------------KRSGSKHQVLI-LSLAIGGTALSALVI-GLFFCQGNKVSVVRPWATGISGQLQKAFVTGVPKLKRSELETACEDFSNVISSSSIGTVYKGTLSNGVEIAVTSVAVASAKDWSNILEVQFRNKIDTLSKVNHKNFVNLLGYCVEDEPFTRMLVFEYAPNGTLFEHLHIKEAEHLDWVTRMRITMGMAYCLDHMHQLTPPIAHKNLNSSAVHLTEDYAAKVSDFGFWSEVAAAEMESNRESNLYSFGVLLFEMITGKLPYSVDSGSLEDWASDYLRGEKSFREMVDPTLKSFQVEQLEKIGDVIRSCVHPNPKQRPQIREVTARLREITEIGPDGAKPKASPLWWAELEILSADA 690
HSP 2 Score: 49.2914 bits (116), Expect = 1.863e-3
Identity = 30/70 (42.86%), Postives = 38/70 (54.29%), Query Frame = 0
Query: 1 MIEFWRFNQHGLAIFMLMICLLGQKIQFCLTLNQQGVPLL--KEGVV-DP----GSWN---GAESLNKNV 60
MIE W F H L I M+M CLL + C +LN QG+ LL +E VV DP +WN G +N N+
Sbjct: 74 MIELWGFRDHRLPILMVMACLLYPNLNLCCSLNDQGLALLRFRERVVSDPFGALSNWNDDVGVGVINPNL 143
BLAST of XM_017387544.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3I025 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 532.332 bits (1370), Expect = 0.000e+0
Identity = 252/352 (71.59%), Postives = 294/352 (83.52%), Query Frame = 0
Match: A0A1R3I025 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 532.332 bits (1370), Expect = 0.000e+0
Identity = 252/352 (71.59%), Postives = 294/352 (83.52%), Query Frame = 0
Query: 181 LSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDMQA-----------SPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEG 521
L AA+GG+ LL++ G Y +++KVS V+PWATGLSGQLQKAFVTGVP LKR+EL AACEDFSNV+ +S GTVYKGTLS GVEIAV S+AV+SAK+W +NLE+QFRKKI LS+VNHKNFVNL+GYCEED+PFTRM+VFEYAPNGTLFEHLHI+ESEHLDW MR+RIIMG+AYCLEH+HQL PPIPH +LNSSAV+LTEDYAAK+SD WNEI + D +A S ESNVYSFGVLLFE+VTGR+PY+VD +LEDWASDYLR DQPL EMVD L SFD EQLE++GEVIKSCCH P+QRP MK V ARL+EIT I + A+P+LSPLWWAELEI+S+E
Sbjct: 291 LFAAIGGAVFLLVVIVGTYLFKTSKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELVAACEDFSNVIGSSTIGTVYKGTLSNGVEIAVASVAVKSAKDWSKNLETQFRKKIDTLSKVNHKNFVNLLGYCEEDEPFTRMMVFEYAPNGTLFEHLHIKESEHLDWAMRLRIIMGMAYCLEHIHQLNPPIPHNNLNSSAVNLTEDYAAKISDPCFWNEITASDREADRKNIPDSPLESLESNVYSFGVLLFEIVTGRMPYLVDDGSLEDWASDYLRRDQPLAEMVDPTLNSFDREQLEKLGEVIKSCCHPEPRQRPDMKEVGARLREITAITPDGAIPKLSPLWWAELEIMSAEA 642
BLAST of XM_017387544.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4T720 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 531.946 bits (1369), Expect = 0.000e+0
Identity = 289/519 (55.68%), Postives = 361/519 (69.56%), Query Frame = 0
Match: V4T720 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 531.946 bits (1369), Expect = 0.000e+0
Identity = 289/519 (55.68%), Postives = 361/519 (69.56%), Query Frame = 0
Query: 39 LLKEGVVDPGSWNGA----ESLNKNVVIWNRAVAGNVFHRRLLDI----DVVDAPRRYSLRRQIASL-----FPPKTIKA-------LPSSAQPPSPSP----SPSPSPVPSPVPSPSPSAAQIPEVTVPSGPPSRPSSPFPENSPGSDDEQSSRGSGSKHHLAITLSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDM-----------QASPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEGL 522
+L E VD G + A +S + + WN + + RRLL I ++ D R + R + L PP + + SS + S SP +P+P+P P+ P+P+PS +++P RPSS S Q S GS SKH I + + G A+L++ GIY CRSNKVS V+PWATGLSGQLQKAFVTGVP LKR+ELEAACEDFSNV+ +S GTVYKGTLS GVEIAV S++V SAK+WP+NLE QFRKKI LS+VNHKNFVNLIG+CEE++PFTRM+VFEYAPNGTLFEH+HI+ESEHLDWGMR+RI MG+AYCLEH+HQL PPI H LNSSAV LTEDYAAKLSD WNEIA +M AS ESNVY+FGVLLFE+VTGRLPY+VD+ +LEDWA+DYL G QPL + VD L+SFDEEQLE++GE+IKSC +P++RP M+++ A L+EIT I + A+P+LSPLWWAE+EI+S+E +
Sbjct: 98 VLSESQVDEGQLSSAAKKEQSWYERSIKWNGVLDEDTVQRRLLQIHPFRNLKD--RNFGNARTSSPLPSSDAIPPTAVASSNDTKGNATSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPS------LSIP-----RPSS--------SQSLQKSGGSSSKH---IAILGGVIGGAILVVAIVGIYLCRSNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEAI 592
BLAST of XM_017387544.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4SML4 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 530.02 bits (1364), Expect = 0.000e+0
Identity = 289/519 (55.68%), Postives = 361/519 (69.56%), Query Frame = 0
Match: V4SML4 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 530.02 bits (1364), Expect = 0.000e+0
Identity = 289/519 (55.68%), Postives = 361/519 (69.56%), Query Frame = 0
Query: 39 LLKEGVVDPGSWNGA----ESLNKNVVIWNRAVAGNVFHRRLLDI----DVVDAPRRYSLRRQIASL-----FPPKTIKA-------LPSSAQPPSPSP----SPSPSPVPSPVPSPSPSAAQIPEVTVPSGPPSRPSSPFPENSPGSDDEQSSRGSGSKHHLAITLSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDM-----------QASPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEGL 522
+L E VD G + A +S + + WN + + RRLL I ++ D R + R + L PP + + SS + S SP +P+P+P P+ P+P+PS +++P RPSS S Q S GS SKH I + + G A+L++ GIY CRSNKVS V+PWATGLSGQLQKAFVTGVP LKR+ELEAACEDFSNV+ +S GTVYKGTLS GVEIAV S++V SAK+WP+NLE QFRKKI LS+VNHKNFVNLIG+CEE++PFTRM+VFEYAPNGTLFEH+HI+ESEHLDWGMR+RI MG+AYCLEH+HQL PPI H LNSSAV LTEDYAAKLSD WNEIA +M AS ESNVY+FGVLLFE+VTGRLPY+VD+ +LEDWA+DYL G QPL + VD L+SFDEEQLE++GE+IKSC +P++RP M+++ A L+EIT I + A+P+LSPLWWAE+EI+S+E +
Sbjct: 170 VLSESQVDEGQLSSAAKKEQSWYERSIKWNGVLDEDTVQRRLLQIHPFRNLKD--RNFGNARTSSPLPSSDAIPPTAVASSNDTKGNATSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPS------LSIP-----RPSS--------SQSLQKSGGSSSKH---IAILGGVIGGAILVVAIVGIYLCRSNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEAI 664
BLAST of XM_017387544.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ATU8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 530.02 bits (1364), Expect = 0.000e+0
Identity = 249/359 (69.36%), Postives = 301/359 (83.84%), Query Frame = 0
HSP 2 Score: 61.2326 bits (147), Expect = 2.844e-7
Identity = 32/83 (38.55%), Postives = 44/83 (53.01%), Query Frame = 0
Match: A0A5B7ATU8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 530.02 bits (1364), Expect = 0.000e+0
Identity = 249/359 (69.36%), Postives = 301/359 (83.84%), Query Frame = 0
Query: 168 SRGSGSKHHLAITLSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKL-----SDFGLWNEIASKDMQASPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEG 521
++ S S H+ + LSA +GGSALL++L GI+FC+ NKV+AV+PWATGLSGQLQKAFVTGVP LKR+ELE ACEDFSNV+ +S+ GTVYKGTLS GVEIAV S+AV SAK+W NLE+QFR KI LS++NHKNFVNL+GYCEE++PFTRM+VFEYAPNGTLFEHLH++E+EHLDWGMRMRI MG+AYCLEH+HQL PPI K+L SSAV+LTEDYAAK+ SDFG WNE+A+ +M+ PESNVYSFGV LFE++TGRLPY VD ++ED ASDYLRG++PL EMVD L S EQLE+IGEVIKSC H +PKQRPAM+ VTA L++IT I + A+P+ SPLWWAELEI+S+E
Sbjct: 289 AKKSDSNHYRVLILSAVIGGSALLIILVIGIFFCQGNKVAAVKPWATGLSGQLQKAFVTGVPKLKRSELETACEDFSNVIGSSSIGTVYKGTLSNGVEIAVVSVAVISAKDWSNNLEAQFRNKIDTLSKLNHKNFVNLLGYCEEEQPFTRMMVFEYAPNGTLFEHLHVKEAEHLDWGMRMRITMGMAYCLEHMHQLTPPITLKNLKSSAVNLTEDYAAKISDIGFSDFGFWNELAAAEMKFYPESNVYSFGVTLFEMITGRLPYSVDKGSIEDCASDYLRGERPLREMVDPTLKSLQVEQLEKIGEVIKSCVHPDPKQRPAMREVTAILRDITAIGPDGAIPKHSPLWWAELEILSTEA 647
HSP 2 Score: 61.2326 bits (147), Expect = 2.844e-7
Identity = 32/83 (38.55%), Postives = 44/83 (53.01%), Query Frame = 0
Query: 1 MIEFWRFNQHGLAIFMLMICLLGQKIQFCLTLNQQGVPLLK-------------------EGVVDPGSWNGAESLNKNVVIWN 64
MIE RF +H LA+ M+M+CLL Q + C +LN +G+ LL+ GV+DP SW G E + NVV+ N
Sbjct: 1 MIELRRFCEHRLAMLMVMMCLLYQNLSLCWSLNDEGLALLRFREKVVSDPFGALSNWNDDVGVIDPCSWFGVECSDGNVVLLN 83
BLAST of XM_017387544.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EU36 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 528.48 bits (1360), Expect = 0.000e+0
Identity = 271/462 (58.66%), Postives = 331/462 (71.65%), Query Frame = 0
Match: A0A4S4EU36 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 528.48 bits (1360), Expect = 0.000e+0
Identity = 271/462 (58.66%), Postives = 331/462 (71.65%), Query Frame = 0
Query: 63 WNRAVAGNVFHRRLLDIDVVDAP---RRYSLRRQIASLFPPKTIKALPSSAQPPSPSPSPSPSPVPSPVPSPSPSAAQIPEVTVPSGPPSRPSSPFPENSPGSDDEQSSRGSGSKHHLAITLSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDMQASPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEG 521
WN A G+ HRRLL ++ P S P ++ S PP+ + P PV + +PSP+ + S P R SGSKH + I LS A+GG+AL L+ G++FC+ NKVS VRPWATG+SGQLQKAFVTGVP LKR+ELE ACEDFSNV+S+S+ GTVYKGTLS GVEIAVTS+AV SAK+W LE QFR K+ LS+VNHKNFVNL+GYC ED+PFTRM+VFEYAPNGTLFEHLHI+E+EHLDW MRMRI MG+AYCL+H+HQL PPI HK+LNSSAV LTEDYAAK+SDFG W E+A+ +M+++ E N+YSFGVLLFE++TG+LPY VDS +LEDWA DYLRG++ EMVD L SF EQLE+IG+VI+SC H NPKQRP M+ VTARL+EIT I + A P+ SPLWWAELEI+S++
Sbjct: 151 WNIAQTGDAVHRRLLQEKPINLPINEPVPSQFPSPPPSPSPSSVSPSYSPTLPPASAVYAFPPPVSAAMPSPAENN---------STPVKR--------------------SGSKHRVLI-LSLAIGGTALSALVI-GLFFCQGNKVSVVRPWATGISGQLQKAFVTGVPKLKRSELETACEDFSNVISSSSIGTVYKGTLSNGVEIAVTSVAVASAKDWSNILEVQFRNKVDTLSKVNHKNFVNLLGYCVEDEPFTRMLVFEYAPNGTLFEHLHIKEAEHLDWVMRMRITMGMAYCLDHMHQLTPPIAHKNLNSSAVHLTEDYAAKVSDFGFWREVAAAEMESNRERNLYSFGVLLFEMITGKLPYSVDSGSLEDWALDYLRGEKSFREMVDPTLKSFQVEQLEKIGDVIRSCVHPNPKQRPQMREVTARLREITEIGPDGAKPKASPLWWAELEILSADA 581
BLAST of XM_017387544.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AVK7 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011} (Fragment))
HSP 1 Score: 528.094 bits (1359), Expect = 0.000e+0
Identity = 247/341 (72.43%), Postives = 293/341 (85.92%), Query Frame = 0
HSP 2 Score: 50.8322 bits (120), Expect = 4.616e-4
Identity = 26/75 (34.67%), Postives = 37/75 (49.33%), Query Frame = 0
Match: A0A5B7AVK7 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011} (Fragment))
HSP 1 Score: 528.094 bits (1359), Expect = 0.000e+0
Identity = 247/341 (72.43%), Postives = 293/341 (85.92%), Query Frame = 0
Query: 181 LSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDMQA--SPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISS 519
LS A+GGS LL +L I+FCR K +AV PW TGLS QLQKAFVTGVP LKR+ELE ACEDFSNV+++S+ GTVYKGTLS+GVEIAVTS+AV AK+W ENLE+QFR KI LS+VNHKNF NL+GYCEE++PFTRM+VFEYAPNGTLFEHLHI+E+EHLDW MRMRI MG+AYCLEH+HQL PPI HK+L SSAV+LTEDYAAK+SDFG W E+A+ +M++ PESNVYSFGV+LFE++TGRLPY VDS +L+DWASDYLRGDQPL EMVD L SF EQL++IGEVIKSC H +PKQRPAM+ VTARL+EIT I + A+P+LSPLWWAELE++S+
Sbjct: 273 LSGAIGGSVLLFILVIFIFFCRVKKAAAVNPWTTGLSEQLQKAFVTGVPKLKRSELETACEDFSNVINSSSIGTVYKGTLSSGVEIAVTSVAVIYAKDWSENLEAQFRNKIDTLSKVNHKNFDNLLGYCEEEEPFTRMMVFEYAPNGTLFEHLHIKEAEHLDWEMRMRIAMGMAYCLEHMHQLTPPIAHKNLTSSAVNLTEDYAAKISDFGFWIEVAAAEMESHPDPESNVYSFGVVLFEMITGRLPYSVDSSSLDDWASDYLRGDQPLEEMVDSTLRSFQVEQLKKIGEVIKSCVHPDPKQRPAMREVTARLREITAIAPDGAIPKLSPLWWAELEVLST 613
HSP 2 Score: 50.8322 bits (120), Expect = 4.616e-4
Identity = 26/75 (34.67%), Postives = 37/75 (49.33%), Query Frame = 0
Query: 9 QHGLAIFMLMICLLGQKIQFCLTLNQQGVPLLK-------------------EGVVDPGSWNGAESLNKNVVIWN 64
+H LA+ M+M CLL Q + C +LN G+ LL+ G++DP SW G E + NVV+ N
Sbjct: 1 EHRLAMLMVMTCLLYQNLNLCWSLNNDGLALLRFKDRVVSDPFGALSNWKDSVGIIDPCSWFGVECSDGNVVVLN 75
BLAST of XM_017387544.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AUI3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 527.709 bits (1358), Expect = 1.506e-180
Identity = 247/341 (72.43%), Postives = 293/341 (85.92%), Query Frame = 0
HSP 2 Score: 62.7734 bits (151), Expect = 9.276e-8
Identity = 31/83 (37.35%), Postives = 42/83 (50.60%), Query Frame = 0
Match: A0A5B7AUI3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 527.709 bits (1358), Expect = 1.506e-180
Identity = 247/341 (72.43%), Postives = 293/341 (85.92%), Query Frame = 0
Query: 181 LSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDMQA--SPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISS 519
LS A+GGS LL +L I+FCR K +AV PW TGLS QLQKAFVTGVP LKR+ELE ACEDFSNV+++S+ GTVYKGTLS+GVEIAVTS+AV AK+W ENLE+QFR KI LS+VNHKNF NL+GYCEE++PFTRM+VFEYAPNGTLFEHLHI+E+EHLDW MRMRI MG+AYCLEH+HQL PPI HK+L SSAV+LTEDYAAK+SDFG W E+A+ +M++ PESNVYSFGV+LFE++TGRLPY VDS +L+DWASDYLRGDQPL EMVD L SF EQL++IGEVIKSC H +PKQRPAM+ VTARL+EIT I + A+P+LSPLWWAELE++S+
Sbjct: 281 LSGAIGGSVLLFILVIFIFFCRVKKAAAVNPWTTGLSEQLQKAFVTGVPKLKRSELETACEDFSNVINSSSIGTVYKGTLSSGVEIAVTSVAVIYAKDWSENLEAQFRNKIDTLSKVNHKNFDNLLGYCEEEEPFTRMMVFEYAPNGTLFEHLHIKEAEHLDWEMRMRIAMGMAYCLEHMHQLTPPIAHKNLTSSAVNLTEDYAAKISDFGFWIEVAAAEMESHPDPESNVYSFGVVLFEMITGRLPYSVDSSSLDDWASDYLRGDQPLEEMVDSTLRSFQVEQLKKIGEVIKSCVHPDPKQRPAMREVTARLREITAIAPDGAIPKLSPLWWAELEVLST 621
HSP 2 Score: 62.7734 bits (151), Expect = 9.276e-8
Identity = 31/83 (37.35%), Postives = 42/83 (50.60%), Query Frame = 0
Query: 1 MIEFWRFNQHGLAIFMLMICLLGQKIQFCLTLNQQGVPLLK-------------------EGVVDPGSWNGAESLNKNVVIWN 64
MIE WR +H LA+ M+M CLL Q + C +LN G+ LL+ G++DP SW G E + NVV+ N
Sbjct: 1 MIELWRVGEHRLAMLMVMTCLLYQNLNLCWSLNNDGLALLRFKDRVVSDPFGALSNWKDSVGIIDPCSWFGVECSDGNVVVLN 83
BLAST of XM_017387544.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4DYS8 ((probable inactive receptor-like protein kinase At3g56050 {ECO:0000313|RefSeq:XP_018812296.2}))
HSP 1 Score: 525.783 bits (1353), Expect = 1.877e-179
Identity = 277/484 (57.23%), Postives = 350/484 (72.31%), Query Frame = 0
Match: A0A2I4DYS8 ((probable inactive receptor-like protein kinase At3g56050 {ECO:0000313|RefSeq:XP_018812296.2}))
HSP 1 Score: 525.783 bits (1353), Expect = 1.877e-179
Identity = 277/484 (57.23%), Postives = 350/484 (72.31%), Query Frame = 0
Query: 51 NGAE--SLNKNVVIWNRAVAGNVFHRRLLDIDVVDAPRRYSLRRQIASLFPPKTIKALPSSAQPPSPSPSPSPSPVPSPVPSPSPSAAQIPEVTVPSGPPSRPSSPFPENSPGSDDEQSSRGSGSKHHLAITLSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDMQAS-----------PESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEG 521
N AE S +K V WN A ++FHRRLL ++VD + + IAS P IK + SSA P S + + SP+ + + + P P+S S +G ++HLA L A+GG+ +L+ A G+Y C+SNKV+ VRPWATGLSGQLQKAFVTGVP LKR++LEAACEDFSNV+ +S GTVYKGTLS+GVEIAV ++ SAK+W +LE+QFR KI LS+VNHKNFV+L+GYC+ED+PFTRM+VFEYAPNGTLFEHLHI+E+EHL+WGMR+RI MG+AYCLEH+HQL PPI H +LNSSAVSLTEDY+AK+S+F WNEI + +++++ PESNVYSFGV+LFE+VTGRLPY VD+ +LEDWASDYLRG QPL E+VD LT+F EEQLE +GEV+KSC H +PKQRPAM+ ++ARL+ IT I E A P+LSPLWWAELEI S++G
Sbjct: 186 NAAEGSSCHKRSVAWNVAQTEDMFHRRLLK-NMVDESQNIEI---IAS---PPPIKVIISSAPPSPSPSLSPSSGPKAKMDSPTQMTSPPSQPSSVPSPAGSPTS-------------SDKG---RNHLAAILVGAIGGT--ILISAIGVYLCKSNKVATVRPWATGLSGQLQKAFVTGVPKLKRSDLEAACEDFSNVIGSSPIGTVYKGTLSSGVEIAVAAVGATSAKDWSNSLEAQFRWKIDTLSKVNHKNFVSLLGYCQEDEPFTRMMVFEYAPNGTLFEHLHIKEAEHLNWGMRLRIAMGMAYCLEHMHQLNPPIAHHNLNSSAVSLTEDYSAKISEFSFWNEIVAAEIESAGLKNLYTPSVDPESNVYSFGVILFEIVTGRLPYSVDNGSLEDWASDYLRGGQPLREIVDPTLTAFHEEQLELMGEVVKSCVHPDPKQRPAMREISARLRAITGITPEGANPKLSPLWWAELEITSADG 644
| Match Name | Stats | Description |
|---|---|---|
| A0A1R3FW73 | E-Value: 0.000e+0, PID: 56.72 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A7J7I3V6 | E-Value: 1.863e-3, PID: 59.09 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A1R3I025 | E-Value: 0.000e+0, PID: 71.59 | Protein kinase domain-containing protein {ECO:0000... [more] |
| V4T720 | E-Value: 0.000e+0, PID: 55.68 | Protein kinase domain-containing protein {ECO:0000... [more] |
| V4SML4 | E-Value: 0.000e+0, PID: 55.68 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5B7ATU8 | E-Value: 2.844e-7, PID: 69.36 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A4S4EU36 | E-Value: 0.000e+0, PID: 58.66 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5B7AVK7 | E-Value: 4.616e-4, PID: 72.43 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5B7AUI3 | E-Value: 1.506e-180, PID: 72.43 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A2I4DYS8 | E-Value: 1.877e-179, PID: 57.23 | (probable inactive receptor-like protein kinase At... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |