Resource Type:
Polypeptide
Name:
XM_017387545.1
Identifier:
XM_017387545.1-protein
Sequence:
MIEFWRFNQHGLAIFMLMICLLGQKIQFCLTLNQQGVPLLKEGVVDPGSW
NGAESLNKNVVISAVAGNVFHRRLLDIDVVDAPRRYSLRRQIASLFPPKT
IKALPSSAQPPSPSPSPSPSPVPSPVPSPSPSAAQIPEVTVPSGPPSRPS
SPFPENSPGSDDEQSSRGSGSKHHLAITLSAALGGSALLLLLASGIYFCR
SNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSAT
GTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNF
VNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMG
IAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDMQ
ASPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVD
QILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEA
VPRLSPLWWAELEIISSEGL
Sequence Length:
520
Sequence Checksum:
7e6b8685fd470ed116d03f41a408bdaf
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017387545.1, derives from mRNA, XM_017387545.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017387545.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017387545.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3FW73 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 535.798 bits (1379), Expect = 0.000e+0
Identity = 264/415 (63.61%), Postives = 314/415 (75.66%), Query Frame = 0
Match: A0A1R3FW73 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 535.798 bits (1379), Expect = 0.000e+0
Identity = 264/415 (63.61%), Postives = 314/415 (75.66%), Query Frame = 0
Query: 116 SPSPSPVPSPVPSPSPSAAQIPEVTVPSGPPSRPSSPFPENSPGSDDEQSSRGSGSKHHLAITLSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDMQA-----------SPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEG 519
SP+ P +P P+PS + +P +VP+ S S H I L A++GG+ LL++ G Y +++KVS V+PWATGLSGQLQKAFVTGVP LKR+EL AACEDFSNV+ +S GTVYKGTLS GVEIAV S+AV+S K+W +NLE+QFRKKI LS+VNHKNFVNL+GYCEED+PFTRM+VFEYAPNGTLFEHLHI+ESEHLDW MR+RIIMG+AYCLEH+HQL PPIPH +LNSSAV+LTEDYAAK+SD WNEI + D +A S ESNVYSFGVLLFE+VTGR+PY+VD +LEDWASDYLR DQPL EMVD L SFD EQLE++GEVIKSCCH P+QRP MK V ARL+EIT I + A+P+LSPLWWAELEI+S+E
Sbjct: 123 SPNADPSHAPAPTPSNNNTVLPNASVPTT------------------SGSKSSGSSSKHRTILL-ASIGGAVFLLVVIVGTYLFKTSKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELVAACEDFSNVIGSSTIGTVYKGTLSNGVEIAVASVAVKSDKDWSKNLETQFRKKIDTLSKVNHKNFVNLLGYCEEDEPFTRMMVFEYAPNGTLFEHLHIKESEHLDWAMRLRIIMGMAYCLEHIHQLNPPIPHNNLNSSAVNLTEDYAAKISDPCFWNEITASDREADRKNIPDSPLESLESNVYSFGVLLFEIVTGRMPYLVDDGSLEDWASDYLRRDQPLTEMVDPTLNSFDREQLEKLGEVIKSCCHPEPRQRPDMKEVGARLREITAITPDGAIPKLSPLWWAELEIMSAEA 518
BLAST of XM_017387545.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3I025 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0
Identity = 252/352 (71.59%), Postives = 294/352 (83.52%), Query Frame = 0
Match: A0A1R3I025 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0
Identity = 252/352 (71.59%), Postives = 294/352 (83.52%), Query Frame = 0
Query: 179 LSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDMQA-----------SPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEG 519
L AA+GG+ LL++ G Y +++KVS V+PWATGLSGQLQKAFVTGVP LKR+EL AACEDFSNV+ +S GTVYKGTLS GVEIAV S+AV+SAK+W +NLE+QFRKKI LS+VNHKNFVNL+GYCEED+PFTRM+VFEYAPNGTLFEHLHI+ESEHLDW MR+RIIMG+AYCLEH+HQL PPIPH +LNSSAV+LTEDYAAK+SD WNEI + D +A S ESNVYSFGVLLFE+VTGR+PY+VD +LEDWASDYLR DQPL EMVD L SFD EQLE++GEVIKSCCH P+QRP MK V ARL+EIT I + A+P+LSPLWWAELEI+S+E
Sbjct: 291 LFAAIGGAVFLLVVIVGTYLFKTSKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELVAACEDFSNVIGSSTIGTVYKGTLSNGVEIAVASVAVKSAKDWSKNLETQFRKKIDTLSKVNHKNFVNLLGYCEEDEPFTRMMVFEYAPNGTLFEHLHIKESEHLDWAMRLRIIMGMAYCLEHIHQLNPPIPHNNLNSSAVNLTEDYAAKISDPCFWNEITASDREADRKNIPDSPLESLESNVYSFGVLLFEIVTGRMPYLVDDGSLEDWASDYLRRDQPLAEMVDPTLNSFDREQLEKLGEVIKSCCHPEPRQRPDMKEVGARLREITAITPDGAIPKLSPLWWAELEIMSAEA 642
BLAST of XM_017387545.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ATU8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 530.406 bits (1365), Expect = 0.000e+0
Identity = 249/359 (69.36%), Postives = 301/359 (83.84%), Query Frame = 0
HSP 2 Score: 59.6918 bits (143), Expect = 9.605e-7
Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 0
Match: A0A5B7ATU8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 530.406 bits (1365), Expect = 0.000e+0
Identity = 249/359 (69.36%), Postives = 301/359 (83.84%), Query Frame = 0
Query: 166 SRGSGSKHHLAITLSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKL-----SDFGLWNEIASKDMQASPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEG 519
++ S S H+ + LSA +GGSALL++L GI+FC+ NKV+AV+PWATGLSGQLQKAFVTGVP LKR+ELE ACEDFSNV+ +S+ GTVYKGTLS GVEIAV S+AV SAK+W NLE+QFR KI LS++NHKNFVNL+GYCEE++PFTRM+VFEYAPNGTLFEHLH++E+EHLDWGMRMRI MG+AYCLEH+HQL PPI K+L SSAV+LTEDYAAK+ SDFG WNE+A+ +M+ PESNVYSFGV LFE++TGRLPY VD ++ED ASDYLRG++PL EMVD L S EQLE+IGEVIKSC H +PKQRPAM+ VTA L++IT I + A+P+ SPLWWAELEI+S+E
Sbjct: 289 AKKSDSNHYRVLILSAVIGGSALLIILVIGIFFCQGNKVAAVKPWATGLSGQLQKAFVTGVPKLKRSELETACEDFSNVIGSSSIGTVYKGTLSNGVEIAVVSVAVISAKDWSNNLEAQFRNKIDTLSKLNHKNFVNLLGYCEEEQPFTRMMVFEYAPNGTLFEHLHVKEAEHLDWGMRMRITMGMAYCLEHMHQLTPPITLKNLKSSAVNLTEDYAAKISDIGFSDFGFWNELAAAEMKFYPESNVYSFGVTLFEMITGRLPYSVDKGSIEDCASDYLRGERPLREMVDPTLKSLQVEQLEKIGEVIKSCVHPDPKQRPAMREVTAILRDITAIGPDGAIPKHSPLWWAELEILSTEA 647
HSP 2 Score: 59.6918 bits (143), Expect = 9.605e-7
Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 0
Query: 1 MIEFWRFNQHGLAIFMLMICLLGQKIQFCLTLNQQGVPLLK-------------------EGVVDPGSWNGAESLNKNVVI 62
MIE RF +H LA+ M+M+CLL Q + C +LN +G+ LL+ GV+DP SW G E + NVV+
Sbjct: 1 MIELRRFCEHRLAMLMVMMCLLYQNLSLCWSLNDEGLALLRFREKVVSDPFGALSNWNDDVGVIDPCSWFGVECSDGNVVL 81
BLAST of XM_017387545.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4T720 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 528.865 bits (1361), Expect = 0.000e+0
Identity = 268/425 (63.06%), Postives = 326/425 (76.71%), Query Frame = 0
Match: V4T720 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 528.865 bits (1361), Expect = 0.000e+0
Identity = 268/425 (63.06%), Postives = 326/425 (76.71%), Query Frame = 0
Query: 107 SAQPPSPSPSPSPSPVPSPVPSPSPSAAQIPEVTVPSGPPSRPSSPFPENSPGSDDEQSSRGSGSKHHLAITLSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDM-----------QASPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEGL 520
S PP S +P+P+P P+ P+P+PS +++P RPSS S Q S GS SKH I + + G A+L++ GIY CRSNKVS V+PWATGLSGQLQKAFVTGVP LKR+ELEAACEDFSNV+ +S GTVYKGTLS GVEIAV S++V SAK+WP+NLE QFRKKI LS+VNHKNFVNLIG+CEE++PFTRM+VFEYAPNGTLFEH+HI+ESEHLDWGMR+RI MG+AYCLEH+HQL PPI H LNSSAV LTEDYAAKLSD WNEIA +M AS ESNVY+FGVLLFE+VTGRLPY+VD+ +LEDWA+DYL G QPL + VD L+SFDEEQLE++GE+IKSC +P++RP M+++ A L+EIT I + A+P+LSPLWWAE+EI+S+E +
Sbjct: 191 SVSPPKLS-NPAPAPAPNQTPTPTPS------LSIP-----RPSS--------SQSLQKSGGSSSKH---IAILGGVIGGAILVVAIVGIYLCRSNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEAI 592
BLAST of XM_017387545.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EU36 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 528.48 bits (1360), Expect = 0.000e+0
Identity = 252/375 (67.20%), Postives = 305/375 (81.33%), Query Frame = 0
Match: A0A4S4EU36 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 528.48 bits (1360), Expect = 0.000e+0
Identity = 252/375 (67.20%), Postives = 305/375 (81.33%), Query Frame = 0
Query: 145 PPSRPSSPFPENSPGSDDEQSSRGSGSKHHLAITLSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDMQASPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEG 519
PP + P SP ++ + SGSKH + I LS A+GG+AL L+ G++FC+ NKVS VRPWATG+SGQLQKAFVTGVP LKR+ELE ACEDFSNV+S+S+ GTVYKGTLS GVEIAVTS+AV SAK+W LE QFR K+ LS+VNHKNFVNL+GYC ED+PFTRM+VFEYAPNGTLFEHLHI+E+EHLDW MRMRI MG+AYCL+H+HQL PPI HK+LNSSAV LTEDYAAK+SDFG W E+A+ +M+++ E N+YSFGVLLFE++TG+LPY VDS +LEDWA DYLRG++ EMVD L SF EQLE+IG+VI+SC H NPKQRP M+ VTARL+EIT I + A P+ SPLWWAELEI+S++
Sbjct: 213 PPVSAAMP----SPAENNSTPVKRSGSKHRVLI-LSLAIGGTALSALVI-GLFFCQGNKVSVVRPWATGISGQLQKAFVTGVPKLKRSELETACEDFSNVISSSSIGTVYKGTLSNGVEIAVTSVAVASAKDWSNILEVQFRNKVDTLSKVNHKNFVNLLGYCVEDEPFTRMLVFEYAPNGTLFEHLHIKEAEHLDWVMRMRITMGMAYCLDHMHQLTPPIAHKNLNSSAVHLTEDYAAKVSDFGFWREVAAAEMESNRERNLYSFGVLLFEMITGKLPYSVDSGSLEDWALDYLRGEKSFREMVDPTLKSFQVEQLEKIGDVIRSCVHPNPKQRPQMREVTARLREITEIGPDGAKPKASPLWWAELEILSADA 581
BLAST of XM_017387545.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AVK7 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011} (Fragment))
HSP 1 Score: 528.48 bits (1360), Expect = 0.000e+0
Identity = 247/341 (72.43%), Postives = 293/341 (85.92%), Query Frame = 0
HSP 2 Score: 49.6766 bits (117), Expect = 1.220e-3
Identity = 25/73 (34.25%), Postives = 36/73 (49.32%), Query Frame = 0
Match: A0A5B7AVK7 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011} (Fragment))
HSP 1 Score: 528.48 bits (1360), Expect = 0.000e+0
Identity = 247/341 (72.43%), Postives = 293/341 (85.92%), Query Frame = 0
Query: 179 LSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDMQA--SPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISS 517
LS A+GGS LL +L I+FCR K +AV PW TGLS QLQKAFVTGVP LKR+ELE ACEDFSNV+++S+ GTVYKGTLS+GVEIAVTS+AV AK+W ENLE+QFR KI LS+VNHKNF NL+GYCEE++PFTRM+VFEYAPNGTLFEHLHI+E+EHLDW MRMRI MG+AYCLEH+HQL PPI HK+L SSAV+LTEDYAAK+SDFG W E+A+ +M++ PESNVYSFGV+LFE++TGRLPY VDS +L+DWASDYLRGDQPL EMVD L SF EQL++IGEVIKSC H +PKQRPAM+ VTARL+EIT I + A+P+LSPLWWAELE++S+
Sbjct: 273 LSGAIGGSVLLFILVIFIFFCRVKKAAAVNPWTTGLSEQLQKAFVTGVPKLKRSELETACEDFSNVINSSSIGTVYKGTLSSGVEIAVTSVAVIYAKDWSENLEAQFRNKIDTLSKVNHKNFDNLLGYCEEEEPFTRMMVFEYAPNGTLFEHLHIKEAEHLDWEMRMRIAMGMAYCLEHMHQLTPPIAHKNLTSSAVNLTEDYAAKISDFGFWIEVAAAEMESHPDPESNVYSFGVVLFEMITGRLPYSVDSSSLDDWASDYLRGDQPLEEMVDSTLRSFQVEQLKKIGEVIKSCVHPDPKQRPAMREVTARLREITAIAPDGAIPKLSPLWWAELEVLST 613
HSP 2 Score: 49.6766 bits (117), Expect = 1.220e-3
Identity = 25/73 (34.25%), Postives = 36/73 (49.32%), Query Frame = 0
Query: 9 QHGLAIFMLMICLLGQKIQFCLTLNQQGVPLLK-------------------EGVVDPGSWNGAESLNKNVVI 62
+H LA+ M+M CLL Q + C +LN G+ LL+ G++DP SW G E + NVV+
Sbjct: 1 EHRLAMLMVMTCLLYQNLNLCWSLNNDGLALLRFKDRVVSDPFGALSNWKDSVGIIDPCSWFGVECSDGNVVV 73
BLAST of XM_017387545.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AUI3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 528.094 bits (1359), Expect = 0.000e+0
Identity = 247/341 (72.43%), Postives = 293/341 (85.92%), Query Frame = 0
HSP 2 Score: 61.6178 bits (148), Expect = 2.236e-7
Identity = 30/81 (37.04%), Postives = 41/81 (50.62%), Query Frame = 0
Match: A0A5B7AUI3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 528.094 bits (1359), Expect = 0.000e+0
Identity = 247/341 (72.43%), Postives = 293/341 (85.92%), Query Frame = 0
Query: 179 LSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDMQA--SPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISS 517
LS A+GGS LL +L I+FCR K +AV PW TGLS QLQKAFVTGVP LKR+ELE ACEDFSNV+++S+ GTVYKGTLS+GVEIAVTS+AV AK+W ENLE+QFR KI LS+VNHKNF NL+GYCEE++PFTRM+VFEYAPNGTLFEHLHI+E+EHLDW MRMRI MG+AYCLEH+HQL PPI HK+L SSAV+LTEDYAAK+SDFG W E+A+ +M++ PESNVYSFGV+LFE++TGRLPY VDS +L+DWASDYLRGDQPL EMVD L SF EQL++IGEVIKSC H +PKQRPAM+ VTARL+EIT I + A+P+LSPLWWAELE++S+
Sbjct: 281 LSGAIGGSVLLFILVIFIFFCRVKKAAAVNPWTTGLSEQLQKAFVTGVPKLKRSELETACEDFSNVINSSSIGTVYKGTLSSGVEIAVTSVAVIYAKDWSENLEAQFRNKIDTLSKVNHKNFDNLLGYCEEEEPFTRMMVFEYAPNGTLFEHLHIKEAEHLDWEMRMRIAMGMAYCLEHMHQLTPPIAHKNLTSSAVNLTEDYAAKISDFGFWIEVAAAEMESHPDPESNVYSFGVVLFEMITGRLPYSVDSSSLDDWASDYLRGDQPLEEMVDSTLRSFQVEQLKKIGEVIKSCVHPDPKQRPAMREVTARLREITAIAPDGAIPKLSPLWWAELEVLST 621
HSP 2 Score: 61.6178 bits (148), Expect = 2.236e-7
Identity = 30/81 (37.04%), Postives = 41/81 (50.62%), Query Frame = 0
Query: 1 MIEFWRFNQHGLAIFMLMICLLGQKIQFCLTLNQQGVPLLK-------------------EGVVDPGSWNGAESLNKNVVI 62
MIE WR +H LA+ M+M CLL Q + C +LN G+ LL+ G++DP SW G E + NVV+
Sbjct: 1 MIELWRVGEHRLAMLMVMTCLLYQNLNLCWSLNNDGLALLRFKDRVVSDPFGALSNWKDSVGIIDPCSWFGVECSDGNVVV 81
BLAST of XM_017387545.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7I3V6 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 528.865 bits (1361), Expect = 3.986e-180
Identity = 256/391 (65.47%), Postives = 312/391 (79.80%), Query Frame = 0
HSP 2 Score: 49.2914 bits (116), Expect = 1.519e-3
Identity = 31/79 (39.24%), Postives = 41/79 (51.90%), Query Frame = 0
Match: A0A7J7I3V6 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 528.865 bits (1361), Expect = 3.986e-180
Identity = 256/391 (65.47%), Postives = 312/391 (79.80%), Query Frame = 0
Query: 129 PSPSAAQIPEVTVPSGPPSRPSSPFPENSPGSDDEQSSRGSGSKHHLAITLSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDMQASPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEG 519
P+P+ P PP + P SP ++ + SGSKH + I LS A+GG+AL L+ G++FC+ NKVS VRPWATG+SGQLQKAFVTGVP LKR+ELE ACEDFSNV+S+S+ GTVYKGTLS GVEIAVTS+AV SAK+W LE QFR KI LS+VNHKNFVNL+GYC ED+PFTRM+VFEYAPNGTLFEHLHI+E+EHLDW RMRI MG+AYCL+H+HQL PPI HK+LNSSAV LTEDYAAK+SDFG W+E+A+ +M+++ ESN+YSFGVLLFE++TG+LPY VDS +LEDWASDYLRG++ EMVD L SF EQLE+IG+VI+SC H NPKQRP ++ VTARL+EIT I + A P+ SPLWWAELEI+S++
Sbjct: 313 PAPAVYAFP-------PPVSAAMP----SPAENNSSPVKRSGSKHQVLI-LSLAIGGTALSALVI-GLFFCQGNKVSVVRPWATGISGQLQKAFVTGVPKLKRSELETACEDFSNVISSSSIGTVYKGTLSNGVEIAVTSVAVASAKDWSNILEVQFRNKIDTLSKVNHKNFVNLLGYCVEDEPFTRMLVFEYAPNGTLFEHLHIKEAEHLDWVTRMRITMGMAYCLDHMHQLTPPIAHKNLNSSAVHLTEDYAAKVSDFGFWSEVAAAEMESNRESNLYSFGVLLFEMITGKLPYSVDSGSLEDWASDYLRGEKSFREMVDPTLKSFQVEQLEKIGDVIRSCVHPNPKQRPQIREVTARLREITEIGPDGAKPKASPLWWAELEILSADA 690
HSP 2 Score: 49.2914 bits (116), Expect = 1.519e-3
Identity = 31/79 (39.24%), Postives = 41/79 (51.90%), Query Frame = 0
Query: 1 MIEFWRFNQHGLAIFMLMICLLGQKIQFCLTLNQQGVPLL--KEGVV-DP----GSWN---GAESLNKNVVISAVAGNV 69
MIE W F H L I M+M CLL + C +LN QG+ LL +E VV DP +WN G +N N+ + G +
Sbjct: 74 MIELWGFRDHRLPILMVMACLLYPNLNLCCSLNDQGLALLRFRERVVSDPFGALSNWNDDVGVGVINPNLKDLCLGGTL 152
BLAST of XM_017387545.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4SML4 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 527.324 bits (1357), Expect = 7.855e-180
Identity = 268/425 (63.06%), Postives = 326/425 (76.71%), Query Frame = 0
Match: V4SML4 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 527.324 bits (1357), Expect = 7.855e-180
Identity = 268/425 (63.06%), Postives = 326/425 (76.71%), Query Frame = 0
Query: 107 SAQPPSPSPSPSPSPVPSPVPSPSPSAAQIPEVTVPSGPPSRPSSPFPENSPGSDDEQSSRGSGSKHHLAITLSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDM-----------QASPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEGL 520
S PP S +P+P+P P+ P+P+PS +++P RPSS S Q S GS SKH I + + G A+L++ GIY CRSNKVS V+PWATGLSGQLQKAFVTGVP LKR+ELEAACEDFSNV+ +S GTVYKGTLS GVEIAV S++V SAK+WP+NLE QFRKKI LS+VNHKNFVNLIG+CEE++PFTRM+VFEYAPNGTLFEH+HI+ESEHLDWGMR+RI MG+AYCLEH+HQL PPI H LNSSAV LTEDYAAKLSD WNEIA +M AS ESNVY+FGVLLFE+VTGRLPY+VD+ +LEDWA+DYL G QPL + VD L+SFDEEQLE++GE+IKSC +P++RP M+++ A L+EIT I + A+P+LSPLWWAE+EI+S+E +
Sbjct: 263 SVSPPKLS-NPAPAPAPNQTPTPTPS------LSIP-----RPSS--------SQSLQKSGGSSSKH---IAILGGVIGGAILVVAIVGIYLCRSNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEAI 664
BLAST of XM_017387545.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4L9G1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011} (Fragment))
HSP 1 Score: 519.235 bits (1336), Expect = 5.680e-179
Identity = 253/369 (68.56%), Postives = 301/369 (81.57%), Query Frame = 0
Match: A0A6A4L9G1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011} (Fragment))
HSP 1 Score: 519.235 bits (1336), Expect = 5.680e-179
Identity = 253/369 (68.56%), Postives = 301/369 (81.57%), Query Frame = 0
Query: 151 SPFPENSPGSDDEQSSRGSGSKHHLAITLSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDMQASPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEG 519
SP P +S + S S S H A+ + AA+ G LL L GI+FCR NK+ AVRPWATGLSGQLQKAFVTGVP LKR ELEAACEDFSNV+ +S GTVYKGTLS+GVEIAVTS+AV SAKEW NLE+QFR KI LS+VNHKNF+NL+GYCEED+PFTRM+VFEYAPNGTLFEHLHI+E+EHL+WGMRMRI MGIAYCL+H+HQLK PI K+L+SS+V+LTEDYA+K+SDF L +++A+ +M + PESNVYSFGV+LFE+VTGRL S ++EDWASDYLRGD+ L +MVD L SF EEQ+EQI EVIKSC + NPK+R MK+VTARL+EIT I + AVP+LSPLWWAELEI+S EG
Sbjct: 141 SPTP-SSTAENPSISDESSNSNSHRALIICAAIVGPMLLFSLVIGIFFCRGNKIVAVRPWATGLSGQLQKAFVTGVPKLKRAELEAACEDFSNVIGSSPIGTVYKGTLSSGVEIAVTSIAVTSAKEWSTNLEAQFRDKINSLSKVNHKNFMNLLGYCEEDEPFTRMLVFEYAPNGTLFEHLHIKEAEHLEWGMRMRIXMGIAYCLDHMHQLKRPITLKNLHSSSVNLTEDYASKVSDFVLLDKVAAAEMDSHPESNVYSFGVVLFEIVTGRL----HSGSIEDWASDYLRGDRSLRDMVDPTLKSFQEEQIEQIDEVIKSCVNPNPKRRQQMKDVTARLREITSIGPDGAVPKLSPLWWAELEIMSVEG 504
| Match Name | Stats | Description |
|---|---|---|
| A0A1R3FW73 | E-Value: 0.000e+0, PID: 63.61 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A1R3I025 | E-Value: 0.000e+0, PID: 71.59 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5B7ATU8 | E-Value: 9.605e-7, PID: 69.36 | Protein kinase domain-containing protein {ECO:0000... [more] |
| V4T720 | E-Value: 0.000e+0, PID: 63.06 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A4S4EU36 | E-Value: 0.000e+0, PID: 67.20 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5B7AVK7 | E-Value: 1.220e-3, PID: 72.43 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5B7AUI3 | E-Value: 2.236e-7, PID: 72.43 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A7J7I3V6 | E-Value: 3.986e-180, PID: 65.47 | Protein kinase domain-containing protein {ECO:0000... [more] |
| V4SML4 | E-Value: 7.855e-180, PID: 63.06 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A6A4L9G1 | E-Value: 5.680e-179, PID: 68.56 | Protein kinase domain-containing protein {ECO:0000... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |