MAALSLNSLVCFTSSLPNYHHTSRIDVGASVQNAAHLVSHPRIVGLRTKL
KKLEPFVLFASGDNIAVDTSDKGSGNAEVSLSDNQPSAENLPSSGTSEDS
QSLASSNLQVQSQTSKDSNGAVVTSEQKEENSPANLKSTPIRSSRLTARE
KLRAARILSRKPEPKKPPKLQLGSQVLEVLRESDKGKRRPGLPEAPTNML
DDSKRGMPKKGLTFELPGGNEVFFIILSVVLISTVMFSTTYIVWKVGAIH
FNEN
| Relationships |
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| The polypeptide, XM_017382482.1, derives from mRNA, XM_017382482.1. |
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
Match: A0A5J5AUA4 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8534050.1}))
HSP 1 Score: 253.062 bits (645), Expect = 3.384e-82
Identity = 143/254 (56.30%), Postives = 177/254 (69.69%), Query Frame = 0
Query: 3 ALSLNSLVCFTSSLPNYHHTSRIDVGASVQNAAHLVSHPRIVGLR--TKLKKLEPFVLFASGDNIAVDTSDKGSGNAEVSLSDNQPSAENLP-SSGTSEDSQSLASSNLQVQSQTSKDSNGAVVTSEQKEENSPANLKSTPIRSSRLTAREKLRAARILSRKPEPKKPPKLQLGSQVLEVLRESDKGKRRPGLPEAPTNMLDDSKRGMPKKGLTFELPGGNEVFFIILSVVLISTVMFSTTYIVWKVGAIHFNE 253
A+SLNS+V F + YH+ SR + S+ H +VGLR K KK +L A GD+IA DTSD+ SGNAE + SD SA NLP S + DSQ +S+ ++ SQ + SNG++ +S+ K+ S A++KSTP RS LTAREKLRAAR+LSR E K K +LGS+VLE LRESD+GK+R LPEAPTN+LDDSKRGMPK GLTFE PGG ++F II S V ISTVMF+TT+IVWKVGAIHFNE
Sbjct: 2 AVSLNSVVGFNAK-AGYHNVSRSGIRTSLLKVNHFTYPLGMVGLRKFMKGKKGGLCLLVADGDHIATDTSDESSGNAERAYSDATSSAVNLPLSDSQTRDSQFQSSTEMESGSQNPEVSNGSITSSDLKQNTSTADIKSTPKRSP-LTAREKLRAARVLSRYSESK-ASKSELGSKVLEALRESDRGKKRSRLPEAPTNLLDDSKRGMPKAGLTFEFPGGVDMFVIIFSFVFISTVMFATTFIVWKVGAIHFNE 252
Match: A0A5B6YUY6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA35475.1}))
HSP 1 Score: 251.906 bits (642), Expect = 8.187e-82
Identity = 145/255 (56.86%), Postives = 175/255 (68.63%), Query Frame = 0
Query: 3 ALSLNSLVCFTSSL-PNYHHTSRIDVGASVQNAAHLVSHPRIVGLR--TKLKKLEPFVLFASGDNIAVDTSDKGSGNAEVSLSDNQPSAENLPS-SGTSEDSQSLASSNLQVQSQTSKDSNGAVVTSEQKEENSPANLKSTPIRSSRLTAREKLRAARILSRKPEPKKPPKLQLGSQVLEVLRESDKGKRRPGLPEAPTNMLDDSKRGMPKKGLTFELPGGNEVFFIILSVVLISTVMFSTTYIVWKVGAIHFNE 253
A+SLNS+V F S+L YH+ SR + S +VGLR K KK +L A GD +A DTSD GSGNAE + SD PSA NLPS + +SQ S+ ++Q QT K SNG++V+S+ K++ K +P RS RLTAREKLRAAR+LSR E K K +LGS+V E +RESD+GK+R GLPEAPTN+ DDSKRGMPKKGLTFELPGG +VF I S V ISTVMF+TTYIVWKVGAIHFNE
Sbjct: 2 AVSLNSVVGFNSTLQAEYHNVSRSGIRTSALKVNRFTYPLGMVGLRRIIKDKKWGLCLLVADGDRVATDTSDTGSGNAERAFSDG-PSAVNLPSLDSQTRNSQFQTSAEAELQPQTPKVSNGSIVSSDLKQD-----AKFSPKRS-RLTAREKLRAARVLSRNTE-SKASKSELGSKVWEAMRESDRGKKRSGLPEAPTNLFDDSKRGMPKKGLTFELPGGVDVFIIAFSFVFISTVMFATTYIVWKVGAIHFNE 248
Match: A0A6A4L1B7 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9451525.1}) (Fragment))
HSP 1 Score: 236.498 bits (602), Expect = 9.027e-76
Identity = 138/254 (54.33%), Postives = 166/254 (65.35%), Query Frame = 0
Query: 3 ALSLNSLVCFTSSLPNYHHTSRIDVGASVQNAAHLVSHPRIVGLR--TKLKKLEPFVLFASGDNIAVDTSDKGSGNAEVSLSDNQPSAENLPSSGTSEDSQSLASSNLQVQSQT-SKDSNGAVVTSEQKEENSPANLKSTPIRSSRLTAREKLRAARILSRKPEPKKPPKLQLGSQVLEVLRESDKGKRRPGLPEAPTNMLDDSKRGMPKKGLTFELPGGNEVFFIILSVVLISTVMFSTTYIVWKVGAIHFNE 253
A+S NS+V S Y H + AS+ NA H +VGLR KK +L A+GD IA+D DKG NAE S SD + S+ + P + +S Q ++T S+DSNG+VV+S QK+E + N KS RSS LTAREKLRAAR+LSR E K K GS+VLE LRESDKGK++ LPEAPTNMLDDSKRGMPK G TFE PGG +VFFI +S VLIST+MF+TTY VWKVGAIHFNE
Sbjct: 2 AVSFNSVVVLNPST-KYFHVPKSGTRASILNANHFAYPLGMVGLRRHKXSKKRGLCLLVANGDRIAIDAIDKGPANAETSDSDVRSSSLDSP----------VGNSQFQTSAETVSEDSNGSVVSSNQKQEATSVNTKSGVKRSS-LTAREKLRAARVLSRYTESKASNKAPFGSKVLEALRESDKGKKKSRLPEAPTNMLDDSKRGMPKPGWTFEFPGGIDVFFIAVSFVLISTLMFATTYFVWKVGAIHFNE 243
Match: A0A7J7H322 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5947373.1}))
HSP 1 Score: 231.876 bits (590), Expect = 6.660e-74
Identity = 131/243 (53.91%), Postives = 164/243 (67.49%), Query Frame = 0
Query: 15 SLPNYHHTSRIDVGASVQNAAHLVSHPRIVGLRT-KLKKLEPFVLFASGDNIAVDTSDKGSGNAEVSLSDNQPSAENLPSSGTS-EDSQSLASSNLQVQSQTSKDSNGAVVTSEQKEENSPANLKSTPIRSSRLTAREKLRAARILSRKPEPK--KPPKLQLGSQVLEVLRESDKGKRRPGLPEAPTNMLDDSKRGMPKKGLTFELPGGNEVFFIILSVVLISTVMFSTTYIVWKVGAIHFNE 253
S+ NY H R +GAS+ A+H S IV LRT K KK +L A+GD++A D SDKGS NAE S SD++ SA LPS + +SQ S+ + Q S+D NG+V++ + + LK +P LTAREKLRAAR+LSR E K K K +LGS VLE LRESD+GK++ LPEAPTN+ DDSKRGMPK GLTFE PGG + F I++S V IS++MF+TTYIVWKVGAIHFNE
Sbjct: 10 SMANYLHAPRSGIGASLLKASHFTSPSGIVSLRTAKGKKWGVLLLVANGDDVATDISDKGSENAERSDSDDRSSAVTLPSLDSPIRNSQFQTSTETESGPQISEDVNGSVISKNASSVSLKSGLKRSP-----LTAREKLRAARVLSRYTESKASKASKSELGSNVLEALRESDRGKKKSRLPEAPTNLFDDSKRGMPKPGLTFEFPGGFDAFIILVSFVTISSLMFATTYIVWKVGAIHFNE 247
Match: A0A834LBZ7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7132478.1}))
HSP 1 Score: 226.868 bits (577), Expect = 8.998e-72
Identity = 130/238 (54.62%), Postives = 157/238 (65.97%), Query Frame = 0
Query: 19 YHHTSRIDVGASVQNAAHLVSHPRIVGLR--TKLKKLEPFVLFASGDNIAVDTSDKGSGNAEVSLSDNQPSAENLPSSGTSEDSQSLASSNLQVQSQT-SKDSNGAVVTSEQKEENSPANLKSTPIRSSRLTAREKLRAARILSRKPEPKKPPKLQLGSQVLEVLRESDKGKRRPGLPEAPTNMLDDSKRGMPKKGLTFELPGGNEVFFIILSVVLISTVMFSTTYIVWKVGAIHFNE 253
Y H + AS+ N H IVGLR KK +L A GD IA+D KG N+E S SD + S+ + P + +S Q +++T S+DSNG+VV+S QK+E + N KS RSS LTAREKLRAAR+LSR E K K LGS+VLE LRESDKGK++ LPEAPTNMLDDSKRGMPK G TFE PGG +VFFI +S VLIST+MF+TTY VWKVGAIHFN+
Sbjct: 38 YFHVPKSGTRASILNVNHFAYPSGIVGLRRHKNSKKRGLCLLVADGDRIAIDAIVKGPANSETSDSDVRSSSLDSP----------VGNSQFQTRAETASEDSNGSVVSSNQKQEATSVNTKSGVKRSS-LTAREKLRAARVLSRYTESKASNKAPLGSKVLEALRESDKGKKKSRLPEAPTNMLDDSKRGMPKPGWTFEFPGGIDVFFIAVSFVLISTLMFATTYFVWKVGAIHFNQ 264
Match: A0A2R6RR86 ((Integrator complex subunit 11 like {ECO:0000313|EMBL:PSS32527.1}))
HSP 1 Score: 224.942 bits (572), Expect = 4.023e-71
Identity = 135/255 (52.94%), Postives = 164/255 (64.31%), Query Frame = 0
Query: 3 ALSLNSLVCFTSSLPN-YHHTSRIDVGASVQNAAHLVSHPRIVGLRTKLK--KLEPFVLFASGDNIAVDTSDKGSGNAEVSLSDNQPSAENLPSSGTSEDSQSLASSNLQVQS-QTSKDSNGAVVTSEQKEENSPANLKSTPIRSSRLTAREKLRAARILSRKPEPKKPPKLQLGSQVLEVLRESDKGKRRPGLPEAPTNMLDDSKRGMPKKGLTFELPGGNEVFFIILSVVLISTVMFSTTYIVWKVGAIHFNE 253
A+SLNS+ S L Y H R +G S+ A+ L S IV LR K K +L A GD +A+D S+ GSGNAE++ S +Q S+ LPSS T + L +S V Q D NG+VV+S NLKS ++ S LTAREKLRAAR+LSR E K K LGS+VLE LRESD+GK++ GLPEAPTN+ DDSKRGMPK G TFE PGG +VF I S V IST+MF+TTY+VWKVGAIHFNE
Sbjct: 2 AVSLNSVSVVHSPLQGKYLHVPRSCIGVSLHRASELASPLGIVRLRRSAKDNKRGTCLLVADGDRVAIDASETGSGNAEIADSGDQSSSPTLPSSETPIINSQLQTSAETVPGPQNPVDVNGSVVSS---------NLKSG-LKRSPLTAREKLRAARVLSRYTESKASTKPDLGSKVLEALRESDRGKKKSGLPEAPTNLFDDSKRGMPKAGWTFEFPGGVDVFIIAFSFVFISTLMFATTYLVWKVGAIHFNE 246
Match: A0A2R6RWS9 ((Mucin-16 like {ECO:0000313|EMBL:PSS34462.1}))
HSP 1 Score: 223.787 bits (569), Expect = 1.083e-70
Identity = 133/255 (52.16%), Postives = 164/255 (64.31%), Query Frame = 0
Query: 3 ALSLNSLVCFTSSLPN-YHHTSRIDVGASVQNAAHLVSHPRIVGLR--TKLKKLEPFVLFASGDNIAVDTSDKGSGNAEVSLSDNQPSAENLPSSGTSE-DSQSLASSNLQVQSQTSKDSNGAVVTSEQKEENSPANLKSTPIRSSRLTAREKLRAARILSRKPEPKKPPKLQLGSQVLEVLRESDKGKRRPGLPEAPTNMLDDSKRGMPKKGLTFELPGGNEVFFIILSVVLISTVMFSTTYIVWKVGAIHFNE 253
A+SLN++ F S+L Y H R +G + ++ L S IV LR TK K +L A GD +A DTS+ GSG+AE+S S +Q S LPS +SQ S+ + Q D NG+VV+S NLKS ++ S LTAREKLRAAR+LSR E K K LGS+VLE LRESD+GK++ GLPEAPTN+ DDSKRGMPK G TFE PGG +VF I S V IST+MF+TTY+VWKVGAIHFNE
Sbjct: 2 AVSLNTVSVFNSALQGKYLHAPRSCIGVFLLESSQLASPLGIVRLRRSTKENKWGTCLLVADGDRVATDTSNTGSGHAEISDSGDQSSPATLPSLDVPVVNSQLQTSAETMPEPQKPTDVNGSVVSS---------NLKSG-LKRSPLTAREKLRAARVLSRYTESKASTKPDLGSKVLEALRESDRGKKKSGLPEAPTNLFDDSKRGMPKPGWTFEFPGGVDVFIIAFSFVFISTLMFATTYLVWKVGAIHFNE 246
Match: A0A7J7CRG8 ((Differentiation-associated protein 1 putative isoform 1 {ECO:0000313|EMBL:KAF5736559.1}))
HSP 1 Score: 223.016 bits (567), Expect = 2.766e-70
Identity = 135/264 (51.14%), Postives = 176/264 (66.67%), Query Frame = 0
Query: 3 ALSLNSLVCFTSSLPNYH-HTSRIDVGASVQNAAHLVSHPRIVGLRTKLKKLE-PFVL-FASGDNIAVDTSDKGSGNAEVSLSDNQPSAENLPSSGT---------SEDSQSLASSNLQVQSQTSKDSNGAVVTSEQKEEN-SPANLKSTPIRSSRLTAREKLRAARILSRKPEPKKPPKLQLGSQVLEVLRESDKGKRRPGLPEAPTNMLDDSKRGMPKKGLTFELPGGNEVFFIILSVVLISTVMFSTTYIVWKVGAIHFNE 253
A+SLNS+V F S L + H +TSR VG AA S + G R +K+ + F L A+ D +A D SDKGSGN+ SLSDNQ SA N PS + +ED +S +SQ S +SNG+V++S K+E S N++STP R+S LTARE+L+AAR+L+R + K K ++G ++L+ L+ESDKGK+R LPEAPTN+ DD RGMPK+GLTF+ PGG ++FFI S V ISTVMF+TTYIVWKVGAIHFNE
Sbjct: 2 AVSLNSVVGFNSKLQSRHQNTSRSYVGFLAPKAAQFTSPFVMFGSRNFMKENKWGFCLSVANSDQLASDMSDKGSGNSGTSLSDNQFSAPNSPSPDSPGGINEFQNTEDDES--------RSQVSGNSNGSVLSSPIKQETPSSPNMRSTPKRAS-LTARERLKAARVLNRYTDFKSS-KPEMGRKLLDALKESDKGKKRSRLPEAPTNLFDDRDRGMPKQGLTFQFPGGADLFFIAFSFVFISTVMFATTYIVWKVGAIHFNE 255
Match: B9HSL9 ((Uncharacterized protein {ECO:0000313|EMBL:PNT17337.1}))
HSP 1 Score: 220.32 bits (560), Expect = 1.530e-69
Identity = 131/252 (51.98%), Postives = 162/252 (64.29%), Query Frame = 0
Query: 3 ALSLNSLVCFTSSLPN-YHHTSRIDVGASVQNAAHLVSHPRIVGLRTKLKKLEPFVLFASGDNIAVDTSDKGSGNAEVSLSDNQPSAENLPSSGTSEDSQSLASSNLQVQSQTSKDSNGAVVTSEQKEENSPANLKSTPIRSSRLTAREKLRAARILSRKPEPKKPPKLQLGSQVLEVLRESDKGKRRPGLPEAPTNMLDDSKRGMPKKGLTFELPGGNEVFFIILSVVLISTVMFSTTYIVWKVGAIHFNE 253
A+SLNS+V S+L + Y H SR + L S I G R FV A D + DTS KG G AE S+SDNQ S N +SEDS S + QTS SNG+ V+ A++KS P RS LTARE+L+AAR+LSR E K K ++GS+VL+ +RESDKGK+RPGLPEAP NM DDSKRG+PK+G TFE PGG+E+FFI++S VLIST+MF+TTYIVWKVGAIHF+E
Sbjct: 2 AISLNSVVGINSTLQSRYQHVSR----PKTTSLGMLASRMHINGRRRG-----SFVSAADNDRLVTDTSVKGYGGAESSISDNQLSTVN----SSSEDSPGGNSVGEESGPQTSGASNGSTVS---------ADMKSRPKRSP-LTARERLKAARVLSRYTE-SKASKSEMGSKVLDAMRESDKGKKRPGLPEAPENMFDDSKRGLPKEGWTFEFPGGSELFFIVVSFVLISTIMFATTYIVWKVGAIHFDE 229
Match: W9S208 ((Uncharacterized protein {ECO:0000313|EMBL:EXC04713.1}))
HSP 1 Score: 221.09 bits (562), Expect = 1.579e-69
Identity = 129/255 (50.59%), Postives = 167/255 (65.49%), Query Frame = 0
Query: 3 ALSLNSLVCFTSSLP-NYHHTSRIDVGASVQNAAHLVSHPRIVGLR--TKLKKLEPFVLFASGDNIAVDTSDKGSGNAEVSLSDNQPSAENLPSSGTS-EDSQSLASSNLQVQSQTSKDSNGAVVTSEQKEENSPANLKSTPIRSSRLTAREKLRAARILSRKPEPKKPPKLQLGSQVLEVLRESDKGKRRPGLPEAPTNMLDDSKRGMPKKGLTFELPGGNEVFFIILSVVLISTVMFSTTYIVWKVGAIHFNE 253
A+SLNS++ FTS+L Y + S+ GAS+ A + S G R K K+ + + A GD +TSD GSGNAE LS++Q S NLPSS S E+SQ S + QTS+ SNG+ ++ Q E + + P RS LT RE+LRAAR+LSR K K +GS+VL+ LRESD+GK++ GLPEAP NM DDSKRG+P++G TF+ PGGN++F I+ S V ISTVMF+TTYIVWKVGAIHFNE
Sbjct: 2 AVSLNSVLGFTSTLRIKYQNVSKPSSGASISKACQVKSSFGASGSRRLVKGKRWDFSLSVAEGDRFTAETSDGGSGNAERLLSNDQISTSNLPSSLYSIENSQVQTSPRNESLPQTSEASNGSPISPNQGETLPSTDQQEKPKRSP-LTVRERLRAARVLSRYNTESKASKPDMGSKVLDALRESDRGKKK-GLPEAPGNMFDDSKRGLPQQGFTFQFPGGNDLFIIVFSFVFISTVMFATTYIVWKVGAIHFNE 254
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5AUA4 | E-Value: 3.384e-82, PID: 56.30 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8534... [more] |
| A0A5B6YUY6 | E-Value: 8.187e-82, PID: 56.86 | (Uncharacterized protein {ECO:0000313|EMBL:MPA3547... [more] |
| A0A6A4L1B7 | E-Value: 9.027e-76, PID: 54.33 | (Uncharacterized protein {ECO:0000313|EMBL:KAE9451... [more] |
| A0A7J7H322 | E-Value: 6.660e-74, PID: 53.91 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5947... [more] |
| A0A834LBZ7 | E-Value: 8.998e-72, PID: 54.62 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7132... [more] |
| A0A2R6RR86 | E-Value: 4.023e-71, PID: 52.94 | (Integrator complex subunit 11 like {ECO:0000313|E... [more] |
| A0A2R6RWS9 | E-Value: 1.083e-70, PID: 52.16 | (Mucin-16 like {ECO:0000313|EMBL:PSS34462.1})[more] |
| A0A7J7CRG8 | E-Value: 2.766e-70, PID: 51.14 | (Differentiation-associated protein 1 putative iso... [more] |
| B9HSL9 | E-Value: 1.530e-69, PID: 51.98 | (Uncharacterized protein {ECO:0000313|EMBL:PNT1733... [more] |
| W9S208 | E-Value: 1.579e-69, PID: 50.59 | (Uncharacterized protein {ECO:0000313|EMBL:EXC0471... [more] |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |