Resource Type:
Polypeptide
Name:
XM_017386708.1
Identifier:
XM_017386708.1-protein
Sequence:
MKGGYNGLRAKQLSLFLMAVFCTSILIFGWVKSPIFASLIPPKSRVVNLP
PVLYAQENQLGEGLNDLDGVSKRVDLPEPDHTTNIDFITSEAVEEANERE
LEEGASDSHVQSKRIDLQEPDHSTNNNSFTSESLMIQETTGKAVEVSHGE
NSSKITEDLVAHQNFASTNISLERRENNILTTKNENQDCNYAKGKWITDD
NRPLYSGFGCKKWLSPMWACRLTQRTDFAYEKLRWQPKDCKTKDFTSSNY
LRRMQGKTLAFIGDSLGRQQFQSLMCMVSGGEERPDVIDVGNEFGLVKPH
GHGRPDGWAYRFLSTNSTILYYWSATLCDLEPLDINNPTTEVAMHLDRPP
AFLQHFISKFDVVVLNTGHHWNRGKLNNNRWVMHIGGKRNTNRKLADIGS
AKNFTVYSTVHWLNSELPKFPGLKAFYRSISPRHFFNGEWNTGGTCDNTS
PRSGELEVLQDESADLLAAGSVKGTQVKLLDITALSQLRDEGHISRYSIK
ATPGVQDCLHWCLPGVPDTWNELLFAQI
Sequence Length:
528
Sequence Checksum:
bdb570e047d637e6f7e417efaa68bdcc
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017386708.1, derives from mRNA, XM_017386708.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017386708.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017386708.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZRH2 (PMR5N domain-containing protein {ECO:0000259|Pfam:PF14416})
HSP 1 Score: 672.544 bits (1734), Expect = 0.000e+0
Identity = 330/566 (58.30%), Postives = 407/566 (71.91%), Query Frame = 0
Match: A0A5B6ZRH2 (PMR5N domain-containing protein {ECO:0000259|Pfam:PF14416})
HSP 1 Score: 672.544 bits (1734), Expect = 0.000e+0
Identity = 330/566 (58.30%), Postives = 407/566 (71.91%), Query Frame = 0
Query: 1 MKGGYNGLRAKQLSLFLMAVFCTSILIFGWVKSPIFASLIPPKSRVVNLPPVLYAQ-------ENQLGEGLN-DLDGVSKRVDLPEPDH-------------------TTNIDFITSEAVEEANERELEEGAS-DSHVQSKRIDLQEPDH-------STNNNSFTSESLMIQETTGKAVEVSHGENSSKITE---DLVAHQNFASTNISLERRENNILTTKNENQDCNYAKGKWITDDNRPLYSGFGCKKWLSPMWACRLTQRTDFAYEKLRWQPKDCKTKDFTSSNYLRRMQGKTLAFIGDSLGRQQFQSLMCMVSGGEERPDVIDVGNEFGLVKPHGHGRPDGWAYRFLSTNSTILYYWSATLCDLEPLDINNPTTEVAMHLDRPPAFLQHFISKFDVVVLNTGHHWNRGKLNNNRWVMHIGGKRNTNRKLADIGSAKNFTVYSTVHWLNSELPKFPGLKAFYRSISPRHFFNGEWNTGGTCDNTSPRSGELEVLQDESADLLAAGSVKGTQVKLLDITALSQLRDEGHISRYSIKATPGVQDCLHWCLPGVPDTWNELLFAQI 528
MKGG+ GL+AKQLSLFL+ + CT+ILI+ W K+P+ SL+PP+S ++ L P + ++ + +N D+ V+++ + E + ++ IT+ V++ NE + E + D V+ + DH S + ++ +E VS G N S++ + DLVA N ST+ + +EN+ L T E Q CNYAKGKW+TD++RPLYSGFGCK+WLS MWACRLTQR DFAYEKLRWQPK+C+ +FT S +LRRMQ KTLA +GDSLGRQQFQSLMCM++GG+ER DV+DVG E+GLVK G RPDGWAYRF STN+TILYYWSA+LCDLEPLDI NP T AMHLDRPPAFL+ F+ KFDV+VLNTGHHWNRGKL NRW+MH+GG NT+RK+A I AKNFT+YS V+W+NS+LPK+PGLKAFYRSISPRHFFNG+WNTGGTCDNT+P SG EVLQD S D LAAG+VKG V+ LDITALSQLRDEGHISRYSIKATPG+QDCLHWCLPGVPD WNE+LFAQI
Sbjct: 1 MKGGFYGLKAKQLSLFLITLVCTTILIWAWDKTPLLTSLLPPQSHLLRLSPEIIINAPLASSISSKPHKNVNEDISTVAEKETVNEQNEQHFDAADRMGLTKSTPEIGKVEMNVITTPVVKKGNESAVAEKETIDGQVEQRFSAATPMDHAKSSIEMSKTETNVVKTPIVKKEEEATLERVSGGGNGSELVDKSVDLVAPVN--STSSFVRGKENSNLMTDTEKQACNYAKGKWVTDNSRPLYSGFGCKQWLSGMWACRLTQRVDFAYEKLRWQPKNCEMVEFTGSKFLRRMQDKTLAIVGDSLGRQQFQSLMCMITGGKERSDVVDVGREYGLVKARGAVRPDGWAYRFPSTNTTILYYWSASLCDLEPLDITNPATNYAMHLDRPPAFLRRFLHKFDVLVLNTGHHWNRGKLQANRWIMHVGGMPNTDRKIAAIAGAKNFTIYSIVNWVNSQLPKYPGLKAFYRSISPRHFFNGDWNTGGTCDNTTPLSGGKEVLQDISGDPLAAGAVKGMGVQFLDITALSQLRDEGHISRYSIKATPGMQDCLHWCLPGVPDAWNEILFAQI 564
BLAST of XM_017386708.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AYA4 (PMR5N domain-containing protein {ECO:0000259|Pfam:PF14416})
HSP 1 Score: 652.514 bits (1682), Expect = 0.000e+0
Identity = 319/561 (56.86%), Postives = 401/561 (71.48%), Query Frame = 0
Match: A0A5J5AYA4 (PMR5N domain-containing protein {ECO:0000259|Pfam:PF14416})
HSP 1 Score: 652.514 bits (1682), Expect = 0.000e+0
Identity = 319/561 (56.86%), Postives = 401/561 (71.48%), Query Frame = 0
Query: 1 MKGGYNGLRAKQLSLFLMAVFCTSILIFGWVKSPIFASLIPPK---SRVVNLPPVLYAQENQLGEGLNDLDGVSKRVDLPEPDH--------------TTNID----------FITSEAVEEANERELEEGASDSHVQSKRI--DLQEPDHSTNNNSFTSESLMIQETTGKAVE-VSHGENSSKITE---DLVAHQNFASTNISLERRENNILTTKNENQDCNYAKGKWITDDNRPLYSGFGCKKWLSPMWACRLTQRTDFAYEKLRWQPKDCKTKDFTSSNYLRRMQGKTLAFIGDSLGRQQFQSLMCMVSGGEERPDVIDVGNEFGLVKPHGHGRPDGWAYRFLSTNSTILYYWSATLCDLEPLDINNPTTEVAMHLDRPPAFLQHFISKFDVVVLNTGHHWNRGKLNNNRWVMHIGGKRNTNRKLADIGSAKNFTVYSTVHWLNSELPKFPGLKAFYRSISPRHFFNGEWNTGGTCDNTSPRSGELEVLQDESADLLAAGSVKGTQVKLLDITALSQLRDEGHISRYSIKATPGVQDCLHWCLPGVPDTWNELLFAQI 528
MKGG+ GL+AK+LSL L+A+ CTSILI+ W K+P+ SL+PP+ V+N P D+ V ++ + E + T+ I + +E + E+E+ +G + D + + ++ ++ ++++ G +E V+ G++ S++ + D+VA NF S+ S+ +EN+ TT Q CNYAKGKW+ DD RPLYSGFGCK+WLS MWACRLTQRTDFAYEKLRWQPK+C+ ++FT S +LRRMQ KTLAF+GDSLGRQQFQSLMCM++GGEER DV+DVG E+GLVK G RPDGWAYRF STN+TILYYWSA+LCDLEP+DI NP T+ AMHLDRPPAFL+HF+ KFDV+VLNTGHHWN GKL NRW++H+GG K DI AKNFT+YS V+W+NS+LPK+PGLKAFYRSISPRHFFNG+WNTGGTCDNT+P +G EVLQD S D LAAG+V+G VK LDITALSQLRDEGHISRYSIKATPG+QDCLHWCLPGVPDTWNE++FAQ+
Sbjct: 1 MKGGFYGLKAKELSLILIALVCTSILIWAWEKTPVLTSLLPPRLSPGIVLNTPHASSVSSKPHKNVNEDISSVVQKETVNEQNEQHFDAEDQTGLKKSTSEIGNVEMNVIKTPLVNNEDISAGVEKEIRDGEKKQRFSTAAPTGDAKSSIEISKTDTNVVKTPVVKKEEGATLERVAEGKSGSELADKSVDIVAPVNFTSS--SVRGKENSNFTTVKGKQVCNYAKGKWVNDDRRPLYSGFGCKQWLSGMWACRLTQRTDFAYEKLRWQPKNCEMEEFTGSKFLRRMQDKTLAFVGDSLGRQQFQSLMCMITGGEERTDVVDVGREYGLVKARGSIRPDGWAYRFPSTNTTILYYWSASLCDLEPIDIANPATDYAMHLDRPPAFLRHFLHKFDVLVLNTGHHWNSGKLRKNRWIVHVGGV----PKPIDIAGAKNFTIYSIVNWVNSQLPKYPGLKAFYRSISPRHFFNGDWNTGGTCDNTTPLAGGKEVLQDSSDDPLAAGAVQGMAVKFLDITALSQLRDEGHISRYSIKATPGMQDCLHWCLPGVPDTWNEIIFAQL 555
BLAST of XM_017386708.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QUM9 ((Protein trichome birefringence-like {ECO:0000313|EMBL:PSS15454.1}))
HSP 1 Score: 646.736 bits (1667), Expect = 0.000e+0
Identity = 311/528 (58.90%), Postives = 389/528 (73.67%), Query Frame = 0
Match: A0A2R6QUM9 ((Protein trichome birefringence-like {ECO:0000313|EMBL:PSS15454.1}))
HSP 1 Score: 646.736 bits (1667), Expect = 0.000e+0
Identity = 311/528 (58.90%), Postives = 389/528 (73.67%), Query Frame = 0
Query: 1 MKGGYNGLRAKQLSLFLMAVFCTSILIFGWVKSPIFASLIPPKSRVVNLPPVLYAQENQLGEGLNDLDGVSKRVDLPEPDHTTNIDFITSEAVEEANERELEEGASDSHVQSKRIDLQEPDHSTNNNSFTSESLMIQETTGKAVEVSHGENSSKITEDLVAHQNFASTNISLERRENNILTTKNENQDCNYAKGKWITDDNRPLYSGFGCKKWLSPMWACRLTQRTDFAYEKLRWQPKDCKTKDFTSSNYLRRMQGKTLAFIGDSLGRQQFQSLMCMVSGGEERPDVIDVGNEFGLVKPHGHGRPDGWAYRFLSTNSTILYYWSATLCDLEPLDINNPTTEVAMHLDRPPAFLQHFISKFDVVVLNTGHHWNRGKLNNNRWVMHIGGKRNTNRKLADIGSAKNFTVYSTVHWLNSELPKFPGLKAFYRSISPRHFFNGEWNTGGTCDNTSPRSGELEVLQDESADLLAAGSVKGTQVKLLDITALSQLRDEGHISRYSIKATPGVQDCLHWCLPGVPDTWNELLFAQI 528
MKGG+ GLR KQ+SL L+A+ CT++LI+GW K+PI SL+PP+ R+ P ++ G ++ ++ + +I +T + V + E+E D+ QS I + T N T+ + + K +E S A+ + LE+ ++ E++ C+YAKGKW+ DD+RPLYSG GCK+WLS MWAC LTQRTDFAYEKLRW+PK+C ++FT S +LRRMQ KT+AF+GDSLGRQQFQSLMCMV+GGEE PDV+DVG E+GLVK G RPDGWAYRF STN+TILYYWSA+LCDLEPL+I NP ++ AMHLDRPPAFLQ F+ FD++VLNTGHHWNRGK NRWVMH+GG NTNRK+AD+G+AKNFT+YS VHW+NS+LPK PGLKAF+R+ISPRHFFNG+WNTGGTCDNT+P G+ EVLQDES+D LA+G+V GT+V LLDITA+SQLRDEGHISRYSI+ATPG+QDCLHWCLPGVPDTWNELLFAQ+
Sbjct: 1 MKGGFYGLRGKQISLILVALVCTTVLIWGWEKTPILTSLLPPQGRLSQFSP-------EILMGAPTVNTIASK---------PHISAVTDKEVVD----EVEGHHFDAGNQSDPIQISPETGKTETNVTTAPFVKKGDILEKEIEKEQKGKHSD-----------AADRMDLEK------SSPAEDRACSYAKGKWVPDDSRPLYSGLGCKQWLSSMWACHLTQRTDFAYEKLRWKPKNCAMEEFTRSKFLRRMQNKTIAFVGDSLGRQQFQSLMCMVTGGEEMPDVLDVGREYGLVKARGAIRPDGWAYRFPSTNTTILYYWSASLCDLEPLNITNPASDYAMHLDRPPAFLQRFLPNFDILVLNTGHHWNRGKFQANRWVMHVGGVPNTNRKIADVGNAKNFTIYSVVHWVNSQLPKHPGLKAFFRTISPRHFFNGDWNTGGTCDNTTPSEGK-EVLQDESSDPLASGAVIGTEVTLLDITAISQLRDEGHISRYSIRATPGMQDCLHWCLPGVPDTWNELLFAQL 490
BLAST of XM_017386708.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J6UUM8 ((Trichome birefringence-like {ECO:0000313|EMBL:KAF5176286.1}))
HSP 1 Score: 631.328 bits (1627), Expect = 0.000e+0
Identity = 317/580 (54.66%), Postives = 395/580 (68.10%), Query Frame = 0
Match: A0A7J6UUM8 ((Trichome birefringence-like {ECO:0000313|EMBL:KAF5176286.1}))
HSP 1 Score: 631.328 bits (1627), Expect = 0.000e+0
Identity = 317/580 (54.66%), Postives = 395/580 (68.10%), Query Frame = 0
Query: 1 MKGGYNGLRAKQLSLFLMAVFCTSILIFGWVKSPIFASLIPPKSRVVNLPPVLYAQENQLGEGLNDLDGVSKRVDLPEPDHTTNIDFITSEAVEEANERELEEGASDSHVQSKRIDLQEP----------------------DHSTNNNSFTSESLMIQET-TGKAVEVSH---------------------------GENSSKITEDLV--AHQNFASTNISLERRENNILTTKNENQDCNYAKGKWITDDNRPLYSGFGCKKWLSPMWACRLTQRTDFAYEKLRWQPKDCKTKDFTSSNYLRRMQGKTLAFIGDSLGRQQFQSLMCMVSGGEERPDVIDVGNEFGLVKPHGHGRPDGWAYRFLSTNSTILYYWSATLCDLEPLDINNPTTEVAMHLDRPPAFLQHFISKFDVVVLNTGHHWNRGKLNNNRWVMHIGGKRNTNRKLADIGSAKNFTVYSTVHWLNSELPKFPGLKAFYRSISPRHFFNGEWNTGGTCDNTSPRSGELEVLQDESADLLAAGSVKGTQVKLLDITALSQLRDEGHISRYSIKATPGVQDCLHWCLPGVPDTWNELLFAQI 528
MKGGY GLR KQ+SL L+A+ CTSI+I+ W K+P+ A+ +PP+S++ L P +QE +GE + + + + + E NI SE E ERE + + +ID++E +H + + T E + E G SH GE S+++ E+ Q + T S + N E + CNYAKGKWI D RPLYSGFGCK+WLS MWACRLTQRTDF+YE RW PK+C+ DF +++L+RMQ KT+A IGDSLGRQQFQSLMCMV+GG+ R DV+DVG EFGLVK HG RPDGWAYRF STN+TILYYWSA+L DLEP++I NP T+ AMHLDRPPAFL+H++ +FDVVVLNTGHHWNRGKL NRWVM++GG NTNRK+A+IG AKNFT+YS V WL+S+LPK P LKAF+R+ISPRHFF+G+WN+GG+CDNT+P +G EV QDES+D +AAG+VKGT VKLLDITA+S+LRDEGHISRYSIKATPGVQDCLHWCLPGVPDTWNE+LFAQ+
Sbjct: 1 MKGGYYGLRGKQISLTLIALICTSIVIWAWDKTPLLATFLPPQSQL--LKP---SQEIIMGEPVTNSISSKQEIHVKE-----NITHAVSE--EGRTERENKSIVDPAKNTPDKIDIEEKIPIVEQKGTLSGPSEEQEELKEEHDGDTKTETVEKTLDSEILIGSKTTTSHNKEKDANPTIDHEEKKEEEKNINDGLNGETSTELVEEKSDSGTQMGSETTASYKPEHTNTTINLEEKKACNYAKGKWIEDSTRPLYSGFGCKQWLSEMWACRLTQRTDFSYESFRWHPKNCEMPDFKGTSFLKRMQDKTIAIIGDSLGRQQFQSLMCMVTGGKHRSDVLDVGREFGLVKAHGAVRPDGWAYRFPSTNTTILYYWSASLSDLEPINITNPATDWAMHLDRPPAFLRHYLHRFDVVVLNTGHHWNRGKLKANRWVMYVGGVPNTNRKIAEIGGAKNFTIYSVVKWLDSQLPKHPKLKAFFRTISPRHFFHGDWNSGGSCDNTTPLAGGKEVSQDESSDPVAAGAVKGTGVKLLDITAISELRDEGHISRYSIKATPGVQDCLHWCLPGVPDTWNEVLFAQL 568
BLAST of XM_017386708.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4CP87 ((protein trichome birefringence-like 14 {ECO:0000313|RefSeq:XP_016503072.1, ECO:0000313|RefSeq:XP_016503073.1}))
HSP 1 Score: 626.32 bits (1614), Expect = 0.000e+0
Identity = 310/541 (57.30%), Postives = 386/541 (71.35%), Query Frame = 0
Match: A0A1S4CP87 ((protein trichome birefringence-like 14 {ECO:0000313|RefSeq:XP_016503072.1, ECO:0000313|RefSeq:XP_016503073.1}))
HSP 1 Score: 626.32 bits (1614), Expect = 0.000e+0
Identity = 310/541 (57.30%), Postives = 386/541 (71.35%), Query Frame = 0
Query: 1 MKGGYNGLRAKQLSLFLMAVFCTSILIFGWVKSPIFASLIPPKSRVVNLPPVLYAQ-ENQLGEGLNDLDGVSKRVDLPEPDHTTNID----FITSEAVEEANERELEEGASDSHVQSKRIDLQEPDHSTNNNSF----TSESLMIQETTGKAVEVSHGENSSKITEDL----VAHQNFASTNISLERRENNILTTKNENQDCNYAKGKWITDDNRPLYSGFGCKKWLSPMWACRLTQRTDFAYEKLRWQPKDCKTKDFTSSNYLRRMQGKTLAFIGDSLGRQQFQSLMCMVSGGEERPDVIDVGNEFGLVKPHGHGRPDGWAYRFLSTNSTILYYWSATLCDLEPLDINNPTTEVAMHLDRPPAFLQHFISKFDVVVLNTGHHWNRGKLNNNRWVMHIGGKRNTNRKLADIGSAKNFTVYSTVHWLNSELPKFPGLKAFYRSISPRHFFNGEWNTGGTCDNTSPRSGELEVLQDESADLLAAGSVKGTQVKLLDITALSQLRDEGHISRYSIKATPGVQDCLHWCLPGVPDTWNELLFAQI 528
MKGG L+ Q+SL L+ C ++L+ +VKS +S + P++ V+ L P L + E L EG + L + V+L ++T + +E + ++ L EG V+ + ++ + +ST NS SE L +E G + K D + Q ST +S + LTT + Q C +AKG+W+ DD+RPLYSGFGCK+WLS MWACRLTQRTDF YEKLRW+PKDC+ +FT +L+RMQ KTLAFIGDSLGRQQFQSLMCM++GG++RP+V+DVG+E+GLV+ G RPDGWAYRF T +TILYYWSA+LCDL P++ ++P T+ AMHLDRPPAFL HF+ KFDVVVLNTGHHWNRGKL NRWVM++ G NTNRK+A IG AKNFT++S V+W+NS+LPK P LKAFYRSISPRHFFNGEWNTGGTCDNT+P S EVLQDES+D AA +V+GT VKLLDITALSQLRDEGHISRYSIKATPGVQDCLHWCLPGVPDTWNE+LFAQ+
Sbjct: 1 MKGG---LKVSQISLILIGFVCATVLLLAYVKSLFLSSPVLPQNHVLQLSPDLKVKDEEALVEG-SGLGQSEESVNLVSEKYSTYTNSSPAIKVTEELISHDKEALGEGGGSGQVE-ESVNFESEKYSTYTNSSPVIKVSEELSTREEIGGGAPNFTKKGDLKDVSDKKIGSIKQQTDVSTPVSSGGEHSKNLTTTLKRQGCRFAKGRWVVDDSRPLYSGFGCKQWLSSMWACRLTQRTDFEYEKLRWRPKDCQMDEFTGVKFLKRMQNKTLAFIGDSLGRQQFQSLMCMITGGKDRPNVLDVGHEYGLVQSRGSARPDGWAYRFPDTKTTILYYWSASLCDLTPINPSDPATDYAMHLDRPPAFLSHFLPKFDVVVLNTGHHWNRGKLKANRWVMYVNGVPNTNRKMATIGGAKNFTIHSIVNWMNSQLPKHPRLKAFYRSISPRHFFNGEWNTGGTCDNTTPLSEGKEVLQDESSDPDAAAAVRGTAVKLLDITALSQLRDEGHISRYSIKATPGVQDCLHWCLPGVPDTWNEILFAQL 536
BLAST of XM_017386708.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G5C8M2 (PMR5N domain-containing protein {ECO:0000259|Pfam:PF14416})
HSP 1 Score: 624.78 bits (1610), Expect = 0.000e+0
Identity = 312/580 (53.79%), Postives = 394/580 (67.93%), Query Frame = 0
Match: A0A2G5C8M2 (PMR5N domain-containing protein {ECO:0000259|Pfam:PF14416})
HSP 1 Score: 624.78 bits (1610), Expect = 0.000e+0
Identity = 312/580 (53.79%), Postives = 394/580 (67.93%), Query Frame = 0
Query: 1 MKGGYNGLRAKQLSLFLMAVFCTSILIFGWVKSPIFASLIPPKSRVVNLPPVLYAQENQLGEGLNDLDGVSKRVDLPEPDHTTNIDFITSEAVEEANERELEEGASDSHVQSKRIDLQEP--------------------DHSTNNNSFTSESLMIQET-TGKAVEVSHGENSSKITEDLVAHQ------------------------------NFASTNI-SLERRENNILTTKNENQDCNYAKGKWITDDNRPLYSGFGCKKWLSPMWACRLTQRTDFAYEKLRWQPKDCKTKDFTSSNYLRRMQGKTLAFIGDSLGRQQFQSLMCMVSGGEERPDVIDVGNEFGLVKPHGHGRPDGWAYRFLSTNSTILYYWSATLCDLEPLDINNPTTEVAMHLDRPPAFLQHFISKFDVVVLNTGHHWNRGKLNNNRWVMHIGGKRNTNRKLADIGSAKNFTVYSTVHWLNSELPKFPGLKAFYRSISPRHFFNGEWNTGGTCDNTSPRSGELEVLQDESADLLAAGSVKGTQVKLLDITALSQLRDEGHISRYSIKATPGVQDCLHWCLPGVPDTWNELLFAQI 528
MKGG+ GLR KQ+SL L+A+ CTSI+I+ W K+P+ A+ +PP+S+++ P + G+ + +S + D+ + T+ ++ E+ E + + + A ++ +ID++E +H + N+ T E ET G SH +S K + H+ S NI S N E + CNYAKGKWI D RPLYSGFGCK+WLS MWACRLTQRTDF+YE RW PK+C+ DF S++L+RMQ +T+A IGDSLGRQQFQSLMCMV+GG++R DV+DVG EFGLVK HG RPDGWAYRF STN+TILYYWSA+L DLEP++ NP T+ AMHLDRPPAFL+H++ +FDVVVLNTGHHWNRGKL NRWVM++GG NTNRK+A+IG AKNFT++S V WL+S+LPK P LKAF+R+ISPRHFF+G+WN+GG+CDNT+P +G EV QDES+D AAG+VKGT+VKLLDITALSQLRDEGHISRYSIKATPGVQDCLHWCLPGVPDTWNELLFAQ+
Sbjct: 1 MKGGFYGLRGKQISLTLIALICTSIVIWAWDKTPLLATFLPPQSQLLKPSPEIIM-------GVPVTNSISSKRDIHVKEDLTHA--VSEESRMEQENKSVVDPAKNT---PDKIDIKEKIPIVEQKGSGPSEEQEELKEEHDGDTNTETVEKTPDSETLMGSKTTTSHDSDSEKDANPTIDHEEKKEEEKIFKEGLSGETLTELVDEKSDSGAQMGSENITSYNPEHTNTTINLKEKKACNYAKGKWIEDSTRPLYSGFGCKQWLSEMWACRLTQRTDFSYESFRWHPKNCEMPDFQGSSFLKRMQDETIAIIGDSLGRQQFQSLMCMVTGGKQRSDVLDVGREFGLVKAHGAARPDGWAYRFPSTNTTILYYWSASLSDLEPINRTNPATDWAMHLDRPPAFLRHYLHRFDVVVLNTGHHWNRGKLKANRWVMYVGGVPNTNRKIAEIGGAKNFTIHSIVKWLDSQLPKHPKLKAFFRTISPRHFFHGDWNSGGSCDNTTPLAGGKEVSQDESSDPGAAGAVKGTRVKLLDITALSQLRDEGHISRYSIKATPGVQDCLHWCLPGVPDTWNELLFAQL 568
BLAST of XM_017386708.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8B3H6 ((protein trichome birefringence-like 14 isoform X1 {ECO:0000313|RefSeq:XP_010273849.1, ECO:0000313|RefSeq:XP_010273850.1}))
HSP 1 Score: 624.009 bits (1608), Expect = 0.000e+0
Identity = 305/542 (56.27%), Postives = 387/542 (71.40%), Query Frame = 0
Match: A0A1U8B3H6 ((protein trichome birefringence-like 14 isoform X1 {ECO:0000313|RefSeq:XP_010273849.1, ECO:0000313|RefSeq:XP_010273850.1}))
HSP 1 Score: 624.009 bits (1608), Expect = 0.000e+0
Identity = 305/542 (56.27%), Postives = 387/542 (71.40%), Query Frame = 0
Query: 1 MKGGYNGLRAKQLSLFLMAVFCTSILIFGWVKSPIFASLIPPKSRVVNLPPVLYAQENQLGEGLNDLDGVSKRVDLPEPDHTTNIDFITSEAVEEANERE---LEEGASDSHVQSKRIDLQEPDHSTNNNSFTSESLMIQETTGKAV--------EVSHGENSSKITE---DLVAHQNFASTNISLERRENNILTTKNENQDCNYAKGKWITDDNRPLYSGFGCKKWLSPMWACRLTQRTDFAYEKLRWQPKDCKTKDFTSSNYLRRMQGKTLAFIGDSLGRQQFQSLMCMVSGGEERPDVIDVGNEFGLVKPHGHGRPDGWAYRFLSTNSTILYYWSATLCDLEPLDINNPTTEVAMHLDRPPAFLQHFISKFDVVVLNTGHHWNRGKLNNNRWVMHIGGKRNTNRKLADIGSAKNFTVYSTVHWLNSELPKFPGLKAFYRSISPRHFFNGEWNTGGTCDNTSPRSGELEVLQDESADLLAAGSVKGTQVKLLDITALSQLRDEGHISRYSIKATPGVQDCLHWCLPGVPDTWNELLFAQI 528
MKGG++GLRAKQLSL L+A+ CT + I+ W K+P+ SL+PP+SR ++P ++ I F + V+E + ++E +S++ + + S +N+ T + +E + A+ GE K E + +A + + N ++ + + T + + CNYAKGKW+ DD RPLYSGFGCK+WLS MWACRLTQRTDF+YE RWQP++C+ DF S +LRRMQ KT+AF+GDSLGRQQFQSLMCMV+GGEE PDV+DVG+E+GLVK G RPDGWAYRFL+TN+TILYYWSA+LCDLEPL+I +P T+ AMHLDRP AFL+H++ +FDV+VLNTGHHWNRGKL NRWVMH+GG NTNRKLADI SAKNFT+YS V WL+ +LPK P L+AF+R+ISPRHFFNGEWN+GG+CDNT+P +G EVLQD S+D +A G+VKGT VK LDITALSQLRDEGHISRYSIKATPGVQDCLHWCLPG+PDTWNE+L+AQ+
Sbjct: 1 MKGGFHGLRAKQLSLSLIALVCTFVFIWAWEKTPLLTSLLPPQSRF-SMP-------------------------------SSEILF-GAPVVKEMSSNPGIYVKEESSNAVAPMRSANTSSSKKSITDNNSTPPPMEKEEISPTALGKWGAAPKPGPKGEKGPKKVEQDANRIAMMDSETNNSFVKGKGDADEPTLVKEKVCNYAKGKWVADDRRPLYSGFGCKQWLSGMWACRLTQRTDFSYESFRWQPENCEMPDFEGSKFLRRMQNKTVAFVGDSLGRQQFQSLMCMVTGGEESPDVLDVGSEYGLVKNPGAVRPDGWAYRFLNTNTTILYYWSASLCDLEPLNITDPATDYAMHLDRPAAFLRHYLHRFDVLVLNTGHHWNRGKLKANRWVMHVGGVPNTNRKLADIASAKNFTIYSVVKWLDLQLPKHPQLRAFFRAISPRHFFNGEWNSGGSCDNTTPLTGGKEVLQDNSSDPVAEGAVKGTDVKFLDITALSQLRDEGHISRYSIKATPGVQDCLHWCLPGIPDTWNEILYAQL 509
BLAST of XM_017386708.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7VZ23 ((protein trichome birefringence-like 14 {ECO:0000313|RefSeq:XP_009771617.1, ECO:0000313|RefSeq:XP_009771618.1}))
HSP 1 Score: 624.009 bits (1608), Expect = 0.000e+0
Identity = 309/541 (57.12%), Postives = 386/541 (71.35%), Query Frame = 0
Match: A0A1U7VZ23 ((protein trichome birefringence-like 14 {ECO:0000313|RefSeq:XP_009771617.1, ECO:0000313|RefSeq:XP_009771618.1}))
HSP 1 Score: 624.009 bits (1608), Expect = 0.000e+0
Identity = 309/541 (57.12%), Postives = 386/541 (71.35%), Query Frame = 0
Query: 1 MKGGYNGLRAKQLSLFLMAVFCTSILIFGWVKSPIFASLIPPKSRVVNLPPVLYAQ-ENQLGEGLNDLDGVSKRVDLPEPDHTTNID----FITSEAVEEANERELEEGASDSHVQSKRIDLQEPDHSTNNNSF----TSESLMIQETTGKAVEVSHGENSSKITEDL----VAHQNFASTNISLERRENNILTTKNENQDCNYAKGKWITDDNRPLYSGFGCKKWLSPMWACRLTQRTDFAYEKLRWQPKDCKTKDFTSSNYLRRMQGKTLAFIGDSLGRQQFQSLMCMVSGGEERPDVIDVGNEFGLVKPHGHGRPDGWAYRFLSTNSTILYYWSATLCDLEPLDINNPTTEVAMHLDRPPAFLQHFISKFDVVVLNTGHHWNRGKLNNNRWVMHIGGKRNTNRKLADIGSAKNFTVYSTVHWLNSELPKFPGLKAFYRSISPRHFFNGEWNTGGTCDNTSPRSGELEVLQDESADLLAAGSVKGTQVKLLDITALSQLRDEGHISRYSIKATPGVQDCLHWCLPGVPDTWNELLFAQI 528
MKGG L+ Q+SL L+ C ++L+ +VKS +S + P++ V+ L P L + E L EG + L + V+L ++T + +E + ++ L EG V+ + ++ + +ST NS SE L +E G + K D + Q ST +S + LTT + Q C +AKG+W+ DD+RPLYSGFGCK+WLS MWACRLTQRTDF YEKLRW+PKDC+ +FT +L+RMQ KTLAFIGDSLGRQQFQSLMCM++GG++RP+V++VG+E+GLV+ G RPDGWAYRF T +TILYYWSA+LCDL P++ ++P T+ AMHLDRPPAFL HF+ KFDVVVLNTGHHWNRGKL NRWVM++ G NTNRK+A IG AKNFT++S V+W+NS+LPK P LKAFYRSISPRHFFNGEWNTGGTCDNT+P S EVLQDES+D AA +V+GT VKLLDITALSQLRDEGHISRYSIKATPGVQDCLHWCLPGVPDTWNE+LFAQ+
Sbjct: 1 MKGG---LKVSQISLILIGFVCATVLLLAYVKSLFLSSPVLPQNHVLQLSPDLKVKDEEALVEG-SGLGQSEESVNLVSEKYSTYTNSSPAIKVTEELISHDKEALGEGGGSGQVE-ESVNFESEKYSTYTNSSPVIKVSEELCTREEIGGGAPNFTKKGDLKDVSDKKIGSIKQQTDVSTPVSSGGEHSKNLTTTLKRQGCRFAKGRWVVDDSRPLYSGFGCKQWLSSMWACRLTQRTDFEYEKLRWRPKDCQMDEFTGVKFLKRMQNKTLAFIGDSLGRQQFQSLMCMITGGKDRPNVLNVGHEYGLVQSRGSARPDGWAYRFPDTKTTILYYWSASLCDLTPINPSDPATDYAMHLDRPPAFLSHFLPKFDVVVLNTGHHWNRGKLKANRWVMYVNGVPNTNRKMATIGGAKNFTIHSIVNWMNSQLPKHPHLKAFYRSISPRHFFNGEWNTGGTCDNTTPLSEGKEVLQDESSDPDAAAAVRGTAVKLLDITALSQLRDEGHISRYSIKATPGVQDCLHWCLPGVPDTWNEILFAQL 536
BLAST of XM_017386708.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4WH88 (PMR5N domain-containing protein {ECO:0000259|Pfam:PF14416})
HSP 1 Score: 622.468 bits (1604), Expect = 0.000e+0
Identity = 308/539 (57.14%), Postives = 386/539 (71.61%), Query Frame = 0
Match: V4WH88 (PMR5N domain-containing protein {ECO:0000259|Pfam:PF14416})
HSP 1 Score: 622.468 bits (1604), Expect = 0.000e+0
Identity = 308/539 (57.14%), Postives = 386/539 (71.61%), Query Frame = 0
Query: 1 MKGGYNGLRAKQLSLFLMAVFCTSILIFGWVKSPIFASLIPPKSRVVNLPPVLY----AQENQLGEGLNDLDGVSKRVDLPEPDHTTNIDFITSEAVEEA--NERELEEGASDSHVQSKRIDLQEPDHSTNNNSFTSESLMIQETTGKAVEVSHGENSSKITEDLVAHQNFA-STNISLERR----ENNILTTKNENQDCNYAKGKWITDDNRPLYSGFGCKKWLSPMWACRLTQRTDFAYEKLRWQPKDCKTKDFTSSNYLRRMQGKTLAFIGDSLGRQQFQSLMCMVSGGEERPDVIDVGNEFGLVKPHGHGRPDGWAYRFLSTNSTILYYWSATLCDLEPLDINNPTTEVAMHLDRPPAFLQHFISKFDVVVLNTGHHWNRGKLNNNRWVMHIGGKRNTNRKLADIGSAKNFTVYSTVHWLNSELPKFPGLKAFYRSISPRHFFNGEWNTGGTCDNTSPRSGELEVLQDESADLLAAGSVKGTQVKLLDITALSQLRDEGHISRYSIKATPGVQDCLHWCLPGVPDTWNELLFAQI 528
MKG + LR K+LSL L+ + CT+I ++ W ++P A+ +PPKSR + L + + E+Q+ + + + +NI E +E E ++ + K + E + S N++ +++ E GK + GE +SK+ ++ V ++ A S N+S R EN+ T +NQ CNYAKGKW+ DD+RPLYSG CK+WLS MWACRL QRTDFAYE+LRWQPKDC+ ++F S +L RMQ +TLAFIGDSLGRQQFQSLMCMV+GG+ERPDV DVG E+GLVKP G RP+GWAYRF STN+TILYYWSA LCDL+PL+I NP TE AMHLDR PAFL+ ++ KFDV+VLNTGHHWNRGKL NRWVMH+GG NTNRK+ADI AKNFT++S V W+NS+LP+ P LKAFYRSISPRHF NG+WNTGG+CDNT+P S EVLQDES+D A +VKGT VKLLDITALSQ+RDEGHIS+YSI A+ GVQDCLHWCLPGVPDTWNE+LFAQ+
Sbjct: 1 MKGTFFRLRGKELSLILIVLVCTTIFVWTWDRTPFLATFLPPKSRFLWLSSDAFTNSVSPESQIHMNKDISTSAENKTVNYQEGQLSNILAPAGPVAETIPDKRKETTESLAEGQAKDKHVVEAEKNSSAENSTILTKT----EENGKK---NLGEKNSKLEKESVDRRSSADSANLSSSERIKADENS--TMLEQNQACNYAKGKWVVDDSRPLYSGAHCKQWLSQMWACRLMQRTDFAYERLRWQPKDCQMEEFEGSRFLTRMQDRTLAFIGDSLGRQQFQSLMCMVTGGKERPDVEDVGKEYGLVKPRGAIRPNGWAYRFPSTNTTILYYWSACLCDLDPLNITNPATEYAMHLDRAPAFLRQYLHKFDVLVLNTGHHWNRGKLKANRWVMHVGGMPNTNRKIADIAGAKNFTIHSIVSWVNSQLPEHPRLKAFYRSISPRHFVNGDWNTGGSCDNTTPMSIGKEVLQDESSDYSAGSAVKGTGVKLLDITALSQVRDEGHISQYSITASRGVQDCLHWCLPGVPDTWNEILFAQL 530
BLAST of XM_017386708.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N0UVP0 (PMR5N domain-containing protein {ECO:0000259|Pfam:PF14416})
HSP 1 Score: 622.468 bits (1604), Expect = 0.000e+0
Identity = 308/540 (57.04%), Postives = 387/540 (71.67%), Query Frame = 0
Match: A0A7N0UVP0 (PMR5N domain-containing protein {ECO:0000259|Pfam:PF14416})
HSP 1 Score: 622.468 bits (1604), Expect = 0.000e+0
Identity = 308/540 (57.04%), Postives = 387/540 (71.67%), Query Frame = 0
Query: 1 MKGGYNGLRAKQLSLFLMAVFCTSILIFGWVKSPIFASLIPPKSRVVNLP-----------PVLYAQENQLGEGLNDLDGVSKRVDLPEPDHTTNIDFITSEAVEEANERELEEGASDSHVQSKRIDLQ-EPDHSTNNNSFTSESLMIQETTGKAVEVSHGENSSKITEDLVAHQNFASTNISLERRENNILTTKNENQDCNYAKGKWITDDNRPLYSGFGCKKWLSPMWACRLTQRTDFAYEKLRWQPKDCKTKDFTSSNYLRRMQGKTLAFIGDSLGRQQFQSLMCMVSGGEERPDVIDVGNEFGLVKPHGHGRPDGWAYRFLSTNSTILYYWSATLCDLEPLDINNPTTEVAMHLDRPPAFLQHFISKFDVVVLNTGHHWNRGKLNNNRWVMHIGGKRNTNRKLADIGSAKNFTVYSTVHWLNSELPKFPGLKAFYRSISPRHFFNGEWNTGGTCDNTSPRSGELEVLQDESADLLAAGSVKGTQVKLLDITALSQLRDEGHISRYSIKATPGVQDCLHWCLPGVPDTWNELLFAQI 528
MKGG+ +R+KQ+SL L+A+ CT++LI+G ++ + +S I P +V L P+L Q+ DG +D PD + EA+ ++ E+ D + S + + E D T + +SE +E + E + ++ + E+ +F +T +S + +++T K E Q C Y KGKW+TD++RPLYSGF CK WLS MWACRLTQRTDFAYEKLRWQPKDC +DF +L RM+ KTLAFIGDSLGRQQFQS+MCM++GGE+RPDV DVG +FGLVK G RPDGWAY F TN+T+LYYWSA+LCDL P+D +NP TEVAMHLDRPPAFLQ F+ + DV+V NTGHHWNRGKLN NRWVM++GG+ NTNR++ADI AKNFT++S V W++S+LPK+PGLKAF R+ISPRHFFNG+WNTGG+CDNT+P S EVLQDES+D AA +VKGT+VKLLDITA+SQLRDEGHISRYSIKATPGVQDCLHWCLPGVPDTWNELLFAQI
Sbjct: 5 MKGGFQRIRSKQISLVLIALVCTTVLIWGCERASLLSSFILPDEQVSRLSRDALTDDSDPRPILPKDSKQV------TDGEEIEIDKNIPDEQEQQNH------PEADLQDTEKIPVDDNDTSGKSSVAVEEDIITTGDEISSEG-NAEEAKPQTPEEGNTDDVDRNPENTNPTTDFETT-LSNQVYNKSVVTPK-EKQACKYGKGKWVTDESRPLYSGFKCKSWLSEMWACRLTQRTDFAYEKLRWQPKDCDMEDFQGDKFLARMRHKTLAFIGDSLGRQQFQSMMCMITGGEDRPDVEDVGKQFGLVKARGSIRPDGWAYWFPGTNTTVLYYWSASLCDLTPIDPSNPKTEVAMHLDRPPAFLQRFLHRIDVLVFNTGHHWNRGKLNANRWVMYVGGRPNTNRRIADIAGAKNFTIHSIVRWVDSQLPKYPGLKAFLRTISPRHFFNGDWNTGGSCDNTTPMSEGKEVLQDESSDSTAARAVKGTRVKLLDITAISQLRDEGHISRYSIKATPGVQDCLHWCLPGVPDTWNELLFAQI 529
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6ZRH2 | E-Value: 0.000e+0, PID: 58.30 | PMR5N domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A5J5AYA4 | E-Value: 0.000e+0, PID: 56.86 | PMR5N domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A2R6QUM9 | E-Value: 0.000e+0, PID: 58.90 | (Protein trichome birefringence-like {ECO:0000313|... [more] |
| A0A7J6UUM8 | E-Value: 0.000e+0, PID: 54.66 | (Trichome birefringence-like {ECO:0000313|EMBL:KAF... [more] |
| A0A1S4CP87 | E-Value: 0.000e+0, PID: 57.30 | (protein trichome birefringence-like 14 {ECO:00003... [more] |
| A0A2G5C8M2 | E-Value: 0.000e+0, PID: 53.79 | PMR5N domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A1U8B3H6 | E-Value: 0.000e+0, PID: 56.27 | (protein trichome birefringence-like 14 isoform X1... [more] |
| A0A1U7VZ23 | E-Value: 0.000e+0, PID: 57.12 | (protein trichome birefringence-like 14 {ECO:00003... [more] |
| V4WH88 | E-Value: 0.000e+0, PID: 57.14 | PMR5N domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A7N0UVP0 | E-Value: 0.000e+0, PID: 57.04 | PMR5N domain-containing protein {ECO:0000259|Pfam:... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |