Resource Type:
Polypeptide
Name:
XM_017387980.1
Identifier:
XM_017387980.1-protein
Sequence:
MTGESNGKLTVKEMIPEIKFTKLFINGLFVQSLSGKTFETIDPRTEEVIA
EVSEGSKEDVDLAVKAARDAFDNGPWPRFSGAQRRRIMMKLADLIDENTE
ELAALDTIDAGKLYHLGKAIDIPGAAETFRYYAGAADKIHGDTLKMSTDY
QAYTLLEPVGVVGHIIPWNFPTQMFAMKVAPALAAGCTMIVKPAEQTPLS
ALFYAHLAKLAGVPDGVVNVVNGYGPVAGAALTSHMDVDKVCFTGSTSVG
RLVMQAAALSNLKQVTLELGGKSPIIIFDDAELDKAVHLALIGNLYNKGE
VCAASSRVFVQEGIYEQFLKKLQEKTKSWVVGDPFDPNSQQGPQIEKKQY
DKILSYIEHGKREGAILLTGGKPLGEKGYYIEPTIFTDVKDDMIIAKDEI
FGPVISILKFKTMDEVIRRANATTYGLVAGVITNNLNIANTVSRSIRAGT
IWINCYFIFDKDTPFGGYKMSGYGRDMGMDGLAKYLHVKTVATPIYNTPW
L
Sequence Length:
501
Sequence Checksum:
0893e4cde969391c64f8d533e3e57f26
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017387980.1, derives from mRNA, XM_017387980.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017387980.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017387980.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R4F0 ((Aldehyde dehydrogenase family 2 member like {ECO:0000313|EMBL:PSS20880.1}))
HSP 1 Score: 815.839 bits (2106), Expect = 0.000e+0
Identity = 377/501 (75.25%), Postives = 438/501 (87.43%), Query Frame = 0
Match: A0A2R6R4F0 ((Aldehyde dehydrogenase family 2 member like {ECO:0000313|EMBL:PSS20880.1}))
HSP 1 Score: 815.839 bits (2106), Expect = 0.000e+0
Identity = 377/501 (75.25%), Postives = 438/501 (87.43%), Query Frame = 0
Query: 1 MTGESNGKLTVKEMIPEIKFTKLFINGLFVQSLSGKTFETIDPRTEEVIAEVSEGSKEDVDLAVKAARDAFDNGPWPRFSGAQRRRIMMKLADLIDENTEELAALDTIDAGKLYHLGKAIDIPGAAETFRYYAGAADKIHGDTLKMSTDYQAYTLLEPVGVVGHIIPWNFPTQMFAMKVAPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGVPDGVVNVVNGYGPVAGAALTSHMDVDKVCFTGSTSVGRLVMQAAALSNLKQVTLELGGKSPIIIFDDAELDKAVHLALIGNLYNKGEVCAASSRVFVQEGIYEQFLKKLQEKTKSWVVGDPFDPNSQQGPQIEKKQYDKILSYIEHGKREGAILLTGGKPLGEKGYYIEPTIFTDVKDDMIIAKDEIFGPVISILKFKTMDEVIRRANATTYGLVAGVITNNLNIANTVSRSIRAGTIWINCYFIFDKDTPFGGYKMSGYGRDMGMDGLAKYLHVKTVATPIYNTPWL 501
M ESNG L IPEIKFTKLFING FV S+SGKTFETIDPRT EVIA+++EG KEDVDLAVKAAR+AFD GPWPR G+ R +IMMK A+LIDEN EELA LD IDAGKL+ GK +DIP AAET RY+AGAA KIHG+TLKMS+++Q YTL EP+GVVGHIIPWNFP+ MF MKV+PALAAGCTM+VKPAEQTPLSAL+YAHLAKLAG+P+GV+NV+ G+GP AGAA++SHMD+DKV FTGST VGRLVMQAAA+SNLK V+LELGGKSP+IIFDDA +DKA LAL+G L+NKGE+C A SRVFVQEGIY++F+KKL EK K+WVVGDPFDP +QGPQ++KKQ+D+ILSYIEHGKREGA LLTGGKP G KGYYIEPTIFTDVKDDM+IAK+EIFGPV+S++KFKT++E I+RANAT YGL AG++TNNLNIANTVSRSIRAG IWINCYF FD D P+GGYK SG+GRD+G GL +YL VK V TP+Y++PWL
Sbjct: 1 MGAESNGSLKCLSEIPEIKFTKLFINGKFVDSISGKTFETIDPRTGEVIAKIAEGDKEDVDLAVKAAREAFDCGPWPRLPGSARGKIMMKFAELIDENAEELATLDCIDAGKLFDWGKKVDIPSAAETLRYFAGAAGKIHGETLKMSSEHQGYTLREPIGVVGHIIPWNFPSTMFLMKVSPALAAGCTMVVKPAEQTPLSALYYAHLAKLAGIPNGVINVITGFGPTAGAAISSHMDIDKVSFTGSTEVGRLVMQAAAMSNLKPVSLELGGKSPLIIFDDANIDKATDLALLGILFNKGEICVAGSRVFVQEGIYDEFVKKLTEKAKTWVVGDPFDPKVRQGPQVDKKQFDRILSYIEHGKREGATLLTGGKPCGHKGYYIEPTIFTDVKDDMVIAKEEIFGPVMSLMKFKTVEEAIKRANATKYGLAAGIVTNNLNIANTVSRSIRAGVIWINCYFAFDNDCPYGGYKSSGFGRDLGKQGLDQYLQVKAVVTPVYDSPWL 501
BLAST of XM_017387980.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A288W8F8 ((ALDH12 {ECO:0000313|EMBL:ARU08110.1}))
HSP 1 Score: 813.527 bits (2100), Expect = 0.000e+0
Identity = 379/496 (76.41%), Postives = 434/496 (87.50%), Query Frame = 0
Match: A0A288W8F8 ((ALDH12 {ECO:0000313|EMBL:ARU08110.1}))
HSP 1 Score: 813.527 bits (2100), Expect = 0.000e+0
Identity = 379/496 (76.41%), Postives = 434/496 (87.50%), Query Frame = 0
Query: 6 NGKLTVKEMIPEIKFTKLFINGLFVQSLSGKTFETIDPRTEEVIAEVSEGSKEDVDLAVKAARDAFDNGPWPRFSGAQRRRIMMKLADLIDENTEELAALDTIDAGKLYHLGKAIDIPGAAETFRYYAGAADKIHGDTLKMSTDYQAYTLLEPVGVVGHIIPWNFPTQMFAMKVAPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGVPDGVVNVVNGYGPVAGAALTSHMDVDKVCFTGSTSVGRLVMQAAALSNLKQVTLELGGKSPIIIFDDAELDKAVHLALIGNLYNKGEVCAASSRVFVQEGIYEQFLKKLQEKTKSWVVGDPFDPNSQQGPQIEKKQYDKILSYIEHGKREGAILLTGGKPLGEKGYYIEPTIFTDVKDDMIIAKDEIFGPVISILKFKTMDEVIRRANATTYGLVAGVITNNLNIANTVSRSIRAGTIWINCYFIFDKDTPFGGYKMSGYGRDMGMDGLAKYLHVKTVATPIYNTPWL 501
NG +P+IKFTKLFING FV S+SGKTFETIDPR EVIAE++EG KEDVDLAVKAAR+AFD+GPWPR G++RR+IMMK ADLIDENT+ELA LD IDAGKL++L K +DIPGAAET RYYAGAADKIHG+TLKMST Q YTL EP+GVVGHIIPWNFP+QMFAMKV PALAAGCTM+VKPAEQTPLSAL+YAHLAKLAG+PDGV+NVV G+G AGAA++SHMD+D V FTGST VGRLVMQAAA SNLK V LELGGKSPI+IFDDA++DK LAL G L+NKGE+C A SR+FVQEGIY++FL KL++K K+WVVGDPFDP S QGPQ++KKQYD+ILSYIEHGK+EGA L GGKP KGYYIEPTIFTDV D+M IAK+EIFGPV+S+ KFKT++E I+RANAT YGL AGV+TNN+NIANTV+RSIRAG IWINCYF FD+D+P+GGYKMSG+GRDMGMDGL KYL VK VATPIYN+PWL
Sbjct: 8 NGSSDSHVKVPQIKFTKLFINGEFVDSVSGKTFETIDPRNGEVIAEIAEGGKEDVDLAVKAAREAFDHGPWPRLPGSERRKIMMKFADLIDENTQELATLDAIDAGKLFYLCKIMDIPGAAETIRYYAGAADKIHGETLKMSTALQGYTLHEPIGVVGHIIPWNFPSQMFAMKVGPALAAGCTMVVKPAEQTPLSALYYAHLAKLAGIPDGVLNVVTGFGQTAGAAISSHMDIDMVSFTGSTEVGRLVMQAAATSNLKPVCLELGGKSPILIFDDADVDKVTELALQGTLFNKGEICVAGSRIFVQEGIYDKFLIKLKQKVKNWVVGDPFDPTSHQGPQVDKKQYDRILSYIEHGKKEGATLFHGGKPCDGKGYYIEPTIFTDVTDEMTIAKEEIFGPVMSVFKFKTVEEAIKRANATKYGLAAGVMTNNINIANTVARSIRAGAIWINCYFAFDRDSPYGGYKMSGFGRDMGMDGLKKYLAVKAVATPIYNSPWL 503
BLAST of XM_017387980.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6T3A2 ((aldehyde dehydrogenase family 2 member C4-like {ECO:0000313|RefSeq:XP_027072789.1}))
HSP 1 Score: 809.675 bits (2090), Expect = 0.000e+0
Identity = 382/505 (75.64%), Postives = 436/505 (86.34%), Query Frame = 0
Match: A0A6P6T3A2 ((aldehyde dehydrogenase family 2 member C4-like {ECO:0000313|RefSeq:XP_027072789.1}))
HSP 1 Score: 809.675 bits (2090), Expect = 0.000e+0
Identity = 382/505 (75.64%), Postives = 436/505 (86.34%), Query Frame = 0
Query: 1 MTGESNGKLT----VKEMIPEIKFTKLFINGLFVQSLSGKTFETIDPRTEEVIAEVSEGSKEDVDLAVKAARDAFDNGPWPRFSGAQRRRIMMKLADLIDENTEELAALDTIDAGKLYHLGKAIDIPGAAETFRYYAGAADKIHGDTLKMSTDYQAYTLLEPVGVVGHIIPWNFPTQMFAMKVAPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGVPDGVVNVVNGYGPVAGAALTSHMDVDKVCFTGSTSVGRLVMQAAALSNLKQVTLELGGKSPIIIFDDAELDKAVHLALIGNLYNKGEVCAASSRVFVQEGIYEQFLKKLQEKTKSWVVGDPFDPNSQQGPQIEKKQYDKILSYIEHGKREGAILLTGGKPLGEKGYYIEPTIFTDVKDDMIIAKDEIFGPVISILKFKTMDEVIRRANATTYGLVAGVITNNLNIANTVSRSIRAGTIWINCYFIFDKDTPFGGYKMSGYGRDMGMDGLAKYLHVKTVATPIYNTPWL 501
M +SNG + VK +P+IKFTKLFING FV S+SGKTF+TIDPR EVIAE++EG KEDVDLAVKAAR+AFDNGPWPR G +RR+IMMK ADLIDEN EELA L+TIDAGKL+ L K ++IPGAAET RYYAGAADKIHG+TLKMST Q YTL EP+GVVGHIIPWNFP+QMFAMKV PALAAGCTM+VKPAEQTPLSAL+YAHLAKLAG+PDGV+NVV G+G AGAA++SH D+D V FTGST VGRLVMQAAA SNLK V LELGGKSPI+IFDDA++DK LAL G L+NKGE+C A SRVFVQEGIY++FL KL+EK K+WVVGDPFDP S QGPQ+ KKQYD+ILSYIEHGK+EGA L GGKP KGYYIEPTIFTDV D+M IA++EIFGPV+S+ KFKT++E I+RANAT YGL AGV+TNN+NIANTV+RSIRAG IWINCYF FD+D+P+GGYKMSG+GRDMGMDGL KYL VK VATPIYN+PWL
Sbjct: 1 MAVQSNGNGSLDSHVKVPVPQIKFTKLFINGEFVDSVSGKTFQTIDPRNREVIAEIAEGGKEDVDLAVKAAREAFDNGPWPRLPGFERRKIMMKFADLIDENNEELATLETIDAGKLFFLCKIMEIPGAAETIRYYAGAADKIHGETLKMSTALQGYTLHEPIGVVGHIIPWNFPSQMFAMKVGPALAAGCTMVVKPAEQTPLSALYYAHLAKLAGIPDGVLNVVTGFGQTAGAAISSHTDIDMVSFTGSTEVGRLVMQAAATSNLKPVCLELGGKSPILIFDDADVDKVTELALQGTLFNKGEICVAGSRVFVQEGIYDKFLLKLKEKVKNWVVGDPFDPTSHQGPQVNKKQYDRILSYIEHGKKEGATLFHGGKPCDRKGYYIEPTIFTDVTDEMKIAQEEIFGPVMSVFKFKTVEEAIKRANATKYGLAAGVMTNNINIANTVARSIRAGAIWINCYFAFDRDSPYGGYKMSGFGRDMGMDGLKKYLVVKAVATPIYNSPWL 505
BLAST of XM_017387980.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9H1G5 ((Aldehyde dehydrogenase {ECO:0000313|EMBL:PIN11345.1}) (1.2.1.5 {ECO:0000313|EMBL:PIN11345.1}))
HSP 1 Score: 806.209 bits (2081), Expect = 0.000e+0
Identity = 382/501 (76.25%), Postives = 434/501 (86.63%), Query Frame = 0
Match: A0A2G9H1G5 ((Aldehyde dehydrogenase {ECO:0000313|EMBL:PIN11345.1}) (1.2.1.5 {ECO:0000313|EMBL:PIN11345.1}))
HSP 1 Score: 806.209 bits (2081), Expect = 0.000e+0
Identity = 382/501 (76.25%), Postives = 434/501 (86.63%), Query Frame = 0
Query: 1 MTGESNGKLTVKEMIPEIKFTKLFINGLFVQSLSGKTFETIDPRTEEVIAEVSEGSKEDVDLAVKAARDAFDNGPWPRFSGAQRRRIMMKLADLIDENTEELAALDTIDAGKLYHLGKAIDIPGAAETFRYYAGAADKIHGDTLKMSTDYQAYTLLEPVGVVGHIIPWNFPTQMFAMKVAPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGVPDGVVNVVNGYGPVAGAALTSHMDVDKVCFTGSTSVGRLVMQAAALSNLKQVTLELGGKSPIIIFDDAELDKAVHLALIGNLYNKGEVCAASSRVFVQEGIYEQFLKKLQEKTKSWVVGDPFDPNSQQGPQIEKKQYDKILSYIEHGKREGAILLTGGKPLGEKGYYIEPTIFTDVKDDMIIAKDEIFGPVISILKFKTMDEVIRRANATTYGLVAGVITNNLNIANTVSRSIRAGTIWINCYFIFDKDTPFGGYKMSGYGRDMGMDGLAKYLHVKTVATPIYNTPWL 501
MT E NG + +P+IKFTKLFING FV S+SG TFETIDPRTEEVIA ++EG KEDVDLAV+AAR+AFD+GPWPR G +RRRIM+K ADLIDEN EELAALDT+DAGKL+ LGK +++P AAET RYYAGAADKIHG TLKMS + Q YTL EP+GVVGHIIPWNFP+QMFAMKV PALAAGCT++VKPAEQTPLSAL+YAHLAKLAG+P+GV+NVV GYG AGAA++SHMD+DKV FTGST VGRL+MQAAA SNLK VTLELGGKSPIIIF+DA++DK LAL G L+NKGE+C A SRVFVQEGIY++FL KL EK KSWVVGDPFDPN QGPQ +KKQYDKILS+IE GK+EGA LLTGGK KGYYIEPTIFTDV DDM IAK+EIFGPV+S+LKFKT++EVI+RANAT YGL AGV+TN+LNIANTVSRSIRAG IWINCYF FDKD P+GGYKMSG+GRD GM+ L YL VK+VA PIYN+PWL
Sbjct: 1 MTVE-NGSEKPQISVPKIKFTKLFINGQFVDSISGNTFETIDPRTEEVIANIAEGDKEDVDLAVRAAREAFDSGPWPRLPGCERRRIMLKFADLIDENVEELAALDTLDAGKLHILGKTLEVPSAAETIRYYAGAADKIHGSTLKMSRELQGYTLREPIGVVGHIIPWNFPSQMFAMKVGPALAAGCTVVVKPAEQTPLSALYYAHLAKLAGIPNGVLNVVTGYGHTAGAAISSHMDIDKVSFTGSTEVGRLIMQAAATSNLKPVTLELGGKSPIIIFNDADVDKVADLALQGTLFNKGEICVAGSRVFVQEGIYDKFLAKLSEKVKSWVVGDPFDPNVHQGPQADKKQYDKILSFIELGKKEGATLLTGGKACDMKGYYIEPTIFTDVADDMTIAKEEIFGPVMSVLKFKTVEEVIKRANATKYGLAAGVMTNDLNIANTVSRSIRAGVIWINCYFAFDKDLPYGGYKMSGFGRDSGMESLNSYLQVKSVAMPIYNSPWL 500
BLAST of XM_017387980.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DTC8 ((Aldehyde dehydrogenase 2C4 {ECO:0000313|EMBL:GFS41000.1}))
HSP 1 Score: 805.438 bits (2079), Expect = 0.000e+0
Identity = 373/497 (75.05%), Postives = 434/497 (87.32%), Query Frame = 0
Match: A0A7J0DTC8 ((Aldehyde dehydrogenase 2C4 {ECO:0000313|EMBL:GFS41000.1}))
HSP 1 Score: 805.438 bits (2079), Expect = 0.000e+0
Identity = 373/497 (75.05%), Postives = 434/497 (87.32%), Query Frame = 0
Query: 1 MTGESNGKLTVKEMIPEIKFTKLFINGLFVQSLSGKTFETIDPRTEEVIAEVSEGSKEDVDLAVKAARDAFDNGPWPRFSGAQRRRIMMKLADLIDENTEELAALDTIDAGKLYHLGKAIDIPGAAETFRYYAGAADKIHGDTLKMSTDYQAYTLLEPVGVVGHIIPWNFPTQMFAMKVAPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGVPDGVVNVVNGYGPVAGAALTSHMDVDKVCFTGSTSVGRLVMQAAALSNLKQVTLELGGKSPIIIFDDAELDKAVHLALIGNLYNKGEVCAASSRVFVQEGIYEQFLKKLQEKTKSWVVGDPFDPNSQQGPQIEKKQYDKILSYIEHGKREGAILLTGGKPLGEKGYYIEPTIFTDVKDDMIIAKDEIFGPVISILKFKTMDEVIRRANATTYGLVAGVITNNLNIANTVSRSIRAGTIWINCYFIFDKDTPFGGYKMSGYGRDMGMDGLAKYLHVKTVATPIYN 497
M ESNG L IPEIKFTKLFING FV S+SGKTFETIDPRT EVIA+++EG KEDVDLAVKAAR+AFD GPWPR G+ R +IMMK A+LIDEN EELA LD IDAGKL+ GK +DIPGAAET RY+AGAA KIHG+TLKMS+++Q YTL EP+GVVGHIIPWNFP+ MF MKV+PALAAGCTM+VKPAEQTPLSAL+YAHLAKLAG+P+GV+NV+ G+GP AGAA++SHMD+DKV FTGST VGRLVMQAAA+SNLK V+LELGGKSP+IIFDDA +DKA LAL+G L+NKGE+C A SRVFVQEGIY++F+KKL EK K+WVVGDPFDP +QGPQ++KKQ+D+IL+YIEHGKREGA LLTGGKP G KGYYIEPTIFTDVKDDM+IAK+EIFGPV+S++KFKT++E I+RANAT YGL AG++T+NLNIANTVSRSIRAG IWINCYF FD D PFGGYK SG+GRD+G GL +YL VK V TP ++
Sbjct: 1 MGAESNGSLKCLSEIPEIKFTKLFINGKFVDSISGKTFETIDPRTGEVIAKIAEGDKEDVDLAVKAAREAFDCGPWPRLPGSARGKIMMKFAELIDENAEELATLDCIDAGKLFDWGKKVDIPGAAETLRYFAGAAGKIHGETLKMSSEHQGYTLREPIGVVGHIIPWNFPSTMFLMKVSPALAAGCTMVVKPAEQTPLSALYYAHLAKLAGIPNGVINVITGFGPTAGAAISSHMDIDKVSFTGSTEVGRLVMQAAAMSNLKPVSLELGGKSPLIIFDDANIDKATDLALLGILFNKGEICVAGSRVFVQEGIYDEFVKKLTEKAKTWVVGDPFDPKVRQGPQVDKKQFDRILTYIEHGKREGATLLTGGKPCGHKGYYIEPTIFTDVKDDMVIAKEEIFGPVMSLMKFKTVEEAIKRANATKYGLAAGILTDNLNIANTVSRSIRAGVIWINCYFAFDNDCPFGGYKSSGFGRDLGKQGLDQYLQVKAVVTPTFD 497
BLAST of XM_017387980.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6SG73 ((aldehyde dehydrogenase family 2 member C4-like {ECO:0000313|RefSeq:XP_027065155.1}))
HSP 1 Score: 804.668 bits (2077), Expect = 0.000e+0
Identity = 381/505 (75.45%), Postives = 436/505 (86.34%), Query Frame = 0
Match: A0A6P6SG73 ((aldehyde dehydrogenase family 2 member C4-like {ECO:0000313|RefSeq:XP_027065155.1}))
HSP 1 Score: 804.668 bits (2077), Expect = 0.000e+0
Identity = 381/505 (75.45%), Postives = 436/505 (86.34%), Query Frame = 0
Query: 1 MTGESNGKLT----VKEMIPEIKFTKLFINGLFVQSLSGKTFETIDPRTEEVIAEVSEGSKEDVDLAVKAARDAFDNGPWPRFSGAQRRRIMMKLADLIDENTEELAALDTIDAGKLYHLGKAIDIPGAAETFRYYAGAADKIHGDTLKMSTDYQAYTLLEPVGVVGHIIPWNFPTQMFAMKVAPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGVPDGVVNVVNGYGPVAGAALTSHMDVDKVCFTGSTSVGRLVMQAAALSNLKQVTLELGGKSPIIIFDDAELDKAVHLALIGNLYNKGEVCAASSRVFVQEGIYEQFLKKLQEKTKSWVVGDPFDPNSQQGPQIEKKQYDKILSYIEHGKREGAILLTGGKPLGEKGYYIEPTIFTDVKDDMIIAKDEIFGPVISILKFKTMDEVIRRANATTYGLVAGVITNNLNIANTVSRSIRAGTIWINCYFIFDKDTPFGGYKMSGYGRDMGMDGLAKYLHVKTVATPIYNTPWL 501
M +SNG + VK +P+IKFTKLFING FV S+SGKTF+TIDPR EVIAE++EG+KEDVDLAVKAAR+AFDNGPWPR G +RR+IMMK ADLIDEN EELA L+TIDAGKL+ L K ++IPGAAET RYYAGAADKIHG+TLKMST Q YTL EPVGVVGHIIPWNFP+QMFAMKV PALAAGCTM+VKPAEQTPLSAL+YAHLAKLAG+PDGV+NVV G+G AGAA++SH D+D V FTGST VGRLVMQAAA SNLK V LELGGKSPI+IFDDA++DK LAL G L+NKGE+C A SRVFVQEGIY++FL KL+EK K+WVVGDPFDP S QGPQ+ KKQYD+ILSYIE GK+EGA L GGKP KGYYIEPTIFTDV D+M IA++EIFGPV+S+ KFKT++E I+RANAT YGL AGV+TN++NIANTV+RSIRAG IWINCYF FD+D+P+GGYKMSG+GRDMGMDGL KYL VK VATPIYN+PWL
Sbjct: 1 MAVQSNGNGSLDSRVKVPVPQIKFTKLFINGEFVDSVSGKTFQTIDPRNREVIAEIAEGNKEDVDLAVKAAREAFDNGPWPRLPGFERRKIMMKFADLIDENNEELATLETIDAGKLFSLCKIMEIPGAAETIRYYAGAADKIHGETLKMSTALQGYTLHEPVGVVGHIIPWNFPSQMFAMKVGPALAAGCTMVVKPAEQTPLSALYYAHLAKLAGIPDGVLNVVTGFGQTAGAAISSHTDIDMVSFTGSTEVGRLVMQAAATSNLKPVCLELGGKSPILIFDDADVDKVTELALQGTLFNKGEICVAGSRVFVQEGIYDKFLLKLKEKVKNWVVGDPFDPTSHQGPQVNKKQYDRILSYIELGKKEGATLFHGGKPGDRKGYYIEPTIFTDVTDEMTIAQEEIFGPVMSVFKFKTVEEAIKRANATKYGLAAGVMTNDINIANTVARSIRAGAIWINCYFAFDRDSPYGGYKMSGFGRDMGMDGLKKYLVVKAVATPIYNSPWL 505
BLAST of XM_017387980.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068U6V3 (Aldedh domain-containing protein {ECO:0000259|Pfam:PF00171})
HSP 1 Score: 803.897 bits (2075), Expect = 0.000e+0
Identity = 381/505 (75.45%), Postives = 436/505 (86.34%), Query Frame = 0
Match: A0A068U6V3 (Aldedh domain-containing protein {ECO:0000259|Pfam:PF00171})
HSP 1 Score: 803.897 bits (2075), Expect = 0.000e+0
Identity = 381/505 (75.45%), Postives = 436/505 (86.34%), Query Frame = 0
Query: 1 MTGESNGKLT----VKEMIPEIKFTKLFINGLFVQSLSGKTFETIDPRTEEVIAEVSEGSKEDVDLAVKAARDAFDNGPWPRFSGAQRRRIMMKLADLIDENTEELAALDTIDAGKLYHLGKAIDIPGAAETFRYYAGAADKIHGDTLKMSTDYQAYTLLEPVGVVGHIIPWNFPTQMFAMKVAPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGVPDGVVNVVNGYGPVAGAALTSHMDVDKVCFTGSTSVGRLVMQAAALSNLKQVTLELGGKSPIIIFDDAELDKAVHLALIGNLYNKGEVCAASSRVFVQEGIYEQFLKKLQEKTKSWVVGDPFDPNSQQGPQIEKKQYDKILSYIEHGKREGAILLTGGKPLGEKGYYIEPTIFTDVKDDMIIAKDEIFGPVISILKFKTMDEVIRRANATTYGLVAGVITNNLNIANTVSRSIRAGTIWINCYFIFDKDTPFGGYKMSGYGRDMGMDGLAKYLHVKTVATPIYNTPWL 501
M +SNG + VK +P+IKFTKLFING FV S+SGKTF+TIDPR EVIAE++EG+KEDVDLAVKAAR+AFDNGPWPR G +RR+IMMK ADLIDEN EELA L+TIDAGKL+ L K ++IPGAAET RYYAGAADKIHG+TLKMST Q YTL EPVGVVGHIIPWNFP+QMFAMKV PALAAGCTM+VKPAEQTPLSAL+YAHLAKLAG+PDGV+NVV G+G AGAA++SH D+D V FTGST VGRLVMQAAA SNLK V LELGGKSPI+IFDDA++DK LAL G L+NKGE+C A SRVFVQEGIY++FL KL+EK K+WVVGDPFDP S QGPQ+ KKQYD+ILSYIE GK+EGA L GGKP KGYYIEPTIFTDV D+M IA++EIFGPV+S+ KFKT++E I+RANAT YGL AGV+TN++NIANTV+RSIRAG IWINCYF FD+D+P+GGYKMSG+GRDMGMDGL KYL VK VATPIYN+PWL
Sbjct: 1 MAVQSNGNGSLDSRVKVPVPQIKFTKLFINGEFVDSVSGKTFQTIDPRNREVIAEIAEGNKEDVDLAVKAAREAFDNGPWPRLPGFERRKIMMKFADLIDENNEELATLETIDAGKLFFLCKIMEIPGAAETIRYYAGAADKIHGETLKMSTALQGYTLHEPVGVVGHIIPWNFPSQMFAMKVGPALAAGCTMVVKPAEQTPLSALYYAHLAKLAGIPDGVLNVVTGFGQTAGAAISSHTDIDMVSFTGSTEVGRLVMQAAATSNLKPVCLELGGKSPILIFDDADVDKVTELALQGTLFNKGEICVAGSRVFVQEGIYDKFLLKLKEKVKNWVVGDPFDPTSHQGPQVNKKQYDRILSYIELGKKEGATLFHGGKPGDRKGYYIEPTIFTDVTDEMTIAQEEIFGPVMSVFKFKTVEEAIKRANATKYGLAAGVMTNDINIANTVARSIRAGAIWINCYFAFDRDSPYGGYKMSGFGRDMGMDGLKKYLVVKAVATPIYNSPWL 505
BLAST of XM_017387980.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AC89 ((Putative aldehyde dehydrogenase family 2 member C4 {ECO:0000313|EMBL:MPA53508.1}) (1.2.1.68 {ECO:0000313|EMBL:MPA53508.1}))
HSP 1 Score: 803.512 bits (2074), Expect = 0.000e+0
Identity = 377/501 (75.25%), Postives = 434/501 (86.63%), Query Frame = 0
Match: A0A5B7AC89 ((Putative aldehyde dehydrogenase family 2 member C4 {ECO:0000313|EMBL:MPA53508.1}) (1.2.1.68 {ECO:0000313|EMBL:MPA53508.1}))
HSP 1 Score: 803.512 bits (2074), Expect = 0.000e+0
Identity = 377/501 (75.25%), Postives = 434/501 (86.63%), Query Frame = 0
Query: 1 MTGESNGKLTVKEMIPEIKFTKLFINGLFVQSLSGKTFETIDPRTEEVIAEVSEGSKEDVDLAVKAARDAFDNGPWPRFSGAQRRRIMMKLADLIDENTEELAALDTIDAGKLYHLGKAIDIPGAAETFRYYAGAADKIHGDTLKMSTDYQAYTLLEPVGVVGHIIPWNFPTQMFAMKVAPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGVPDGVVNVVNGYGPVAGAALTSHMDVDKVCFTGSTSVGRLVMQAAALSNLKQVTLELGGKSPIIIFDDAELDKAVHLALIGNLYNKGEVCAASSRVFVQEGIYEQFLKKLQEKTKSWVVGDPFDPNSQQGPQIEKKQYDKILSYIEHGKREGAILLTGGKPLGEKGYYIEPTIFTDVKDDMIIAKDEIFGPVISILKFKTMDEVIRRANATTYGLVAGVITNNLNIANTVSRSIRAGTIWINCYFIFDKDTPFGGYKMSGYGRDMGMDGLAKYLHVKTVATPIYNTPWL 501
M +SNG IP+IKFTKLFING FV S+SGKTFETIDPRT + IA V+EG KEDVDLAV+AAR+AFD+GPWPR SG R RIMMK ADLIDEN EELAALDTIDAGKL+ GKA+DIP AA RYYAGAADKIHG TLKMS++ QAYTL EP+GVVGHIIPWNFP+ MF MKV+PALAAGCTM+VKPAEQTPLSAL+ AHLAKLAG+PDGV+NV+ GYG AGAA++SHMD+D V FTGST VGR+VMQAAA SNLK V+LELGGKSP+IIFDDA+++KA LAL+G YNKGE+CAASSRVFVQEGIY+ F+K L EK K+WVVGDPFDP QGPQ +KKQ++KILSYIEHGKREGA LL+GGK GEKGYYI+PTIFTDV D+M+IAKDEIFGPV+S++KFKT+DEVI+RAN T YGL AG++TN+LN+ANTVSRSIRAG IWINCYF FDKD P+GGYKMSG+GRD+G++ L KYL VK+V TPIYN+PWL
Sbjct: 1 MAVQSNGSSEYLNKIPQIKFTKLFINGEFVDSISGKTFETIDPRTGDAIARVAEGDKEDVDLAVEAARNAFDHGPWPRLSGTARGRIMMKFADLIDENVEELAALDTIDAGKLFSWGKAMDIPLAAAILRYYAGAADKIHGATLKMSSELQAYTLREPIGVVGHIIPWNFPSSMFFMKVSPALAAGCTMVVKPAEQTPLSALYNAHLAKLAGIPDGVINVITGYGSTAGAAISSHMDIDMVSFTGSTEVGRIVMQAAATSNLKTVSLELGGKSPLIIFDDADVNKAADLALLGIRYNKGEICAASSRVFVQEGIYDVFVKLLAEKAKTWVVGDPFDPTVHQGPQTDKKQFEKILSYIEHGKREGATLLSGGKACGEKGYYIKPTIFTDVMDNMLIAKDEIFGPVMSLMKFKTIDEVIKRANGTRYGLAAGIVTNDLNVANTVSRSIRAGVIWINCYFAFDKDCPYGGYKMSGFGRDLGLEALDKYLQVKSVVTPIYNSPWL 501
BLAST of XM_017387980.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7HYY2 (Aldedh domain-containing protein {ECO:0000259|Pfam:PF00171})
HSP 1 Score: 802.357 bits (2071), Expect = 0.000e+0
Identity = 375/504 (74.40%), Postives = 436/504 (86.51%), Query Frame = 0
Match: A0A5C7HYY2 (Aldedh domain-containing protein {ECO:0000259|Pfam:PF00171})
HSP 1 Score: 802.357 bits (2071), Expect = 0.000e+0
Identity = 375/504 (74.40%), Postives = 436/504 (86.51%), Query Frame = 0
Query: 1 MTGESNGKLT---VKEMIPEIKFTKLFINGLFVQSLSGKTFETIDPRTEEVIAEVSEGSKEDVDLAVKAARDAFDNGPWPRFSGAQRRRIMMKLADLIDENTEELAALDTIDAGKLYHLGKAIDIPGAAETFRYYAGAADKIHGDTLKMSTDYQAYTLLEPVGVVGHIIPWNFPTQMFAMKVAPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGVPDGVVNVVNGYGPVAGAALTSHMDVDKVCFTGSTSVGRLVMQAAALSNLKQVTLELGGKSPIIIFDDAELDKAVHLALIGNLYNKGEVCAASSRVFVQEGIYEQFLKKLQEKTKSWVVGDPFDPNSQQGPQIEKKQYDKILSYIEHGKREGAILLTGGKPLGEKGYYIEPTIFTDVKDDMIIAKDEIFGPVISILKFKTMDEVIRRANATTYGLVAGVITNNLNIANTVSRSIRAGTIWINCYFIFDKDTPFGGYKMSGYGRDMGMDGLAKYLHVKTVATPIYNTPWL 501
M SNG +K +P IKFT+LFING FV SLSGKTFETIDPRT E+IA V+EG KEDVDLAVKAAR AFD+GPWPR SG +R RIMMK ADLIDE+ EELAALDTI+AGKL+ GKA+DIP AA FRYYAGAADKIHG+ LKMS + YTL EP+GVVGHIIPWNFP+ MF+MKVAP+LA GCTM++KPAEQTPLSAL+YAHLAKLAG+PDGV+NVV G+GP AGAA+ SHMD+DKV FTGST VGR+VMQAAA SNLK V+LELGGKSP+IIFDDA++DKA LA+IG LYNKGE+C ASSRV+VQEGIY++ ++KL EK K+W VGDPFDP +QGPQ++KKQ++KILSYIEHGKREGA LLTGGKP G+KGYYIEPTIF DVK+DM+IAKDEIFGPV+S++KFKTM+E I+ AN T YGL AG++T NL++ANTVSRSIRAGTIWINCYF FDKD P+GGYKMSG+GRDMGM+ L KYL VK++ TPIYN+PWL
Sbjct: 1 MANPSNGNSEAGLIKLKLPTIKFTQLFINGQFVDSLSGKTFETIDPRTGELIARVAEGDKEDVDLAVKAARHAFDDGPWPRLSGFERGRIMMKFADLIDEHVEELAALDTINAGKLFSSGKAVDIPHAAHDFRYYAGAADKIHGEVLKMSRELHGYTLREPIGVVGHIIPWNFPSSMFSMKVAPSLAVGCTMVLKPAEQTPLSALYYAHLAKLAGIPDGVLNVVTGFGPTAGAAVASHMDIDKVSFTGSTEVGRVVMQAAATSNLKAVSLELGGKSPLIIFDDADIDKAAELAIIGILYNKGEICVASSRVYVQEGIYDELVRKLVEKAKAWKVGDPFDPTVRQGPQVDKKQFEKILSYIEHGKREGASLLTGGKPSGDKGYYIEPTIFADVKEDMLIAKDEIFGPVMSLMKFKTMEEAIKCANNTRYGLAAGIVTKNLDVANTVSRSIRAGTIWINCYFAFDKDCPYGGYKMSGFGRDMGMEALHKYLQVKSIVTPIYNSPWL 504
BLAST of XM_017387980.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B5M1Y6 ((Alcohol dehydrogenase {ECO:0000313|EMBL:ACH63235.1}))
HSP 1 Score: 801.201 bits (2068), Expect = 0.000e+0
Identity = 376/498 (75.50%), Postives = 436/498 (87.55%), Query Frame = 0
Match: B5M1Y6 ((Alcohol dehydrogenase {ECO:0000313|EMBL:ACH63235.1}))
HSP 1 Score: 801.201 bits (2068), Expect = 0.000e+0
Identity = 376/498 (75.50%), Postives = 436/498 (87.55%), Query Frame = 0
Query: 4 ESNGKLTVKEMIPEIKFTKLFINGLFVQSLSGKTFETIDPRTEEVIAEVSEGSKEDVDLAVKAARDAFDNGPWPRFSGAQRRRIMMKLADLIDENTEELAALDTIDAGKLYHLGKAIDIPGAAETFRYYAGAADKIHGDTLKMSTDYQAYTLLEPVGVVGHIIPWNFPTQMFAMKVAPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGVPDGVVNVVNGYGPVAGAALTSHMDVDKVCFTGSTSVGRLVMQAAALSNLKQVTLELGGKSPIIIFDDAELDKAVHLALIGNLYNKGEVCAASSRVFVQEGIYEQFLKKLQEKTKSWVVGDPFDPNSQQGPQIEKKQYDKILSYIEHGKREGAILLTGGKPLGEKGYYIEPTIFTDVKDDMIIAKDEIFGPVISILKFKTMDEVIRRANATTYGLVAGVITNNLNIANTVSRSIRAGTIWINCYFIFDKDTPFGGYKMSGYGRDMGMDGLAKYLHVKTVATPIYNTPWL 501
ESNGK +K +PEIKFTKLFING FV S+SGKTFET DPR EVIAEV+EG KEDVDLAVKAAR+AFD+GPWPR SG QR RIMMKLADLI+++ EELAA+D++DAGKL+H+GK IDIPGAA T RYYAGAADKIHG+TLKMS ++Q YTL EP GVVGHIIPWNFPT MF KVAPALAAGCTM+VKPAEQTPLSAL+YAHLA LAG+P+GV+NVV+G+GP AGAALTSHMDVDKV FTGS VGRLVMQAAA SNLKQV+LELGGKSP+IIFDDA++DKA LAL+G L+NKGEVC ASSRVFVQ GIY+ ++KL E K+W VGDPFDP+ QQGPQ++K Q+D+ILSYIEHGKREGA LLTGG PLG+KGYYI+PTIF DV D+M+IAKDEIFGPV+S++KFKT++E I RANAT YGL AG++T +L+IANTV+RS++AGT+WINCYF FD D FGGYKMSG+G+D GM+ L KY VKTV TPIYN+PWL
Sbjct: 3 ESNGKTEIKFQLPEIKFTKLFINGEFVDSVSGKTFETRDPRNGEVIAEVAEGDKEDVDLAVKAAREAFDHGPWPRMSGYQRGRIMMKLADLIEQHLEELAAIDSMDAGKLFHIGKIIDIPGAAHTLRYYAGAADKIHGETLKMSREFQGYTLREPAGVVGHIIPWNFPTTMFFAKVAPALAAGCTMVVKPAEQTPLSALYYAHLANLAGIPEGVLNVVSGFGPTAGAALTSHMDVDKVSFTGSPEVGRLVMQAAATSNLKQVSLELGGKSPLIIFDDADVDKAAELALVGILFNKGEVCVASSRVFVQGGIYDAVVEKLVEMAKNWPVGDPFDPSVQQGPQVDKVQFDRILSYIEHGKREGATLLTGGNPLGDKGYYIQPTIFADVMDNMMIAKDEIFGPVLSLMKFKTIEEGIARANATRYGLAAGIVTKSLDIANTVARSVKAGTVWINCYFAFDNDAAFGGYKMSGFGKDNGMEALYKYTQVKTVVTPIYNSPWL 500
| Match Name | Stats | Description |
|---|---|---|
| A0A2R6R4F0 | E-Value: 0.000e+0, PID: 75.25 | (Aldehyde dehydrogenase family 2 member like {ECO:... [more] |
| A0A288W8F8 | E-Value: 0.000e+0, PID: 76.41 | (ALDH12 {ECO:0000313|EMBL:ARU08110.1})[more] |
| A0A6P6T3A2 | E-Value: 0.000e+0, PID: 75.64 | (aldehyde dehydrogenase family 2 member C4-like {E... [more] |
| A0A2G9H1G5 | E-Value: 0.000e+0, PID: 76.25 | (Aldehyde dehydrogenase {ECO:0000313|EMBL:PIN11345... [more] |
| A0A7J0DTC8 | E-Value: 0.000e+0, PID: 75.05 | (Aldehyde dehydrogenase 2C4 {ECO:0000313|EMBL:GFS4... [more] |
| A0A6P6SG73 | E-Value: 0.000e+0, PID: 75.45 | (aldehyde dehydrogenase family 2 member C4-like {E... [more] |
| A0A068U6V3 | E-Value: 0.000e+0, PID: 75.45 | Aldedh domain-containing protein {ECO:0000259|Pfam... [more] |
| A0A5B7AC89 | E-Value: 0.000e+0, PID: 75.25 | (Putative aldehyde dehydrogenase family 2 member C... [more] |
| A0A5C7HYY2 | E-Value: 0.000e+0, PID: 74.40 | Aldedh domain-containing protein {ECO:0000259|Pfam... [more] |
| B5M1Y6 | E-Value: 0.000e+0, PID: 75.50 | (Alcohol dehydrogenase {ECO:0000313|EMBL:ACH63235.... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |