Resource Type:
Polypeptide
Name:
XM_017387023.1
Identifier:
XM_017387023.1-protein
Sequence:
MPDQVPKASKKHWKNQEVKKPSFAPNGQASRKQSRKAKNPSRFPEATEKC
PALIPTSLICQNPACRATLSDDAFCKRCSCSICHSFDDNKDPSLWLECMS
ESGEGDSCGLSCHVECALQSRKAGVADIGQVVKLDGSYCCASCGKISGIL
GCWRKQLLIAKDARRVDVLYFRISMSYRLLDGTSRFKELHEIVASIKVKL
DTELGPAKGISTKMARYIVSRLSVASDVQALCSTAIEKADEWLAAASKAD
PSRREGSLPAACKVLFKEIESTSIVVLLIELPTSSLEDIKGYKLWYCKTR
EESHSEEPTCRILKSQKRVRISNLLPCTEYSFRVVSYTETGDMGHSEAKC
FTKSVEVIGKTPSSVGVNNIKESLQGVADTNVGTKHKTGAEVESNSGFQV
RDLGKVLQIASSQEQGCLNELSGERIENCPGVKEPNPQPVHDPLPRVSCE
LDLNVASVPDLNEELTPLVESKDEDNVIALGRVEPVGDEVSRDNQRNDVE
KSHGSGDSQNWSHRPNGDVSAVDSKGKMNKKRAATANEELHDCDSTLVNG
SPCGLHAASGSLGENFEYCVRIIRWLECQGHIKPEFRLKLLTWYSLRSSE
QERRVVDTFVQTLVDDPSSLAGQLLDSFSDVVSSKKRRNGFCSKLWH
Sequence Length:
647
Sequence Checksum:
92a14d3f3e4ec9319cf2d3a190237321
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017387023.1, derives from mRNA, XM_017387023.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017387023.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017387023.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZRW3 ((Putative VIN3-like protein 1 isoform X1 {ECO:0000313|EMBL:MPA45473.1}))
HSP 1 Score: 845.884 bits (2184), Expect = 0.000e+0
Identity = 418/653 (64.01%), Postives = 507/653 (77.64%), Query Frame = 0
Match: A0A5B6ZRW3 ((Putative VIN3-like protein 1 isoform X1 {ECO:0000313|EMBL:MPA45473.1}))
HSP 1 Score: 845.884 bits (2184), Expect = 0.000e+0
Identity = 418/653 (64.01%), Postives = 507/653 (77.64%), Query Frame = 0
Query: 1 MPDQVPKASKKHWKNQEVKKPSFAPNGQASRKQSRKAKNPSRFPEATEKCPALIPTSL-ICQNPACRATLS-DDAFCKRCSCSICHSFDDNKDPSLWLECMSESGEGDSCGLSCHVECALQSRKAGVADIGQVVKLDGSYCCASCGKISGILGCWRKQLLIAKDARRVDVLYFRISMSYRLLDGTSRFKELHEIVASIKVKLDTELGPAKGISTKMARYIVSRLSVASDVQALCSTAIEKADEWLAAASKADPSRREGSLPAACKVLFKEIESTSIVVLLIELPTSSLEDIKGYKLWYCKTREESHSEEPTCRILKSQKRVRISNLLPCTEYSFRVVSYTETGDMGHSEAKCFTKSVEVIGKTPSSVGVNNIKESLQGVADTNVGTKHKTGAEVESNSGFQVRDLGKVLQIASSQEQGCLNELSGERIENCPGVKEP-NPQPVH-DPLPRVSCELDLNVASVPDLNEELTPLVES-KDEDNVIALGR-VEPVGDEVSRDNQRNDVEKSHGSGDSQNWSHRPNGDVSAVDSKGKMNKKRAATANEELHDCDSTLVNGSPCGLHAASGSLGENFEYCVRIIRWLECQGHIKPEFRLKLLTWYSLRSSEQERRVVDTFVQTLVDDPSSLAGQLLDSFSDVVSSKKRRNGFCSKLWH 647
M +Q+PK SKK +KNQE +K S +P Q ++ RK +NP+R P ATE+ P ++L IC+N ACRA LS DD FCKRCSC ICH FDDNKDPSLWL C SESG GDSCGLSCH+ECALQ K GV D+GQ+++LDGSYCCASCGK+SGILGCW+KQL IAKDARRVDVL +RI +SYRL+DGTSRFKELHEIV K KL+TE+GP G+S KMAR IVSRLS+A DVQ LCS AIEKADEWLA S +P+ REGSL AAC+ LF+E+ S+S+V +LIEL T S +D+KGYK WYCK+R+E++ +EP C + Q+R+ ISNL PCTEYSFR++SYTE+GD+GHSEAKCFTKSVE+I K P+S +N+ KE +N T KT VES+S F+VRDLGK+L +A +QEQGC G I+ C GV E P+ + D LP VS LDLNV+SVPDLNEELTP ES +DE N LG+ VE D V D ++N + +SHGSGDSQNW+ P G+V AV S+ ++ +KRAA+ NEE HDCDSTL+NGSP + SG L ENFEYCV+IIRWLEC+GHIK EFRLKLLTW+SLRS+EQERRVV+TF+QTL+DDPSSLAGQL+DSFSD++SSK+ RNGFCSKLWH
Sbjct: 72 MTEQLPKTSKKTFKNQEPRKASLSPKDQPPSRKQRKGENPTRIPPATEQAPDFGHSNLWICKNSACRAVLSIDDTFCKRCSCCICHLFDDNKDPSLWLVCTSESGRGDSCGLSCHIECALQREKVGVVDLGQLMQLDGSYCCASCGKVSGILGCWKKQLSIAKDARRVDVLCYRIFLSYRLIDGTSRFKELHEIVRDAKAKLETEVGPVNGVSAKMARGIVSRLSIAGDVQKLCSLAIEKADEWLATISNVNPNCREGSLHAACRFLFEEVTSSSVVFVLIELFTGSADDVKGYKFWYCKSRDETYPKEPICVFPRDQRRILISNLQPCTEYSFRIISYTESGDLGHSEAKCFTKSVEIIHKNPNSTAMNHEKEIPHTEGCSNAKTLSKTTGAVESSSEFKVRDLGKILHLAWAQEQGCFKGFCGVDIKKCCGVSEGIKPETLEDDQLPSVSHGLDLNVSSVPDLNEELTPPFESPRDEGNGFTLGQAVEADDDTVFHDIEKNGLARSHGSGDSQNWTRGPTGEVLAVGSRVELCRKRAASTNEETHDCDSTLINGSPFQISNGSGCLDENFEYCVKIIRWLECEGHIKKEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISSKRPRNGFCSKLWH 724
BLAST of XM_017387023.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GZP4 (Fibronectin type-III domain-containing protein {ECO:0000259|PROSITE:PS50853})
HSP 1 Score: 837.025 bits (2161), Expect = 0.000e+0
Identity = 417/653 (63.86%), Postives = 504/653 (77.18%), Query Frame = 0
Match: A0A7J7GZP4 (Fibronectin type-III domain-containing protein {ECO:0000259|PROSITE:PS50853})
HSP 1 Score: 837.025 bits (2161), Expect = 0.000e+0
Identity = 417/653 (63.86%), Postives = 504/653 (77.18%), Query Frame = 0
Query: 1 MPDQVPKASKKHWKNQEVKKPSFAPNGQASRKQSRKAKNPSRFPEATEKCPALIPT-SLICQNPACRATLS-DDAFCKRCSCSICHSFDDNKDPSLWLECMSESGEGDSCGLSCHVECALQSRKAGVADIGQVVKLDGSYCCASCGKISGILGCWRKQLLIAKDARRVDVLYFRISMSYRLLDGTSRFKELHEIVASIKVKLDTELGPAKGISTKMARYIVSRLSVASDVQALCSTAIEKADEWLAAASKADPSRREGSLPAACKVLFKEIESTSIVVLLIELPTSSLEDIKGYKLWYCKTREESHSEEPTCRILKSQKRVRISNLLPCTEYSFRVVSYTETGDMGHSEAKCFTKSVEVIGKTPSSVGVNNIKESLQGVADTNVGTKHKTGAEVESNSGFQVRDLGKVLQIASSQEQGCLNELSGERIENCPGVKEPNPQPVHDP---LPRVSCELDLNVASVPDLNEELTPLVE-SKDEDNVIALGRVEPVGDEVSRDNQRNDVEKSHGSGDSQNWSHRPNGDVSAVDSKGKMNKKRAATANEELHDCDSTLVNGSPCGLHAASGSLGENFEYCVRIIRWLECQGHIKPEFRLKLLTWYSLRSSEQERRVVDTFVQTLVDDPSSLAGQLLDSFSDVVSSKKRRNGFCSKLWH 647
M +Q PK SKK KN E +K S +P Q RK RK +NP R P ATE+ P + + S IC+N ACRA LS +D FCKRCSC ICH FDDNKDPSLWL C SESG GDSCGLSCH+ECALQ K GV D+GQ+++LDGSYCCASCGK+SGILGCW+KQL IAKDARRVDVL +RI +SYRLLDGTSRF+ELHEIV K +L+TE+GP G+S KMAR IVSRLS+A ++Q LC AIEKADEWLA S +P+ REGSLPAAC+ F+E+ S+S+V++LIEL +S +DIKGYKLWYCK+R+E+H +EP C ++Q+R+ ISNL PCTEYSFR++SYTE GD+GHSEAKCFTKSVE+I K P+S +N E+LQ +N + KT VES+SGF+VRDLGK+L++A +QEQGC SG IE C V P +P+ P LP VS LDLNVASVPDLNEELTP E S++EDN D VS D ++N +SHGSGDSQNW+H NG+V VDS+GK+ +KRAA+ NEE HDCDSTL+NGSP + SG L ENFEYCV+IIRWLEC+GHIK EFRLKLLTW+SLRS+EQERRVV+TF+QT++DDPSSLA QL+DSFSD++SSK+ RNGFCSKLWH
Sbjct: 1 MTEQPPKTSKKILKNHEPRKVSSSPKDQPPRKSQRKGENPVRIPPATEQSPDFVHSNSWICKNAACRAVLSIEDTFCKRCSCCICHLFDDNKDPSLWLVCTSESGNGDSCGLSCHIECALQREKVGVVDLGQLMQLDGSYCCASCGKVSGILGCWKKQLSIAKDARRVDVLCYRIFLSYRLLDGTSRFQELHEIVRDAKARLETEVGPVNGVSAKMARGIVSRLSIAGEIQKLCCLAIEKADEWLATVSNTNPNHREGSLPAACRFHFEEVTSSSVVIVLIELQPASNDDIKGYKLWYCKSRDETHPKEPICVFPRAQRRILISNLQPCTEYSFRIISYTEAGDLGHSEAKCFTKSVEIIHKDPNSAPMNCKNENLQIEGSSNAQREPKTTTAVESSSGFKVRDLGKILRLAWAQEQGCFEGFSGIDIEECCQVNNP-AKPLETPKDQLPPVSRGLDLNVASVPDLNEELTPPFESSREEDN----------DDAVSHDIEKN---RSHGSGDSQNWTHGANGEVPDVDSEGKLCRKRAASTNEETHDCDSTLINGSPFRIGNESGCLDENFEYCVKIIRWLECEGHIKLEFRLKLLTWFSLRSTEQERRVVNTFIQTMIDDPSSLAAQLVDSFSDIISSKRPRNGFCSKLWH 639
BLAST of XM_017387023.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZM30 ((Putative VIN3-like protein 1 isoform X1 {ECO:0000313|EMBL:MPA45472.1}))
HSP 1 Score: 830.476 bits (2144), Expect = 0.000e+0
Identity = 414/653 (63.40%), Postives = 499/653 (76.42%), Query Frame = 0
Match: A0A5B6ZM30 ((Putative VIN3-like protein 1 isoform X1 {ECO:0000313|EMBL:MPA45472.1}))
HSP 1 Score: 830.476 bits (2144), Expect = 0.000e+0
Identity = 414/653 (63.40%), Postives = 499/653 (76.42%), Query Frame = 0
Query: 1 MPDQVPKASKKHWKNQEVKKPSFAPNGQASRKQSRKAKNPSRFPEATEKCPAL-IPTSLICQNPACRATLS-DDAFCKRCSCSICHSFDDNKDPSLWLECMSESGEGDSCGLSCHVECALQSRKAGVADIGQVVKLDGSYCCASCGKISGILGCWRKQLLIAKDARRVDVLYFRISMSYRLLDGTSRFKELHEIVASIKVKLDTELGPAKGISTKMARYIVSRLSVASDVQALCSTAIEKADEWLAAASKADPSRREGSLPAACKVLFKEIESTSIVVLLIELPTSSLEDIKGYKLWYCKTREESHSEEPTCRILKSQKRVRISNLLPCTEYSFRVVSYTETGDMGHSEAKCFTKSVEVIGKTPSSVGVNNIKESLQGVADTNVGTKHKTGAEVESNSGFQVRDLGKVLQIASSQEQGCLNELSGERIENCPGVKEP-NPQPVH-DPLPRVSCELDLNVASVPDLNEELTPLVES-KDEDNVIALGR-VEPVGDEVSRDNQRNDVEKSHGSGDSQNWSHRPNGDVSAVDSKGKMNKKRAATANEELHDCDSTLVNGSPCGLHAASGSLGENFEYCVRIIRWLECQGHIKPEFRLKLLTWYSLRSSEQERRVVDTFVQTLVDDPSSLAGQLLDSFSDVVSSKKRRNGFCSKLWH 647
M +Q+PK KK KNQE +K S + Q ++ RK NP R P ATE+ P S IC+N ACRA LS DD FCKRCSC ICH FDDNKDPSLWL C SESG GDSCGLSCH+ECALQ K GV D+GQ+++LDGSYCCASCGK+SGILGCW+KQL IAKDARRVDVL +RI +SYRL+DGTSRFKELHEIV K KL+TE+GP G+S KMAR IVSRLS+A DVQ LCS AIEKADEWLA S +P+ REGSL AAC+ LF+E+ S+S+V +LIEL T S +D+KGYK WYCK+R+E++ +EP C + Q+R+ ISNL PCTEYSFR++SYTE+GD+GHSEAKCFTKSVE+I K P+S +N+ KE +N T KT VES+S F+VRDLGK+L +A +QEQGC G I+ C GV E P+ + D LP VS LDLNV+SVPDLNEELTP ES +DE N LG+ VE D V D ++N + +SHGSGDSQNW+ P G+V AV S+ ++ +KRAA+ NEE HDCDSTL+NGSP + SG L ENFEYCV+IIRWLEC+GHIK EFRLKLLTW+SLRS+EQE RVV+TF+QTL++DPSSLAGQL+DSFSD++SSK+ RNGFCSKLWH
Sbjct: 71 MTEQLPKTIKKTLKNQEPRKASLSLKDQLPSRKQRKGGNPIRIPPATEQSPDFGCSNSWICKNSACRAVLSIDDTFCKRCSCCICHLFDDNKDPSLWLVCTSESGRGDSCGLSCHIECALQREKVGVVDLGQLMQLDGSYCCASCGKVSGILGCWKKQLSIAKDARRVDVLCYRIFLSYRLIDGTSRFKELHEIVRDAKAKLETEVGPVNGVSAKMARGIVSRLSIAGDVQKLCSLAIEKADEWLATISNVNPNCREGSLHAACRFLFEEVTSSSVVFVLIELFTGSADDVKGYKFWYCKSRDETYPKEPICVFPRDQRRILISNLQPCTEYSFRIISYTESGDLGHSEAKCFTKSVEIIHKNPNSTAMNHEKEIPHTEGCSNAKTLSKTTGAVESSSEFKVRDLGKILHLAWAQEQGCFKGFCGVDIKKCCGVSEGIKPETLEDDQLPSVSHGLDLNVSSVPDLNEELTPPFESPRDEGNGFTLGQAVEADDDTVFHDIEKNGLARSHGSGDSQNWTRGPTGEVLAVGSRVELCRKRAASTNEETHDCDSTLINGSPFQISNGSGCLDENFEYCVKIIRWLECEGHIKKEFRLKLLTWFSLRSTEQECRVVNTFIQTLIEDPSSLAGQLVDSFSDIISSKRPRNGFCSKLWH 723
BLAST of XM_017387023.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0FC85 ((Fibronectin type III domain-containing protein {ECO:0000313|EMBL:GFY96314.1}))
HSP 1 Score: 826.624 bits (2134), Expect = 0.000e+0
Identity = 413/656 (62.96%), Postives = 503/656 (76.68%), Query Frame = 0
Match: A0A7J0FC85 ((Fibronectin type III domain-containing protein {ECO:0000313|EMBL:GFY96314.1}))
HSP 1 Score: 826.624 bits (2134), Expect = 0.000e+0
Identity = 413/656 (62.96%), Postives = 503/656 (76.68%), Query Frame = 0
Query: 1 MPDQVPKASKKHWKNQEVKKPSFAPNGQA-SRKQSRKAKNPSRFPEATEKCPAL-IPTSLICQNPACRATLS-DDAFCKRCSCSICHSFDDNKDPSLWLECMSESGEGDSCGLSCHVECALQSRKAGVADIGQVVKLDGSYCCASCGKISGILGCWRKQLLIAKDARRVDVLYFRISMSYRLLDGTSRFKELHEIVASIKVKLDTELGPAKGISTKMARYIVSRLSVASDVQALCSTAIEKADEWLAAASKADPSRREGSLPAACKVLFKEIESTSIVVLLIELPTSSLEDIKGYKLWYCKTREESHSEEPTCRILKSQKRVRISNLLPCTEYSFRVVSYTETGDMGHSEAKCFTKSVEVIGKTPSSVGVNNIKES--LQGVADTNVGTKHKTGAEVESNSGFQVRDLGKVLQIASSQEQGCLNELSGERIENCPGVKEPNPQPVH---DPLPRVSCELDLNVASVPDLNEELTPLVE-SKDEDNVIALGRVEPVGDEVSRDNQRNDVEKSHGSGDSQNWSHRPNGDVSAVDSKGKMNKKRAATANEELHDCDSTLVNGSPCGLHAASGSLGENFEYCVRIIRWLECQGHIKPEFRLKLLTWYSLRSSEQERRVVDTFVQTLVDDPSSLAGQLLDSFSDVVSSKKRRNGFCSKLWH 647
M +Q+ KASKK KNQE +K S +P Q RK RK +NP R P +TE+CP S +C+N ACRA+LS DD FCKRCSC ICH FDDNKDPSLWL C SESG GDSCGLSCH+ECALQ K GV D+GQ+++LDGSYCCASCGK+SGILGCW+KQL IAKDARRVDVL +RI +SYRLLDGTSRFKELHEIV K KL+TE+GP G+S +AR IVSRLS+A ++Q LCS AI+KADEWLAA S +P+ REGSLP+AC+ F+ + S+S+V++LIELP + DIKGYKLWYCK+R+ESH +EP ++Q+R+ ISNL PCTEYSFR++SYTE GD+GHSEAKCFTKSVE+I K P+S N+ E+ ++G +D TK K V S++GF+VRDLGK+L + +QEQGC SG +E C GV P +PV DPLP VS LDLNVASVPDLNEELTP E S+DED+V S D ++ND+ +SHGSGDSQNW+H NG+V AVDS+ + ++KRAAT NEE H+ +STL+NGSP + G L ENFEYCV++IRWLEC+GHI+ EFRLKLLTW+SLRSSEQERRVV+TF+QTL+DDPSSLA QL+DSFSD+VSSK+ RNGFCSKLWH
Sbjct: 1 MAEQLSKASKKILKNQEPRKVSLSPKVQTFGRKHQRKGENPVRIPPSTEQCPDFGNSNSWVCKNKACRASLSTDDTFCKRCSCCICHLFDDNKDPSLWLVCTSESGNGDSCGLSCHIECALQREKVGVVDLGQLMQLDGSYCCASCGKVSGILGCWKKQLSIAKDARRVDVLCYRIFLSYRLLDGTSRFKELHEIVRDAKAKLETEVGPVNGVSANLARGIVSRLSIAGELQKLCSLAIDKADEWLAAVSNRNPNCREGSLPSACRFHFEGVTSSSVVIVLIELPAALSYDIKGYKLWYCKSRDESHPKEPISDFPRAQRRILISNLQPCTEYSFRIISYTEAGDLGHSEAKCFTKSVEIIHKNPNSAATNHTSENPHIEGSSDATRETKGKPTPAVGSSAGFKVRDLGKILHLVWAQEQGCFEGFSGIDVEECCGVNNP-IKPVETPKDPLPSVSRGLDLNVASVPDLNEELTPPFESSRDEDDV------------ASHDIEKNDLARSHGSGDSQNWTHGINGEVPAVDSRSEPSRKRAATTNEETHESNSTLINGSPLRISNGLGCLDENFEYCVKVIRWLECEGHIQQEFRLKLLTWFSLRSSEQERRVVNTFIQTLIDDPSSLAAQLVDSFSDMVSSKRPRNGFCSKLWH 643
BLAST of XM_017387023.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0FHU9 ((Fibronectin type III domain-containing protein {ECO:0000313|EMBL:GFY98270.1}))
HSP 1 Score: 824.698 bits (2129), Expect = 0.000e+0
Identity = 412/656 (62.80%), Postives = 501/656 (76.37%), Query Frame = 0
Match: A0A7J0FHU9 ((Fibronectin type III domain-containing protein {ECO:0000313|EMBL:GFY98270.1}))
HSP 1 Score: 824.698 bits (2129), Expect = 0.000e+0
Identity = 412/656 (62.80%), Postives = 501/656 (76.37%), Query Frame = 0
Query: 1 MPDQVPKASKKHWKNQEVKKPSFAPNGQA-SRKQSRKAKNPSRFPEATEKCPAL-IPTSLICQNPACRATLS-DDAFCKRCSCSICHSFDDNKDPSLWLECMSESGEGDSCGLSCHVECALQSRKAGVADIGQVVKLDGSYCCASCGKISGILGCWRKQLLIAKDARRVDVLYFRISMSYRLLDGTSRFKELHEIVASIKVKLDTELGPAKGISTKMARYIVSRLSVASDVQALCSTAIEKADEWLAAASKADPSRREGSLPAACKVLFKEIESTSIVVLLIELPTSSLEDIKGYKLWYCKTREESHSEEPTCRILKSQKRVRISNLLPCTEYSFRVVSYTETGDMGHSEAKCFTKSVEVIGKTPSSVGVNNIKES--LQGVADTNVGTKHKTGAEVESNSGFQVRDLGKVLQIASSQEQGCLNELSGERIENCPGVKEPNPQPVH---DPLPRVSCELDLNVASVPDLNEELTPLVE-SKDEDNVIALGRVEPVGDEVSRDNQRNDVEKSHGSGDSQNWSHRPNGDVSAVDSKGKMNKKRAATANEELHDCDSTLVNGSPCGLHAASGSLGENFEYCVRIIRWLECQGHIKPEFRLKLLTWYSLRSSEQERRVVDTFVQTLVDDPSSLAGQLLDSFSDVVSSKKRRNGFCSKLWH 647
M +Q PK+SKK KNQE +K S +P Q RK RK +NP R +TE+CP S +C+N C+A+LS DD FCKRCSC ICH FDDNKDPSLWL C SESG GDSCGLSCH+ECALQ K GV D+GQ+++LDGSYCCASCGK+SGILGCW+KQL IAKDARRVDVL +RI +SYRLLDGTSRFKELHEIV K KL+TE+GP G+S KMAR IVSRLS+A ++Q LCS AI+K DEWLAA S +P+ REGSLPAAC+ F+ + S+S+V++LIELP + +DIKGYKLWYCKTR+ESH +EP ++Q+R+ ISNL PCTEYSF ++SYTE GD+GHSEAKCFTKSVE+I K P+S N+ E+ ++G +D K KT V S++GF+VRDLGK+L + +QEQGC SG +E C GV +PV D LP VS ELDLNVASVPDLNEELTP E S+DED+V S D ++ND+ +SHGSGDSQNW+HR NG+V AVDS+ + ++KRAATANEE+H+ +STL+NGSP + G L ENFEYCV+IIRWLEC+GHI+ EFRLKLLTW+SLRS EQERRVV+TF+QTL+DDPSSLA QL+DSFSD+VSSK+ RN FCSKLWH
Sbjct: 1 MAEQTPKSSKKILKNQEPRKVSLSPKVQTFGRKHQRKRENPVRILPSTEQCPDFGNSNSWVCKNKTCKASLSTDDTFCKRCSCCICHLFDDNKDPSLWLACTSESGNGDSCGLSCHIECALQREKVGVVDLGQLMQLDGSYCCASCGKVSGILGCWKKQLNIAKDARRVDVLCYRIFLSYRLLDGTSRFKELHEIVRDAKAKLETEVGPVNGVSAKMARGIVSRLSIAGELQKLCSLAIDKVDEWLAAVSNRNPNHREGSLPAACRFHFEGVTSSSVVIVLIELPAALSDDIKGYKLWYCKTRDESHPKEPIFDFPRAQRRILISNLQPCTEYSFWIISYTEAGDLGHSEAKCFTKSVEIIHKNPNSAATNHANENPHVEGSSDATRELKGKTTPAVGSSAGFKVRDLGKILHLVWAQEQGCFEGFSGIDVEECCGVNN-TIKPVETSKDQLPSVSRELDLNVASVPDLNEELTPPFESSRDEDDV------------ASHDIEKNDLARSHGSGDSQNWTHRTNGEVPAVDSRSEPSRKRAATANEEIHESNSTLINGSPLQISNRLGCLDENFEYCVKIIRWLECEGHIQQEFRLKLLTWFSLRSLEQERRVVNTFIQTLIDDPSSLAAQLVDSFSDMVSSKRPRNDFCSKLWH 643
BLAST of XM_017387023.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6SS90 ((VIN3-like protein 1 isoform X2 {ECO:0000313|RefSeq:XP_027068641.1}))
HSP 1 Score: 824.313 bits (2128), Expect = 0.000e+0
Identity = 410/654 (62.69%), Postives = 503/654 (76.91%), Query Frame = 0
Match: A0A6P6SS90 ((VIN3-like protein 1 isoform X2 {ECO:0000313|RefSeq:XP_027068641.1}))
HSP 1 Score: 824.313 bits (2128), Expect = 0.000e+0
Identity = 410/654 (62.69%), Postives = 503/654 (76.91%), Query Frame = 0
Query: 1 MPDQVPKASKKHWKNQEVKKPSFAPNGQASRKQSRKAKNPSRFPEATEKCPAL-IPTSLICQNPACRATLS-DDAFCKRCSCSICHSFDDNKDPSLWLECMSESGEGDSCGLSCHVECALQSRKAGVADIGQVVKLDGSYCCASCGKISGILGCWRKQLLIAKDARRVDVLYFRISMSYRLLDGTSRFKELHEIVASIKVKLDTELGPAKGISTKMARYIVSRLSVASDVQALCSTAIEKADEWLAAASKADPSRREGSLPAACKVLFKEIESTSIVVLLIELPTSSLEDIKGYKLWYCKTREESHSEEPTCRILKSQKRVRISNLLPCTEYSFRVVSYTETGDMGHSEAKCFTKSVEVIGKTPSSVGVNNI--KESLQGVADTNVGTKHKTGAEVESNSGFQVRDLGKVLQIASSQEQGCLNELSGERIENCPGV-KEPNPQPVHDPLPRVSCELDLNVASVPDLNEELTPLVE-SKDEDNVIALGR-VEPVGDEVSRDNQRNDVEKSHGSGDSQNWSHRPNGDVSAVDSKGKMNKKRAATANEELHDCDSTLVNGSPCGLHAASGSLGENFEYCVRIIRWLECQGHIKPEFRLKLLTWYSLRSSEQERRVVDTFVQTLVDDPSSLAGQLLDSFSDVVSSKKRRNGFCSKLWH 647
M + K SKK KNQ+ KK + +P Q +KQ+RKA+NP R P TE+C S IC+N ACRATLS +D FCKRCSC ICH FDDNKDPSLWLEC SESG+GD CGLSCH+ECALQ K GV D+GQ+++LDGSYCCA+CGK+SGILG W+KQL IAKDARRVDVL +RI +SYRLLDGTSRFKELHEI+ K KL+TE+GP G+S KMAR IVSRLSVA +VQ LCS AIEKADEWL + S A REGSLPAAC+ LF+E+ STS+V++LIEL + S D+KGYKLWYCK+REE++++EP C ++Q+R+ ISNL PCTEYSFR+VSY E GD+GHSEAKCFTKS E+I K +SV N+ KE+ ++ +H+T +ES+SGF+VRDLGK+L++A +QEQGC G I C V K P+ + + +P VS ELDLNVASVPDLNEE PL+E S+DEDN L R VE D VS D ++N V +SHGSGDSQNW+H NG+V AVDSK + ++KRAA+ N E HD DSTL+NGSP + G L ENFEYCV+IIRWLEC+G I+ EFRLKLLTW+SLRS++QERRVV+TF+QTL+DDPSSLAGQL+DSF+D++SSK+ RNGFCS+LWH
Sbjct: 72 MSEPATKISKKPIKNQDQKKTASSPKDQPLKKQNRKAENPVRIPPTTEQCADFKCSNSWICKNSACRATLSIEDTFCKRCSCCICHLFDDNKDPSLWLECASESGQGDYCGLSCHIECALQRGKVGVVDLGQLMQLDGSYCCAACGKVSGILGYWKKQLNIAKDARRVDVLCYRIFLSYRLLDGTSRFKELHEIIKEAKAKLETEVGPVNGVSAKMARGIVSRLSVAGNVQTLCSLAIEKADEWLTSKSSATADYREGSLPAACRFLFEEVTSTSVVIVLIELSSVSSNDVKGYKLWYCKSREENYTKEPVCVFPRAQRRILISNLQPCTEYSFRIVSYMEGGDLGHSEAKCFTKSREIIHKNSNSVAENHSHRKENPDSGGSSSAEMEHRTPTAIESDSGFKVRDLGKILRLAWAQEQGCFERFCGADIVRCSSVSKVIKPESIQEDVPSVSRELDLNVASVPDLNEEAAPLIESSRDEDNGCTLARTVEADDDAVSHDIEKNGVARSHGSGDSQNWNHGQNGEVPAVDSKVEASRKRAAS-NGETHDSDSTLINGSPFRVRNGPGCLDENFEYCVKIIRWLECEGFIEKEFRLKLLTWFSLRSTDQERRVVNTFIQTLLDDPSSLAGQLVDSFTDIISSKRPRNGFCSRLWH 724
BLAST of XM_017387023.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6T3K5 ((VIN3-like protein 1 isoform X1 {ECO:0000313|RefSeq:XP_027072720.1}))
HSP 1 Score: 822.772 bits (2124), Expect = 0.000e+0
Identity = 410/654 (62.69%), Postives = 503/654 (76.91%), Query Frame = 0
Match: A0A6P6T3K5 ((VIN3-like protein 1 isoform X1 {ECO:0000313|RefSeq:XP_027072720.1}))
HSP 1 Score: 822.772 bits (2124), Expect = 0.000e+0
Identity = 410/654 (62.69%), Postives = 503/654 (76.91%), Query Frame = 0
Query: 1 MPDQVPKASKKHWKNQEVKKPSFAPNGQASRKQSRKAKNPSRFPEATEKCPAL-IPTSLICQNPACRATLS-DDAFCKRCSCSICHSFDDNKDPSLWLECMSESGEGDSCGLSCHVECALQSRKAGVADIGQVVKLDGSYCCASCGKISGILGCWRKQLLIAKDARRVDVLYFRISMSYRLLDGTSRFKELHEIVASIKVKLDTELGPAKGISTKMARYIVSRLSVASDVQALCSTAIEKADEWLAAASKADPSRREGSLPAACKVLFKEIESTSIVVLLIELPTSSLEDIKGYKLWYCKTREESHSEEPTCRILKSQKRVRISNLLPCTEYSFRVVSYTETGDMGHSEAKCFTKSVEVIGKTPSSVGVNNI--KESLQGVADTNVGTKHKTGAEVESNSGFQVRDLGKVLQIASSQEQGCLNELSGERIENCPGV-KEPNPQPVHDPLPRVSCELDLNVASVPDLNEELTPLVE-SKDEDNVIALGR-VEPVGDEVSRDNQRNDVEKSHGSGDSQNWSHRPNGDVSAVDSKGKMNKKRAATANEELHDCDSTLVNGSPCGLHAASGSLGENFEYCVRIIRWLECQGHIKPEFRLKLLTWYSLRSSEQERRVVDTFVQTLVDDPSSLAGQLLDSFSDVVSSKKRRNGFCSKLWH 647
M + K SKK KN + KK + +P Q +KQ+RKA+NP R P TE+C S IC+N ACRATLS +D FCKRCSC ICH FDDNKDPSLWLEC SESG+GD CGLSCH+ECALQ K GV D+GQ+++LDGSYCCA+CGK+SGILG W+KQL IAKDARRVDVL +RI +SYRLLDGTSRFKELHEI+ K KL+TE+GP G+S KMAR IVSRLSVA +VQ LCS AIEKADEWL + S A REGSLPAAC+ LF+E+ STS+V++LIEL + S D+KGYKLWYCK+REE++++EP C ++Q+R+ ISNL PCTEYSFR+VSY E GD+GHSEAKCFTKS E+I K +SV N+ KE+ ++ +H+T +ES+SGF+VRDLGK+L++A +QEQGC G I C V K P+ + + +P VS ELDLNVASVPDLNEE PL+E S+DEDN L R VE D VS D ++N V +SHGSGDSQNW+H NG+V AVDSK + ++KRAA+ N E HD DSTL+NGSP + G L ENFEYCV+IIRWLEC+G+I+ EFRLKLLTW+SLRS++QERRVV+TF+QTL+DDPSSLAGQL+DSFSD++SSK+ RNGFCS+LWH
Sbjct: 72 MSEPATKISKKPIKNLDQKKTASSPKDQPLKKQNRKAENPVRIPPITEQCADFKCSNSWICKNSACRATLSIEDTFCKRCSCCICHLFDDNKDPSLWLECASESGQGDYCGLSCHIECALQRGKVGVVDLGQLMQLDGSYCCAACGKVSGILGYWKKQLNIAKDARRVDVLCYRIFLSYRLLDGTSRFKELHEIIKEAKAKLETEVGPVNGVSAKMARGIVSRLSVAGNVQTLCSLAIEKADEWLTSKSSATADYREGSLPAACRFLFEEVTSTSVVIVLIELSSVSSNDVKGYKLWYCKSREENYTKEPVCVFPRAQRRILISNLQPCTEYSFRIVSYMEGGDLGHSEAKCFTKSREIIHKNSNSVAENHSHRKENPDSGGSSSAEMEHRTPTAIESDSGFKVRDLGKILRLAWAQEQGCFERFCGADIVRCSSVSKVIKPESIQEDVPSVSRELDLNVASVPDLNEEAAPLIESSRDEDNGCTLARTVEADDDAVSHDIEKNGVARSHGSGDSQNWNHGQNGEVPAVDSKVEASRKRAAS-NGETHDSDSTLINGSPFRVRNGPGCLDENFEYCVKIIRWLECEGYIEKEFRLKLLTWFSLRSTDQERRVVNTFIQTLLDDPSSLAGQLVDSFSDIISSKRPRNGFCSRLWH 724
BLAST of XM_017387023.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6T495 ((VIN3-like protein 1 isoform X2 {ECO:0000313|RefSeq:XP_027072721.1}))
HSP 1 Score: 821.231 bits (2120), Expect = 0.000e+0
Identity = 410/654 (62.69%), Postives = 503/654 (76.91%), Query Frame = 0
Match: A0A6P6T495 ((VIN3-like protein 1 isoform X2 {ECO:0000313|RefSeq:XP_027072721.1}))
HSP 1 Score: 821.231 bits (2120), Expect = 0.000e+0
Identity = 410/654 (62.69%), Postives = 503/654 (76.91%), Query Frame = 0
Query: 1 MPDQVPKASKKHWKNQEVKKPSFAPNGQASRKQSRKAKNPSRFPEATEKCPAL-IPTSLICQNPACRATLS-DDAFCKRCSCSICHSFDDNKDPSLWLECMSESGEGDSCGLSCHVECALQSRKAGVADIGQVVKLDGSYCCASCGKISGILGCWRKQLLIAKDARRVDVLYFRISMSYRLLDGTSRFKELHEIVASIKVKLDTELGPAKGISTKMARYIVSRLSVASDVQALCSTAIEKADEWLAAASKADPSRREGSLPAACKVLFKEIESTSIVVLLIELPTSSLEDIKGYKLWYCKTREESHSEEPTCRILKSQKRVRISNLLPCTEYSFRVVSYTETGDMGHSEAKCFTKSVEVIGKTPSSVGVNNI--KESLQGVADTNVGTKHKTGAEVESNSGFQVRDLGKVLQIASSQEQGCLNELSGERIENCPGV-KEPNPQPVHDPLPRVSCELDLNVASVPDLNEELTPLVE-SKDEDNVIALGR-VEPVGDEVSRDNQRNDVEKSHGSGDSQNWSHRPNGDVSAVDSKGKMNKKRAATANEELHDCDSTLVNGSPCGLHAASGSLGENFEYCVRIIRWLECQGHIKPEFRLKLLTWYSLRSSEQERRVVDTFVQTLVDDPSSLAGQLLDSFSDVVSSKKRRNGFCSKLWH 647
M + K SKK KN + KK + +P Q +KQ+RKA+NP R P TE+C S IC+N ACRATLS +D FCKRCSC ICH FDDNKDPSLWLEC SESG+GD CGLSCH+ECALQ K GV D+GQ+++LDGSYCCA+CGK+SGILG W+KQL IAKDARRVDVL +RI +SYRLLDGTSRFKELHEI+ K KL+TE+GP G+S KMAR IVSRLSVA +VQ LCS AIEKADEWL + S A REGSLPAAC+ LF+E+ STS+V++LIEL + S D+KGYKLWYCK+REE++++EP C ++Q+R+ ISNL PCTEYSFR+VSY E GD+GHSEAKCFTKS E+I K +SV N+ KE+ ++ +H+T +ES+SGF+VRDLGK+L++A +QEQGC G I C V K P+ + + +P VS ELDLNVASVPDLNEE PL+E S+DEDN L R VE D VS D ++N V +SHGSGDSQNW+H NG+V AVDSK + ++KRAA+ N E HD DSTL+NGSP + G L ENFEYCV+IIRWLEC+G+I+ EFRLKLLTW+SLRS++QERRVV+TF+QTL+DDPSSLAGQL+DSFSD++SSK+ RNGFCS+LWH
Sbjct: 1 MSEPATKISKKPIKNLDQKKTASSPKDQPLKKQNRKAENPVRIPPITEQCADFKCSNSWICKNSACRATLSIEDTFCKRCSCCICHLFDDNKDPSLWLECASESGQGDYCGLSCHIECALQRGKVGVVDLGQLMQLDGSYCCAACGKVSGILGYWKKQLNIAKDARRVDVLCYRIFLSYRLLDGTSRFKELHEIIKEAKAKLETEVGPVNGVSAKMARGIVSRLSVAGNVQTLCSLAIEKADEWLTSKSSATADYREGSLPAACRFLFEEVTSTSVVIVLIELSSVSSNDVKGYKLWYCKSREENYTKEPVCVFPRAQRRILISNLQPCTEYSFRIVSYMEGGDLGHSEAKCFTKSREIIHKNSNSVAENHSHRKENPDSGGSSSAEMEHRTPTAIESDSGFKVRDLGKILRLAWAQEQGCFERFCGADIVRCSSVSKVIKPESIQEDVPSVSRELDLNVASVPDLNEEAAPLIESSRDEDNGCTLARTVEADDDAVSHDIEKNGVARSHGSGDSQNWNHGQNGEVPAVDSKVEASRKRAAS-NGETHDSDSTLINGSPFRVRNGPGCLDENFEYCVKIIRWLECEGYIEKEFRLKLLTWFSLRSTDQERRVVNTFIQTLLDDPSSLAGQLVDSFSDIISSKRPRNGFCSRLWH 653
BLAST of XM_017387023.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q4R6 ((VIN3-like protein {ECO:0000313|EMBL:PSS01860.1}))
HSP 1 Score: 820.076 bits (2117), Expect = 0.000e+0
Identity = 410/656 (62.50%), Postives = 502/656 (76.52%), Query Frame = 0
Match: A0A2R6Q4R6 ((VIN3-like protein {ECO:0000313|EMBL:PSS01860.1}))
HSP 1 Score: 820.076 bits (2117), Expect = 0.000e+0
Identity = 410/656 (62.50%), Postives = 502/656 (76.52%), Query Frame = 0
Query: 1 MPDQVPKASKKHWKNQEVKKPSFAPNGQA-SRKQSRKAKNPSRFPEATEKCPAL-IPTSLICQNPACRATLS-DDAFCKRCSCSICHSFDDNKDPSLWLECMSESGEGDSCGLSCHVECALQSRKAGVADIGQVVKLDGSYCCASCGKISGILGCWRKQLLIAKDARRVDVLYFRISMSYRLLDGTSRFKELHEIVASIKVKLDTELGPAKGISTKMARYIVSRLSVASDVQALCSTAIEKADEWLAAASKADPSRREGSLPAACKVLFKEIESTSIVVLLIELPTSSLEDIKGYKLWYCKTREESHSEEPTCRILKSQKRVRISNLLPCTEYSFRVVSYTETGDMGHSEAKCFTKSVEVIGKTPSSVGVNNIKES--LQGVADTNVGTKHKTGAEVESNSGFQVRDLGKVLQIASSQEQGCLNELSGERIENCPGVKEPNPQPVH---DPLPRVSCELDLNVASVPDLNEELTPLVE-SKDEDNVIALGRVEPVGDEVSRDNQRNDVEKSHGSGDSQNWSHRPNGDVSAVDSKGKMNKKRAATANEELHDCDSTLVNGSPCGLHAASGSLGENFEYCVRIIRWLECQGHIKPEFRLKLLTWYSLRSSEQERRVVDTFVQTLVDDPSSLAGQLLDSFSDVVSSKKRRNGFCSKLWH 647
M +Q+ KASKK+ KNQE +K S +P Q RK RK +NP R P +TE+CP S +C+N ACRA+LS DD FCKRCSC ICH FDDNKDPSLWL C SESG+GDSCGLSCH+ECALQ K GV D+GQ+++LDGSYCCASCGK+SGILG W+KQL IAKDARRVDVL +RI +SYRLLDGTSRFKELHEIV K KL+TE+GP G+S MAR IVSRLS+A ++Q LCS AI+KADEWLAA S +P+ REGSLP+AC+ F+ + S+S+V++LIELP + DIKGYKLWYCK+R+ESH +EP ++Q+R+ ISNL PCTEYSFR++SYTE GD+GHSEAKCFTKSVE+I K P+S N+ E+ ++G +D TK + V S++GF+VRDLGK+L + +QEQGC G +E C GV +PV DPLP VS LDLNVASVPDLNEELTP E S+DED+V S D ++ND+ +SHGSGDSQNW+H NG+V AVDS+ + ++KRAAT NEE H+ +STL+NGSP + G L ENFEYCV++IRWLEC+GHI+ EFRLKLLTW+SLRSSEQERRVV+TF+QTL+DDPSSLA QL+DSFSD+VSSK+ RNGFCSKLWH
Sbjct: 1 MAEQLSKASKKNLKNQEPRKVSLSPKVQTFGRKHQRKGENPVRIPPSTEQCPDFGNSNSWVCKNKACRASLSTDDTFCKRCSCCICHLFDDNKDPSLWLVCTSESGKGDSCGLSCHIECALQREKVGVVDLGQLMQLDGSYCCASCGKVSGILGYWKKQLSIAKDARRVDVLCYRIFLSYRLLDGTSRFKELHEIVRDAKAKLETEVGPVNGVSANMARGIVSRLSIAGELQKLCSLAIDKADEWLAAVSNRNPNCREGSLPSACRFHFEGVTSSSVVIVLIELPATLSYDIKGYKLWYCKSRDESHPKEPISDFPRAQRRILISNLQPCTEYSFRIISYTEAGDLGHSEAKCFTKSVEIIHKNPNSAATNHASENPHIEGSSDATRETKGEPTPAVGSSAGFKVRDLGKILHLVWAQEQGCFEGFPGIDLEECCGVNN-TIKPVETPKDPLPSVSRGLDLNVASVPDLNEELTPPFESSRDEDDV------------ASHDIEKNDLARSHGSGDSQNWTHGINGEVPAVDSRSEPSRKRAATTNEETHESNSTLINGSPLRISNGLGCLDENFEYCVKVIRWLECEGHIQQEFRLKLLTWFSLRSSEQERRVVNTFIQTLIDDPSSLAAQLVDSFSDMVSSKRPRNGFCSKLWH 643
BLAST of XM_017387023.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6SS58 ((VIN3-like protein 1 isoform X1 {ECO:0000313|RefSeq:XP_027068640.1}))
HSP 1 Score: 815.839 bits (2106), Expect = 0.000e+0
Identity = 410/662 (61.93%), Postives = 503/662 (75.98%), Query Frame = 0
Match: A0A6P6SS58 ((VIN3-like protein 1 isoform X1 {ECO:0000313|RefSeq:XP_027068640.1}))
HSP 1 Score: 815.839 bits (2106), Expect = 0.000e+0
Identity = 410/662 (61.93%), Postives = 503/662 (75.98%), Query Frame = 0
Query: 1 MPDQVPKASKKHWKNQEVKKPSFAPNGQASRKQSRKAKNPSRFPEATEKCPAL-IPTSLICQNPACRATLS-DDAFCKRCSCSICHSFDDNKDPSLWLECMSESGEGDSCGLSCHVECALQSRKAGVADIGQVVKLDGSYCCASCGKISGILGCWRKQLLIAKDARRVDVLYFRISMSYRLLDGTSRFKELHEIVASIKVKLDTELGPAKGISTKMARYIVSRLSVASDVQALCSTAIEKADEWLAAASKADPSRR--------EGSLPAACKVLFKEIESTSIVVLLIELPTSSLEDIKGYKLWYCKTREESHSEEPTCRILKSQKRVRISNLLPCTEYSFRVVSYTETGDMGHSEAKCFTKSVEVIGKTPSSVGVNNI--KESLQGVADTNVGTKHKTGAEVESNSGFQVRDLGKVLQIASSQEQGCLNELSGERIENCPGV-KEPNPQPVHDPLPRVSCELDLNVASVPDLNEELTPLVE-SKDEDNVIALGR-VEPVGDEVSRDNQRNDVEKSHGSGDSQNWSHRPNGDVSAVDSKGKMNKKRAATANEELHDCDSTLVNGSPCGLHAASGSLGENFEYCVRIIRWLECQGHIKPEFRLKLLTWYSLRSSEQERRVVDTFVQTLVDDPSSLAGQLLDSFSDVVSSKKRRNGFCSKLWH 647
M + K SKK KNQ+ KK + +P Q +KQ+RKA+NP R P TE+C S IC+N ACRATLS +D FCKRCSC ICH FDDNKDPSLWLEC SESG+GD CGLSCH+ECALQ K GV D+GQ+++LDGSYCCA+CGK+SGILG W+KQL IAKDARRVDVL +RI +SYRLLDGTSRFKELHEI+ K KL+TE+GP G+S KMAR IVSRLSVA +VQ LCS AIEKADEWL + S A R EGSLPAAC+ LF+E+ STS+V++LIEL + S D+KGYKLWYCK+REE++++EP C ++Q+R+ ISNL PCTEYSFR+VSY E GD+GHSEAKCFTKS E+I K +SV N+ KE+ ++ +H+T +ES+SGF+VRDLGK+L++A +QEQGC G I C V K P+ + + +P VS ELDLNVASVPDLNEE PL+E S+DEDN L R VE D VS D ++N V +SHGSGDSQNW+H NG+V AVDSK + ++KRAA+ N E HD DSTL+NGSP + G L ENFEYCV+IIRWLEC+G I+ EFRLKLLTW+SLRS++QERRVV+TF+QTL+DDPSSLAGQL+DSF+D++SSK+ RNGFCS+LWH
Sbjct: 72 MSEPATKISKKPIKNQDQKKTASSPKDQPLKKQNRKAENPVRIPPTTEQCADFKCSNSWICKNSACRATLSIEDTFCKRCSCCICHLFDDNKDPSLWLECASESGQGDYCGLSCHIECALQRGKVGVVDLGQLMQLDGSYCCAACGKVSGILGYWKKQLNIAKDARRVDVLCYRIFLSYRLLDGTSRFKELHEIIKEAKAKLETEVGPVNGVSAKMARGIVSRLSVAGNVQTLCSLAIEKADEWLTSKSSATADYRGAWFPILAEGSLPAACRFLFEEVTSTSVVIVLIELSSVSSNDVKGYKLWYCKSREENYTKEPVCVFPRAQRRILISNLQPCTEYSFRIVSYMEGGDLGHSEAKCFTKSREIIHKNSNSVAENHSHRKENPDSGGSSSAEMEHRTPTAIESDSGFKVRDLGKILRLAWAQEQGCFERFCGADIVRCSSVSKVIKPESIQEDVPSVSRELDLNVASVPDLNEEAAPLIESSRDEDNGCTLARTVEADDDAVSHDIEKNGVARSHGSGDSQNWNHGQNGEVPAVDSKVEASRKRAAS-NGETHDSDSTLINGSPFRVRNGPGCLDENFEYCVKIIRWLECEGFIEKEFRLKLLTWFSLRSTDQERRVVNTFIQTLLDDPSSLAGQLVDSFTDIISSKRPRNGFCSRLWH 732
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6ZRW3 | E-Value: 0.000e+0, PID: 64.01 | (Putative VIN3-like protein 1 isoform X1 {ECO:0000... [more] |
| A0A7J7GZP4 | E-Value: 0.000e+0, PID: 63.86 | Fibronectin type-III domain-containing protein {EC... [more] |
| A0A5B6ZM30 | E-Value: 0.000e+0, PID: 63.40 | (Putative VIN3-like protein 1 isoform X1 {ECO:0000... [more] |
| A0A7J0FC85 | E-Value: 0.000e+0, PID: 62.96 | (Fibronectin type III domain-containing protein {E... [more] |
| A0A7J0FHU9 | E-Value: 0.000e+0, PID: 62.80 | (Fibronectin type III domain-containing protein {E... [more] |
| A0A6P6SS90 | E-Value: 0.000e+0, PID: 62.69 | (VIN3-like protein 1 isoform X2 {ECO:0000313|RefSe... [more] |
| A0A6P6T3K5 | E-Value: 0.000e+0, PID: 62.69 | (VIN3-like protein 1 isoform X1 {ECO:0000313|RefSe... [more] |
| A0A6P6T495 | E-Value: 0.000e+0, PID: 62.69 | (VIN3-like protein 1 isoform X2 {ECO:0000313|RefSe... [more] |
| A0A2R6Q4R6 | E-Value: 0.000e+0, PID: 62.50 | (VIN3-like protein {ECO:0000313|EMBL:PSS01860.1})[more] |
| A0A6P6SS58 | E-Value: 0.000e+0, PID: 61.93 | (VIN3-like protein 1 isoform X1 {ECO:0000313|RefSe... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |