Resource Type:
Polypeptide
Name:
XM_017382042.1
Identifier:
XM_017382042.1-protein
Sequence:
MDESGARFEGIASTARKKRSQTSRRPKPESQPLAEGRNKSTLLAQQLPDD
KAKISSDEKSGYGGSSKRKKVFNLNLCASRDSSVTKDEGEHAHKKLKKDS
GSSTLHNNSGLKVDNEKGGGSNQNHHNGGLASSRNSGSLGDAKEGKLKKV
KLKVGGVTRTIQTKPTSHATKPTSHATKPTSHSASGNGSSTKSAKTSTAP
RPRPKLILQDDSDEDNSPPLDKKSGLQGTPCKDFSNGDNNHSKEEITSGQ
MSGRNGSRKQAERSDRVRKSRRMPKKRDLNGESDDEDDDEIRYLEKLRTS
KVAAGYKDAGEESGIKQRSLSRDLRGGNVKDFGPSKLGKDGKKAKSERGS
QDTDYEEEEEVMSEGEPEAKKKLAKDVTDSPAEGRKEIALTTRQRALLSG
KDASSVSIEFPNGLPPPPPRKQKEKLTEVEQQLKKAEAAERRKLQNEKAA
RESEAEAIRKILGQDSSRKKREDKIKKRQEELAEERAANARTLPPNTIRC
VMGPTGTTVTFSEDMGLPCIFDTRTCSYPPPREKCAGPSCNNPYKYRDSA
TKAPLCSLQCYKAIHEKMDGGNSSGS
Sequence Length:
576
Sequence Checksum:
40570ada6bb8ffe19bdcc89e4bfbdcff
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017382042.1, derives from mRNA, XM_017382042.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017382042.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017382042.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A6X3 ((Putative triadin {ECO:0000313|EMBL:MPA51406.1}))
HSP 1 Score: 553.132 bits (1424), Expect = 0.000e+0
Identity = 361/616 (58.60%), Postives = 433/616 (70.29%), Query Frame = 0
Match: A0A5B7A6X3 ((Putative triadin {ECO:0000313|EMBL:MPA51406.1}))
HSP 1 Score: 553.132 bits (1424), Expect = 0.000e+0
Identity = 361/616 (58.60%), Postives = 433/616 (70.29%), Query Frame = 0
Query: 1 MDESGA-RFEGIASTARKKRSQTSRRPKPESQPLAEGRNKSTLLAQQLPDDKAKISSDEKSGYGGSSKRKKVFNLNLCASRDSSVTKDEGEHAHKKLKKDSGSSTLHNNSGLKVDNEKGGGSNQNH----------------------------------HNGGLASSRNSGSLGDA--KEGKLKKVKLKVGGVTRTIQTKPTSHATKPTSHATKPTSHSASGNGSSTKSAKTSTAPRPRPKLILQDDSDEDNSPPLDKKSGLQGTPCKDFSNGDNNHSKEEITSGQMSGRNGSRKQAERSDRVRKSRRMPKKRDLN-GESDDEDDDEIRYLEKLRTSKVAAGYKDAGEESGIKQRSLSRDLRGG----NVKDFGPSKLGKDGKKAKSERGSQDTDYEEEEEVMSEGEPEAKKKLAKDVTDSPAEGRKEIALTTRQRALLSGKDASSVS----IEFPNGLPPPPPRKQKEKLTEVEQQLKKAEAAERRKLQNEKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELAEERAANARTLPPNTIRCVMGPTGTTVTFSEDMGLPCIFDTRTCSYPPPREKCAGPSCNNPYKYRDSATKAPLCSLQCYKAIHEKMDG 570
M+E G+ RFEGI +T RKKRSQTSRRP+ ESQP E R++S L + DD +++SSDE +G +S+RK FNLN C+SRD S ++ EGE+ HKK+K+D GS +L+ N GL E+G S NH NG SSR+S +GD E K+KKVKLKVG VTRTIQTK S+S G+GSSTKSA +S APRPR KLILQDDSD+D+SPP +KKSGLQG P KDFS + S + + G+M +N S KQ E+S+ VRKS+RMPK+R L+ +D++DDEIRYLEKLRTSK+ G KD E+S KQRS+SR + G N++DFG S+ KDGKK++SER ++DTDYEEE E E + KKK KD D P E ++E LTTRQRALLSGKDASS S IEFPNGLPP PPRKQKEKL+EVEQQLKKAEAA+RR++Q EKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELA+E+AAN L NTIR VMGPTGT V+F +DMGLP IFD++ CSYPPPREKCAGP+C+NPYKYRDS +K PLCSLQCYKAIHEKM+
Sbjct: 1 MEEFGSPRFEGIRNTIRKKRSQTSRRPRSESQPFPETRDRSPLSSTPPSDDVSRVSSDENTGCDSNSRRKD-FNLNQCSSRDFSASRAEGEYPHKKIKEDGGSKSLYCNGGLGSSTEEGQ-SGLNHKRCSEGVIAPANWKSASKVKGSLELQSRTMDHGGRNGESQSSRHSEVIGDGVGNENKVKKVKLKVGSVTRTIQTK----------------SNSHGGSGSSTKSALSSDAPRPRQKLILQDDSDDDHSPPPNKKSGLQGIPWKDFSRSSISSSMVDFSMGKMPEKNASGKQGEKSEPVRKSKRMPKRRVLDKAFDEDDEDDEIRYLEKLRTSKLTVGCKDGEEDSSKKQRSISRVSKSGKYDENLEDFGSSRSSKDGKKSRSERVTEDTDYEEELVSDCEPEDKKKKKPRKDFVDLPGENKRETTLTTRQRALLSGKDASSTSGASLIEFPNGLPPAPPRKQKEKLSEVEQQLKKAEAAQRRRVQVEKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELAQEKAANELILASNTIRWVMGPTGTVVSFPKDMGLPRIFDSKPCSYPPPREKCAGPTCSNPYKYRDSKSKLPLCSLQCYKAIHEKMEA 598
BLAST of XM_017382042.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BMR7 (PAPA-1 domain-containing protein {ECO:0000259|SMART:SM01406})
HSP 1 Score: 547.74 bits (1410), Expect = 0.000e+0
Identity = 323/598 (54.01%), Postives = 409/598 (68.39%), Query Frame = 0
Match: A0A5J5BMR7 (PAPA-1 domain-containing protein {ECO:0000259|SMART:SM01406})
HSP 1 Score: 547.74 bits (1410), Expect = 0.000e+0
Identity = 323/598 (54.01%), Postives = 409/598 (68.39%), Query Frame = 0
Query: 7 RFEGIASTARKKRSQTSRRPKPESQPLAEGRNKSTLLAQQLPDDKAKISSDEKSGYGGSSKRKKVFNLNLCASRDSSVTKDEGEHAHKKLKKDSGSS-TLHNNSGLKVDNEKG-GGSNQNHHNGGLASSRNS-------GSL-------------GDAKEGKLKKVKLKVGGVTRTIQTKPTSHATKPTSHATKPTSHSASGNGSSTKSAKTSTAPRPRPKLILQDDSDEDNSPPLDKKSGLQGTPCKDFSNGDNNHSKEEITSGQMSGRNGSRKQAERSDRVRKSRRMPKKRDLN-GESDDEDDDEIRYLEKLRTSKVAAGYKDAGEESGIKQRSLSRDLRGG----NVKDFGPSKLGKDGKKAKSERGSQDTDYEEEEEVMSEGEPEAKKKL---AKDVTDSPAEGRKEIALTTRQRALLSGKDASSVS----IEFPNGLPPPPPRKQKEKLTEVEQQLKKAEAAERRKLQNEKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELAEERAANARTLPPNTIRCVMGPTGTTVTFSEDMGLPCIFDTRTCSYPPPREKCAGPSCNNPYKYRDSATKAPLCSLQCYKAIHEKMDG 570
RFEGI +T RKKRSQ SRRP+PES P E + S + DD +K+SSDE +G +S RK FNLN CA RD S ++ EGE+ +KK+K++ G S L++N+GL +E+G G N + G+ + N GSL G+++ V + G ++ + TK S+ ASG+ SSTKSA++S APRP+ L+LQ++S++D S P +K GLQG P KDFS G + KE+ + G+M + S KQ E + V KS+RMPK+R L+ +D++DDEIRYLEKL+ SK+AA KD EE +QRS+SR + G N++DFG S+LGKDGKK++S R S DTDYE+E + S+ EPE KKK KD DSP E +E LTTRQRALLSGKDASS S IEFPNGLPP PPRKQKEKL+EVEQQLKK EAA+RR++Q EKAA+ESEAEAIRKILGQDSSRKKREDK+KKR+EELA+E+AAN L +TIR VMGPTGT VTF +DMGLP IFD++ CSYPPPREKCAGP+C+NP+KYRDS +K PLCSLQCYKAIHE+M+
Sbjct: 8 RFEGIGNTIRKKRSQISRRPRPESLPFHENHDWSPSSSTTPSDDVSKVSSDENTGADTNSMRKD-FNLNQCALRDFSTSRAEGEYPNKKIKEEEGGSKLLYSNAGLGDSSEQGRNGLNHKLCSEGVLAPANWKITNKAKGSLELQSRTMDHGGRNGESQGSGYSGVMVDEVGNENKVKKVKLKVGGVTRTIQTKSNSNGASGSVSSTKSARSSDAPRPQQNLVLQENSNDDYSLPPNKNRGLQGIPWKDFSIGSFSFGKEDSSMGKMPEKTTSGKQGENLEPVCKSKRMPKRRVLDTAFGEDDEDDEIRYLEKLKNSKLAAVCKDVDEEPSKRQRSISRVSKSGKDDENLEDFGSSRLGKDGKKSRSGRVSVDTDYEDE--LASDCEPEDKKKKKKPWKDFVDSPRESWRETTLTTRQRALLSGKDASSTSGASLIEFPNGLPPAPPRKQKEKLSEVEQQLKKTEAAQRRRMQVEKAAQESEAEAIRKILGQDSSRKKREDKLKKRREELAQEKAANELMLASSTIRWVMGPTGTVVTFPKDMGLPTIFDSKPCSYPPPREKCAGPTCSNPFKYRDSKSKLPLCSLQCYKAIHERMEA 602
BLAST of XM_017382042.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A473 ((Putative triadin {ECO:0000313|EMBL:MPA51407.1}))
HSP 1 Score: 542.732 bits (1397), Expect = 0.000e+0
Identity = 356/616 (57.79%), Postives = 425/616 (68.99%), Query Frame = 0
Match: A0A5B7A473 ((Putative triadin {ECO:0000313|EMBL:MPA51407.1}))
HSP 1 Score: 542.732 bits (1397), Expect = 0.000e+0
Identity = 356/616 (57.79%), Postives = 425/616 (68.99%), Query Frame = 0
Query: 1 MDESGA-RFEGIASTARKKRSQTSRRPKPESQPLAEGRNKSTLLAQQLPDDKAKISSDEKSGYGGSSKRKKVFNLNLCASRDSSVTKDEGEHAHKKLKKDSGSSTLHNNSGLKVDNEKGGGSNQNH----------------------------------HNGGLASSRNSGSLGDA--KEGKLKKVKLKVGGVTRTIQTKPTSHATKPTSHATKPTSHSASGNGSSTKSAKTSTAPRPRPKLILQDDSDEDNSPPLDKKSGLQGTPCKDFSNGDNNHSKEEITSGQMSGRNGSRKQAERSDRVRKSRRMPKKRDLN-GESDDEDDDEIRYLEKLRTSKVAAGYKDAGEESGIKQRSLSRDLRGG----NVKDFGPSKLGKDGKKAKSERGSQDTDYEEEEEVMSEGEPEAKKKLAKDVTDSPAEGRKEIALTTRQRALLSGKDASSVS----IEFPNGLPPPPPRKQKEKLTEVEQQLKKAEAAERRKLQNEKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELAEERAANARTLPPNTIRCVMGPTGTTVTFSEDMGLPCIFDTRTCSYPPPREKCAGPSCNNPYKYRDSATKAPLCSLQCYKAIHEKMDG 570
M+E G+ RFEGI +T RKKRSQTSRRP+ ESQP E R++S L + DD +++SSDE +G +S+RK FNLN C+SRD S ++ EGE+ HKK+K+D GS +L+ N GL E+G S NH NG SSR+S +GD E K+KKVKLKVG VTRTIQTK SH + SSTKSA +S APRPR KLILQDDSD+D+SPP +KKSGLQG P KDFS + S + + G+M +N S KQ E+S+ VRKS+RMPK+R L+ +D++DDEIRYLEKLRTSK+ G KD E+S KQRS+SR + G N++DFG S+ KDGKK++SER ++DTDYEEE E E + KKK KD D P E ++E LTTRQRALLSGKD SS S IEFPNGLPP PPRKQKEKL+EVEQQLKKAEAA+RR++Q EKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELA+E+AAN L +TIR VMGP GT V+F +DMGLP IFD + CSYPPPRE+CAGPSC NPYKYRDS TK PLCSLQCYKAIH KM+
Sbjct: 1 MEEFGSPRFEGIRNTIRKKRSQTSRRPRSESQPFPETRDRSPLSSTPPSDDVSRVSSDENTGCDSNSRRKD-FNLNQCSSRDFSASRAEGEYPHKKIKEDGGSKSLYCNGGLGSSTEEGQ-SGLNHKRCSEGVIAPANWKSASKVKGSLELQSRTMDHGGRNGESQSSRHSEVIGDGVGNENKVKKVKLKVGSVTRTIQTKSNSHGASGSG--------------SSTKSALSSDAPRPRQKLILQDDSDDDHSPPPNKKSGLQGIPWKDFSRSSISSSMVDFSMGKMPEKNASGKQGEKSEPVRKSKRMPKRRVLDKAFDEDDEDDEIRYLEKLRTSKLTVGCKDGEEDSSKKQRSISRVSKSGKYDENLEDFGSSRSSKDGKKSRSERVTEDTDYEEELVSDCEPEDKKKKKPRKDFVDLPGENKRETTLTTRQRALLSGKDVSSTSGASFIEFPNGLPPAPPRKQKEKLSEVEQQLKKAEAAQRRRVQVEKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELAQEKAANELMLASSTIRWVMGPAGTVVSFPKDMGLPKIFDPKPCSYPPPREECAGPSCTNPYKYRDSKTKLPLCSLQCYKAIHGKMEA 600
BLAST of XM_017382042.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A5K9 ((Putative triadin {ECO:0000313|EMBL:MPA51405.1}))
HSP 1 Score: 538.11 bits (1385), Expect = 0.000e+0
Identity = 356/617 (57.70%), Postives = 425/617 (68.88%), Query Frame = 0
Match: A0A5B7A5K9 ((Putative triadin {ECO:0000313|EMBL:MPA51405.1}))
HSP 1 Score: 538.11 bits (1385), Expect = 0.000e+0
Identity = 356/617 (57.70%), Postives = 425/617 (68.88%), Query Frame = 0
Query: 1 MDESGA-RFEGIASTARKKRSQTSRRPKPESQPLAEGRNKSTLLAQQLPDDKAKISSDEKSGYGGSSKRKKVFNLNLCASRDSSVTKDEGEHAHKKLKK-DSGSSTLHNNSGLKVDNEKGGGSNQNH----------------------------------HNGGLASSRNSGSLGDA--KEGKLKKVKLKVGGVTRTIQTKPTSHATKPTSHATKPTSHSASGNGSSTKSAKTSTAPRPRPKLILQDDSDEDNSPPLDKKSGLQGTPCKDFSNGDNNHSKEEITSGQMSGRNGSRKQAERSDRVRKSRRMPKKRDLN-GESDDEDDDEIRYLEKLRTSKVAAGYKDAGEESGIKQRSLSRDLRGG----NVKDFGPSKLGKDGKKAKSERGSQDTDYEEEEEVMSEGEPEAKKKLAKDVTDSPAEGRKEIALTTRQRALLSGKDASSVS----IEFPNGLPPPPPRKQKEKLTEVEQQLKKAEAAERRKLQNEKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELAEERAANARTLPPNTIRCVMGPTGTTVTFSEDMGLPCIFDTRTCSYPPPREKCAGPSCNNPYKYRDSATKAPLCSLQCYKAIHEKMDG 570
M+E G+ RFEGI +T RKKRSQTSRRP+ ESQP E R++S L + DD +++SSDE +G +S+RK FNLN C+SRD S ++ EGE+ HKK+K+ D GS +L+ N GL E+G S NH NG SSR+S +GD E K+KKVKLKVG VTRTIQTK SH + SSTKSA +S APRPR KLILQDDSD+D+SPP +KKSGLQG P KDFS + S + + G+M +N S KQ E+S+ VRKS+RMPK+R L+ +D++DDEIRYLEKLRTSK+ G KD E+S KQRS+SR + G N++DFG S+ KDGKK++SER ++DTDYEEE E E + KKK KD D P E ++E LTTRQRALLSGKD SS S IEFPNGLPP PPRKQKEKL+EVEQQLKKAEAA+RR++Q EKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELA+E+AAN L +TIR VMGP GT V+F +DMGLP IFD + CSYPPPRE+CAGPSC NPYKYRDS TK PLCSLQCYKAIH KM+
Sbjct: 1 MEEFGSPRFEGIRNTIRKKRSQTSRRPRSESQPFPETRDRSPLSSTPPSDDVSRVSSDENTGCDSNSRRKD-FNLNQCSSRDFSASRAEGEYPHKKIKEEDGGSKSLYCNGGLGSSTEEGQ-SGLNHKRCSEGVIAPANWKSASKVKGSLELQSRTMDHGGRNGESQSSRHSEVIGDGVGNENKVKKVKLKVGSVTRTIQTKSNSHGASGSG--------------SSTKSALSSDAPRPRQKLILQDDSDDDHSPPPNKKSGLQGIPWKDFSRSSISSSMVDFSMGKMPEKNASGKQGEKSEPVRKSKRMPKRRVLDKAFDEDDEDDEIRYLEKLRTSKLTVGCKDGEEDSSKKQRSISRVSKSGKYDENLEDFGSSRSSKDGKKSRSERVTEDTDYEEELVSDCEPEDKKKKKPRKDFVDLPGENKRETTLTTRQRALLSGKDVSSTSGASFIEFPNGLPPAPPRKQKEKLSEVEQQLKKAEAAQRRRVQVEKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELAQEKAANELMLASSTIRWVMGPAGTVVSFPKDMGLPKIFDPKPCSYPPPREECAGPSCTNPYKYRDSKTKLPLCSLQCYKAIHGKMEA 601
BLAST of XM_017382042.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C1D1 (PAPA-1 domain-containing protein {ECO:0000259|SMART:SM01406})
HSP 1 Score: 526.939 bits (1356), Expect = 8.913e-180
Identity = 346/617 (56.08%), Postives = 424/617 (68.72%), Query Frame = 0
Match: A0A5J5C1D1 (PAPA-1 domain-containing protein {ECO:0000259|SMART:SM01406})
HSP 1 Score: 526.939 bits (1356), Expect = 8.913e-180
Identity = 346/617 (56.08%), Postives = 424/617 (68.72%), Query Frame = 0
Query: 1 MDESGA-RFEGIASTARKKRSQTSRRPKPESQPLAEGRNKSTLLAQQLPDDKAKISSDEKSGYGGSSKRKKVFNLNLCASRDSSVTKDEGEHAHKKLKKDSGSSTLHNNSGLKVDNEKGGGSNQNH-------------------------------HNGGLASSRNSGSL-----GDAKEGKLKKVKLKVGGVTRTIQTKPTSHATKPTSHATKPTSHSASGNGSSTKSAKTSTAPRPRPKLILQDDSDEDNSPPLDKKSGLQGTPCKDFSNGDNNHSKEEITSGQMSGRNGSRKQAERSDRVRKSRRMPKKRDLNGESDDEDDDE-IRYLEKLRTSKVAAGYKDAGEESGIKQRSLSRDLRGGN----VKDFGPSKLGKDGKKAKSERGSQDTDYEEEEEVMSEGEPEAKKKLAKDVTDSPAEGRKEIALTTRQRALLSGKDASSVS-----IEFPNGLPPPPPRKQKEKLTEVEQQLKKAEAAERRKLQNEKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELAEERAANARTLPPNTIRCVMGPTGTTVTFSEDMGLPCIFDTRTCSYPPPREKCAGPSCNNPYKYRDSATKAPLCSLQCYKAIHEKMDG 570
M+E G+ RFEGI +T RKKRSQTSRRP+PESQP E ++S L + DD ++ SSDE +G +S+RK FNLN C+SRD + ++ EGE+ HKK+K+ GS L++ GL E G S NH H G + S++S L G E K+KKVKLKVG VTRTIQTK SH + SSTKSA++S APRPR K+ILQ++SD+D+SPP DKKSGLQG P KDFS ++ K+ + G+M + + KQ E+S+ VRKS+R+PK+R L+GE D++D+D+ IRYLEKL+TSK+ G K ++S KQRS+SR + GN ++DFG S+ KDGKK++SER S+DTDYEEE E E + KKK KD+ D P E ++E LTTRQRALLSGKDASS S IEFPNGLPP PPRKQKEKL+EVEQQLKK+EAA+RR++Q EKAARESEAEAIRKILGQDSSRKKREDKIKKR EELA+E+AANA L NTIR VMGP GT V+F EDMGLP IFD++ CSYPPPREKCAGPSC+N YKYRDS T PLCSLQCYKAIH KM+
Sbjct: 1 MEEFGSPRFEGIRNTIRKKRSQTSRRPRPESQPFPETCDRSPLSSTPPSDDGSRASSDENNGCDANSRRKD-FNLNQCSSRDYTASRAEGEYPHKKIKEVRGSK-LYSIGGLGNSTE-DGHSGLNHKRCSEGVLAPANWKSSSKVKGRLELQLRTGDHGGRNSESQSSRHLEVIRDGVENENKVKKVKLKVGSVTRTIQTKSNSHGASGSG--------------SSTKSAQSSDAPRPRQKMILQENSDDDHSPP-DKKSGLQGIPWKDFSRNSSSLGKD-FSMGKMPEKKATGKQGEKSEPVRKSKRVPKRRVLDGEFDEDDEDDEIRYLEKLKTSKLTVGCKYVEQDSSKKQRSISRVFKSGNYDENLEDFGSSRSIKDGKKSRSERESEDTDYEEELVSDCEPEDKKKKKPRKDLVDLPKENKRETTLTTRQRALLSGKDASSTSGGASLIEFPNGLPPAPPRKQKEKLSEVEQQLKKSEAAQRRRMQVEKAARESEAEAIRKILGQDSSRKKREDKIKKRLEELAQEKAANA--LTSNTIRWVMGPAGTVVSFPEDMGLPSIFDSKPCSYPPPREKCAGPSCSNTYKYRDSKTNLPLCSLQCYKAIHGKMEA 596
BLAST of XM_017382042.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0H860 ((HIT zinc finger and PAPA-1-like domain-containing protein {ECO:0000313|EMBL:GFZ19297.1}))
HSP 1 Score: 525.013 bits (1351), Expect = 5.900e-179
Identity = 339/621 (54.59%), Postives = 417/621 (67.15%), Query Frame = 0
Match: A0A7J0H860 ((HIT zinc finger and PAPA-1-like domain-containing protein {ECO:0000313|EMBL:GFZ19297.1}))
HSP 1 Score: 525.013 bits (1351), Expect = 5.900e-179
Identity = 339/621 (54.59%), Postives = 417/621 (67.15%), Query Frame = 0
Query: 1 MDESGA-RFEGIASTARKKRSQTSRRPKPESQPLAEGRNKSTLLAQQLPDDKAKISSDEKSGYGGSSKRKKVFNLNLCASRDSSVTKDEGEHAHKKLKKDSGSSTLHNNSGLKVDNEKGGGSNQNHHNGGLA------SSRNSGSL----------------------------GDAKEGKLKKVKLKVGGVTRTIQTKPTSHATKPTSHATKPTSHSASGNGSSTKSAKTSTAPRPRPKLILQDDSDEDNSPPLDKKSGLQGTPCKDFSNGDNNHSKEEITSGQMSGRNGSRKQAERSDRVRKSRRMPKKRDLNGESDDEDDDE-IRYLEKLRTSKVAAGYKDAGEESGIKQRSLSR---DLRGGNV-KDFGPSKLGKDGKK-AKSERGSQDTDYEEEEEVMSEGEPEAKKKLAK--DVTDSPAEGRKEIALTTRQRALLSGKDASSVS----IEFPNGLPPPPPRKQKEKLTEVEQQLKKAEAAERRKLQNEKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELAEERAANARTLPPNTIRCVMGPTGTTVTFSEDMGLPCIFDTRTCSYPPPREKCAGPSCNNPYKYRDSATKAPLCSLQCYKAIHEKMDGGNSS 574
M+E G RFE I + RKKRSQ SRRP+PES +E +S L + DD +K SSDE +G G ++ R+K+FNLN CA RD+ T GE+ HKK+KKD GSS + + VD G +N+ G A +++ GS G + LKKVKLKVGGVTRTIQ K SH + SSTK ++TS APR + K+ILQD+SD+D PPL KKS +QG P KDFS G + ++ +G+M +N S + E+S+ VRKS+R+ K+R L+GE D+ED+D+ IRYLEKL+ SKVAAG KD +ES KQ+ ++R ++ G V +DF S+ KDGKK ++SER S+DTDYEEEEE+MS+GEP KKK D TD P E ++E+ LTTRQRAL SGKDASSVS +EFPNGLPP P RKQKEKL+EVEQQLKKAEAA+RR++Q EKAARESEAEAIRKILGQDSSRKKREDKIKKRQEE+A+E+AANA L NTIR VMGPTGT VTFS+DMGLP IF+ + SYPPPREKCAGPSC NPYKYRDS +K PLCSL CYKAI+EKM +S
Sbjct: 1 MEEFGGPRFESIGNAIRKKRSQISRRPRPESLKFSESLARSPLSSTPPSDDVSKNSSDEITG-GDANSRRKLFNLNQCALRDN--TSRAGEYPHKKIKKD-GSSYGYGDLEDSVDKGGSGLNNRQCSEGVFAPANWKSTNKTKGSFELQSTTADIHGGRNGESESSWHSRVNGHGVGNDTNLKKVKLKVGGVTRTIQAKSNSHGASGSG--------------SSTKDSRTSDAPRSQLKIILQDNSDDDAPPPLVKKSFIQGIPWKDFSGGSS-----DLGTGKMPEKNASANRGEKSEPVRKSKRVTKRRVLDGEFDEEDEDDEIRYLEKLKISKVAAGSKDFEQESSKKQQRIARVSKSVKHGEVSEDFVSSRSSKDGKKKSQSERRSEDTDYEEEEELMSDGEPGGKKKKKPRNDSTDLPIENKRELGLTTRQRALFSGKDASSVSGTSLVEFPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRRMQVEKAARESEAEAIRKILGQDSSRKKREDKIKKRQEEIAQEKAANALVLQSNTIRLVMGPTGTVVTFSKDMGLPSIFNPKPHSYPPPREKCAGPSCTNPYKYRDSKSKLPLCSLHCYKAINEKMQAETTS 598
BLAST of XM_017382042.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0G167 ((HIT zinc finger and PAPA-1-like domain-containing protein {ECO:0000313|EMBL:GFZ04524.1}))
HSP 1 Score: 518.079 bits (1333), Expect = 2.296e-176
Identity = 340/608 (55.92%), Postives = 412/608 (67.76%), Query Frame = 0
Match: A0A7J0G167 ((HIT zinc finger and PAPA-1-like domain-containing protein {ECO:0000313|EMBL:GFZ04524.1}))
HSP 1 Score: 518.079 bits (1333), Expect = 2.296e-176
Identity = 340/608 (55.92%), Postives = 412/608 (67.76%), Query Frame = 0
Query: 5 GARFEGIASTARKKRSQTSRRPKPESQPLAEGRNKSTLLAQQLPDDKAKISSDEKSGYGGSSKRKKVFNLNLCASRDSSVTKDEGEHAHKKLKKDSGSSTLHNNSGLKVDNEKGGGSNQNHH------------------------------NGGLASSRNS--GSLGDAKEGKLKKVKLKVGGVTRTIQTKPTSHATKPTSHATKPTSHSASGNGSSTKSAKTSTAPRPRPKLILQDDSDEDNSPPLDKKSGLQGTPCKDFSNGDNNHSKEEITSGQMSGRNGSRKQAERSDRVRKSRRMPKKRDLNGESDDEDDDE-IRYLEKLRTSKVAAGYKDAGEESGIKQR--SLSRDLRGGNV-KDFGPSKLGKDGKK-AKSERGSQDTDYEEEEEVMSEGEPEAKKKLAK--DVTDSPAEGRKEIALTTRQRALLSGKDASSVS----IEFPNGLPPPPPRKQKEKLTEVEQQLKKAEAAERRKLQNEKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELAEERAANARTLPPNTIRCVMGPTGTTVTFSEDMGLPCIFDTRTCSYPPPREKCAGPSCNNPYKYRDSATKAPLCSLQCYKAIHEKMD 569
G RFE I +T RKKRSQTSRRP+PES +E ++S + + DD K SSDE +G G +S R+K+FNLN CA RD+ T GE+ HKK+KKD GSS + + VD KGG N NG SS +S G + LKKVKLKVGGVTRTIQTK SHA + SSTK ++TS APR + K+ILQD+SD+D+ PPL KKS ++G P KDFS HS ++ +G+M +N S + E+S VRKS+R+PKKR L+ E DDED+D+ IRYLEKL+ SKVAAG KD EES KQR +S+ + + +DF S+ KDGKK ++SERGS+DTDY+ +EE+MS+ EP KKK D DSP E ++ + LTTRQRALLS KDASSVS +EFPNGLPP P RKQKEKL+EVEQQLKKAEAA+RR++Q EKAARESEAEAI+KILGQDSSRKKREDKIKKRQEE+A+E+AANA L NTIR VMGPTGT VTFS+DMGLP IF+ + SYPPPREKCAGPSC NPYKYRDS +K PLCSL CYKAI+EKM+
Sbjct: 6 GPRFESIGNTIRKKRSQTSRRPRPESLQFSESLDRSPMSSTPRSDDVCKNSSDEITG-GDTSSRRKLFNLNQCALRDT--TSRAGEYPHKKIKKD-GSSYGYGDLEDSVD--KGGRELNNKQCSEGVFGPANWKSTNKTKRSFEMQSTTADINGESQSSWHSRVNGHGAGNDTNLKKVKLKVGGVTRTIQTKSNSHAASGSG--------------SSTKDSRTSDAPRSQHKMILQDNSDDDDPPPLVKKSFMRGIPWKDFSG----HS-SDLGTGKMPEKNSSANRGEKSVPVRKSKRVPKKRVLDREFDDEDEDDEIRYLEKLKISKVAAGSKDFEEESSKKQRITRVSKSAKHDEISEDFVNSRSSKDGKKKSQSERGSEDTDYDNDEELMSDCEPGGKKKKKPRNDSIDSPTEKKRALGLTTRQRALLSSKDASSVSGTSVVEFPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRRMQVEKAARESEAEAIKKILGQDSSRKKREDKIKKRQEEMAQEKAANALVLASNTIRLVMGPTGTVVTFSKDMGLPSIFNPKPHSYPPPREKCAGPSCTNPYKYRDSKSKLPLCSLHCYKAINEKME 588
BLAST of XM_017382042.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A200PWC7 ((INO80 complex subunit B-like conserved region {ECO:0000313|EMBL:OVA02523.1}))
HSP 1 Score: 514.227 bits (1323), Expect = 6.738e-175
Identity = 319/617 (51.70%), Postives = 396/617 (64.18%), Query Frame = 0
Match: A0A200PWC7 ((INO80 complex subunit B-like conserved region {ECO:0000313|EMBL:OVA02523.1}))
HSP 1 Score: 514.227 bits (1323), Expect = 6.738e-175
Identity = 319/617 (51.70%), Postives = 396/617 (64.18%), Query Frame = 0
Query: 8 FEGIASTARKKRSQTSRRPKPESQPLAEGRNKSTLLAQQLPDDKAKISSDEKSGYGGSSKRKKVFNLNLCASRDSSVTKDEGEHAHKKLKKDSGS----STLHNNSGLKVDNEKG-GGSNQNHHNGGLASSRNSGSL----------------------------------GDAKEGKLKKVKLKVGGVTRTIQTKPTSHATKPTSHATKPTSHSASGNGSSTKSAKTSTAPRPRPKLILQDDSDEDNSPPLDKKSGLQGTPCKDFSNGDNNHSKEEITSGQMSGRNGSRKQAERSDRVRKSRRMPKKRDLNGESDDEDDD-EIRYLEKLRTSK----VAAGYKDAGEESGIKQRSLSR--DLRGGNVKDF------GPSKLGKDGKKAKSERGSQDTDYEEEEEVMSEGEPEAK-KKLAKDVTDSPAEGRKEIALTTRQRALLSGKDASSVS----IEFPNGLPPPPPRKQKEKLTEVEQQLKKAEAAERRKLQNEKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELAEERAANARTLPPNTIRCVMGPTGTTVTFSEDMGLPCIFDTRTCSYPPPREKCAGPSCNNPYKYRDSATKAPLCSLQCYKAIHEK 567
F+ + + RKKRS SRRP+P+S + D+ +K+SSDE +GY SS+RK+ FNLN ASR SSV K EGE ++KK++KD GS +NN G + +E+G G++ + G+ + N S+ G E KL+KVKLKVGGVTRTI HA K ++ A GSS K++++S PRPRPKLILQD+SD+D SPP +K SGLQG P KDFS KE+ + +M E SD VRKS+R+PK+R L+G +D D+D EIRYLE+LRTSK Y+D EE KQR LSR +R N +DF G S+ GK KK++SER S+DT+Y +EE+ S+ EPEAK KK KD DS EG+KE+ LTTRQRAL SG+D SS S IEFPNGLPP PPRKQKEKL+EVEQQLKKAEAA+RR++Q EKAARESEAEAIRKILGQDSSRKKREDKIKKR++ELA+E+AANA TL NT+R + P GTTV F ++GLP +FD++ SYPPPREKCAGPSC NPYKYRDS TK PLCSL CYKA+ E+
Sbjct: 9 FDNVGNAVRKKRSTASRRPRPDS-------------STPPSDNVSKVSSDENTGYDTSSRRKE-FNLNQFASRVSSVNKSEGETSYKKIRKDGGSFGELHGFYNNGGSRGSSEQGRSGTDFKRCSEGVLAPANWKSMSTVKENFQSQSRKPESIMGSGKNVETSGHGVVLDGTGNENKLRKVKLKVGGVTRTI------HA--------KSSADDAPSGGSSMKTSRSSDVPRPRPKLILQDNSDDDLSPPPEKVSGLQGVPWKDFSRDGFGLGKEDSSKNKM---------PEESDPVRKSKRVPKRRVLDGAFNDGDEDAEIRYLERLRTSKGSMDCGVEYEDDEEEGSKKQRRLSRVSKIRMVN-EDFKDDLECGSSRSGK--KKSRSERASEDTEY-VDEELASDDEPEAKRKKPKKDSVDSMMEGKKEMTLTTRQRALQSGRDISSASGASLIEFPNGLPPAPPRKQKEKLSEVEQQLKKAEAAQRRRMQVEKAARESEAEAIRKILGQDSSRKKREDKIKKRRDELAQEKAANAMTLASNTVRWISSPAGTTVIFPTEVGLPSLFDSKPISYPPPREKCAGPSCTNPYKYRDSKTKLPLCSLPCYKAVQEQ 584
BLAST of XM_017382042.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C284 (PAPA-1 domain-containing protein {ECO:0000259|SMART:SM01406})
HSP 1 Score: 512.686 bits (1319), Expect = 7.466e-174
Identity = 322/623 (51.69%), Postives = 408/623 (65.49%), Query Frame = 0
Match: A0A5B7C284 (PAPA-1 domain-containing protein {ECO:0000259|SMART:SM01406})
HSP 1 Score: 512.686 bits (1319), Expect = 7.466e-174
Identity = 322/623 (51.69%), Postives = 408/623 (65.49%), Query Frame = 0
Query: 5 GARFEGIASTARKKRSQTSRRPKPESQPLAEGRNKSTLLAQQLPDDKAKISSDEKSGYGGSSKRKKVFNLNLCASRDSSVTKDEGEHAHKKLKKD----SGSSTLHNNS------------------------------GLKV-----DNEKGGGSNQNHHNG--GLASSRNSGSLGDAKEGKLKKVKLKVGGVTRTIQTKPTSHATKPTSHATKPTSHSASGNGSSTKSAKTSTAPRPRPKLILQDDSDEDNSPPLDKKSGLQGTPCKDFSNGDNNHSKEEITSGQMSGRNGSRKQAERSDRVRKSRRMPKKRDL--NGESDDEDDDEIRYLEKLRTSKVAAGYKDAGE---ESGI-KQRSLSRDLR-----GGNVK--DFGPSKLGKDGKKAKSERGSQDTDYEEEEEVMSEGEPEA-KKKLAKDVTDSPAEGRKEIALTTRQRALLSGKDASSVS----IEFPNGLPPPPPRKQKEKLTEVEQQLKKAEAAERRKLQNEKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELAEERAANARTLPPNTIRCVMGPTGTTVTFSEDMGLPCIFDTRTCSYPPPREKCAGPSCNNPYKYRDSATKAPLCSLQCYKAIHEKM 568
G F + T RKKRS +SRRP+ +SQPL + R+ S+L + D+ +K SSD+ +G+G +S++K++ NLN C+SR SS E E A K +D S + + +NS GL++ D + G + H +G GLAS G + K KKVKLKVGGVTRTI H T + ++ G SSTKS+ +S APRPR +LILQD SDED SP DK SGL G P KDFS + K + + G+M+ + S KQ+++ + VRKS+R+PK+R L + D+DD+EIRYLEKL+T+KVAA Y E E G K R +SR L+ G NV D+G S+ ++ KK++S R +DTDY EEEE++S+GEPE +KK K+ D + ++E+A+TTRQRAL +GKD SS S IEFPNGLPP PPRKQKEKL+EVEQQLKKAEAA+RR++Q EKAARESEAEAIRKILGQDSSRKKREDK+KKRQEELA+ERAANA TL NT+R VMGP+GT VTF ++GLP IFDT+ CSYPPPREKCAGPSC NPYKYRDS +K PLCSLQCYKA+HEKM
Sbjct: 6 GFGFGDVNKTVRKKRSNSSRRPRNDSQPLPDYRDNSSLSSTPPSDNASKASSDDNTGHGTNSQKKEL-NLNQCSSRASSTNLAEAETALKVNNEDGLGESSDALVKSNSERKHSGIDSKRSSEGALAPVNWKSTNKVKEGLELQSRTRDTKSSGRISGTHSSGQSGLASD------GQGNDNKFKKVKLKVGGVTRTI-------------HPTSTSDGASLGGSSSTKSSHSSDAPRPRQRLILQDMSDEDRSPSPDKGSGLHGVPWKDFSRSGFSVRKVDSSRGKMAEESVSIKQSDKHEPVRKSKRVPKRRLLDGAFDDGDDDDEEIRYLEKLKTTKVAADYGAENEYEDEVGTKKHRKISRVLKKNIDGGYNVDAGDYGSSRSAREAKKSRSGRSYEDTDYMEEEEMVSDGEPETNRKKQRKEFIDVLGDSKREMAVTTRQRALQTGKDISSSSGASLIEFPNGLPPAPPRKQKEKLSEVEQQLKKAEAAQRRRMQVEKAARESEAEAIRKILGQDSSRKKREDKMKKRQEELAQERAANAMTLTSNTVRWVMGPSGTVVTFPNELGLPSIFDTKPCSYPPPREKCAGPSCTNPYKYRDSKSKLPLCSLQCYKALHEKM 608
BLAST of XM_017382042.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6P5L5 ((INO80 complex subunit B like {ECO:0000313|EMBL:PSR85940.1}))
HSP 1 Score: 510.76 bits (1314), Expect = 2.329e-173
Identity = 337/621 (54.27%), Postives = 414/621 (66.67%), Query Frame = 0
Match: A0A2R6P5L5 ((INO80 complex subunit B like {ECO:0000313|EMBL:PSR85940.1}))
HSP 1 Score: 510.76 bits (1314), Expect = 2.329e-173
Identity = 337/621 (54.27%), Postives = 414/621 (66.67%), Query Frame = 0
Query: 1 MDESGA-RFEGIASTARKKRSQTSRRPKPESQPLAEGRNKSTLLAQQLPDDKAKISSDEKSGYGGSSKRKKVFNLNLCASRDSSVTKDEGEHAHKKLKKDSGSSTLHNNSGLKVDNEKGGGSNQNHHNGGLA------SSRNSGSL----------------------------GDAKEGKLKKVKLKVGGVTRTIQTKPTSHATKPTSHATKPTSHSASGNGSSTKSAKTSTAPRPRPKLILQDDSDEDNSPPLDKKSGLQGTPCKDFSNGDNNHSKEEITSGQMSGRNGSRKQAERSDRVRKSRRMPKKRDLNGESDDEDDDE-IRYLEKLRTSKVAAGYKDAGEESGIKQRSLSR---DLRGGNV-KDFGPSKLGKDGKK-AKSERGSQDTDYEEEEEVMSEGEPEAKKKLAK--DVTDSPAEGRKEIALTTRQRALLSGKDASSVS----IEFPNGLPPPPPRKQKEKLTEVEQQLKKAEAAERRKLQNEKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELAEERAANARTLPPNTIRCVMGPTGTTVTFSEDMGLPCIFDTRTCSYPPPREKCAGPSCNNPYKYRDSATKAPLCSLQCYKAIHEKMDGGNSS 574
M+E G RFE I + RKKRSQ SRRP+PES +E +S L + DD +K SSDE +G G ++ R+K+FNLN CA RD+ T GE+ HKK+KKD GSS + + VD G +N+ G A +++ GS G + LKKVKLKVGGVTRTIQ K SH + SSTK ++TS APR + K+ILQD+SD+D+ PPL KKS +QG P KDFS G + ++ G+M +N S + E+S+ VRKS+RM K+R L+GE D+ED+D+ IRYLEKL+ SKVAAG KD EES KQ+ ++R ++ G + +DF S+ KDGKK +SER S+DTDYEEEEE+MS+GEP KKK D + E ++E+ LTTRQRAL SGKDASSVS +EFPNGLPP P RKQKEKL+EVEQQLKKAEAA+RR++Q EKAARESEAEAIRKILGQDSSRKKREDKIKKRQEE+A+E+AANA L NTIR VMGPTGT VTFS+DMGLP IF+ + SYPPPREKCAGPSC NPYKYRDS +K PLCSL CYKAI+EKM +S
Sbjct: 1 MEEFGGPRFESIGNAIRKKRSQISRRPRPESLKFSESLARSPLSSTPPSDDVSKNSSDEITG-GDTNSRRKLFNLNQCALRDT--TSRAGEYLHKKIKKD-GSSYGYGDLEDSVDKGGSGLNNRQCSEGVFAPANWKSTNKTKGSFELQSTTADIHGGRNGESERSWHSRVNGHGVGNDTNLKKVKLKVGGVTRTIQAKSNSHGASGSG--------------SSTKDSRTSDAPRSQLKMILQDNSDDDDPPPLVKKSFIQGIPWKDFSGGSS-----DLGMGKMPEKNASANRGEKSEPVRKSKRMTKRRVLDGEFDEEDEDDEIRYLEKLKISKVAAGSKDFEEESSKKQQRIARVSKSVKHGEISEDFVSSRSSKDGKKKTQSERRSEDTDYEEEEELMSDGEPGGKKKKKPRNDSIELTIENKRELGLTTRQRALFSGKDASSVSGTSLVEFPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRRMQVEKAARESEAEAIRKILGQDSSRKKREDKIKKRQEEIAQEKAANALVLASNTIRLVMGPTGTVVTFSKDMGLPSIFNPKPHSYPPPREKCAGPSCTNPYKYRDSKSKLPLCSLHCYKAINEKMQAETTS 598
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7A6X3 | E-Value: 0.000e+0, PID: 58.60 | (Putative triadin {ECO:0000313|EMBL:MPA51406.1})[more] |
| A0A5J5BMR7 | E-Value: 0.000e+0, PID: 54.01 | PAPA-1 domain-containing protein {ECO:0000259|SMAR... [more] |
| A0A5B7A473 | E-Value: 0.000e+0, PID: 57.79 | (Putative triadin {ECO:0000313|EMBL:MPA51407.1})[more] |
| A0A5B7A5K9 | E-Value: 0.000e+0, PID: 57.70 | (Putative triadin {ECO:0000313|EMBL:MPA51405.1})[more] |
| A0A5J5C1D1 | E-Value: 8.913e-180, PID: 56.08 | PAPA-1 domain-containing protein {ECO:0000259|SMAR... [more] |
| A0A7J0H860 | E-Value: 5.900e-179, PID: 54.59 | (HIT zinc finger and PAPA-1-like domain-containing... [more] |
| A0A7J0G167 | E-Value: 2.296e-176, PID: 55.92 | (HIT zinc finger and PAPA-1-like domain-containing... [more] |
| A0A200PWC7 | E-Value: 6.738e-175, PID: 51.70 | (INO80 complex subunit B-like conserved region {EC... [more] |
| A0A5B7C284 | E-Value: 7.466e-174, PID: 51.69 | PAPA-1 domain-containing protein {ECO:0000259|SMAR... [more] |
| A0A2R6P5L5 | E-Value: 2.329e-173, PID: 54.27 | (INO80 complex subunit B like {ECO:0000313|EMBL:PS... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |