XM_017387626.1

Resource Type: 
Polypeptide
Name: 
XM_017387626.1
Identifier: 
XM_017387626.1-protein
Sequence: 
MSLRPNARTEVRRSKYKVAVDADEGRRRREDNMVEIRKNRREENLQKKRR
EGVQAPQLENLSATAVQIEQRLESLPAMVAGVFSEDGSLRLEATSHFRKL
LSIERNPPIEEVIKSGVVPRFVEFLGRDDYPQLQFEAAWALTNIASGTSD
HTKVVIDHGAIPVFIRLLTSASDDVREQAVWALGNVAGDSPKCRDLVLAH
GALMPLLAQFNEHAKISMLRNATWTLSNFCRGKPQPHFEQTKPALPALAK
LITSNDEEVLTDACWAFSYLSDGTNDKIQAVIDSGVCGRLVELLYHPSSS
VLIPALRTVGNIVTGDDMQTQVIIQHQALPCLLNLLTNNHKKSIKKEACW
TISNITAGNSEQIQAVIEAGIIGPLVQLLGTAEFEIKKEAAWAVSNATSG
GTHEQLKFLVSQGCIKPLCDLLNCPDPRIVTVALEGLENILKVGEAEKNL
GHTGDVNVYAQLIDEAEGLEKIENLQSHDNNEIYEKSVKLLETYWLEDDD
EQLPGGDTAQSELKFAGNGPSVPSGGFSFS
Sequence Length: 
530
Sequence Checksum: 
e62e4a4b4fcef7cde67c79d2d5d29cfd
View location in JBrowse: 
DCARv2_Chr3:46220061..46224682-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017387626.1, derives from mRNA, XM_017387626.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017387626.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017387626.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5BEL7 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})

HSP 1 Score: 931.398 bits (2406), Expect = 0.000e+0
Identity = 457/529 (86.39%), Postives = 502/529 (94.90%), Query Frame = 0
 
Query:    1 MSLRPNARTEVRRSKYKVAVDADEGRRRREDNMVEIRKNRREENLQKKRREGVQAPQLENLSATAVQIEQRLESLPAMVAGVFSEDGSLRLEATSHFRKLLSIERNPPIEEVIKSGVVPRFVEFLGRDDYPQLQFEAAWALTNIASGTSDHTKVVIDHGAIPVFIRLLTSASDDVREQAVWALGNVAGDSPKCRDLVLAHGALMPLLAQFNEHAKISMLRNATWTLSNFCRGKPQPHFEQTKPALPALAKLITSNDEEVLTDACWAFSYLSDGTNDKIQAVIDSGVCGRLVELLYHPSSSVLIPALRTVGNIVTGDDMQTQVIIQHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNSEQIQAVIEAGIIGPLVQLLGTAEFEIKKEAAWAVSNATSGGTHEQLKFLVSQGCIKPLCDLLNCPDPRIVTVALEGLENILKVGEAEKNLGHTGDVNVYAQLIDEAEGLEKIENLQSHDNNEIYEKSVKLLETYWLEDDDEQLPGGDTAQSELKFAGNGPSVPSGGFSF 529
            MSLRPNARTEVRRS+YKVAVDADEGRRRREDNMVEIRKNRREE+L KKRREG+QA Q    ++TA Q+E++LE LPAMVAGV+S+DG++RLEAT+HFRKLLSIERNPPIEEVI+SGVVPRF+EFLGRDDYPQLQFEAAWALTNIASGTS+HTKVVI+HGAIP+F+RLL S+SDDVREQAVWALGNVAGDSPKCRDLVL+H AL+PLLAQFNE+AK+SMLRNATWTLSNFCRGKPQPHF+QTKPALPALA+LI SNDEEVLTDACWA SYLSDGTNDKIQAVID+GVC RLVELL HPS+SVLIPALRTVGNIVTGDDMQTQVIIQHQAL CLLNLLTNN KKSIKKEACWTISNITAGN EQIQAVIEAGII PL++LL  AEF+IKKEAAWAVSNATSGGT+EQ+KFLV+QGCIKPLCDLL CPD RI+TV LEGLENILKVGE EK LG+TGDVNVYAQLIDEAEGLEKIENLQSHDNNEIYEK+VK+LETYWLE+DDEQLP GDT+QS L+F+G+GP+VPSGGF+F
Sbjct:    1 MSLRPNARTEVRRSRYKVAVDADEGRRRREDNMVEIRKNRREESLLKKRREGLQAHQF---NSTAAQLEKKLEGLPAMVAGVWSDDGNMRLEATTHFRKLLSIERNPPIEEVIQSGVVPRFIEFLGRDDYPQLQFEAAWALTNIASGTSEHTKVVIEHGAIPIFVRLLASSSDDVREQAVWALGNVAGDSPKCRDLVLSHDALVPLLAQFNENAKLSMLRNATWTLSNFCRGKPQPHFDQTKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCPRLVELLLHPSASVLIPALRTVGNIVTGDDMQTQVIIQHQALLCLLNLLTNNQKKSIKKEACWTISNITAGNKEQIQAVIEAGIIAPLIKLLDNAEFDIKKEAAWAVSNATSGGTNEQIKFLVNQGCIKPLCDLLVCPDARIITVCLEGLENILKVGETEKALGNTGDVNVYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDEQLPMGDTSQSGLEFSGSGPAVPSGGFNF 526
[Close]
BLAST of XM_017387626.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834L6D4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7119860.1}))

HSP 1 Score: 930.628 bits (2404), Expect = 0.000e+0
Identity = 450/531 (84.75%), Postives = 489/531 (92.09%), Query Frame = 0
 
Query:    1 MSLRPNARTEVRRSKYKVAVDADEGRRRREDNMVEIRKNRREENLQKKRREGVQAPQLENLSATAVQIEQRLESLPAMVAGVFSEDGSLRLEATSHFRKLLSIERNPPIEEVIKSGVVPRFVEFLGRDDYPQLQFEAAWALTNIASGTSDHTKVVIDHGAIPVFIRLLTSASDDVREQAVWALGNVAGDSPKCRDLVLAHGALMPLLAQFNEHAKISMLRNATWTLSNFCRGKPQPHFEQTKPALPALAKLITSNDEEVLTDACWAFSYLSDGTNDKIQAVIDSGVCGRLVELLYHPSSSVLIPALRTVGNIVTGDDMQTQVIIQHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNSEQIQAVIEAGIIGPLVQLLGTAEFEIKKEAAWAVSNATSGGTHEQLKFLVSQGCIKPLCDLLNCPDPRIVTVALEGLENILKVGEAEKNLGHTGDVNVYAQLIDEAEGLEKIENLQSHDNNEIYEKSVKLLETYWLEDDDEQLPGGDTAQSELKFAGNG-PSVPSGGFSFS 530
            MSLRPNARTEVRRSKYKVAVDA+EGRRRREDNMVEIRKN+REE+L KKRREG+Q  Q    +    QIE++LESLPAM+AGV+S+D SL+LEAT+ FRKLLSIERNPPIEEVI+SGVVPRFVEFL RDDYP LQFEAAWALTNIASGTS++TKVVIDHGA+P+F+RLL S SDDVREQAVWALGN+AGDSPKCRDLVL  GALMPLLAQFNEHAK+SMLRNATWTLSNFCRGKPQP FEQTKPALPALA+LI SNDEEVLTDACWA SYLSDGTNDKIQAVI++GVC RLVELL HPS SVLIPALRTVGNIVTGDD+QTQVII HQALP L+NLLTNN+KKSIKKEACWTISNITAGN  QIQAVIEAGI+ PLVQLL  AEFEIKKEAAWA+SNATSGGT+EQ+KFLVSQGCIKPLCDLL CPDPRIVTV LEGLENILKVGEAEKNLG++GDVN YAQLIDEAEGLEKIENLQSHDNNEIYEK+VK+LETYWLED+DEQLP GD +QS  +F GN  P+VPSGGF+FS
Sbjct:    1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQTQQFPT-AVNVSQIEKKLESLPAMIAGVWSDDSSLQLEATTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDYPNLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVRLLGSPSDDVREQAVWALGNIAGDSPKCRDLVLTCGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPQFEQTKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDIQTQVIIDHQALPFLVNLLTNNYKKSIKKEACWTISNITAGNKGQIQAVIEAGIMAPLVQLLQNAEFEIKKEAAWAISNATSGGTNEQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGDVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDEQLPAGDASQSGFRFGGNELPAVPSGGFNFS 530
[Close]
BLAST of XM_017387626.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BD68 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})

HSP 1 Score: 926.006 bits (2392), Expect = 0.000e+0
Identity = 447/530 (84.34%), Postives = 490/530 (92.45%), Query Frame = 0
 
Query:    1 MSLRPNARTEVRRSKYKVAVDADEGRRRREDNMVEIRKNRREENLQKKRREGVQAPQLENLSATAVQIEQRLESLPAMVAGVFSEDGSLRLEATSHFRKLLSIERNPPIEEVIKSGVVPRFVEFLGRDDYPQLQFEAAWALTNIASGTSDHTKVVIDHGAIPVFIRLLTSASDDVREQAVWALGNVAGDSPKCRDLVLAHGALMPLLAQFNEHAKISMLRNATWTLSNFCRGKPQPHFEQTKPALPALAKLITSNDEEVLTDACWAFSYLSDGTNDKIQAVIDSGVCGRLVELLYHPSSSVLIPALRTVGNIVTGDDMQTQVIIQHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNSEQIQAVIEAGIIGPLVQLLGTAEFEIKKEAAWAVSNATSGGTHEQLKFLVSQGCIKPLCDLLNCPDPRIVTVALEGLENILKVGEAEKNLGHTGDVNVYAQLIDEAEGLEKIENLQSHDNNEIYEKSVKLLETYWLEDDDEQLPGGDTAQSELKFAGNGPSVPSGGFSFS 530
            MSLRPNARTEVRRS+YKVAVDA+EGRRRREDNMVEIRKN+REE+L KKRREG+QA Q    S    Q++++LESLPAMVAGV+S+D +L+LEAT+ FRKLLSIERNPPIEEVI+SGVVPRFV+FL RDDYP+LQFEAAWALTNIASGTS++T VVIDHGA+P+F+RLL S SDDVREQAVWALGNVAGDSPKCRDLVL HGAL+PLLAQFNEHAK+SMLRNATWTLSNFCRGKPQP FEQTKPALPALA+LI SNDEEVLTDACWA SYLSDGTNDKIQAVI++GVC RLVELL HPS SVLIPALRTVGNIVTGDD+QTQVII+HQALPCLLNLL +N+KKSIKKEACWTISNITAGN +QIQAVIEAGII PLVQLL  AEFEIKKEAAWA+SNATSGGT+EQ+KFLV QGCIKPLCDLL CPDPRIVTV LEGLENILKVGE EKNLG+TGDVN+YAQLIDEAEGLEKIENLQSHDNNEIYEK+VK+LETYWLED+DEQLP GDT+QS   F G+   VPSGGF+FS
Sbjct:    1 MSLRPNARTEVRRSRYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAQQFPT-SNNVSQLDKKLESLPAMVAGVWSDDSNLQLEATTQFRKLLSIERNPPIEEVIQSGVVPRFVKFLARDDYPKLQFEAAWALTNIASGTSENTNVVIDHGAVPIFVRLLGSPSDDVREQAVWALGNVAGDSPKCRDLVLNHGALIPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPQFEQTKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDIQTQVIIEHQALPCLLNLLIHNYKKSIKKEACWTISNITAGNRDQIQAVIEAGIIAPLVQLLQNAEFEIKKEAAWAISNATSGGTNEQIKFLVGQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEVEKNLGNTGDVNLYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDEQLPPGDTSQSGFHFGGSELPVPSGGFNFS 529
[Close]
BLAST of XM_017387626.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BJS2 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})

HSP 1 Score: 921.768 bits (2381), Expect = 0.000e+0
Identity = 444/530 (83.77%), Postives = 489/530 (92.26%), Query Frame = 0
 
Query:    1 MSLRPNARTEVRRSKYKVAVDADEGRRRREDNMVEIRKNRREENLQKKRREGVQAPQLENLSATAVQIEQRLESLPAMVAGVFSEDGSLRLEATSHFRKLLSIERNPPIEEVIKSGVVPRFVEFLGRDDYPQLQFEAAWALTNIASGTSDHTKVVIDHGAIPVFIRLLTSASDDVREQAVWALGNVAGDSPKCRDLVLAHGALMPLLAQFNEHAKISMLRNATWTLSNFCRGKPQPHFEQTKPALPALAKLITSNDEEVLTDACWAFSYLSDGTNDKIQAVIDSGVCGRLVELLYHPSSSVLIPALRTVGNIVTGDDMQTQVIIQHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNSEQIQAVIEAGIIGPLVQLLGTAEFEIKKEAAWAVSNATSGGTHEQLKFLVSQGCIKPLCDLLNCPDPRIVTVALEGLENILKVGEAEKNLGHTGDVNVYAQLIDEAEGLEKIENLQSHDNNEIYEKSVKLLETYWLEDDDEQLPGGDTAQSELKFAGNGPSVPSGGFSFS 530
            MSLRP ARTEVRRS+YKVAVDA+EGRRRREDNMVEIRKN+REE+L KKRREG+Q  Q    S    Q++++LESLPAMVAGV+S++ +L+LEAT+ FRKLLSIERNPPIEEVI+SGVVPRFVEFL RD+YP+LQFEAAWALTNIASGTS++TKVVIDHGA+P+F+RLL S SDDVREQAVWALGN+AGDSPKCRDLVL HGAL+PLLAQFNEHAK+SMLRNATWTLSNFCRGKPQP FE TKPALPALA+LI SNDEEVLTDACWA SYLSDGTNDKIQAVI++GVC RLVELL HPS SVLIPALRTVGNIVTGDD+QTQVII+HQALPCLLNLLT+N+KKSIKKEACWTISNITAGN +QIQAVIEAGII PLVQLL  AEFEIKKEAAWA+SNATSGGTHEQ+KFLV QGCIKPLCDLL CPDPRIVTV LEGLENILKVGE EKNLG+TGDVN+YAQLIDEAEGLEKIENLQSHDNNEIYEK+VK+LETYWLED+D+QLP GDT+QS   F G+   VPSGGF+FS
Sbjct:    1 MSLRPTARTEVRRSRYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQTQQFPT-SINVSQVDRKLESLPAMVAGVWSDESNLQLEATTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDNYPKLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVRLLGSPSDDVREQAVWALGNIAGDSPKCRDLVLNHGALVPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPQFELTKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDIQTQVIIEHQALPCLLNLLTHNYKKSIKKEACWTISNITAGNRDQIQAVIEAGIIVPLVQLLQNAEFEIKKEAAWAISNATSGGTHEQIKFLVGQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEVEKNLGNTGDVNLYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDDQLPPGDTSQSGFNFGGSELPVPSGGFNFS 529
[Close]
BLAST of XM_017387626.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GAX6 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})

HSP 1 Score: 921.383 bits (2380), Expect = 0.000e+0
Identity = 444/539 (82.37%), Postives = 487/539 (90.35%), Query Frame = 0
 
Query:    1 MSLRPNARTEVRRSKYKVAVDADEGRRRREDNMVEIRKNRREENLQKKRREGVQAPQLENLSATAVQIEQRLESLPAMVAGVFSEDGSLRLEATSHFRKLLSIERNPPIEEVIKSGVVPRFVEFLGRDDYPQLQFEAAWALTNIASGTSDHTKVVIDHGAIPVFIRLLTSASDDVREQAVWALGNVAGDSPKCRDLVLAHGALMPLLAQFNEHAKISMLRNATWTLSNFCRGKPQPHFEQ---------TKPALPALAKLITSNDEEVLTDACWAFSYLSDGTNDKIQAVIDSGVCGRLVELLYHPSSSVLIPALRTVGNIVTGDDMQTQVIIQHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNSEQIQAVIEAGIIGPLVQLLGTAEFEIKKEAAWAVSNATSGGTHEQLKFLVSQGCIKPLCDLLNCPDPRIVTVALEGLENILKVGEAEKNLGHTGDVNVYAQLIDEAEGLEKIENLQSHDNNEIYEKSVKLLETYWLEDDDEQLPGGDTAQSELKFAGNGPSVPSGGFSFS 530
            MSLRP+ARTEVRRSKYKVAVDA+EGRRRREDNMVEIRKN+REE+L KKRREG+QA Q  + +    QI+++LESLP M+AGV+SED SL+LEAT+ FRKLLSIERNPPIEEVI+SGVVPRFVEFL RDDYPQLQFEAAWALTNIASGTS++TKVVIDHGA+P+F+RLL S SDDVREQAVWALGN+AGDSPKCRDLVL HGALMPLLAQFNEHAK+SMLRNATWTLSNFCRGKPQP FEQ         TKPALPALA+LI SNDEEVLTDACWA SYLSDGTNDKIQAVI++ VC RLVELL HPS SVLIPALRTVGNIVTGDD+QTQVI+ HQALPCLLNLLT N+KKS+KKEACWTISNITAGN +QIQAVIEAGI+ PLVQLL  AEFEIKKEAAWA+SNATSGGTHEQ+KFLV QGCIKPLCDLL CPDPRIVTV LEGLENILKVGE EKNLG++ +VN+YAQ IDEAEGLEKIENLQSHDNNEIYEK+VK+LETYWLED+DEQLP  D +QS  +F GN P VPSGGF+FS
Sbjct:    1 MSLRPSARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQFPS-TINVSQIDKKLESLPGMIAGVWSEDSSLQLEATTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVRLLGSPSDDVREQAVWALGNIAGDSPKCRDLVLNHGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPQFEQVRLLKDTIGTKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAVVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDIQTQVILDHQALPCLLNLLTQNYKKSVKKEACWTISNITAGNRDQIQAVIEAGIVAPLVQLLQNAEFEIKKEAAWAISNATSGGTHEQIKFLVDQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEVEKNLGNSSNVNLYAQFIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDEQLPPADASQSGFQFGGNEPPVPSGGFNFS 538
[Close]
BLAST of XM_017387626.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EZ26 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})

HSP 1 Score: 920.998 bits (2379), Expect = 0.000e+0
Identity = 442/531 (83.24%), Postives = 487/531 (91.71%), Query Frame = 0
 
Query:    1 MSLRPNARTEVRRSKYKVAVDADEGRRRREDNMVEIRKNRREENLQKKRREGVQAPQLENLSATAVQIEQRLESLPAMVAGVFSEDGSLRLEATSHFRKLLSIERNPPIEEVIKSGVVPRFVEFLGRDDYPQLQFEAAWALTNIASGTSDHTKVVIDHGAIPVFIRLLTSASDDVREQAVWALGNVAGDSPKCRDLVLAHGALMPLLAQFNEHAKISMLRNATWTLSNFCRGKPQPHFEQTKPALPALAKLITSNDEEVLTDACWAFSYLSDGTNDKIQAVIDSGVCGRLVELLYHPSSSVLIPALRTVGNIVTGDDMQTQVIIQHQALPCLLNLLTN-NHKKSIKKEACWTISNITAGNSEQIQAVIEAGIIGPLVQLLGTAEFEIKKEAAWAVSNATSGGTHEQLKFLVSQGCIKPLCDLLNCPDPRIVTVALEGLENILKVGEAEKNLGHTGDVNVYAQLIDEAEGLEKIENLQSHDNNEIYEKSVKLLETYWLEDDDEQLPGGDTAQSELKFAGNGPSVPSGGFSFS 530
            MSLRP+ARTEVRRSKYKVAVDA+EGRRRREDNMVEIRKN+REE+L KKRREG+QA Q  + +    QI+++LESLP M+AGV+SED SL+LEAT+ FRKLLSIERNPPIEEVI+SGVVPRFVEFL RDDYPQLQFEAAWALTNIASGTS++TKVVIDHGA+P+F+RLL S SDDVREQAVWALGN+AGDSPKCRDLVL HGALMPLLAQFNEHAK+SMLRNATWTLSNFCRGKPQP FEQTKPALPALA+LI SNDEEVLTDACWA SYLSDGTNDKIQAVI++ VC RLVELL HPS SVLIPALRTVGNIVTGDD+QTQVI+ HQALPC+LNLLT+ N+KKS+KKEACWTISNITAGN +QIQAVIEAGI+ PL QLL  AEFEIKKEAAWA+SNATSGGTHEQ+KFLV QGCIKPLCDLL CPDPRIVTV LEGLENILKVGE EKNLG++ +VN+YAQ IDEAEGLEKIENLQSHDNNEIYEK+VK+LETYWLED+DEQLP  D +QS  +F GN P VPSGGF+FS
Sbjct:    1 MSLRPSARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQFPS-TINVSQIDKKLESLPGMIAGVWSEDSSLQLEATTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVRLLGSPSDDVREQAVWALGNIAGDSPKCRDLVLNHGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPQFEQTKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAVVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDIQTQVILDHQALPCMLNLLTHKNYKKSVKKEACWTISNITAGNRDQIQAVIEAGIVAPLAQLLQNAEFEIKKEAAWAISNATSGGTHEQIKFLVDQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEVEKNLGNSSNVNLYAQFIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDEQLPPADASQSGFQFGGNEPPVPSGGFNFS 530
[Close]
BLAST of XM_017387626.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QUB1 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})

HSP 1 Score: 913.294 bits (2359), Expect = 0.000e+0
Identity = 441/530 (83.21%), Postives = 485/530 (91.51%), Query Frame = 0
 
Query:    1 MSLRPNARTEVRRSKYKVAVDADEGRRRREDNMVEIRKNRREENLQKKRREGVQAPQLENLSATAVQIEQRLESLPAMVAGVFSEDGSLRLEATSHFRKLLSIERNPPIEEVIKSGVVPRFVEFLGRDDYPQLQFEAAWALTNIASGTSDHTKVVIDHGAIPVFIRLLTSASDDVREQAVWALGNVAGDSPKCRDLVLAHGALMPLLAQFNEHAKISMLRNATWTLSNFCRGKPQPHFEQTKPALPALAKLITSNDEEVLTDACWAFSYLSDGTNDKIQAVIDSGVCGRLVELLYHPSSSVLIPALRTVGNIVTGDDMQTQVIIQHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNSEQIQAVIEAGIIGPLVQLLGTAEFEIKKEAAWAVSNATSGGTHEQLKFLVSQGCIKPLCDLLNCPDPRIVTVALEGLENILKVGEAEKNLGHTGDVNVYAQLIDEAEGLEKIENLQSHDNNEIYEKSVKLLETYWLEDDDEQLPGGDTAQSELKFAGNGPSVPSGGFSFS 530
            MSLRPNARTEVRRS+YKVAVDA+EGRRRREDNMVEIRKNRREE+L KKRREG+QA QL   +    QIE++LESLPAMVAGV+ ED SL+LEAT+ FRKLLSIERNPPIEEVI+SGVVPRFVEFL RDDYPQLQFEAAWALTNIASGT+++TK V+DHGA+P+F+RLL SASDDVREQAVWALGN+AGDSPKCRDLVL HGALMPLL+QFNEH K+SMLRNATWTLSNFCRGKPQP FEQTKPALPALA+LI SNDEEVLTDACWA SYLSDGTNDKIQAVI++ VC RLVELL HPS SVLIPALRT+GNIVTGDD+QTQVII HQALPCLLN LT+N+KKSIKKEACWTISNITAGN +QIQAV +AGII PLVQLL  AEF+IKKEAAWA+SNATSGGTHEQ+KFLVSQGCIKPLCDLL CPDPRIVTV LEGLENILKVGE  KN G TG+VN YAQLI+EAEGLEKIENLQSHDNNEIYEK+VK+LETYWLE+++EQLP GDT+QS  +F GN   +PSGGF+FS
Sbjct:    1 MSLRPNARTEVRRSRYKVAVDAEEGRRRREDNMVEIRKNRREESLLKKRREGLQAQQLPT-TVNVSQIEKKLESLPAMVAGVWLEDSSLQLEATTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDYPQLQFEAAWALTNIASGTAENTKAVLDHGAVPIFVRLLGSASDDVREQAVWALGNIAGDSPKCRDLVLNHGALMPLLSQFNEHTKLSMLRNATWTLSNFCRGKPQPQFEQTKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAAVCPRLVELLLHPSPSVLIPALRTIGNIVTGDDIQTQVIIDHQALPCLLNFLTHNYKKSIKKEACWTISNITAGNRDQIQAVFDAGIIAPLVQLLQNAEFDIKKEAAWAISNATSGGTHEQIKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEVGKNSGETGNVNFYAQLIEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEEEQLPSGDTSQSGFQFGGNELPLPSGGFNFS 529
[Close]
BLAST of XM_017387626.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J8ZTL8 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})

HSP 1 Score: 912.524 bits (2357), Expect = 0.000e+0
Identity = 443/535 (82.80%), Postives = 488/535 (91.21%), Query Frame = 0
 
Query:    1 MSLRPNARTEVRRSKYKVAVDADEGRRRREDNMVEIRKNRREENLQKKRREGVQAPQLENL-----SATAVQIEQRLESLPAMVAGVFSEDGSLRLEATSHFRKLLSIERNPPIEEVIKSGVVPRFVEFLGRDDYPQLQFEAAWALTNIASGTSDHTKVVIDHGAIPVFIRLLTSASDDVREQAVWALGNVAGDSPKCRDLVLAHGALMPLLAQFNEHAKISMLRNATWTLSNFCRGKPQPHFEQTKPALPALAKLITSNDEEVLTDACWAFSYLSDGTNDKIQAVIDSGVCGRLVELLYHPSSSVLIPALRTVGNIVTGDDMQTQVIIQHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNSEQIQAVIEAGIIGPLVQLLGTAEFEIKKEAAWAVSNATSGGTHEQLKFLVSQGCIKPLCDLLNCPDPRIVTVALEGLENILKVGEAEKNLGHTGDVNVYAQLIDEAEGLEKIENLQSHDNNEIYEKSVKLLETYWLEDDDEQLPGGDTAQSELKFAGNGPSVPSGGFSFS 530
            MSLRP+ARTEVRR++YKVAVDA+EGRRRREDNMVEIRKN+REENL KKRREG+ A Q +       S+TA   E++LESLPAMVAGV+SED +++LEAT+ FRKLLSIER+PPI EV++SGVVPRFVEFL RDD+PQLQFEAAWALTNIASGTSD+T+VVIDHGA+P+F++LL S +DDVREQAVWALGNVAGDSPKCRDLVL HGAL+PLLAQFNEHAK+SMLRNATWTLSNFCRGKPQP FEQTKPALPAL +LI SNDEEVLTDACWA SYLSDGTNDKIQAVI++GVC RLVELL HPS +VLIPALRTVGNIVTGDDMQTQ II HQALPCLLNLLTN +KKSIKKEACWTISNITAGN +QIQAVIEAGII PLV LL  AEFEIKKEAAWA+SNATSGGTHEQ+KFLVSQGCIKPLCDLLNCPDPRIVTV LEGLENILKVGEAEKNLGHTGDVN+YAQLID+AEGLEKIENLQSHDNNEIYEK+VK+LETYW+ED+DE LP GD +Q   +F GN   VPSGGF+FS
Sbjct:    1 MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRREGLLAQQQQPQQQQLLSSTAGS-EKKLESLPAMVAGVWSEDRNMQLEATTQFRKLLSIERSPPINEVVQSGVVPRFVEFLNRDDFPQLQFEAAWALTNIASGTSDNTRVVIDHGAVPIFVKLLGSPTDDVREQAVWALGNVAGDSPKCRDLVLGHGALVPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPSFEQTKPALPALERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLMHPSPTVLIPALRTVGNIVTGDDMQTQCIIGHQALPCLLNLLTNTYKKSIKKEACWTISNITAGNVDQIQAVIEAGIIAPLVHLLQNAEFEIKKEAAWAISNATSGGTHEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKVGEAEKNLGHTGDVNLYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWVEDEDEALPTGDASQPGFQFGGNQLPVPSGGFNFS 534
[Close]
BLAST of XM_017387626.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J9LS63 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})

HSP 1 Score: 912.524 bits (2357), Expect = 0.000e+0
Identity = 443/535 (82.80%), Postives = 488/535 (91.21%), Query Frame = 0
 
Query:    1 MSLRPNARTEVRRSKYKVAVDADEGRRRREDNMVEIRKNRREENLQKKRREGVQAPQLENL-----SATAVQIEQRLESLPAMVAGVFSEDGSLRLEATSHFRKLLSIERNPPIEEVIKSGVVPRFVEFLGRDDYPQLQFEAAWALTNIASGTSDHTKVVIDHGAIPVFIRLLTSASDDVREQAVWALGNVAGDSPKCRDLVLAHGALMPLLAQFNEHAKISMLRNATWTLSNFCRGKPQPHFEQTKPALPALAKLITSNDEEVLTDACWAFSYLSDGTNDKIQAVIDSGVCGRLVELLYHPSSSVLIPALRTVGNIVTGDDMQTQVIIQHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNSEQIQAVIEAGIIGPLVQLLGTAEFEIKKEAAWAVSNATSGGTHEQLKFLVSQGCIKPLCDLLNCPDPRIVTVALEGLENILKVGEAEKNLGHTGDVNVYAQLIDEAEGLEKIENLQSHDNNEIYEKSVKLLETYWLEDDDEQLPGGDTAQSELKFAGNGPSVPSGGFSFS 530
            MSLRP+ARTEVRR++YKVAVDA+EGRRRREDNMVEIRKN+REENL KKRREG+ A Q +       S+TA   E++LESLPAMVAGV+SED +++LEAT+ FRKLLSIER+PPI EV++SGVVPRFVEFL RDD+PQLQFEAAWALTNIASGTSD+T+VVIDHGA+P+F++LL S +DDVREQAVWALGNVAGDSPKCRDLVL HGAL+PLLAQFNEHAK+SMLRNATWTLSNFCRGKPQP FEQTKPALPAL +LI SNDEEVLTDACWA SYLSDGTNDKIQAVI++GVC RLVELL HPS +VLIPALRTVGNIVTGDDMQTQ II HQALPCLLNLLTN +KKSIKKEACWTISNITAGN +QIQAVIEAGII PLV LL  AEFEIKKEAAWA+SNATSGGTHEQ+KFLVSQGCIKPLCDLLNCPDPRIVTV LEGLENILKVGEAEKNLGHTGDVN+YAQLID+AEGLEKIENLQSHDNNEIYEK+VK+LETYW+ED+DE LP GD +Q   +F GN   VPSGGF+FS
Sbjct:    1 MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRREGLLAQQQQPQQQQLLSSTAGS-EKKLESLPAMVAGVWSEDRNMQLEATTQFRKLLSIERSPPINEVVQSGVVPRFVEFLNRDDFPQLQFEAAWALTNIASGTSDNTRVVIDHGAVPIFVKLLGSPTDDVREQAVWALGNVAGDSPKCRDLVLGHGALVPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPSFEQTKPALPALERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLMHPSPTVLIPALRTVGNIVTGDDMQTQCIIGHQALPCLLNLLTNTYKKSIKKEACWTISNITAGNVDQIQAVIEAGIIAPLVHLLQNAEFEIKKEAAWAISNATSGGTHEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKVGEAEKNLGHTGDVNLYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWVEDEDEALPTGDASQPGFQFGGNQLPVPSGGFNFS 534
[Close]
BLAST of XM_017387626.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1Q3AN68 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})

HSP 1 Score: 912.138 bits (2356), Expect = 0.000e+0
Identity = 435/531 (81.92%), Postives = 490/531 (92.28%), Query Frame = 0
 
Query:    1 MSLRPNARTEVRRSKYKVAVDADEGRRRREDNMVEIRKNRREENLQKKRREGVQAPQLENLSATAVQIEQRLESLPAMVAGVFSEDGSLRLEATSHFRKLLSIERNPPIEEVIKSGVVPRFVEFLGRDDYPQLQFEAAWALTNIASGTSDHTKVVIDHGAIPVFIRLLTSASDDVREQAVWALGNVAGDSPKCRDLVLAHGALMPLLAQFNEHAKISMLRNATWTLSNFCRGKPQPHFEQTKPALPALAKLITSNDEEVLTDACWAFSYLSDGTNDKIQAVIDSGVCGRLVELLYHPSSSVLIPALRTVGNIVTGDDMQTQVIIQHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNSEQIQAVIEAGIIGPLVQLLGTAEFEIKKEAAWAVSNATSGGTHEQLKFLVSQGCIKPLCDLLNCPDPRIVTVALEGLENILKVGEAEKNLGHTGDVNVYAQLIDEAEGLEKIENLQSHDNNEIYEKSVKLLETYWLED-DDEQLPGGDTAQSELKFAGNGPSVPSGGFSFS 530
            MSLRP+ARTEVRR+ YKVAVDA+EGRRRREDNMVEIRKN+REE+LQKKRREG+Q  QL +   + +  E++LESLPA+VA V+S+DG+ +LEAT+HFRKLLSIER+PPI EV+++GVVPR VEFL RDD+PQLQFEAAWALTNIASGTS++T+VVIDHGA+P+F++LL+S +DDVREQAVWALGNVAGDSPKCRDLVL HGALMPLLAQFNEHAK+SMLRNATWTLSNFCRGKPQP+FEQTKPALPAL +LI SNDEEVLTDACWA SYLSDGTNDKIQAVI++GVC RLVELL HPS +VLIPALRTVGNIVTGDDMQTQ +I HQ LPCL+NLLTNN+KKSIKKEACWTISNITAGN +QIQAV+ AGII PLVQLL  AEFEIKKEAAWA+SNATSGGTHEQ+KFLVSQGCIKPLCDLLNCPDPRIVTV LEGLENILKVGEAEKNLG+TGDVN+YAQLID+AEGLEKIENLQSHDNNEIYEK+VK+LETYW+ED DDE LP GD++QS  +F G+   VPSGGF+FS
Sbjct:    1 MSLRPSARTEVRRNSYKVAVDAEEGRRRREDNMVEIRKNKREESLQKKRREGLQ--QLPSTVTSTLASEKKLESLPALVASVWSDDGNAQLEATTHFRKLLSIERSPPINEVVQAGVVPRLVEFLARDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVKLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLGHGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPNFEQTKPALPALERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPTVLIPALRTVGNIVTGDDMQTQCMINHQVLPCLVNLLTNNYKKSIKKEACWTISNITAGNGDQIQAVVGAGIIAPLVQLLQNAEFEIKKEAAWAISNATSGGTHEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKVGEAEKNLGNTGDVNLYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWVEDEDDEPLPPGDSSQSGFRFGGSELPVPSGGFNFS 529
Match NameStatsDescription
A0A6L5BEL7E-Value: 0.000e+0, PID: 86.39Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more]
A0A834L6D4E-Value: 0.000e+0, PID: 84.75(Uncharacterized protein {ECO:0000313|EMBL:KAF7119... [more]
A0A5B7BD68E-Value: 0.000e+0, PID: 84.34Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more]
A0A5J5BJS2E-Value: 0.000e+0, PID: 83.77Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more]
A0A7J7GAX6E-Value: 0.000e+0, PID: 82.37Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more]
A0A4S4EZ26E-Value: 0.000e+0, PID: 83.24Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more]
A0A2R6QUB1E-Value: 0.000e+0, PID: 83.21Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more]
A0A7J8ZTL8E-Value: 0.000e+0, PID: 82.80Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more]
A0A7J9LS63E-Value: 0.000e+0, PID: 82.80Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more]
A0A1Q3AN68E-Value: 0.000e+0, PID: 81.92Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.