Resource Type:
Polypeptide
Name:
XM_017387303.1
Identifier:
XM_017387303.1-protein
Sequence:
MSTPSPRPYRHHKTLTGHSLAISCVKFSPTGKLLASSSLDKTLIIFSLQS
LSPLSTLSGHSAGISDLAWSSDSHYICSASDDSTLRIWDALLFDCVKTLR
GHSNYVFCVNFSPRSDMIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTS
VGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNG
KFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVS
GSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRT
IRIWVQD
Sequence Length:
307
Sequence Checksum:
87e125cae4f9866332f1e6e44d29615c
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017387303.1, derives from mRNA, XM_017387303.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017387303.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017387303.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B784 ((Putative WD repeat-containing protein 5 {ECO:0000313|EMBL:MPA64840.1}))
HSP 1 Score: 499.59 bits (1285), Expect = 1.422e-177
Identity = 241/304 (79.28%), Postives = 269/304 (88.49%), Query Frame = 0
Match: A0A5B7B784 ((Putative WD repeat-containing protein 5 {ECO:0000313|EMBL:MPA64840.1}))
HSP 1 Score: 499.59 bits (1285), Expect = 1.422e-177
Identity = 241/304 (79.28%), Postives = 269/304 (88.49%), Query Frame = 0
Query: 4 PSPRPYRHHKTLTGHSLAISCVKFSPTGKLLASSSLDKTLIIFSLQSLSPLSTLSGHSAGISDLAWSSDSHYICSASDDSTLRIWDALLFDCVKTLRGHSNYVFCVNFSPRSDMIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIWVQD 307
PS RPYRH KTLT H+ A+SCVKFS G LLASSSLDKTLI++S +L+ +S L GHS G+SDLAWSSDSHYICSASDD TLRIWDA DCVKTLRGH+++VFCVNF+P+S++IVSGSFDETVRVWD KTG+ VHVI+AHSMPVTSV +NRDGSLIVSGSHDGSCKIWD SG +K LIDDK PA SFAKFSPNGKFILVATLDDTLKLWN+ TGKFLKIYTGH+NR YCIT TFSVTNG IVSGSEDKCVY+WDLQGK+++QKLEGH+DTV+SVSCHPT N IASAGLD DRT+RIWVQD
Sbjct: 10 PSYRPYRHLKTLTAHNRAVSCVKFSNDGHLLASSSLDKTLIVWSTDTLALVSRLVGHSEGVSDLAWSSDSHYICSASDDRTLRIWDARAADCVKTLRGHTDFVFCVNFNPQSNLIVSGSFDETVRVWDVKTGRSVHVIRAHSMPVTSVHFNRDGSLIVSGSHDGSCKIWDAGSGAILKTLIDDKVPAASFAKFSPNGKFILVATLDDTLKLWNYSTGKFLKIYTGHVNRVYCITSTFSVTNGKYIVSGSEDKCVYLWDLQGKTMVQKLEGHSDTVISVSCHPTVNKIASAGLDGDRTVRIWVQD 313
BLAST of XM_017387303.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6I9R5 ((Compass-like h3k4 histone methylase component wdr5b {ECO:0000313|EMBL:OIT01290.1}))
HSP 1 Score: 496.508 bits (1277), Expect = 2.209e-176
Identity = 233/304 (76.64%), Postives = 266/304 (87.50%), Query Frame = 0
Match: A0A1J6I9R5 ((Compass-like h3k4 histone methylase component wdr5b {ECO:0000313|EMBL:OIT01290.1}))
HSP 1 Score: 496.508 bits (1277), Expect = 2.209e-176
Identity = 233/304 (76.64%), Postives = 266/304 (87.50%), Query Frame = 0
Query: 4 PSPRPYRHHKTLTGHSLAISCVKFSPTGKLLASSSLDKTLIIFSLQSLSPLSTLSGHSAGISDLAWSSDSHYICSASDDSTLRIWDALLFDCVKTLRGHSNYVFCVNFSPRSDMIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIWVQD 307
P +PYR K LTGH+LA+SCVKFS G+L AS+SLDKTLI++S Q+L+ LS L GHS G+SDLAWSSDS YICSASDD TLRIWDA +CVKTLRGH+ +VFCVNF+P+S++IVSGSFDET+RVWD KTGK HVI+AHSMPVTSV +NRDGSLIVSGSHDGSCKIWD SG C+K LIDDK PAVSF KFSPNGKFILVATL+D LKLWN+ TGKFLK+Y GH+NR YCIT TFSVTNG IVSGSED+CVYIWDLQGK+++QKLEGHTDTV+SV+CHPTENMI SAGLD DRT+R+WVQD
Sbjct: 9 PPYQPYRQKKVLTGHTLAVSCVKFSNNGQLFASASLDKTLIVWSTQTLNQLSRLVGHSEGVSDLAWSSDSSYICSASDDRTLRIWDARAAECVKTLRGHTGFVFCVNFNPQSNLIVSGSFDETIRVWDVKTGKSNHVIRAHSMPVTSVHFNRDGSLIVSGSHDGSCKIWDTASGVCLKTLIDDKVPAVSFTKFSPNGKFILVATLEDNLKLWNYSTGKFLKVYAGHVNRVYCITSTFSVTNGKYIVSGSEDRCVYIWDLQGKNLLQKLEGHTDTVISVTCHPTENMIVSAGLDNDRTLRVWVQD 312
BLAST of XM_017387303.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4A1Y1 ((COMPASS-like H3K4 histone methylase component WDR5B {ECO:0000313|RefSeq:XP_016470610.1}))
HSP 1 Score: 496.123 bits (1276), Expect = 2.457e-176
Identity = 233/304 (76.64%), Postives = 265/304 (87.17%), Query Frame = 0
Match: A0A1S4A1Y1 ((COMPASS-like H3K4 histone methylase component WDR5B {ECO:0000313|RefSeq:XP_016470610.1}))
HSP 1 Score: 496.123 bits (1276), Expect = 2.457e-176
Identity = 233/304 (76.64%), Postives = 265/304 (87.17%), Query Frame = 0
Query: 4 PSPRPYRHHKTLTGHSLAISCVKFSPTGKLLASSSLDKTLIIFSLQSLSPLSTLSGHSAGISDLAWSSDSHYICSASDDSTLRIWDALLFDCVKTLRGHSNYVFCVNFSPRSDMIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIWVQD 307
P +PYR K LTGH+LA+SCVKFS G+L AS+SLDKTLI++S Q+L+ LS L GHS G+SDLAWSSDS YICSASDD TLRIWDA +CVKTLRGH+ +VFCVNF+P+S+ IVSGSFDET+RVWD KTGK HVI+AHSMPVTSV +NRDGSLIVSGSHDGSCKIWD SG C+K LIDDK PAVSF KFSPNGKFILVATL+D LKLWN+ TGKFLK+Y GH+NR YCIT TFSVTNG IVSGSED+CVYIWDLQGK+++QKLEGHTDTV+SV+CHPTENMI SAGLD DRT+R+WVQD
Sbjct: 8 PPYQPYRQKKVLTGHTLAVSCVKFSNNGQLFASASLDKTLIVWSTQTLTQLSRLVGHSEGVSDLAWSSDSSYICSASDDRTLRIWDARAAECVKTLRGHTGFVFCVNFNPQSNFIVSGSFDETIRVWDVKTGKSNHVIRAHSMPVTSVHFNRDGSLIVSGSHDGSCKIWDTASGGCLKTLIDDKVPAVSFTKFSPNGKFILVATLEDNLKLWNYSTGKFLKVYAGHVNRVYCITSTFSVTNGKYIVSGSEDRCVYIWDLQGKNLLQKLEGHTDTVISVTCHPTENMIVSAGLDNDRTVRVWVQD 311
BLAST of XM_017387303.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7FU13 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5930394.1}))
HSP 1 Score: 493.426 bits (1269), Expect = 2.943e-175
Identity = 234/301 (77.74%), Postives = 267/301 (88.70%), Query Frame = 0
HSP 2 Score: 52.7582 bits (125), Expect = 3.027e-5
Identity = 33/89 (37.08%), Postives = 49/89 (55.06%), Query Frame = 0
Match: A0A7J7FU13 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5930394.1}))
HSP 1 Score: 493.426 bits (1269), Expect = 2.943e-175
Identity = 234/301 (77.74%), Postives = 267/301 (88.70%), Query Frame = 0
Query: 7 RPYRHHKTLTGHSLAISCVKFSPTGKLLASSSLDKTLIIFSLQSLSPLSTLSGHSAGISDLAWSSDSHYICSASDDSTLRIWDALLFDCVKTLRGHSNYVFCVNFSPRSDMIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIWVQD 307
RPYRH KTLTGH A+SCVKFS G LLAS+SLDK LI++S Q+L+ +S L GHS G+SDLAWSSDSHYICSASDD TLRIWD+ +CVKTLRGH+++VFCVNF+P+S++IVSGSFDETVRVWD KTG+ VHVI+AHSMPVTSV +NRDGSLIVSGS DGSCKIWD +G C+K LIDDK PAVSFAKFSPNGKFILVATLDDTLKLWN+ TGKFLKIYTGH NR YC+T TFSVTNG IVSGSEDK VY+WDLQGK+++QKL+GH+DTV+SV+CHPTEN IASAGLD D+TIRIWVQD
Sbjct: 12 RPYRHLKTLTGHQRAVSCVKFSNDGTLLASASLDKKLIVWSSQTLTLISRLDGHSDGVSDLAWSSDSHYICSASDDRTLRIWDSRAAECVKTLRGHTDFVFCVNFNPQSNLIVSGSFDETVRVWDVKTGRSVHVIRAHSMPVTSVHFNRDGSLIVSGSRDGSCKIWDAATGSCLKTLIDDKVPAVSFAKFSPNGKFILVATLDDTLKLWNYSTGKFLKIYTGHANRAYCVTSTFSVTNGKYIVSGSEDKSVYLWDLQGKNMVQKLDGHSDTVISVTCHPTENKIASAGLDGDKTIRIWVQD 312
HSP 2 Score: 52.7582 bits (125), Expect = 3.027e-5
Identity = 33/89 (37.08%), Postives = 49/89 (55.06%), Query Frame = 0
Query: 216 NHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIW 304
NH+ + LK TGH C+ FS +GT + S S DK + +W Q ++I +L+GH+D V ++ + I SA DRT+RIW
Sbjct: 10 NHRPYRHLKTLTGHQRAVSCV--KFS-NDGTLLASASLDKKLIVWSSQTLTLISRLDGHSDGVSDLAWSSDSHYICSAS--DDRTLRIW 93
BLAST of XM_017387303.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8BJZ9 ((COMPASS-like H3K4 histone methylase component WDR5B {ECO:0000313|RefSeq:XP_010277470.1}))
HSP 1 Score: 489.574 bits (1259), Expect = 1.050e-173
Identity = 233/295 (78.98%), Postives = 264/295 (89.49%), Query Frame = 0
Match: A0A1U8BJZ9 ((COMPASS-like H3K4 histone methylase component WDR5B {ECO:0000313|RefSeq:XP_010277470.1}))
HSP 1 Score: 489.574 bits (1259), Expect = 1.050e-173
Identity = 233/295 (78.98%), Postives = 264/295 (89.49%), Query Frame = 0
Query: 13 KTLTGHSLAISCVKFSPTGKLLASSSLDKTLIIFSLQSLSPLSTLSGHSAGISDLAWSSDSHYICSASDDSTLRIWDALLFDCVKTLRGHSNYVFCVNFSPRSDMIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIWVQD 307
+TLT H+ A+SCVKFS G LLASSSLDKTLI++ Q+L+PLS L GHS G+SDLAWSSDSHYICSASDD TLRIWDA DCVKTLRGHS +VFCVNF+P+S++IVSGSFDET+RVWD KTG+ VHVIQAHS PVTSV +NRDGS+IVSGSHDG+CKIWD ++G C+K LIDDK PAVSFAKFSPNGKFILVATLDDTLKLWN+ G+FLKIYTGH+NR YCIT TFSVTNG IVSGSEDKCVY+WDLQGK+++QKLEGHTDTV+SV+CHPTEN IASAGLD DRTI+IWVQD
Sbjct: 22 RTLTAHTRAVSCVKFSNDGSLLASSSLDKTLIVWCSQTLNPLSRLIGHSEGVSDLAWSSDSHYICSASDDRTLRIWDARTGDCVKTLRGHSGFVFCVNFNPQSNLIVSGSFDETIRVWDVKTGRCVHVIQAHSEPVTSVHFNRDGSIIVSGSHDGNCKIWDADTGTCLKTLIDDKVPAVSFAKFSPNGKFILVATLDDTLKLWNYSAGRFLKIYTGHVNRVYCITSTFSVTNGKYIVSGSEDKCVYLWDLQGKNMVQKLEGHTDTVISVTCHPTENKIASAGLDKDRTIKIWVQD 316
BLAST of XM_017387303.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7YBL9 ((WD repeat-containing protein 5 {ECO:0000313|RefSeq:XP_009796649.1}))
HSP 1 Score: 489.189 bits (1258), Expect = 1.324e-173
Identity = 232/304 (76.32%), Postives = 265/304 (87.17%), Query Frame = 0
Match: A0A1U7YBL9 ((WD repeat-containing protein 5 {ECO:0000313|RefSeq:XP_009796649.1}))
HSP 1 Score: 489.189 bits (1258), Expect = 1.324e-173
Identity = 232/304 (76.32%), Postives = 265/304 (87.17%), Query Frame = 0
Query: 4 PSPRPYRHHKTLTGHSLAISCVKFSPTGKLLASSSLDKTLIIFSLQSLSPLSTLSGHSAGISDLAWSSDSHYICSASDDSTLRIWDALLFDCVKTLRGHSNYVFCVNFSPRSDMIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIWVQD 307
P +PYR K LTGH+LA+SCVKFS G+L AS+SLDKTLI++S Q+L+ LS L GHS G+SDLAWSSDS YICSASDD TLRIWDA +CVKTLRGH+ +VFCVNF+P+S++IVSGSFDET+RVWD KTGK +VI AHSMPVTSV +NRDGSLIVSGSHDGSCKIWD SG C+K LIDDK PAVSF KFSPNGKFILVATL+D LKLWN+ TGKFLK+Y GH+NR YCIT TFSVTNG IVSGSED+CVYIWDLQGK+++QKLEGHTDTV+SV+CHPTENMI SAGLD DRT+R+WVQD
Sbjct: 9 PPYQPYRQKKVLTGHTLAVSCVKFSNNGQLFASASLDKTLIVWSTQTLNQLSRLVGHSEGVSDLAWSSDSSYICSASDDRTLRIWDARAAECVKTLRGHTGFVFCVNFNPQSNLIVSGSFDETIRVWDVKTGKS-NVILAHSMPVTSVHFNRDGSLIVSGSHDGSCKIWDTASGVCLKTLIDDKVPAVSFTKFSPNGKFILVATLEDNLKLWNYSTGKFLKVYAGHVNRVYCITSTFSVTNGKYIVSGSEDRCVYIWDLQGKNLLQKLEGHTDTVISVTCHPTENMIVSAGLDNDRTVRVWVQD 311
BLAST of XM_017387303.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4CDR0 ((COMPASS-like H3K4 histone methylase component WDR5B {ECO:0000313|RefSeq:XP_016499290.1}))
HSP 1 Score: 489.189 bits (1258), Expect = 1.324e-173
Identity = 232/304 (76.32%), Postives = 265/304 (87.17%), Query Frame = 0
Match: A0A1S4CDR0 ((COMPASS-like H3K4 histone methylase component WDR5B {ECO:0000313|RefSeq:XP_016499290.1}))
HSP 1 Score: 489.189 bits (1258), Expect = 1.324e-173
Identity = 232/304 (76.32%), Postives = 265/304 (87.17%), Query Frame = 0
Query: 4 PSPRPYRHHKTLTGHSLAISCVKFSPTGKLLASSSLDKTLIIFSLQSLSPLSTLSGHSAGISDLAWSSDSHYICSASDDSTLRIWDALLFDCVKTLRGHSNYVFCVNFSPRSDMIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIWVQD 307
P +PYR K LTGH+LA+SCVKFS G+L AS+SLDKTLI++S Q+L+ LS L GHS G+SDLAWSSDS YICSASDD TLRIWDA +CVKTLRGH+ +VFCVNF+P+S++IVSGSFDET+RVWD KTGK +VI AHSMPVTSV +NRDGSLIVSGSHDGSCKIWD SG C+K LIDDK PAVSF KFSPNGKFILVATL+D LKLWN+ TGKFLK+Y GH+NR YCIT TFSVTNG IVSGSED+CVYIWDLQGK+++QKLEGHTDTV+SV+CHPTENMI SAGLD DRT+R+WVQD
Sbjct: 9 PPYQPYRQKKVLTGHTLAVSCVKFSNNGQLFASASLDKTLIVWSTQTLNQLSRLVGHSEGVSDLAWSSDSSYICSASDDRTLRIWDARAAECVKTLRGHTGFVFCVNFNPQSNLIVSGSFDETIRVWDVKTGKS-NVILAHSMPVTSVHFNRDGSLIVSGSHDGSCKIWDTASGVCLKTLIDDKVPAVSFTKFSPNGKFILVATLEDNLKLWNYSTGKFLKVYAGHVNRVYCITSTFSVTNGKYIVSGSEDRCVYIWDLQGKNLLQKLEGHTDTVISVTCHPTENMIVSAGLDNDRTVRVWVQD 311
BLAST of XM_017387303.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0H9E9 ((Transducin/WD40 repeat-like superfamily protein {ECO:0000313|EMBL:GFZ19699.1}))
HSP 1 Score: 485.337 bits (1248), Expect = 4.176e-172
Identity = 229/301 (76.08%), Postives = 265/301 (88.04%), Query Frame = 0
Match: A0A7J0H9E9 ((Transducin/WD40 repeat-like superfamily protein {ECO:0000313|EMBL:GFZ19699.1}))
HSP 1 Score: 485.337 bits (1248), Expect = 4.176e-172
Identity = 229/301 (76.08%), Postives = 265/301 (88.04%), Query Frame = 0
Query: 7 RPYRHHKTLTGHSLAISCVKFSPTGKLLASSSLDKTLIIFSLQSLSPLSTLSGHSAGISDLAWSSDSHYICSASDDSTLRIWDALLFDCVKTLRGHSNYVFCVNFSPRSDMIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIWVQD 307
RPYRH KTLT H A+SCVKFS GK LAS+SLDKT+I++S ++L+ +S L+GHS G+SDLAWSSDSHY+CSASDD TLRIWDAL +CVKTLRGH++ VFCVNF+P+S++IVSGSFDE++R+WD KTG+ V+VI+ H+MPVTSV +NRDGSLIVSGSHDGSCKIWD +G +K LIDDK PAVSFAKFSPNGKFIL ATLDDTLKLWN+ TGKFLKIYTGH+NR YCIT TFSVTNG IVSGSED CVY+WDLQGK++IQKL GH+DTVVSV+CHP EN IASAGLD DRTIRIWVQD
Sbjct: 10 RPYRHMKTLTAHHRAVSCVKFSGDGKFLASASLDKTVIVWSAETLTLISRLAGHSDGVSDLAWSSDSHYVCSASDDRTLRIWDALSAECVKTLRGHTDLVFCVNFNPQSNLIVSGSFDESIRIWDVKTGRCVNVIRGHAMPVTSVHFNRDGSLIVSGSHDGSCKIWDAATGSLLKTLIDDKVPAVSFAKFSPNGKFILAATLDDTLKLWNYSTGKFLKIYTGHVNRVYCITSTFSVTNGKYIVSGSEDNCVYVWDLQGKNMIQKLVGHSDTVVSVACHPLENQIASAGLDGDRTIRIWVQD 310
BLAST of XM_017387303.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6K540 ((Uncharacterized protein {ECO:0000313|EMBL:PLY70196.1}))
HSP 1 Score: 485.723 bits (1249), Expect = 4.227e-172
Identity = 231/303 (76.24%), Postives = 266/303 (87.79%), Query Frame = 0
Match: A0A2J6K540 ((Uncharacterized protein {ECO:0000313|EMBL:PLY70196.1}))
HSP 1 Score: 485.723 bits (1249), Expect = 4.227e-172
Identity = 231/303 (76.24%), Postives = 266/303 (87.79%), Query Frame = 0
Query: 4 PSPRPYRHHKTLTGHSLAISCVKFSPTGKLLASSSLDKTLIIFSLQSLSPLSTLSGHSAGISDLAWSSDSHYICSASDDSTLRIWDALLFDCVKTLRGHSNYVFCVNFSPRSDMIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIWVQ 306
P PYR KTLT H A+SCVKFS +GKLLAS+SLDK+LI+++ ++L+ +S L+GH+ G+SDLAWSSDSHYICSASDD TLRIWDA +CVKTLRGH+++VFCVNFS S++IVSGSFDET+RVWD KTGK HVI+AHS+PVTSV +NRDGSLIVSGSHDGSCKIWD +G C+K LIDDK PAVSF KFSPNGKFILVATLDD LKLWN+ TGKFLK+YTGH+N+ YCITPTFSVTNG IVSGSED CVYIWDLQGK+++QKLEGHTDTV+SV+CHPTENMIASAGL DRTIRIWVQ
Sbjct: 14 PQYAPYRLVKTLTAHQSAVSCVKFSNSGKLLASASLDKSLILWNAENLTLISRLNGHTEGVSDLAWSSDSHYICSASDDKTLRIWDARAAECVKTLRGHTDFVFCVNFSVHSNLIVSGSFDETIRVWDVKTGKTNHVIRAHSLPVTSVHFNRDGSLIVSGSHDGSCKIWDTATGTCLKTLIDDKVPAVSFTKFSPNGKFILVATLDDNLKLWNYSTGKFLKMYTGHVNKKYCITPTFSVTNGKYIVSGSEDHCVYIWDLQGKNLLQKLEGHTDTVISVNCHPTENMIASAGLLGDRTIRIWVQ 316
BLAST of XM_017387303.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7PKX1 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4112500.1}))
HSP 1 Score: 485.723 bits (1249), Expect = 4.227e-172
Identity = 231/303 (76.24%), Postives = 266/303 (87.79%), Query Frame = 0
Match: A0A6S7PKX1 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4112500.1}))
HSP 1 Score: 485.723 bits (1249), Expect = 4.227e-172
Identity = 231/303 (76.24%), Postives = 266/303 (87.79%), Query Frame = 0
Query: 4 PSPRPYRHHKTLTGHSLAISCVKFSPTGKLLASSSLDKTLIIFSLQSLSPLSTLSGHSAGISDLAWSSDSHYICSASDDSTLRIWDALLFDCVKTLRGHSNYVFCVNFSPRSDMIVSGSFDETVRVWDAKTGKVVHVIQAHSMPVTSVGYNRDGSLIVSGSHDGSCKIWDNESGKCVKVLIDDKTPAVSFAKFSPNGKFILVATLDDTLKLWNHQTGKFLKIYTGHLNRTYCITPTFSVTNGTCIVSGSEDKCVYIWDLQGKSVIQKLEGHTDTVVSVSCHPTENMIASAGLDLDRTIRIWVQ 306
P PYR KTLT H A+SCVKFS +GKLLAS+SLDK+LI+++ ++L+ +S L+GH+ G+SDLAWSSDSHYICSASDD TLRIWDA +CVKTLRGH+++VFCVNFS S++IVSGSFDET+RVWD KTGK HVI+AHS+PVTSV +NRDGSLIVSGSHDGSCKIWD +G C+K LIDDK PAVSF KFSPNGKFILVATLDD LKLWN+ TGKFLK+YTGH+N+ YCITPTFSVTNG IVSGSED CVYIWDLQGK+++QKLEGHTDTV+SV+CHPTENMIASAGL DRTIRIWVQ
Sbjct: 14 PQYAPYRLVKTLTAHQSAVSCVKFSNSGKLLASASLDKSLILWNAENLTLISRLNGHTEGVSDLAWSSDSHYICSASDDKTLRIWDARAAECVKTLRGHTDFVFCVNFSVHSNLIVSGSFDETIRVWDVKTGKTNHVIRAHSLPVTSVHFNRDGSLIVSGSHDGSCKIWDTATGTCLKTLIDDKVPAVSFTKFSPNGKFILVATLDDNLKLWNYSTGKFLKMYTGHVNKKYCITPTFSVTNGKYIVSGSEDHCVYIWDLQGKNLLQKLEGHTDTVISVNCHPTENMIASAGLLGDRTIRIWVQ 316
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7B784 | E-Value: 1.422e-177, PID: 79.28 | (Putative WD repeat-containing protein 5 {ECO:0000... [more] |
| A0A1J6I9R5 | E-Value: 2.209e-176, PID: 76.64 | (Compass-like h3k4 histone methylase component wdr... [more] |
| A0A1S4A1Y1 | E-Value: 2.457e-176, PID: 76.64 | (COMPASS-like H3K4 histone methylase component WDR... [more] |
| A0A7J7FU13 | E-Value: 2.943e-175, PID: 77.74 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5930... [more] |
| A0A1U8BJZ9 | E-Value: 1.050e-173, PID: 78.98 | (COMPASS-like H3K4 histone methylase component WDR... [more] |
| A0A1U7YBL9 | E-Value: 1.324e-173, PID: 76.32 | (WD repeat-containing protein 5 {ECO:0000313|RefSe... [more] |
| A0A1S4CDR0 | E-Value: 1.324e-173, PID: 76.32 | (COMPASS-like H3K4 histone methylase component WDR... [more] |
| A0A7J0H9E9 | E-Value: 4.176e-172, PID: 76.08 | (Transducin/WD40 repeat-like superfamily protein {... [more] |
| A0A2J6K540 | E-Value: 4.227e-172, PID: 76.24 | (Uncharacterized protein {ECO:0000313|EMBL:PLY7019... [more] |
| A0A6S7PKX1 | E-Value: 4.227e-172, PID: 76.24 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4112... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |