Resource Type:
Polypeptide
Name:
XM_017381960.1
Identifier:
XM_017381960.1-protein
Sequence:
MDTKSVSCLINTISRFLHLLSSFEMKNMPAQNGYRNIASSLKILKLILDN
VVESKVSSDEILCKECEILDVAVNEAREFIENWSPQMSKFCSVLGGEPLL
LNIQGSSVRISHILCRLLESSPSSSSLSEVQHCKQEFQCAELKKISEPIE
DALKRQQRGLAPDSDNLSIIIESLSLTADLELLKESIALEKERMKAVTRK
SQGDINLISQLVNLISDIRNCLVKYEIFKSINGIAVPLYFRCPLSLRLML
DPVIVATGQTYERTSIQTWLDHGLTICPITRQMLSHTNLIPNYTVKALIA
NWCEENKINLAECTRVVAKTPKMEALYLQDAIRDDRHHSRDSSNSSSRSS
LEVNSFEKPRVNGNPGFSEKNSISNDSNKFDHSSPEQSCHHSRSGSASSQ
ITSAGYVPTISSDGSRTSSKNKDERDLSGEMTSECQSSSSSKRNVSPAPS
LTGKQYHSSNVLVERSAGGDRNYPRTLSMPLDSGSNDLTTNSHVKKLIDD
LRNPSSEVQTTATAELRYLAKHNLENRNIICNCGAIEPLISLLYSDVKQT
QEHAVTALLNLSINGNVKTIIAEAGVIEPLIHVLETGNSGARENAAATVF
SISVIEEYRIKIGRSGAVKALVGLLESGTLRGKKDAATALFNLSIYHENK
ARIVQAGAVKHLVKLIDPESEMVDKAVAVLANLSTVTEGGLAIAREGGIP
SLVEIVETGSQRGKENAATILLQLCISSPKYCRLVLQEGAVPPLVLLSQS
GTTRAKEKAQQLLCHFRNQREGGSGRGKT
Sequence Length:
779
Sequence Checksum:
20973bc7956226df3b4d61d8ae31ccfa
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017381960.1, derives from mRNA, XM_017381960.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017381960.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017381960.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B4N1 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1013.83 bits (2620), Expect = 0.000e+0
Identity = 528/788 (67.01%), Postives = 638/788 (80.96%), Query Frame = 0
Match: A0A5B7B4N1 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1013.83 bits (2620), Expect = 0.000e+0
Identity = 528/788 (67.01%), Postives = 638/788 (80.96%), Query Frame = 0
Query: 1 MDTKSVSCLINTISRFLHLLSSFEMKNMPAQNGYRNIASSLKILKLILDNVVESKVSSDEILCKECEILDVAVNEAREFIENWSPQMSKFCSVLGGEPLLLNIQGSSVRISHILCRLLESSPSSSSLSEVQHCKQEFQCAELKKISEPIEDALKRQQRGLAPDSDNLSIIIESLSLTADLELLKESIALEKERMKAVTRKSQGDINLISQLVNLISDIRNCLVKYEIFKSINGIAVPLYFRCPLSLRLMLDPVIVATGQTYERTSIQTWLDHGLTICPITRQMLSHTNLIPNYTVKALIANWCEENKI---NLAECTRVVAKTPKMEALYLQDAIRDDRHH-SRDSSNSSSRSSLEV-NSFEKPRVNGNPGFSEKNS---ISNDSNKFDHSSPEQSCHHSRSGSASSQITSAGYVPTISSDGSRTSSKNKDERDLSGEMTSECQSSSSSKRNVSPAPSLTGKQYHSSNVLVERSAGGDRNYPRTLSMPL-DSGSNDLTTNSHVKKLIDDLRNPSSEVQTTATAELRYLAKHNLENRNIICNCGAIEPLISLLYSDVKQTQEHAVTALLNLSINGNVKTIIAEAGVIEPLIHVLETGNSGARENAAATVFSISVIEEYRIKIGRSGAVKALVGLLESGTLRGKKDAATALFNLSIYHENKARIVQAGAVKHLVKLIDPESEMVDKAVAVLANLSTVTEGGLAIAREGGIPSLVEIVETGSQRGKENAATILLQLCISSPKYCRLVLQEGAVPPLVLLSQSGTTRAKEKAQQLLCHFRNQREGGSGRGKT 779
MDT+SV CLIN+ISRF+HL+S +K MP + Y+N+AS LK LK +LD+VV+ K+ SDE LCKEC+ LD+AV EAREF+E+WSP+MSK SVL EPL++ +Q SS+ I ILC LL+SSPS+SSL+ VQHC QE QC EL++ISE IE++LK Q G P S++L IIESLSLT++ ELLKES+ALEKERMKA K +G+++ I+ +++LIS IRN +VK E FK+ING+++PLYFRCPLSL LMLDPVIVA+GQTYER SIQ WLDHGLTICP TRQ LSHTNLIPNYTVKALIANWCEEN I N ++CT ++ E + QD IR D S S++S+SRSSLEV N F+K + + + FSE+ S S ++ KFDHSSPEQS HSRS S SS ++S Y+PT S D SR SSK+++ +LSGEMTSEC +SS S +N +P L+GKQYHSS + E S G+RNYPRTLS+P D GS+DL SHV+KL++DL++ S+EVQT+A AELR+LAKHN+ENR I CGAI PL+SLLYS+VK TQEHAVTALLNLSIN N+K ++AEAG IEPLIHVL+TGN+GA+ENAAA +FS+SV++EYRIKIGRS AVKALV LL SGTLRGKKDAATALFNLSI+HENKARIVQAGAVK+LV+L+DP +EMVDKAVA+LANLST+ EG LAIAR GGIP LVE V+TGSQRGKENAA+ILLQLCI+SPKYCRLVLQEGAVPPLV LSQSGT RAKEKAQQLL HFRNQREG G+GK+
Sbjct: 15 MDTESVRCLINSISRFIHLISCQTLKTMPTEKSYKNMASFLKHLKPVLDDVVDYKIPSDEDLCKECQELDIAVKEAREFMESWSPKMSKIYSVLQSEPLVMKVQSSSLEICRILCILLQSSPSTSSLTGVQHCMQELQCMELERISEHIEESLKSQSEGTVPPSEHLIKIIESLSLTSNQELLKESVALEKERMKAQVNKMKGELDQINHIIDLISHIRNYMVKLENFKAINGVSIPLYFRCPLSLELMLDPVIVASGQTYERASIQKWLDHGLTICPKTRQTLSHTNLIPNYTVKALIANWCEENNIKLSNTSDCTNNISAPSHSEDVSAQDLIRMDSFRCSLRSNDSTSRSSLEVGNGFQKQKTDVSFRFSEEESNGCRSRETEKFDHSSPEQSYIHSRSESTSSAVSSIDYLPTASIDVSRVSSKHENVSELSGEMTSECPASSPSNKNSGFSPWLSGKQYHSSKTMAEISGNGNRNYPRTLSLPSSDPGSDDLAETSHVEKLVEDLKSQSNEVQTSAAAELRFLAKHNMENRVTIGRCGAIAPLLSLLYSEVKLTQEHAVTALLNLSINENIKAMMAEAGAIEPLIHVLKTGNAGAKENAAAALFSLSVLDEYRIKIGRSSAVKALVDLLGSGTLRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPATEMVDKAVALLANLSTIAEGCLAIARAGGIPLLVEAVDTGSQRGKENAASILLQLCINSPKYCRLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGALGKGKS 802
BLAST of XM_017381960.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BJS3 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1000.35 bits (2585), Expect = 0.000e+0
Identity = 535/787 (67.98%), Postives = 645/787 (81.96%), Query Frame = 0
Match: A0A5J5BJS3 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 1000.35 bits (2585), Expect = 0.000e+0
Identity = 535/787 (67.98%), Postives = 645/787 (81.96%), Query Frame = 0
Query: 1 MDTKSVSCLINTISRFLHLLSSFEMKNMPAQNGYRNIASSLKILKLILDNVVESKVSSDEILCKECEILDVAVNEAREFIENWSPQMSKFCSVLGGEPLLLNIQGSSVRISHILCRLLESSPSSSSLSEVQHCKQEFQCAELKKISEPIEDALKRQQRGLAPDSDNLSIIIESLSLTADLELLKESIALEKERMKAVTRKSQGDINLISQLVNLISDIRNCLVKYEIFKSINGIAVPLYFRCPLSLRLMLDPVIVATGQTYERTSIQTWLDHGLTICPITRQMLSHTNLIPNYTVKALIANWCEENKI---NLAECTRVVAKTPKMEALYLQDAIRDDRHHSRDSSNSSSRSSLEV-NSFEKPRVNGNPGFSEKNS---ISNDSNKFDHSSPEQSCHHSRSGSASSQITSAGYVPTISSDGSRTSSKNKDERDLSGEMTSECQSSSSSKRNVSPAPSLTGKQYHSSNVLVERSAGGDRNYPRTLSMPL-DSGSNDLTTNSHVKKLIDDLRNPSSEVQTTATAELRYLAKHNLENRNIICNCGAIEPLISLLYSDVKQTQEHAVTALLNLSINGNVKTIIAEAGVIEPLIHVLETGNSGARENAAATVFSISVIEEYRIKIGRSGAVKALVGLLESGTLRGKKDAATALFNLSIYHENKARIVQAGAVKHLVKLIDPESEMVDKAVAVLANLSTVTEGGLAIAREGGIPSLVEIVETGSQRGKENAATILLQLCISSPKYCRLVLQEGAVPPLVLLSQSGTTRAKEKAQQLLCHFRNQREGGSGRGKT 779
MDTKSV CLIN+ISRF+HL+S +K MP Q YRN+AS LK LK +LD++V+ K++SDE+LCKECE LD+AVNEAREF+E WSP+ SK CSVL EPL++ IQ SS I ILCRLL+SSPS+SSL+ VQHC QE QC EL++ISE IE++LKRQ+ G P S++L IIESLSLT++ ELLKES+ALEKERMKA K +G+++ IS +++L+S IRNC+VK E FK+ING+++PLYFRCPLSL+LMLDPVIVA+GQTYER SIQ WLDHGLTICP TRQ LSHTNLIPNYTVKALIANWCEEN I N ++ T ++ + E + QD IR D HS S +S+SRSSLEV N F+K + + FSE+ S S ++ KFDHSSPEQS HSRS S SS I+S Y+PT S D SR SSK+++ +LSGEMTSEC +SS S ++ +P L+GKQYHSS + E + G+ NYPRTLS+P D GS+DL SHV+KL++DL++ S+EVQT+A AELR+LAKHN+ENR II CGAI PL+SLL+S+VK TQEHAVTALLNLSIN N+K +IAEAG IEPLIHVL+TGN+GA+ENAAA +FS+SV+EEYRIKIGRS AVKALV LL SGTLRGKKDAATALFNLSI+HENKARI+QAGAVK+LV+L+DP +EMVDKAVA+LANLSTV+EG LAIAR GGIP LVE+V+TGSQRGKENAA+ILLQLCI+SPK+CRLVLQEGAVPPLV LSQSGT RAKEKAQQLL HFRNQREG G+GK+
Sbjct: 385 MDTKSVRCLINSISRFIHLVSCQTLKTMPTQKSYRNMASLLKHLKSMLDDLVDYKITSDEVLCKECEELDIAVNEAREFMERWSPRASKICSVLQSEPLMMKIQSSSHEICRILCRLLQSSPSTSSLTSVQHCMQELQCLELERISEHIEESLKRQREGTVPPSEHLIKIIESLSLTSNQELLKESVALEKERMKAQVNKMKGELDQISHIIDLMSHIRNCMVKLERFKAINGVSIPLYFRCPLSLKLMLDPVIVASGQTYERASIQMWLDHGLTICPKTRQTLSHTNLIPNYTVKALIANWCEENNIKLSNTSDSTNNISASSHFEDVSAQDLIRMDSFHSSHSHDSTSRSSLEVGNGFQKQKNGVSFRFSEEESNGCRSRETEKFDHSSPEQSYVHSRSESTSSAISSIDYLPTTSIDVSRVSSKHENVSELSGEMTSECPASSPSNKDSGFSPWLSGKQYHSSKTMAEMAGNGNLNYPRTLSLPSSDPGSDDLAATSHVEKLVEDLKSQSNEVQTSAAAELRFLAKHNMENRVIIGRCGAIAPLLSLLHSEVKLTQEHAVTALLNLSINENIKAMIAEAGAIEPLIHVLKTGNAGAKENAAAALFSLSVLEEYRIKIGRSSAVKALVDLLGSGTLRGKKDAATALFNLSIFHENKARIIQAGAVKYLVELMDPATEMVDKAVALLANLSTVSEGCLAIARAGGIPLLVEVVDTGSQRGKENAASILLQLCINSPKHCRLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGAMGKGKS 1171
BLAST of XM_017381960.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B465 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 991.875 bits (2563), Expect = 0.000e+0
Identity = 511/788 (64.85%), Postives = 629/788 (79.82%), Query Frame = 0
Match: A0A5B7B465 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 991.875 bits (2563), Expect = 0.000e+0
Identity = 511/788 (64.85%), Postives = 629/788 (79.82%), Query Frame = 0
Query: 1 MDTKSVSCLINTISRFLHLLSSFEMKNMPAQNGYRNIASSLKILKLILDNVVESKVSSDEILCKECEILDVAVNEAREFIENWSPQMSKFCSVLGGEPLLLNIQGSSVRISHILCRLLESSPSSSSLSEVQHCKQEFQCAELKKISEPIEDALKRQQRGLAPDSDNLSIIIESLSLTADLELLKESIALEKERMKAVTRKSQGDINLISQLVNLISDIRNCLVKYEIFKSINGIAVPLYFRCPLSLRLMLDPVIVATGQTYERTSIQTWLDHGLTICPITRQMLSHTNLIPNYTVKALIANWCEENKI---NLAECTRVVAKTPKMEALYLQDAI-RDDRHHSRDSSNSSSRSSLEV-NSFEKPRVNGNPGFSEKNS---ISNDSNKFDHSSPEQSCHHSRSGSASSQITSAGYVPTISSDGSRTSSKNKDERDLSGEMTSECQSSSSSKRNVSPAPSLTGKQYHSSNVLVERSAGGDRNYPRTLSMPLDS-GSNDLTTNSHVKKLIDDLRNPSSEVQTTATAELRYLAKHNLENRNIICNCGAIEPLISLLYSDVKQTQEHAVTALLNLSINGNVKTIIAEAGVIEPLIHVLETGNSGARENAAATVFSISVIEEYRIKIGRSGAVKALVGLLESGTLRGKKDAATALFNLSIYHENKARIVQAGAVKHLVKLIDPESEMVDKAVAVLANLSTVTEGGLAIAREGGIPSLVEIVETGSQRGKENAATILLQLCISSPKYCRLVLQEGAVPPLVLLSQSGTTRAKEKAQQLLCHFRNQREGGSGRGKT 779
MDT+SV CLIN+ISRF+HL+S +K MP + Y+N+AS LK LK +LD+VV+ K+ SDE LCKEC+ LD+AV EAREF+E+WSP+MSK SVL EPL++ +Q SS+ I ILC LL+SSPS+SSL+ VQHC QE QC EL++ISE IE++LK Q G P S++L IIESLSLT++ ELLKES+ALEKERMKA K +G+++ I+ +V+LIS IRNC+VK E FK+ING+ +PLYFRCPL L LMLDPVIVA+GQTYER SIQ WLDHGLTICP TRQ LSHTNLIPN TVKALIANWC+EN I N + CT ++ E + QD I D+ H S S++S+SRSSLEV N F+K + + + F++K S S + KFDHSSP+Q+ H RS S S ++ YVP S D SR SSK+++ +LSGEMTSEC +SS SK+N +P L GKQ+HSS ++ E + G+ NYPRTLS+P G +DL + SHV+KL++DL++ S EVQT+A AELR+LAKH++ENR I CGAI PL+SLL S+VK TQEHAVTALLNLSIN N+K++IAEAG +EPLIHVL+TGN+GA+ENAAA +FS+SV+EEYRIKIGRS AV++LV LL SGT+RGKKDAATALFNLSI+HENKARIVQAGAVK+LV+L+DP +EMVDKAVA+LANLST+ EG LAIAR GGIP LVE+V+TGS RGKENAA+ILLQLCI+SPK+CRLVLQEGAVPPLV LSQSGT RAKEKAQQLL HFRNQREG G+GK+
Sbjct: 15 MDTESVRCLINSISRFIHLISCQTLKTMPTEKSYKNMASFLKHLKPVLDDVVDYKIPSDEDLCKECQELDIAVKEAREFMESWSPKMSKIYSVLQSEPLVMKVQSSSLEICRILCILLQSSPSTSSLTGVQHCMQELQCMELERISEHIEESLKSQSEGTVPPSEHLIKIIESLSLTSNQELLKESVALEKERMKAQVNKMKGELDQINHIVDLISHIRNCMVKLESFKTINGVPIPLYFRCPLLLELMLDPVIVASGQTYERASIQKWLDHGLTICPKTRQTLSHTNLIPNNTVKALIANWCKENNIKVSNTSNCTDNISAPSHSEDVPAQDPICMDNFHCSSHSNDSTSRSSLEVGNGFQKQKNDVSFRFNKKESNGCRSRRTEKFDHSSPKQTYTHRRSESTLSAVSCIDYVPATSVDVSRVSSKHENVGELSGEMTSECPASSPSKKNSGFSPWLLGKQFHSSKIMAELGSNGNHNYPRTLSLPSSELGCDDLVSTSHVEKLVEDLKSQSDEVQTSAAAELRFLAKHDMENRAAIGRCGAIAPLLSLLCSEVKLTQEHAVTALLNLSINENIKSMIAEAGAMEPLIHVLKTGNAGAKENAAAALFSLSVLEEYRIKIGRSSAVRSLVDLLGSGTIRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPATEMVDKAVALLANLSTIAEGCLAIARAGGIPLLVEVVDTGSHRGKENAASILLQLCINSPKFCRLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGALGKGKS 802
BLAST of XM_017381960.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B6C6 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}) (Fragment))
HSP 1 Score: 958.748 bits (2477), Expect = 0.000e+0
Identity = 498/750 (66.40%), Postives = 607/750 (80.93%), Query Frame = 0
Match: A0A5B7B6C6 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}) (Fragment))
HSP 1 Score: 958.748 bits (2477), Expect = 0.000e+0
Identity = 498/750 (66.40%), Postives = 607/750 (80.93%), Query Frame = 0
Query: 1 MDTKSVSCLINTISRFLHLLSSFEMKNMPAQNGYRNIASSLKILKLILDNVVESKVSSDEILCKECEILDVAVNEAREFIENWSPQMSKFCSVLGGEPLLLNIQGSSVRISHILCRLLESSPSSSSLSEVQHCKQEFQCAELKKISEPIEDALKRQQRGLAPDSDNLSIIIESLSLTADLELLKESIALEKERMKAVTRKSQGDINLISQLVNLISDIRNCLVKYEIFKSINGIAVPLYFRCPLSLRLMLDPVIVATGQTYERTSIQTWLDHGLTICPITRQMLSHTNLIPNYTVKALIANWCEENKI---NLAECTRVVAKTPKMEALYLQDAIRDDRHH-SRDSSNSSSRSSLEV-NSFEKPRVNGNPGFSEKNS---ISNDSNKFDHSSPEQSCHHSRSGSASSQITSAGYVPTISSDGSRTSSKNKDERDLSGEMTSECQSSSSSKRNVSPAPSLTGKQYHSSNVLVERSAGGDRNYPRTLSMP-LDSGSNDLTTNSHVKKLIDDLRNPSSEVQTTATAELRYLAKHNLENRNIICNCGAIEPLISLLYSDVKQTQEHAVTALLNLSINGNVKTIIAEAGVIEPLIHVLETGNSGARENAAATVFSISVIEEYRIKIGRSGAVKALVGLLESGTLRGKKDAATALFNLSIYHENKARIVQAGAVKHLVKLIDPESEMVDKAVAVLANLSTVTEGGLAIAREGGIPSLVEIVETGSQRGKENAATILLQLCISSPKYCRLVLQEGAV 741
MDTKSV CLIN+ISRF+HL+S +K MP Q YRN+AS LK LK +LD+VV+ K+ SDE+LCKECE LD++VNEAREF+E+WSP+MSK CSVL EPL++ IQ SS+ I +LCRLL+SSPS+SSL+ VQHC Q+ QC EL++ISE IE++LK Q G P S++L IIESLSLT++ ELLKES+ALEKER KA K +G+++ I+ +V+LIS IRNC+VK E FK+ING+ +PLYFRCPL L LMLDPVIVA+GQTYER SIQ WLDHGLTICP TRQ LSHTNLIPNYTVKALIANWCEEN I N ++CT ++ E + QD IR D S S++S+SRSSLEV N F+K + + + FSE+ S S ++ KFDHSSPEQS HSRS S SS ++S Y+PT S D SR SSK+++ +LSGEMTSEC +SS S +N +P L+GKQYHSS + E S G+RNYPRTLS+P D GS+DL SHV+KL++DL++ S+EVQT+A AELR+LAKHN+ENR I CGAI PL+SLLYS+VK TQEHAVTALLNLSIN N+K ++AEAG IEPLIHVL+TGN+GA+ENAAA +FS+SV+EEYRIKIGRS AV++LV LL SGT+RGKKDAATALFNLSI+HENKARIVQAGAVK+LV+L+DP +EMVDKAVA+LANLST+ EG LAIAR GGIP LVE+V+TGS RGKENAA+ILLQLCI+SPK+CRLVLQEGAV
Sbjct: 15 MDTKSVRCLINSISRFIHLVSCQTLKTMPTQKSYRNMASLLKDLKSMLDDVVDYKIPSDEVLCKECEELDISVNEAREFMESWSPRMSKICSVLQSEPLVIKIQTSSLEICRLLCRLLQSSPSTSSLTGVQHCMQKLQCLELERISEHIEESLKSQSEGTVPPSEHLIKIIESLSLTSNQELLKESVALEKERKKAQVNKMKGELDQINHIVDLISHIRNCMVKLESFKTINGVPIPLYFRCPLLLELMLDPVIVASGQTYERASIQKWLDHGLTICPKTRQTLSHTNLIPNYTVKALIANWCEENNIKLSNTSDCTNNISAPSHSEDVSAQDLIRMDSFRCSSRSNDSTSRSSLEVGNGFQKQKTDVSFRFSEEESNGCRSRETEKFDHSSPEQSYIHSRSESTSSAVSSIDYLPTASIDVSRVSSKHENVSELSGEMTSECPASSPSNKNSGFSPWLSGKQYHSSKTMAEISGNGNRNYPRTLSLPSSDPGSDDLAETSHVEKLVEDLKSQSNEVQTSAAAELRFLAKHNMENRVTIGRCGAIAPLLSLLYSEVKLTQEHAVTALLNLSINENIKAMMAEAGAIEPLIHVLKTGNAGAKENAAAALFSLSVLEEYRIKIGRSSAVRSLVDLLGSGTIRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPATEMVDKAVALLANLSTIAEGCLAIARAGGIPLLVEVVDTGSHRGKENAASILLQLCINSPKFCRLVLQEGAV 764
BLAST of XM_017381960.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C5R2 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 932.169 bits (2408), Expect = 0.000e+0
Identity = 495/787 (62.90%), Postives = 612/787 (77.76%), Query Frame = 0
Match: A0A5J5C5R2 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 932.169 bits (2408), Expect = 0.000e+0
Identity = 495/787 (62.90%), Postives = 612/787 (77.76%), Query Frame = 0
Query: 1 MDTKSVSCLINTISRFLHLLSSFEMKNMPAQNGYRNIASSLKILKLILDNVVESKVSSDEILCKECEILDVAVNEAREFIENWSPQMSKFCSVLGGEPLLLNIQGSSVRISHILCRLLESSPSSSSLSEVQHCKQEFQCAELKKISEPIEDALKRQQRGLAPDSDNLSIIIESLSLTADLELLKESIALEKERMKAVTRKSQGDINLISQLVNLISDIRNCLVKYEIFKSINGIAVPLYFRCPLSLRLMLDPVIVATGQTYERTSIQTWLDHGLTICPITRQMLSHTNLIPNYTVKALIANWCEENKI---NLAECTRVVAKTPKMEALYLQDAIRDDRHHSRDSSNSSSRSSLEV-NSFEKPRVNGNPGFSEK---NSISNDSNKFDHSSPEQSCHHSRSGSASSQITSAGYVPTISSDGSRTSSKNKDERDLSGEMTSECQSSSSSKRNVSPAPSLTGKQYHSSNVLVERSAGGDRNYPRTLSMPLDS-GSNDLTTNSHVKKLIDDLRNPSSEVQTTATAELRYLAKHNLENRNIICNCGAIEPLISLLYSDVKQTQEHAVTALLNLSINGNVKTIIAEAGVIEPLIHVLETGNSGARENAAATVFSISVIEEYRIKIGRSGAVKALVGLLESGTLRGKKDAATALFNLSIYHENKARIVQAGAVKHLVKLIDPESEMVDKAVAVLANLSTVTEGGLAIAREGGIPSLVEIVETGSQRGKENAATILLQLCISSPKYCRLVLQEGAVPPLVLLSQSGTTRAKEKAQQLLCHFRNQREGGSGRGKT 779
MDT+SV CLIN+ISRF+HL+S +K MP + Y+NIAS LK L+ +LD+VV+ K+ SDE+LCKECE LD+AV EAREF+E+WSP+MSK SVL EP + IQ SS+ I ILC LL+SSPS+SSL+ VQHC QE QC EL++ISE I +++K Q G P S++L IIESLSLT++ ELLKES+ALEKERMKA K +G I+ +++LIS IR+C+VK E FK+ING+ +PLYFRCPL L LMLDPVIVA+GQTYER SIQ WLDHGLTICP TRQ LSHTNLIPNYTVKALIANWC+EN I N ++CT ++ E + QD + S ++S+S SSL+V N F+K + + FSE+ S + K DHSSP+Q+ H R+ S S ++S Y+PT S D SR SS++++ +LSGE+TSEC SSS S +N +P L G Q+H S + E + + NYPRTLS+P + G +DL + S+VKK+++DL + S EVQT+A AELR+L+KHN+ENR I CGAI PL+SLLYS+VK TQEHAVTALLNLSIN N+K++IAEAG +EPLIHVL+TGN+GA+ENAAA +FS+SV+EEYRIKIGRS AVKALV LL GT+RGKKDAATALFNLSI+HENKARIVQAGAVK+LV+L+DP +EMVDKAVA+LANLST+ EG LAIAR G IP LVE+V+TGSQRGKENAA+ILLQLCI+S K+C LVLQEGAVPPLV LSQSGT RAKEKAQQLL HFRNQRE G+GK+
Sbjct: 1 MDTESVRCLINSISRFIHLVSCQTLKTMPTEKSYKNIASLLKHLRPVLDDVVDCKIPSDEVLCKECEELDIAVKEAREFMESWSPKMSKIYSVLQSEPFVKKIQSSSLEICRILCFLLQSSPSTSSLTGVQHCMQELQCMELERISEHILESMKSQIEGTVPPSEHLLKIIESLSLTSNQELLKESMALEKERMKAEVNKMKGKQGQINHIIDLISHIRSCMVKLEGFKAINGVPIPLYFRCPLLLELMLDPVIVASGQTYERASIQKWLDHGLTICPKTRQTLSHTNLIPNYTVKALIANWCKENNIKVSNTSDCTDNISAPSHSEDVSAQDFL-----CSSHRNDSASTSSLKVGNGFQKQKNDVPFRFSEEEPSGCQSRGTEKCDHSSPKQTHIHRRNESNLSAVSSIDYLPTSSIDLSRVSSEHENVCELSGELTSECPSSSPSNKNSGFSPWLLGNQFHCSKTMAELAGNKNHNYPRTLSLPSSTLGCDDLVSISYVKKVVEDLESQSYEVQTSAAAELRFLSKHNMENRVTIGCCGAIVPLLSLLYSEVKLTQEHAVTALLNLSINENIKSMIAEAGAMEPLIHVLKTGNAGAKENAAAALFSLSVLEEYRIKIGRSSAVKALVDLLGLGTIRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPATEMVDKAVALLANLSTIAEGCLAIARAGAIPLLVEVVDTGSQRGKENAASILLQLCINSTKFCLLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREVAVGKGKS 782
BLAST of XM_017381960.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HZL0 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 917.146 bits (2369), Expect = 0.000e+0
Identity = 480/788 (60.91%), Postives = 598/788 (75.89%), Query Frame = 0
Match: F6HZL0 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 917.146 bits (2369), Expect = 0.000e+0
Identity = 480/788 (60.91%), Postives = 598/788 (75.89%), Query Frame = 0
Query: 1 MDTKSVSCLINTISRFLHLLSSFEMKNMPAQNGYRNIASSLKILKLILDNVVESKVSSDEILCKECEILDVAVNEAREFIENWSPQMSKFCSVLGGEPLLLNIQGSSVRISHILCRLLESSPSSSSLSEVQHCKQEFQCAELKKISEPIEDALKRQQRGLAPDSDNLSIIIESLSLTADLELLKESIALEKERMKAVTRKSQGDINLISQLVNLISDIRNCLVKYEIFKSINGIAVPLYFRCPLSLRLMLDPVIVATGQTYERTSIQTWLDHGLTICPITRQMLSHTNLIPNYTVKALIANWCEENKINLA---ECTRVVAKTPKMEALYLQDAIRDDRHH-SRDSSNSSSRSSLEV-NSFEKPRVNGNPGFSEKNS---ISNDSNKFDHSSPEQSCHHSRSGSASSQITSAGYVPTISSDGSRTSSKNKDERDLSGEMTSECQSSSSSKRNVSPAPSLTGKQYHSSNVLVERSAGGDRNYPRTLSMPL-DSGSNDLTTNSHVKKLIDDLRNPSSEVQTTATAELRYLAKHNLENRNIICNCGAIEPLISLLYSDVKQTQEHAVTALLNLSINGNVKTIIAEAGVIEPLIHVLETGNSGARENAAATVFSISVIEEYRIKIGRSGAVKALVGLLESGTLRGKKDAATALFNLSIYHENKARIVQAGAVKHLVKLIDPESEMVDKAVAVLANLSTVTEGGLAIAREGGIPSLVEIVETGSQRGKENAATILLQLCISSPKYCRLVLQEGAVPPLVLLSQSGTTRAKEKAQQLLCHFRNQREGGSGRGKT 779
MDTKSV CLIN+ISRF+HL+S +K MP Q RN+ LK+LK +LD+VV K+ SDEIL KECE LD+AVNEAREF+ENW P+MSK SVL E L++ IQ SS+ I ILCRLL SSPS S+L+ +QHC Q+ Q E K+ISE IE AL+ Q+ + P + L+ IIESLSLT+ ELLKES+A+E+ERM A K+ +++ I+Q+V L+S IR+C+V+ F++ING+ +P YFRCPLSL LM+DPVIVA+GQTYER+SIQ WLD GL ICP TRQ L+H NLIPNYTVKALI NWCEEN I L+ E T + ++ + QD I D S SSN +SRSSLEV N EK +V+ + F + S S + K + SPEQS HSR+ S SS ++S +PT S++ SR S+K ++ LSGE+TSEC +S S+ R++ +P +GKQ+HSS VE + G PR LS+P D +DLTT+SHV+KL++DL++ S+E+QT A +ELR LAKHN+ENR II CGAI PL+ LLYS+VKQTQE+AVTALLNLSIN K IIAEAG IE LIHVL++GN+GA+EN+AAT+FS+SV+EEY+ KIG SGAVKALV LL SGTLRGKKDAATALFNLSI HENK RI+QAGAVK+LV+L++P + MVDKAVA+LANLS ++EG AI REGGIP LVE+VETGS RGKENAA+ILLQLCI+SPK+C LVLQEGA+PPLV LSQSGT RAKEKAQQLL HFRNQREG + +GK+
Sbjct: 1 MDTKSVRCLINSISRFIHLVSCQTLKPMPIQKDCRNMVGLLKLLKPVLDDVVNCKIPSDEILFKECEELDMAVNEAREFVENWCPKMSKIFSVLQSEQLVMKIQSSSLEICFILCRLLHSSPSVSNLTSIQHCMQKLQHLEQKRISEYIEQALRSQRDEIIPHTQQLAKIIESLSLTSKQELLKESVAVERERMNAQVNKTAYELDQINQIVELVSHIRDCMVRLGGFEAINGVRIPSYFRCPLSLELMMDPVIVASGQTYERSSIQKWLDQGLMICPKTRQTLAHANLIPNYTVKALIENWCEENNITLSGTSEHTNITPVPSPLDHVSAQDVIGMDSFRCSIHSSNCTSRSSLEVGNGIEKLKVDVSTRFGGEESNVCKSREPEKLERQSPEQSYIHSRTESTSSAVSSIDSLPTASTELSRISNKQENGTGLSGEITSECHASPSN-RDLEFSPWFSGKQFHSSKTKVEMVSNGKCGPPRILSLPFSDPKFDDLTTSSHVEKLVEDLKSQSNELQTVAASELRLLAKHNMENRIIIGRCGAIAPLVLLLYSEVKQTQENAVTALLNLSINDANKVIIAEAGAIESLIHVLKSGNAGAKENSAATLFSLSVLEEYKAKIGCSGAVKALVDLLGSGTLRGKKDAATALFNLSICHENKPRIIQAGAVKYLVQLMEPATGMVDKAVALLANLSIISEGRFAIVREGGIPLLVELVETGSVRGKENAASILLQLCINSPKFCTLVLQEGAIPPLVALSQSGTPRAKEKAQQLLSHFRNQREGAAAKGKS 787
BLAST of XM_017381960.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2MJ10 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 913.679 bits (2360), Expect = 0.000e+0
Identity = 491/787 (62.39%), Postives = 606/787 (77.00%), Query Frame = 0
Match: A0A7N2MJ10 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 913.679 bits (2360), Expect = 0.000e+0
Identity = 491/787 (62.39%), Postives = 606/787 (77.00%), Query Frame = 0
Query: 1 MDTKSVSCLINTISRFLHLLSSFEMKNMPAQNGYRNIASSLKILKLILDNVVESKVSSDEILCKECEILDVAVNEAREFIENWSPQMSKFCSVLGGEPLLLNIQGSSVRISHILCRLLESSPSSSSLSEVQHCKQEFQCAELKKISEPIEDALKRQQRGLAPDSDNLSIIIESLSLTADLELLKESIALEKERMKAVTRKSQGDINLISQLVNLISDIRNCLVKYEIFKSINGIAVPLYFRCPLSLRLMLDPVIVATGQTYERTSIQTWLDHGLTICPITRQMLSHTNLIPNYTVKALIANWCEENKINL--AECTRVVAKTPKMEALYLQDAIRDDRH-HSRDSSNSSSRSSLEV-NSFEKPRVNGNPGFSEKNS---ISNDSNKFDHSSPEQSCHHSRSGSASSQITSAGYVPTISSDGSRTSSKNKDERDLSGEMTSECQSSSSSKRNVSPAPSLTGKQYHSSNVLVERSAGGDRNYPRTLSMPL-DSGSNDLTTNSHVKKLIDDLRNPSSEVQTTATAELRYLAKHNLENRNIICNCGAIEPLISLLYSDVKQTQEHAVTALLNLSINGNVKTIIAEAGVIEPLIHVLETGNSGARENAAATVFSISVIEEYRIKIGRSGAVKALVGLLESGTLRGKKDAATALFNLSIYHENKARIVQAGAVKHLVKLIDPESEMVDKAVAVLANLSTVTEGGLAIAREGGIPSLVEIVETGSQRGKENAATILLQLCISSPKYCRLVLQEGAVPPLVLLSQSGTTRAKEKAQQLLCHFRNQREGGSGRGKT 779
MDT SV CLIN+ISRF+ L+S MK MP Q YR++ +LK+LK +LD VV+ K+ SDEILCKECE LD AVNE REF+ENWSP+MSK CSVL EPLL+ I+ SS+ I HILCRLL+SS S+ SLS VQ+C QE QC + ++++E IE+A+ Q+ + P + +L IIE L+LT + ELLKESI +EKER+ A K++G+++ I Q+VNL+S IRNC+VK + F++ +G+ +P YFRCPLS LMLDPVIVA+GQTYER+SIQ WLDHGLTICP TRQ L+HTNLIPNYTVKA+I+NWCEEN I +E T V+ + QD IR D S +SNS SRSS EV N FEK + + + + KNS S ++ KF H SPEQS HSRS SASS I+S Y+P +S + R SSK ++ +LSGE+T+EC +S + L GK++ + + VE + + NY R S+P DSGS+++T+ SHVKKLI+DL++ S+EVQTTA ELR LAKHN+ENR II CGAI PL+SLL S++K+TQEHAVTALLNLSIN N K +IAEAG IEPLIHVL+TGN GA+EN+AAT+FS+SV+EEY++KIGRSGAVKALV LL GTLRGKKDAATALFNLSI HENKARIVQAGAVK+LVKL+DP + MVDKAVA+LANLST+ EG LAI RE GIP LVEIVE+GSQRGKENAA++LLQLC++S KYC LVLQEGAVPPLV LSQSGT RAKEKAQQLL HFRNQREG +G+GK+
Sbjct: 1 MDTSSVKCLINSISRFILLVSCQTMKAMPIQKDYRDLVGALKLLKAVLDEVVDYKIPSDEILCKECEELDTAVNETREFMENWSPKMSKLCSVLWSEPLLMKIRSSSIDICHILCRLLQSSSSTISLSNVQNCMQELQCLKQERVTEYIEEAIISQRDNIVPCTKHLLKIIEFLNLTPNQELLKESICVEKERINAQVNKAKGELDQIYQIVNLVSHIRNCMVKIQRFEARSGVPIPSYFRCPLSSELMLDPVIVASGQTYERSSIQKWLDHGLTICPKTRQTLTHTNLIPNYTVKAMISNWCEENNIKTYNSERTEFVSVPSLSDHASPQDLIRTDSSPFSLHNSNSMSRSSHEVGNGFEKQKNDASSRLNGKNSNGFQSRETEKFYHPSPEQSYIHSRSESASSAISSVDYMPPVSDEVPRISSKRENVNELSGEITTECLDTSPQCKEPGFPSWLPGKKFDNLKIEVEVAGNINHNYLRANSLPFSDSGSDEVTSASHVKKLIEDLKSQSNEVQTTAAEELRLLAKHNMENRVIIGQCGAIAPLVSLLSSEMKRTQEHAVTALLNLSINENNKAMIAEAGAIEPLIHVLKTGNDGAKENSAATLFSLSVLEEYKVKIGRSGAVKALVDLLHLGTLRGKKDAATALFNLSILHENKARIVQAGAVKYLVKLMDPATGMVDKAVALLANLSTIGEGRLAIGREEGIPLLVEIVESGSQRGKENAASVLLQLCLNSSKYCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGATGKGKS 787
BLAST of XM_017381960.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PP79 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 905.975 bits (2340), Expect = 0.000e+0
Identity = 469/782 (59.97%), Postives = 598/782 (76.47%), Query Frame = 0
Match: A0A2R6PP79 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 905.975 bits (2340), Expect = 0.000e+0
Identity = 469/782 (59.97%), Postives = 598/782 (76.47%), Query Frame = 0
Query: 1 MDTKSVSCLINTISRFLHLLSSFEMKNMPAQNGYRNIASSLKILKLILDNVVESKVSSDEILCKECEILDVAVNEAREFIENWSPQMSKFCSVLGGEPLLLNIQGSSVRISHILCRLLESSPSSSSLSEVQHCKQEFQCAELKKISEPIEDALKRQQRGLAPDSDNLSIIIESLSLTADLELLKESIALEKERMKAVTRKSQGDINLISQLVNLISDIRNCLVKYEIFKSINGIAVPLYFRCPLSLRLMLDPVIVATGQTYERTSIQTWLDHGLTICPITRQMLSHTNLIPNYTVKALIANWCEENKINLAECTR----VVAKTPKMEALYLQDAIRDDRHH-SRDSSNSSSRSSLEV-NSFEKPRVNGNPGFSEKNS---ISNDSNKFDHSSPEQSCHHSRSGSASSQITSAGYVPTISSDGSRTSSKNKDERDLSGEMTSECQSSSSSKRNVSPAPSLTGKQYHSSNVLVERSAGGDRNYPRTLSMPLD-SGSNDLTTNSHVKKLIDDLRNPSSEVQTTATAELRYLAKHNLENRNIICNCGAIEPLISLLYSDVKQTQEHAVTALLNLSINGNVKTIIAEAGVIEPLIHVLETGNSGARENAAATVFSISVIEEYRIKIGRSGAVKALVGLLESGTLRGKKDAATALFNLSIYHENKARIVQAGAVKHLVKLIDPESEMVDKAVAVLANLSTVTEGGLAIAREGGIPSLVEIVETGSQRGKENAATILLQLCISSPKYCRLVLQEGAVPPLVLLSQSGTTRAKEKAQQLLCHFRNQREG 772
MDT SV C++N+ISRF+HL+S +K +P Y N+ S LK+LK +LD+VV+ K+ SD+ L KECE LD+ VNEAREF+E+WS +MSK CSVL E L++ +Q SS I I+ RLL+S PS+S + VQ E QC +L+++SE IE+ALK Q+ G AP S+ L+ IIESL LTA+ ELLKESIALEKER A K++G+I+ I+ ++ L+S +R+C+VK E F+++NG+ VP YFRCPLSL LM DPVIVA+GQTY+R SIQ WLD+GL ICP +RQMLSHTNLIPNYTVKALIANWC++N I + + + E QD I + S S++S+SRSSLEV N F+K +++ + FSE+ S S ++ FD SS EQS HSR+ SASS +++ ++P + SR SSK+++ ++SGE+ SEC++SS S +N +P+L+ K +HSS + E ++ G+ NY +T S+P SG +D+TT SHV+KL++DL++ S+ VQT+A AELR+LAKHN ENR II GAI L+SLLYS+VK TQEHAVTA+LNLSIN NVK IAEAG IEPLIHVL TG+SGA+ENAAA +FS+SV+EEYRIKIGRS AVKALV LL GTLRGKKDAATALFNLSI+HENKARI+QAGAVK+LV+L+DP +EMVDKAVA+LANLST+TEG AI R GGIP LVEI+ETGS RGKENA++IL QLCI++ K+CRLVLQEGAVPPLV LSQ+GT RAKEKAQQLL HFRNQREG
Sbjct: 16 MDTTSVRCVVNSISRFIHLVSCQTIKTVPTHKSYGNMVSLLKLLKPVLDDVVDDKIPSDDGLYKECEELDIIVNEAREFVESWSLKMSKICSVLKSEELVMKMQHSSQEICRIVRRLLQSLPSTSCFTGVQ----ELQCLKLERVSECIEEALKSQREGRAPPSEQLTRIIESLGLTANQELLKESIALEKERTMAQVNKAKGEIDQINNIIELMSHVRDCMVKVENFRAMNGVCVPSYFRCPLSLELMFDPVIVASGQTYDRASIQKWLDNGLYICPKSRQMLSHTNLIPNYTVKALIANWCDQNHIKFSNTLERNNTITPAVSQSENAPCQDLIHTESFRCSSHSNDSTSRSSLEVGNEFQKLKIDASFRFSEEESNGCRSRETENFDLSSSEQSYVHSRTESASSVVSTIDFLPAAPTYVSRISSKHENGSEVSGEIISECEASSPSYKNSEFSPNLSEKLFHSSKTMAEVASNGNSNYRKTFSLPSSKSGCDDVTTTSHVEKLVEDLKSQSNAVQTSAAAELRFLAKHNTENRVIIGCSGAIALLLSLLYSEVKLTQEHAVTAVLNLSINENVKAKIAEAGAIEPLIHVLRTGSSGAQENAAAALFSLSVLEEYRIKIGRSSAVKALVDLLHMGTLRGKKDAATALFNLSIFHENKARIIQAGAVKYLVELMDPTTEMVDKAVALLANLSTITEGCTAIVRAGGIPVLVEIIETGSNRGKENASSILFQLCINNKKFCRLVLQEGAVPPLVALSQTGTPRAKEKAQQLLSHFRNQREG 793
BLAST of XM_017381960.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QSE2 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 900.582 bits (2326), Expect = 0.000e+0
Identity = 476/779 (61.10%), Postives = 594/779 (76.25%), Query Frame = 0
Match: A0A2R6QSE2 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 900.582 bits (2326), Expect = 0.000e+0
Identity = 476/779 (61.10%), Postives = 594/779 (76.25%), Query Frame = 0
Query: 1 MDTKSVSCLINTISRFLHLLSSFEMKNMPAQNGYRNIASSLKILKLILDNVVESKVSSDEILCKECEILDVAVNEAREFIENWSPQMSKFCSVLGGEPLLLNIQGSSVRISHILCRLLESSPSSSSLSEVQHCKQEFQCAELKKISEPIEDALKRQQRGLAPDSDNLSIIIESLSLTADLELLKESIALEKERMKAVTRKSQGDINLISQLVNLISDIRNCLVKYEIFKSINGIAVPLYFRCPLSLRLMLDPVIVATGQTYERTSIQTWLDHGLTICPITRQMLSHTNLIPNYTVKALIANWCEENKINLAEC-TRVVAKTP---KMEALYLQDAIRDDRHHSRDSSN-SSSRSSLEV-NSFEKPRVNGNPGFSEKNSISNDSNKFDHSSPEQSCHHSRSGSASSQITSAGYVPTISSDGSRTSSKNKDERDLSGEMTSECQSSSSSKRNVSPAPSLTGKQYHSSNVLVERSAGGDRNYPRTLSMPLD-SGSNDLTTNSHVKKLIDDLRNPSSEVQTTATAELRYLAKHNLENRNIICNCGAIEPLISLLYSDVKQTQEHAVTALLNLSINGNVKTIIAEAGVIEPLIHVLETGNSGARENAAATVFSISVIEEYRIKIGRSGAVKALVGLLESGTLRGKKDAATALFNLSIYHENKARIVQAGAVKHLVKLIDPESEMVDKAVAVLANLSTVTEGGLAIAREGGIPSLVEIVETGSQRGKENAATILLQLCISSPKYCRLVLQEGAVPPLVLLSQSGTTRAKEKAQQLLCHFRNQREG 772
MDT SV C++N+ISRF+HL+S +K +P Q RN+AS LK+LK +LDNVV+ K+ SDE L KECE LD AVNEAREF+E+WS +MSK CSVL E L++ +Q SS+ I I+C+LL+SSPSSS + VQHC QE QC +L+++SE IE+ALK Q G S+ L+ IIESL LTA ELLKESIALEKERM A K++GDI+ I+ ++ L+ IR+C+VK E F+ +NG+ VP YFRCPLSL LMLDPVIVA+GQTY+R SIQ WLD+GL ICP TRQMLSHTNLIPNYTVKALIA+WCE+N I + R A TP + E QD + + SN S+SRSSLEV N F+K + N S ++ FDHSS EQS HSR+ SASS ++S ++P S+D SR S K+++ ++SGE+ SEC +SS +N +P+L+ K ++ S + E ++ G+ NYPRT S+P SG +D+TT SHV+KL++DL++ S+ VQT+ATAELR+LAKHN ENR II GAI L+SLLYS++K TQEHAVTALLNLSIN NVK IAEAG I PLIHVL TG+SGA+ENAAA +FS+SV++EYRIKIGRS AVKALV LL GTLRGKKDAATALFNLSI+HENKARI+QAGAVK+LV+L+D +EMVDKAVA+LANLST+ EG AI R GG+P L+E++ETGS RGKENA++IL QLCI++ K+CRLVLQEGAVPPLV LSQ+GT RAKEKAQQLL HFR+QREG
Sbjct: 16 MDTTSVRCVVNSISRFVHLVSCQTIKTVPTQKSCRNMASLLKLLKPVLDNVVDDKIPSDEDLYKECEELDTAVNEAREFVESWSSKMSKICSVLKSEELVMKMQCSSLDICRIVCQLLQSSPSSSCFTGVQHCMQELQCLKLERVSEFIEEALKSQSEGRVLPSEQLTRIIESLGLTAYQELLKESIALEKERMMAQVNKAKGDIDQINSIIELMLHIRDCMVKVENFRVMNGVYVPSYFRCPLSLELMLDPVIVASGQTYDRASIQKWLDNGLYICPKTRQMLSHTNLIPNYTVKALIASWCEQNHIKFSNILERNNAITPVISQSENAPCQDLVHTESFRCYSHSNDSASRSSLEVGNEFQKLKSKPN------GCRSRETENFDHSSHEQSYVHSRTESASSAVSSIDFLPAASTDVSRISGKHENASEVSGEIISECAASSPLYKNSELSPNLSEKLFNCSKTMAEVASKGNSNYPRTFSLPSSKSGCDDVTTTSHVEKLVEDLKSQSNAVQTSATAELRFLAKHNTENRVIIGCSGAIASLLSLLYSEIKLTQEHAVTALLNLSINENVKAKIAEAGAIAPLIHVLRTGSSGAQENAAAALFSLSVLDEYRIKIGRSSAVKALVDLLHMGTLRGKKDAATALFNLSIFHENKARIIQAGAVKYLVELMD--TEMVDKAVALLANLSTIAEGCKAIVRAGGMPLLLEVIETGSNRGKENASSILFQLCINNTKFCRLVLQEGAVPPLVALSQTGTPRAKEKAQQLLSHFRSQREG 786
BLAST of XM_017381960.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7G9R7 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 894.419 bits (2310), Expect = 0.000e+0
Identity = 485/823 (58.93%), Postives = 608/823 (73.88%), Query Frame = 0
Match: A0A7J7G9R7 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 894.419 bits (2310), Expect = 0.000e+0
Identity = 485/823 (58.93%), Postives = 608/823 (73.88%), Query Frame = 0
Query: 1 MDTKSVSCLINTISRFLHLLSSFEMKNMPAQNGYRNIASSLKILKLILDNVVESKVSSDEILCKECEILDVAVNEAREFIENWSPQMSKFCSVLGGEPLLLNIQGSSVRISHILCRLLESSPSSSSLSEVQ----------------------------------HCKQEFQCAELKKISEPIEDALKRQQRGLAPDSDNLSIIIESLSLTADLELLKESIALEKERMKAVTRKSQGDINLISQLVNLISDIRNCLVKYEIFKSINGIAVPLYFRCPLSLRLMLDPVIVATGQTYERTSIQTWLDHGLTICPITRQMLSHTNLIPNYTVKALIANWCEENKINLAECT-RVVAKTP---KMEALYLQDAIRDDRHHSRDSSNSS-SRSSLEV-NSFEKPRVNGNPGFSEKNS---ISNDSNKFDHSSPEQSCHHSRSGSASSQITSAGYVPTISSDGSRTSSKNKDERDLSGEMTSECQSSSSSKRNVSPAPSLTGKQYHSSNVLVERSAGGD-RNYPRTLSMPL-DSGSNDLTTNSHVKKLIDDLRNPSSEVQTTATAELRYLAKHNLENRNIICNCGAIEPLISLLYSDVKQTQEHAVTALLNLSINGNVKTIIAEAGVIEPLIHVLETGNSGARENAAATVFSISVIEEYRIKIGRSGAVKALVGLLESGTLRGKKDAATALFNLSIYHENKARIVQAGAVKHLVKLIDPESEMVDKAVAVLANLSTVTEGGLAIAREGGIPSLVEIVETGSQRGKENAATILLQLCISSPKYCRLVLQEGAVPPLVLLSQSGTTRAKEKAQQLLCHFRNQREGGSGRGK 778
MDTKSV ++N+ISRF+HL+S +K MP Q Y+N+AS LK+LK +LD+VV+ + SDE+LCKECE LD+AVNEAREF+E+WS +MSK SVL EPL++ IQ SS+ I HILCRLL+S PS+S+ + VQ HC QE QC + ++ISE IE+ALK Q++G+ P S++L I+ESLSLT++ + L+ESIALEKERM A +G+I+ I+ ++ L+S IR+C+VK E F+++NG+ +P YFRCPLSL LM DPVIVA+GQTY+RTSI WLD+GL+ICP TRQ SH NLIPNYTVKALIANWC+E I + R P + E QD IR D SN S SRSSLEV N F+K + + + FSE+ S S ++ FDHSSPEQS HSRS SASS ++S Y P S+D SRTS K+++ +L GE+ SEC +S +N +P L+ K YH S + E ++ + NYPRTLS+ +S +DL T +HV+KL++ LR+ S+ QT+A AELR+LAKHN ENR I+ + GAI PL+SLLYS+VK TQEH+VTALLNLSIN N+K IAEAG IEPLIHVL TGN+GA+ENAAA +FS+SV+EEY++KIGRSGAVKALV LL +G+LRGKKDAATALFNLSI+HENKARIVQAGAVK+LV+L+DP +EMVDKAVA+LANLST+ EG AI R GGIP LVE++ETGSQRGKENAA+IL QLCI+SPK+CRLVLQEGAVPPLV LSQSGT RAKEKAQQLL HFRNQREG +G+GK
Sbjct: 82 MDTKSVRYVVNSISRFIHLVSCQTIKAMPTQKSYKNVASLLKLLKPVLDDVVDYTIPSDEVLCKECEELDIAVNEAREFMESWSLKMSKIYSVLQSEPLVMKIQSSSLEICHILCRLLQSFPSTSTFTGVQVCMKLDFEYLLYSHRFLSWLTVPSAQLNSGYLLQHCMQELQCLKFERISECIEEALKSQRKGMVPPSEHLIRIVESLSLTSNQDFLRESIALEKERMMAQVNGVKGEIDQIN-IIGLMSHIRDCMVKLESFQAMNGVPIPSYFRCPLSLELMSDPVIVASGQTYDRTSIHKWLDNGLSICPETRQKFSHANLIPNYTVKALIANWCKEYHIKFSNTPERTNTNVPLVSQSEDTSCQDLIRMDSFRCSSHSNDSISRSSLEVGNGFQKLKNDASFRFSEEESNGCRSRETENFDHSSPEQSYVHSRSESASSAVSSFDYPPAASTDVSRTSGKHENASELLGEIISECPTSFPLAKNSEFSPILSEKPYHRSKTMAEMASNRNGNNYPRTLSLSSSESVCDDLATTTHVEKLVEGLRSQSNAAQTSAAAELRFLAKHNTENRVIVGHSGAIAPLLSLLYSEVKLTQEHSVTALLNLSINENIKVKIAEAGAIEPLIHVLRTGNAGAKENAAAALFSLSVLEEYKMKIGRSGAVKALVDLLHTGSLRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPATEMVDKAVALLANLSTIAEGCTAIVRAGGIPFLVEVIETGSQRGKENAASILFQLCINSPKFCRLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGPTGKGK 903
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7B4N1 | E-Value: 0.000e+0, PID: 67.01 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A5J5BJS3 | E-Value: 0.000e+0, PID: 67.98 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A5B7B465 | E-Value: 0.000e+0, PID: 64.85 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A5B7B6C6 | E-Value: 0.000e+0, PID: 66.40 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A5J5C5R2 | E-Value: 0.000e+0, PID: 62.90 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| F6HZL0 | E-Value: 0.000e+0, PID: 60.91 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A7N2MJ10 | E-Value: 0.000e+0, PID: 62.39 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A2R6PP79 | E-Value: 0.000e+0, PID: 59.97 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A2R6QSE2 | E-Value: 0.000e+0, PID: 61.10 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A7J7G9R7 | E-Value: 0.000e+0, PID: 58.93 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |