XM_017382658.1

Resource Type: 
Polypeptide
Name: 
XM_017382658.1
Identifier: 
XM_017382658.1-protein
Sequence: 
MKVLEKSWCFCNGGGKSERMKASIFSSKGQALARIGIGGSLFGTGFLIHR
NLLLTTHVNLPSVASAESAEIWLQNGVQACLFPHRFFITSSILDLTIVGL
DIMDGDSNAQGQHPLYMKTCTKVDLDLGSVVYLLGYAENKELKVGECKVV
IATDNLIKLSTDEVIWNPGSVGFDGHGNLAFMVCDPMKLATPPNTKSNTT
SSASSSWKKDFRMQFGIPIPVICDWLNQHWEGSLDELTKPKLPLIRLKSA
GQKSEFSSASFTMRQVFKSAEIKSAEAEEDGTPSSSNIMSKPNCMPGTSL
SPIANIGKVEARVSNPNSSHLQGIPTPEIYESPRLNSIPFSKKASTQNQL
LSINFPPRITRPPVSYHNVRKLLPFSDENFVKQVPLQHAMQENHLVERVQ
SSIADADMASIGSTSEVQSSSFPVEAPEAQNGYNSSEGETTMYSAETAES
HNYPSPKQGNFKQVGRSQSCVNYNRWGTVQRNPIAQRTMGDKSRSFVQGR
KMYSQGATSQRSNDYYSPTVSSIMKKRNNLEQPSRPKQFAVHSSAKWTF
Sequence Length: 
549
Sequence Checksum: 
29017c8e7eda7ab0f675566ca513d1ad
View location in JBrowse: 
DCARv2_Chr3:49846407..49849179-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017382658.1, derives from mRNA, XM_017382658.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017382658.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017382658.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A041 ((Uncharacterized protein {ECO:0000313|EMBL:MPA50202.1}))

HSP 1 Score: 762.681 bits (1968), Expect = 0.000e+0
Identity = 384/557 (68.94%), Postives = 448/557 (80.43%), Query Frame = 0
 
Query:    1 MKVLEKSWCFCNGGGKSERMKASIFSSKGQALARIGIGGSLFGTGFLIHRNLLLTTHVNLPSVASAESAEIWLQNGVQACLFPHRFFITSSILDLTIVGLDIMDGDSNAQGQHPLYMKTCTKVDLDLGSVVYLLGYAENKELKVGECKVVIATDNLIKLSTDEVIWNPGSVGFDGHGNLAFMVCDPMKLATPPNTK-SNTTSSASSSWKKDFRMQFGIPIPVICDWLNQHWEGSLDELTKPKLPLIRLKSAGQKSEFSSASFTMRQVFKSAEIKSAEAEEDGTPSSSNIMSKPNCMPGTSLSPIANIGKVEARVSNPNS-SHLQGIPTPEIYESPRLNSIPFSKKASTQNQLLSINFPPRITRPPVSYHNVRKLLPFSDENFVKQVPLQHAM-QENHLVERVQSS-IADADMASIGST----SEVQSSSFPVEAPEAQNGYNSSEGETTMYSAETAESHNYPSPKQGNFKQVGRSQSCVNYNRWGTVQRNPIAQRTMGDKSRSFVQGRKMYSQGATSQRSNDYYSPTVSSIMKKRNNLEQPSRPKQFAVHSSAKWTF 549
            M VL +SWCFCNGGGK ERMKA+IFS KG A+ARI  G +  G GFLIHRNLLLTTHVNLPSVA AE+ EI LQNGV A LFPHRFFITSS+LDLTIVGLD MDGDSN QGQ P Y+KTC+K +LDLGS++YLLGY E +EL VGE KVVIATDNLIKLSTD V W+PGS GFD  GNLAFMVCDPMKLAT PNTK S+T+SS+SSSWKKD  MQFGIPIP+ICDWLNQHWEG+LDEL KPKLPLIRL SAGQKSE S ASFTMR+VF     KS E E DGTPSSSN +SKP   PG S S +AN  + E R+++P++ +H+QGIPTPEIYESP+L S+P  K  +TQ QLL INFPPR+ +  V     ++L+P+SDEN VK++PLQH + +E    +R Q+  +ADA++AS GS     SEVQSSS P++ PE  NGY SSEGETTMYSAETAES NYPSP++G F+QVGRSQSCVNYNRWG  QRNP+A+R + +K RS +QG+K+YSQGATSQRSNDY+SPTVS IMKKRN+ E P+RP+Q A HSS +W F
Sbjct:    1 MGVLGESWCFCNGGGKYERMKAAIFSGKGPAMARIAGGATESGIGFLIHRNLLLTTHVNLPSVAVAEATEIRLQNGVAASLFPHRFFITSSVLDLTIVGLDAMDGDSNVQGQQPHYLKTCSKPNLDLGSIIYLLGYTEKRELTVGEGKVVIATDNLIKLSTDGVTWSPGSAGFDMQGNLAFMVCDPMKLATSPNTKSSSTSSSSSSSWKKDLPMQFGIPIPIICDWLNQHWEGNLDELNKPKLPLIRLMSAGQKSEHSCASFTMRRVF-----KSTEPENDGTPSSSNAISKPTDQPGPSSSAVANTFEDETRITDPHAGAHVQGIPTPEIYESPKLTSVPIRKNENTQLQLLDINFPPRVAKTTVLPQPSKRLVPYSDENCVKELPLQHPVREEEQFSDRGQTGPMADAEIASTGSVNGVHSEVQSSSSPIQVPEVHNGY-SSEGETTMYSAETAESRNYPSPREGKFQQVGRSQSCVNYNRWGIAQRNPVARRALLEKQRSSIQGKKIYSQGATSQRSNDYFSPTVSFIMKKRNSSEPPNRPRQSAAHSSPRWMF 551
[Close]
BLAST of XM_017382658.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A5B1 ((Uncharacterized protein {ECO:0000313|EMBL:MPA50203.1}))

HSP 1 Score: 758.059 bits (1956), Expect = 0.000e+0
Identity = 384/557 (68.94%), Postives = 448/557 (80.43%), Query Frame = 0
 
Query:    1 MKVLEKSWCFCNGGGKSERMKASIFSSKGQALARIGIGGSLFGTGFLIHRNLLLTTHVNLPSVASAESAEIWLQNGVQACLFPHRFFITSSILDLTIVGLDIMDGDSNAQGQHPLYMKTCTKVDLDLGSVVYLLGYAENKELKVGECKVVIATDNLIKLSTDEVIWNPGSVGFDGHGNLAFMVCDPMKLATPPNTK-SNTTSSASSSWKKDFRMQFGIPIPVICDWLNQHWEGSLDELTKPKLPLIRLKSAGQKSEFSSASFTMRQVFKSAEIKSAEAEEDGTPSSSNIMSKPNCMPGTSLSPIANIGKVEARVSNPNS-SHLQGIPTPEIYESPRLNSIPFSKKASTQNQLLSINFPPRITRPPVSYHNVRKLLPFSDENFVKQVPLQHAM-QENHLVERVQSS-IADADMASIGST----SEVQSSSFPVEAPEAQNGYNSSEGETTMYSAETAESHNYPSPKQGNFKQVGRSQSCVNYNRWGTVQRNPIAQRTMGDKSRSFVQGRKMYSQGATSQRSNDYYSPTVSSIMKKRNNLEQPSRPKQFAVHSSAKWTF 549
            M VL +SWCFCNGGGKSER KA+IFS K  A+ARI   G++ GTGFLIHRNLLLTTHVNLPSVA+AE+AEI LQNGV A LFPHRFFITSS+LDLTIVGLD MDGDSN QGQ P Y+KTC+K +LDLGS+VYLLGY E KEL VGE KVVIATDNLIKLSTD V W+PGS GFD  GNLAFMVCDPMKLAT PNTK S+T+SS+SSSWKKD  MQFGIPIP+IC+WLNQHWEG+LDEL KPKLPLIRL S  QKSE S ASFTMR+VF     KS E E DGTPSSSN +SKP   PG S S +AN  + E R+++P++ +H+QGIPTPEIYESP+L S+P  K  +TQ QLL INFPPR+ +  V     ++L+P+SDEN VK++PLQH + +E     R Q+  +ADA++AS GS     SEVQSSS P++ PE  NGY SSEGETTMYSAETAES NYPSP++G F+QVGRSQSCVNYNRWG  QRNP+A+R + +K RS +QG+K+YSQGATSQRSNDY+SPTVS IMKKRN+ E P+RP+Q A HSS +W F
Sbjct:    1 MGVLGESWCFCNGGGKSERTKAAIFSGKSPAMARISGRGTVSGTGFLIHRNLLLTTHVNLPSVAAAEAAEIRLQNGVPASLFPHRFFITSSVLDLTIVGLDAMDGDSNVQGQQPHYLKTCSKPNLDLGSIVYLLGYTEKKELTVGEGKVVIATDNLIKLSTDGVTWSPGSAGFDVQGNLAFMVCDPMKLATSPNTKSSSTSSSSSSSWKKDLPMQFGIPIPIICNWLNQHWEGNLDELNKPKLPLIRLMSGSQKSEHSCASFTMRRVF-----KSIEPENDGTPSSSNAISKPTDQPGPSSSAVANTFEDETRITDPHAGAHVQGIPTPEIYESPKLTSVPIRKNENTQLQLLDINFPPRVAKTTVLPQPSKRLVPYSDENCVKELPLQHPVREEEQFSNRGQTGPMADAEIASTGSVNGVHSEVQSSSSPIQVPEVHNGY-SSEGETTMYSAETAESRNYPSPREGKFQQVGRSQSCVNYNRWGIAQRNPVARRALLEKQRSSIQGKKIYSQGATSQRSNDYFSPTVSFIMKKRNSSEPPNRPRQSAAHSSPRWMF 551
[Close]
BLAST of XM_017382658.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A3E4 ((Uncharacterized protein {ECO:0000313|EMBL:MPA50201.1}))

HSP 1 Score: 749.199 bits (1933), Expect = 0.000e+0
Identity = 382/556 (68.71%), Postives = 442/556 (79.50%), Query Frame = 0
 
Query:    1 MKVLEKSWCFCNGGGKSERMKASIFSSKGQALARIGIGGSLFGTGFLIHRNLLLTTHVNLPSVASAESAEIWLQNGVQACLFPHRFFITSSILDLTIVGLDIMDGDSNAQGQHPLYMKTCTKVDLDLGSVVYLLGYAENKELKVGECKVVIATDNLIKLSTDEVIWNPGSVGFDGHGNLAFMVCDPMKLATPPNTK-SNTTSSASSSWKKDFRMQFGIPIPVICDWLNQHWEGSLDELTKPKLPLIRLKSAGQKSEFSSASFTMRQVFKSAEIKSAEAEEDGTPSSSNIMSKPNCMPGTSLSPIANIGKVEARVSNP-NSSHLQGIPTPEIYESPRLNSIPFSKKASTQNQLLSINFPPRITRPPVSYHNVRKLLPFSDENFVKQVPLQHAMQENHLVERVQSS-IADADMASIGST----SEVQSSSFPVEAPEAQNGYNSSEGETTMYSAETAESHNYPSPKQGNFKQVGRSQSCVNYNRWGTVQRNPIAQRTMGDKSRSFVQGRKMYSQGATSQRSNDYYSPTVSSIMKKRNNLEQPSRPKQFAVHSSAKWTF 549
            M VL +SWCFCNGGGK ERMKA+IFS KG A+ARI  G +  GTGFLIHRNLLLTTHVNLPSVA AE+ EI LQNGV A LFPHRFFITSS+LDLTIVGLD MDGDSN QGQ P Y+KTC+K +LDLGS++YLLGY E +EL VGE KVVIATDNLIKLSTD V W+PGS GFD  GNLAFMVCDPMKLAT PNTK S+T+SS+SSSWKKD  MQFG+PIP+ICDWLNQHWEG+LDEL KPKLPLIRL SAGQKSE S ASFTMR+VF     KS E E DGTPSSSN + KP   PG S S + N  + E  +++P  ++H QGIPTP+IYESP+L S+P  KK +TQ QLL INFPPRI +  +     ++L P+SD+N VK++PLQH  +     +R Q+  IADA+++S GS     SEVQSSS  +E  E QNG  SSEGETTMYSAETAES NYPSP++G F+QVGRSQSCVNYNRW  VQRNP+A+R M +K RSF+QGRK+YSQGA SQRSNDY+SPTVSSIMKKRN+ EQP+RP+Q A HSS +W F
Sbjct:    1 MGVLGESWCFCNGGGKYERMKAAIFSGKGPAMARIAGGATESGTGFLIHRNLLLTTHVNLPSVAVAEATEIRLQNGVAASLFPHRFFITSSVLDLTIVGLDAMDGDSNVQGQQPHYLKTCSKPNLDLGSIIYLLGYTEKRELTVGEGKVVIATDNLIKLSTDGVTWSPGSAGFDMQGNLAFMVCDPMKLATSPNTKSSSTSSSSSSSWKKDLPMQFGVPIPIICDWLNQHWEGNLDELNKPKLPLIRLMSAGQKSEHSCASFTMRRVF-----KSTEPENDGTPSSSNAIPKPRDQPGPSCSAVTNTFEDETLITDPCAAAHEQGIPTPDIYESPKLTSVPIRKKENTQIQLLDINFPPRIAKSTIWPQPAKRLAPYSDDNCVKELPLQHPPR-GQFSDRGQTGHIADAEISSTGSVNGAQSEVQSSSSLIEVSEVQNGC-SSEGETTMYSAETAESRNYPSPREGKFQQVGRSQSCVNYNRWEAVQRNPVARREMLEKHRSFIQGRKIYSQGAASQRSNDYFSPTVSSIMKKRNSSEQPNRPRQSAAHSSPRWMF 549
[Close]
BLAST of XM_017382658.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C6Y5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8550604.1}))

HSP 1 Score: 728.013 bits (1878), Expect = 0.000e+0
Identity = 377/557 (67.68%), Postives = 437/557 (78.46%), Query Frame = 0
 
Query:    1 MKVLEKSWCFCNGGGKSERMKASIFSSKGQALARIGIGGSLFGTGFLIHRNLLLTTHVNLPSVASAESAEIWLQNGVQACLFPHRFFITSSILDLTIVGLDIMDGDSNAQGQHPLYMKTCTKVDLDLGSVVYLLGYAENKELKVGECKVVIATDNLIKLSTDEVIWNPGSVGFDGHGNLAFMVCDPMKLATPPNTK-SNTTSSASSSWKKDFRMQFGIPIPVICDWLNQHWEGSLDELTKPKLPLIRLKSAGQKSEFSSASFTMRQVFKSAEIKSAEAEEDGTPSSSNIMSKPNCMPGTSLSPIANIGKVEARVSNPN-SSHLQGIPTPEIYESPRLNSIPFSKKASTQNQLLSINFPPRITRPPVSYHNVRKLLPFSDENFVKQVPLQHAMQENHLV--ERVQSSIADADMASI----GSTSEVQSSSFPVEAPEAQNGYNSSEGETTMYSAETAESHNYPSPKQGNFKQVGRSQSCVNYNRWGTVQRNPIAQRTMGDKSRSFVQGRKMYSQGATSQRSNDYYSPTVSSIMKKRNNLEQPSRPKQFAVHSSAKWTF 549
            M VL +SWCFCNGGGK+ERMKA+IFS K  A+ARI  GG++ GTGFLIHRNLLLTTHVNLPS A+AE+AEI LQNG  A LFPHRFFITSS+LDLTIVGLD+MDGDSN QGQ P Y+KTC+K +LDLGS++YLLGY E KEL VGE KVVIATDNLIKLSTD V W+PGS GFD  GNLAFMVCDPMKLAT PNTK S+T+SS+SSSWKKD  MQFGIPIP+IC+WLNQHWEGSLDEL KPKLPLIRL SA QKSE S ASFTMRQVF     KS E E DGT SSSN +SKP   PG   S +AN  + E R+ +P+ ++H+QGIPT EIYESP+L S+   K  +TQ QLL INFPP + +        ++L P+SDEN VK++P+QH ++E       R   S+ DA++AS     G  SEVQSSS P+   E  +GY SSEGETTMYSAETAES NYPSP++G F+QVGRSQSCVNYNRWG  QRNP+AQR + +K RS +QGRKMYSQGATSQRSNDY+SPTVS IMKKRN+ E P+RP+Q AVH S +W F
Sbjct:    1 MGVLGESWCFCNGGGKTERMKATIFSGKSPAMARIVSGGTVSGTGFLIHRNLLLTTHVNLPSAATAEAAEIRLQNGAAAILFPHRFFITSSVLDLTIVGLDVMDGDSNVQGQQPHYLKTCSKPNLDLGSIIYLLGYTEKKELTVGEGKVVIATDNLIKLSTDGVTWSPGSAGFDVQGNLAFMVCDPMKLATSPNTKSSSTSSSSSSSWKKDLPMQFGIPIPIICNWLNQHWEGSLDELNKPKLPLIRLMSATQKSEHSCASFTMRQVF-----KSVEPENDGTLSSSNTISKPTDQPGPISSAVANTFEGETRIRDPHAAAHVQGIPTTEIYESPKLTSVAIQKNKNTQIQLLDINFPPSVAKTRGLPQPSKRLAPYSDENCVKELPVQHPVREEEQFSYRRQAGSMEDAEIASTSSVNGVQSEVQSSSSPINVSEVHSGY-SSEGETTMYSAETAESRNYPSPREGKFQQVGRSQSCVNYNRWGAAQRNPVAQRALLEKQRSSIQGRKMYSQGATSQRSNDYFSPTVSFIMKKRNSSEPPNRPRQSAVHLSPRWMF 551
[Close]
BLAST of XM_017382658.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: W9RYN0 ((Uncharacterized protein {ECO:0000313|EMBL:EXB99108.1}))

HSP 1 Score: 722.235 bits (1863), Expect = 0.000e+0
Identity = 381/563 (67.67%), Postives = 441/563 (78.33%), Query Frame = 0
 
Query:    1 MKVLEKSWCFCNGGGKSERMKASIFSSKGQALARI-GIGGSLFGTGFLIHRNLLLTTHVNLPSVASAESAEIWLQNGVQACLFPHRFFITSSILDLTIVGLDIMDGDSNAQGQHPLYMKTCTKVDLDLGSVVYLLGYAENKELKVGECKVVIATDNLIKLSTDEVIWNPGSVGFDGHGNLAFMVCDPMKLA-TPPNTKSNTTSSASSSWKKDFRMQFGIPIPVICDWLNQHWEGSLDELTKPKLPLIRLKSAGQKSEFSSASFTMRQVFKSAEIKSAEAEEDGTPSSSNIMSKPNCMPGTSLSPIA-NIGKVEARVSNPNSSHLQGIPTPEIYESPRLNSIPFSKKASTQNQLLSINFPPRITRPPVSYHNVRKLLPFSDENFV----KQVPLQHAMQENHLVER-VQSSIADADMASIGST----SEVQSSSFPVEAPEAQNGYN--SSEGETTMYSAETAESHNYPSPKQGNFKQVGRSQSCVNYNRWGTVQRNPIAQRTMGDKSRSFVQGRKMYSQGATSQRSNDYYSPTVSSIMKKRNNLEQPSRPKQFAVHSSAKWTF 549
            M  L +SWCFC G  KSERMKA+IFS K  A+A   G    +FGTGFLIHRNLLL+THVNLPSV++AESAEI LQNGV A LFPHRFFITSS+LDLTIVGLD MDGDSNAQGQHP Y+KTC+K  LDLGSVVYLLG+ E KEL VGE KVVIATDNLIKLSTD V+W+PGS GFD  GNLAFM+CDPMKLA +P N  S+T+SS+SSSWKKDF MQFGIPIP+ICDWLNQHWEGSLD+L KPKLP+IRL S GQKSE S ASFT+R+VF     KS EA++DGTPSSSN +SK    PG S SP A N  + E R ++P++ H+QGIPTPEIYESP+LN++P  KK S+  QLL INFPP++ RP       + LLP S ENF+    ++ PL+    +N   ER +    A+A+++S GS     SEVQSSS PVE  E QNGYN  SSEGE TMYSAETAES NY SP +G F+QVGRSQSCV+YNRWGTVQRNP+A+RT+ +K RSFV GRKMYSQGATSQRSND+YSPTVSSIMK RNNLEQ +RP+Q  VHSS +W F
Sbjct:    1 MGGLRESWCFCKGVSKSERMKAAIFSGKAPAMATTSGAANEIFGTGFLIHRNLLLSTHVNLPSVSAAESAEIRLQNGVAATLFPHRFFITSSVLDLTIVGLDSMDGDSNAQGQHPHYLKTCSKPTLDLGSVVYLLGHTEKKELTVGEGKVVIATDNLIKLSTDGVMWSPGSAGFDVQGNLAFMICDPMKLASSPTNKSSSTSSSSSSSWKKDFPMQFGIPIPIICDWLNQHWEGSLDDLNKPKLPIIRLMSTGQKSEHSCASFTLRRVF-----KSTEADQDGTPSSSNAISKARDQPGPSCSPPAENTVEEETRTTDPHAMHIQGIPTPEIYESPKLNAVPIQKKQSSPVQLLDINFPPKVVRPVSPKRPAKLLLPSSGENFIREPSRERPLREGEDQNK--ERGLTGPDANAEVSSTGSVSGAQSEVQSSSSPVEILEMQNGYNGYSSEGE-TMYSAETAESRNYTSPGEGKFQQVGRSQSCVSYNRWGTVQRNPVARRTLVEKQRSFVHGRKMYSQGATSQRSNDFYSPTVSSIMKNRNNLEQKNRPQQSTVHSSPRWMF 555
[Close]
BLAST of XM_017382658.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QJR9 ((ATP-dependent RNA helicase {ECO:0000313|EMBL:PSS09648.1}))

HSP 1 Score: 721.465 bits (1861), Expect = 0.000e+0
Identity = 378/559 (67.62%), Postives = 445/559 (79.61%), Query Frame = 0
 
Query:    1 MKVLEKSWCFCNGGGKSERMKASIFSSKGQALARIGIGGSLFGTGFLIHRNLLLTTHVNLPSVASAESAEIWLQNGVQACLFPHRFFITSSILDLTIVGLDIMDGDSNAQGQHPLYMKTCTKVDLDLGSVVYLLGYAENKELKVGECKVVIATDNLIKLSTDEVIWNPGSVGFDGHGNLAFMVCDPMK-LATPPNTKSNTTSSASSSWKKDFRMQFGIPIPVICDWLNQHWEGSLDELTKPKLPLIRLKSAGQKSEFSSASFTMRQVFKSAEIKSAEAEEDGTPSSSNIMSKPNCMPGTSLSPIANIGKVEARVSNPNS-SHLQGIPTPEIYESPRLNSIPFSKKASTQNQLLSINFPPRITRPPVSYHNVRKLLPFSDENFVKQVPLQHA-MQENHLVERVQS---SIADADMASIGST----SEVQSSSFPVEAPEAQNGYNSSEGETTMYSAETAESHNYPSPKQGNFKQVGRSQSCVNYNRWGTVQRNPIAQRTMGDKSRSFVQGRKMYSQGATSQRSNDYYSPTVSSIMKKRNNLEQPSRPKQFAVHSSAKWTF 549
            M+VL +SWCFCNGGGKSER KA+IFS KG A+ARI  GG + GTGFLIHRNL+LTTHVNLPSVA+AE AEI LQNGV A LFPHRFFITS++LDLTIVG+D MDGDSNAQ Q P Y+KTC K +L+LG+VVYLLGY E  EL VGE KVVIATDNLIKLSTD V W+PGS GFD  GNLAFMVCDPMK LAT PNTKS+T+SS+SSSWKKDF MQFGIPIP+ICDWLNQHWEG+LD+L KPKLPLIRL SAGQK + S ASFTM++VF     KS E E D T SSSN+MS+ N  PG S S +A+    E   ++P++ +H+QGIPTPEIYESP+L S+   KK +TQ QLL INFPP++ + PV     +   P+SDEN+VK++PLQ   ++E     R QS   ++ADAD+ASIGS     SEVQ SS P+E  E QNGY SSEGETTMYSAETAES NYPSP++G F+QVGRSQSCVNY+RWG VQRNP+AQ+ + +  RSF+QGRK+YS GATSQRSNDY+SPTV+SIMKKRN  EQ +RP++ AVHSS +W F
Sbjct:    1 MRVLGESWCFCNGGGKSERTKAAIFSGKGSAMARISGGGGMSGTGFLIHRNLMLTTHVNLPSVAAAEGAEILLQNGVAASLFPHRFFITSAVLDLTIVGVDSMDGDSNAQEQQPHYLKTCFKPNLELGTVVYLLGYTERNELTVGEGKVVIATDNLIKLSTDGVTWSPGSAGFDVQGNLAFMVCDPMKLLATSPNTKSSTSSSSSSSWKKDFPMQFGIPIPIICDWLNQHWEGNLDDLNKPKLPLIRLISAGQKIDHSCASFTMKRVF-----KSIEPENDATASSSNMMSQTNNKPGPSCSAVAHTCDGETLTTDPHAPTHVQGIPTPEIYESPKLTSVSLKKKENTQIQLLDINFPPKVAKFPVFSQPTKTPAPYSDENYVKELPLQQPLLREEGCSHRGQSGPLALADADIASIGSVNGAQSEVQFSSSPIEISEMQNGY-SSEGETTMYSAETAESRNYPSPREGKFQQVGRSQSCVNYSRWGAVQRNPMAQKAVLENQRSFMQGRKIYSHGATSQRSNDYFSPTVASIMKKRN--EQQNRPRKNAVHSSPRWMF 551
[Close]
BLAST of XM_017382658.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3JM18 ((Uncharacterized protein {ECO:0000313|EMBL:OMO95902.1}))

HSP 1 Score: 715.687 bits (1846), Expect = 0.000e+0
Identity = 373/562 (66.37%), Postives = 433/562 (77.05%), Query Frame = 0
 
Query:    1 MKVLEKSWCFCNGGGKSERMKASIFSSKGQALARIGIGGS--LFGTGFLIHRNLLLTTHVNLPSVASAESAEIWLQNGVQACLFPHRFFITSSILDLTIVGLDIMDGDSNAQGQHPLYMKTCTKVDLDLGSVVYLLGYAENKELKVGECKVVIATDNLIKLSTDEVIWNPGSVGFDGHGNLAFMVCDPMKLATPPNTK-SNTTSSASSSWKKDFRMQFGIPIPVICDWLNQHWEGSLDELTKPKLPLIRLKSAGQKSEFSSASFTMRQVFKSAEIKSAEAEEDGTPSSSNIMSKPNCMPGTSLSPIANIGKVEARVSNPNSSHLQGIPTPEIYESPRLNSIPFSKKASTQNQLLSINFPPRITRPPVSYHNVRKLLPFSDENFVKQVPLQHAMQENHLVERVQSSIADADMASIGST----SEVQSSSFPVEAPEAQNGYNSSEGETTMYSAETAESHNYPSPKQGNFKQVGRSQSCVNYNRWGTVQRNPIAQRTMGDKSRSFVQGRKMYSQGATSQRSNDYYSPTVSSIMKKRNNLEQPSRPKQFA------VHSSAKWTF 549
            M VL +SWCFC G  K+ERMK +IFSSK  A+ARI    S  + GTGFLIHRNLLLTTHVNLPSVA+AES+EI LQNG  A L PHRFFITSS+LDLTIVGLD MDG+SN QGQ P Y+KTC+K +LDLGSVVYLLGY E KEL +GE KVVIATDNLIKLSTD +IWNPGS GFD  GNLAFM+CDPMKLAT PNTK S+T+SS+SSSWKKD  MQFGIPIP+ICDWLNQHWEGSL+E+TKPKLP+IRL S+GQKSE SSASFTMRQVF     KS EAE D T SSSNI+SK    PG S S   N    E    +P  +H QGIPTPEIYESP+L ++P  KK ++Q QLL INFPPRI +  V+    ++L   SDEN +K++P +  ++E + ++  +   ADAD+AS GS     SEVQSSS PVE  E  NGY SSEGE TMYSAETAES NY SP++G F+QVGRSQSCV Y RWG VQRNP+A+R + +K RSF+ G+K YSQGATSQRSNDY+SPTVSSIMKKRN+ EQPS+P+Q A      VHSS +W F
Sbjct:    1 MGVLRESWCFCKGVSKTERMKGTIFSSKASAMARISGAASSGISGTGFLIHRNLLLTTHVNLPSVAAAESSEIRLQNGFTATLVPHRFFITSSVLDLTIVGLDAMDGESNTQGQQPHYLKTCSKPNLDLGSVVYLLGYTEKKELTIGEGKVVIATDNLIKLSTDGIIWNPGSAGFDAQGNLAFMICDPMKLATSPNTKSSSTSSSSSSSWKKDTPMQFGIPIPIICDWLNQHWEGSLEEVTKPKLPIIRLMSSGQKSEHSSASFTMRQVF-----KSTEAENDRTSSSSNIISKTRDQPGPSSSAAVNTVDEETPRCDPQGAHTQGIPTPEIYESPKLTAVPLRKKETSQIQLLDINFPPRIVKTAVALQPAKQLPLSSDENGLKELPPESPLREENQIQN-RGPNADADVASTGSVNGAQSEVQSSSSPVELSEMHNGY-SSEGE-TMYSAETAESRNYTSPREGKFQQVGRSQSCVGYTRWGAVQRNPVARRALLEKQRSFIHGKKTYSQGATSQRSNDYFSPTVSSIMKKRNS-EQPSKPRQSAVNAVNTVHSSPRWMF 553
[Close]
BLAST of XM_017382658.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6P6S1 ((Flocculation protein {ECO:0000313|EMBL:PSR86342.1}))

HSP 1 Score: 713.375 bits (1840), Expect = 0.000e+0
Identity = 382/559 (68.34%), Postives = 445/559 (79.61%), Query Frame = 0
 
Query:    1 MKVLEKSWCFCNGGGKSERMKASIFSSKGQALARIGIGGSLFGTGFLIHRNLLLTTHVNLPSVASAESAEIWLQNGVQACLFPHRFFITSSILDLTIVGLDIMDGDSNAQGQHPLYMKTCTKVDLDLGSVVYLLGYAENKELKVGECKVVIATDNLIKLSTDEVIWNPGSVGFDGHGNLAFMVCDPMKLATPPNTK-SNTTSSASSSWKKDFRMQFGIPIPVICDWLNQHWEGSLDELTKPKLPLIRLKSAGQKSEFSSASFTMRQVFKSAEIKSAEAEEDGTPSSSNIMSKPNCMPGTSLSPIANIGKVEARVSNPNS-SHLQGIPTPEIYESPRLNSIPFSKKASTQNQLLSINFPPRITRPPVSYHNVRKLLPFSDENFVKQVPLQHA-MQENHLVERVQS---SIADADMASIGST----SEVQSSSFPVEAPEAQNGYNSSEGETTMYSAETAESHNYPSPKQGNFKQVGRSQSCVNYNRWGTVQRNPIAQRTMGDKSRSFVQGRKMYSQGATSQRSNDYYSPTVSSIMKKRNNLEQPSRPKQFAVHSSAKWTF 549
            M +L +SWCFCNGGGKSER KA+IFS KG A+ARI  GG + GTGFLIHRNL+LTTHVNLPSV +AE+AEI LQNGV A LFPHRFFITSS+LDLTIVG+D MDGDSNAQGQ P Y+KTC K +L+LG+VVYLLGY E  EL VGE KVVIATDNLIKLSTD V W+PGS GFD  GNLAFMVCDPMKLAT PNTK S+T+SS+SSSWKKD  MQFGIPIP+ICDWLNQHWEG+LD+L KPKLPLIRL SAGQKS+ S ASFTMR+VF     KS E E DGTPSSSN+MSK N  PG S S +A+    E   ++P++ +H+QGIPTPEIYESP+L S+P  KK +TQ QLL INF P++ +PPV   + +   P+SDEN+VK++PLQ   ++E     R QS   ++ D D+AS GS     SEVQSSS P+E  E QNGY SSEGETTMYSAETAES NYPSP++G F+QVGRSQSCVNYNRWG VQRNP+A+    +  RSF+QGRK+YSQGATSQRSNDY+SPTV+SIMKKRN  EQ +RP+Q  VHSS +W F
Sbjct:    1 MGILGESWCFCNGGGKSERTKAAIFSGKGPAMARISGGGGMSGTGFLIHRNLMLTTHVNLPSVVAAEAAEIRLQNGVAASLFPHRFFITSSVLDLTIVGVDAMDGDSNAQGQQPHYLKTCFKPNLELGTVVYLLGYTERNELTVGEGKVVIATDNLIKLSTDGVTWSPGSAGFDVQGNLAFMVCDPMKLATSPNTKSSSTSSSSSSSWKKDLPMQFGIPIPIICDWLNQHWEGNLDDLNKPKLPLIRLMSAGQKSDHSCASFTMRRVF-----KSIEPENDGTPSSSNMMSKTNDKPGPSCSAMAHTCDDETLTTDPHAPTHVQGIPTPEIYESPKLTSVPV-KKENTQIQLLDINFLPKVDKPPVFSQSTKTPAPYSDENYVKELPLQQPLLREEGCSHRGQSGPMALTDTDIASTGSVNGAQSEVQSSSSPIEISEMQNGY-SSEGETTMYSAETAESRNYPSPREGKFQQVGRSQSCVNYNRWGAVQRNPMARTAAVENQRSFMQGRKIYSQGATSQRSNDYFSPTVASIMKKRN--EQQNRPRQNGVHSSPRWMF 550
[Close]
BLAST of XM_017382658.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6UQR5 ((uncharacterized protein LOC113713604 {ECO:0000313|RefSeq:XP_027093165.1}))

HSP 1 Score: 712.99 bits (1839), Expect = 0.000e+0
Identity = 375/557 (67.32%), Postives = 431/557 (77.38%), Query Frame = 0
 
Query:    1 MKVLEKSWCFCNGGGKSERMKASIFSSKGQALARIGIGGSLFGTGFLIHRNLLLTTHVNLPSVASAESAEIWLQNGVQACLFPHRFFITSSILDLTIVGLDIMDGDSNAQGQHPLYMKTCTKVDLDLGSVVYLLGYAENKELKVGECKVVIATDNLIKLSTDEVIWNPGSVGFDGHGNLAFMVCDPMKLA-TPPNTKSNTTSSASSSWKKDFRMQFGIPIPVICDWLNQHWEGSLDELTKPKLPLIRLKSAGQKSEFSSASFTMRQVFKSAEIKSAEAEEDGTPSSSNIMSKPNCMPGTSLSPIANIGKVEARVSNPNS-SHLQGIPTPEIYESPRLNSIPFSKKASTQNQLLSINFPPRITRPPVSYHNVRKLLPFSDENFVKQVPLQHAMQENHLVERVQSS-IADADMASIGST----SEVQSSSFPVEAPEAQNGYNSSEGETTMYSAETAESHNYPSPKQGNFKQVGRSQSCVNYNRWGTVQRNPIAQRTMGDKSRSFVQGRKMYSQGATSQRSNDYYSPTVSSIMKKRNNLE-QPSRPKQFAVHSSAKWTF 549
            M VL +SWCFCNGGGKSERMKA+IFS KG  +ARIG  G    TGFLIHRNLLLTTHVNLPSV++AE+AEI L NGV ACLFPHRFFITSS+LDLTIVGLD MDG++N   QH  ++K C+  +LDLGSVVYLLG  E KEL VGE KVVI TDNLIKLSTD VIW+PGS GFD HGNLAFMVCDPMKLA +P    ++T+SS+SSSWKKD  MQFGIPIP+ICDWLNQHWEG+LDEL KPKLPL+RL S GQKSE S ASFTMRQVF     KS EAE +GTPSSSN+MSK     G S S + N  + EA  ++P + +H+QGIPTPEIYESP+L S P  K+ STQ QLL INFPPRI + P S    R + P SDEN VK+ P  H M E+   ++  S  IA+A++AS GS     SEVQS + PV+  E Q  Y SSEGETTMYSAETAES NYPSPK+G F QVGRSQSCVNYNRWG  Q+ P+ ++TM +K RSF+QGRK+YSQGA S RSN+YYSPTVSSIMKKRNNLE QP+RP+Q AVHSS +W F
Sbjct:    1 MGVLRESWCFCNGGGKSERMKAAIFSGKGPLMARIGAAG----TGFLIHRNLLLTTHVNLPSVSAAEAAEIRLHNGVAACLFPHRFFITSSVLDLTIVGLDAMDGETNVLVQHNHHLKPCSNPNLDLGSVVYLLGCTEEKELTVGEGKVVIPTDNLIKLSTDGVIWSPGSAGFDVHGNLAFMVCDPMKLATSPNTKSTSTSSSSSSSWKKDLPMQFGIPIPIICDWLNQHWEGNLDELNKPKLPLLRLMSTGQKSEHSCASFTMRQVF-----KSTEAENEGTPSSSNMMSK---HIGPSCSAVHNSSEDEALTADPPAPTHVQGIPTPEIYESPKLTSTPVRKRESTQIQLLDINFPPRIVKVPASLQPTRIVQPNSDENHVKEPPRLHLMDEDQFSDKGHSGIIAEAEVASTGSVNGVQSEVQSCASPVDGSEMQRDY-SSEGETTMYSAETAESRNYPSPKEGRFNQVGRSQSCVNYNRWGPAQKFPVGRKTMIEKQRSFMQGRKVYSQGAASHRSNEYYSPTVSSIMKKRNNLEQQPNRPRQNAVHSSPRWMF 544
[Close]
BLAST of XM_017382658.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J5VT74 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4291221.1}))

HSP 1 Score: 711.835 bits (1836), Expect = 0.000e+0
Identity = 377/557 (67.68%), Postives = 437/557 (78.46%), Query Frame = 0
 
Query:    1 MKVLEKSWCFCNGGGKSERMKASIFSSKGQALARI-GIGGSLFGTGFLIHRNLLLTTHVNLPSVASAESAEIWLQNGVQACLFPHRFFITSSILDLTIVGLDIMDGDSNAQGQHPLYMKTCTKVDLDLGSVVYLLGYAENKELKVGECKVVIATDNLIKLSTDEVIWNPGSVGFDGHGNLAFMVCDPMKLATPPNTKSNTTSSASSS-WKKDFRMQFGIPIPVICDWLNQHWEGSLDELTKPKLPLIRLKSAGQKSEFSSASFTMRQVFKSAEIKSAEAEEDGTPSSSNIMSKPNCMPGTSLSPIANIGKVEARVSNPNSSHLQGIPTPEIYESPRLNSIPFSKKASTQNQLLSINFPPRITRPPVSYHNVRKLLPFSDENFVKQVPLQHAMQENHLVE--RVQSSIADADMASIGST----SEVQSSSFPVEAPEAQNGYNSSEGETTMYSAETAESHNYPSPKQGNFKQVGRSQSCVNYNRWGTVQRNPIAQRTMGDKSRSFVQGRKMYSQGATSQRSNDYYSPTVSSIMKKRNNLEQPSRPKQFAVHSSAKWTF 549
            M  L +SWCFC G  KSE+MKA+IFS K  A+ARI G G  + GTGFLIHR+LLLTTHVNLPSVA+AES+EI LQNGV A L P RFFITSSILDLTIVGLD +DGDSNAQG H  ++KTC+K  LDLGSVVYLLGY E KEL VGE KVVIATDNLIKLSTD V+W+PGS GFD  GNLAFM+CDPMKLAT PNTKS++TSS+S+S WKKD  MQFGIPIP+ICDWLNQHWEGSLD+L KPKLPLIRL S+GQKSE S ASFT R+VFKS E     A+ DGT SSSN +SK    PG S S  AN  + EA  S+P+++H+QGIPTPEIYESP+L ++P  +K  +  QLL INFPPR+T+P V     +KL P SDENFVK  P +  ++E + ++  R  S  ADA++AS GS     SEVQSSSFP+E  + QNGY SSEGET MYSAETAES NY SP +G F+QVGRSQSCVNYNRWG  Q NP+A+R + +K RSF+ GRKM+SQGATSQRSNDYYSPTVSSIMKKRN+ +QP RP+Q AVHSS KW F
Sbjct:    1 MGGLRESWCFCKGVSKSEKMKAAIFSGKAPAMARILGPGNGISGTGFLIHRSLLLTTHVNLPSVAAAESSEIRLQNGVAATLVPQRFFITSSILDLTIVGLDAVDGDSNAQG-HLHHLKTCSKPTLDLGSVVYLLGYTEKKELTVGEGKVVIATDNLIKLSTDGVMWSPGSAGFDAQGNLAFMICDPMKLATSPNTKSSSTSSSSTSSWKKDLPMQFGIPIPIICDWLNQHWEGSLDDLNKPKLPLIRLMSSGQKSEHSCASFTQRRVFKSTE-----ADNDGTTSSSNTVSKTRDQPGPSCSAAANTVEEEALTSDPHAAHVQGIPTPEIYESPKLTAVPIRRKEGSPIQLLDINFPPRVTKPAVLPQPTKKLPPNSDENFVKAPPPRSPIREENQIKNRRPTSPDADAEIASTGSVNGAQSEVQSSSFPLEVSDMQNGY-SSEGET-MYSAETAESRNYTSPAEGKFQQVGRSQSCVNYNRWGAAQSNPVARRALLEKQRSFIHGRKMHSQGATSQRSNDYYSPTVSSIMKKRNSEQQPVRPRQSAVHSSPKWNF 549
Match NameStatsDescription
A0A5B7A041E-Value: 0.000e+0, PID: 68.94(Uncharacterized protein {ECO:0000313|EMBL:MPA5020... [more]
A0A5B7A5B1E-Value: 0.000e+0, PID: 68.94(Uncharacterized protein {ECO:0000313|EMBL:MPA5020... [more]
A0A5B7A3E4E-Value: 0.000e+0, PID: 68.71(Uncharacterized protein {ECO:0000313|EMBL:MPA5020... [more]
A0A5J5C6Y5E-Value: 0.000e+0, PID: 67.68(Uncharacterized protein {ECO:0000313|EMBL:KAA8550... [more]
W9RYN0E-Value: 0.000e+0, PID: 67.67(Uncharacterized protein {ECO:0000313|EMBL:EXB9910... [more]
A0A2R6QJR9E-Value: 0.000e+0, PID: 67.62(ATP-dependent RNA helicase {ECO:0000313|EMBL:PSS0... [more]
A0A1R3JM18E-Value: 0.000e+0, PID: 66.37(Uncharacterized protein {ECO:0000313|EMBL:OMO9590... [more]
A0A2R6P6S1E-Value: 0.000e+0, PID: 68.34(Flocculation protein {ECO:0000313|EMBL:PSR86342.1... [more]
A0A6P6UQR5E-Value: 0.000e+0, PID: 67.32(uncharacterized protein LOC113713604 {ECO:0000313... [more]
A0A6J5VT74E-Value: 0.000e+0, PID: 67.68(Uncharacterized protein {ECO:0000313|EMBL:CAB4291... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.