Resource Type:
Polypeptide
Name:
XM_017386781.1
Identifier:
XM_017386781.1-protein
Sequence:
MAAATEAGAAEVVAPPPAQTVGNAFVAQYYKILHHSPSLVHRFYQDISQL
GRPEEDGSTSITTTMTAINEKVLSLHYDDYKAEIKSVDAQESLSSGVHVL
VTGYMTGKDNIERNFTQSFFLAPQDRGGYFVLNDMFQYVDKVSIAESKTQ
AFSVEVEIPVTAEQEQVVTEAAPVEDDHITEQTNGVAEEANGEVHSPFEN
GKIVEATEEQEEEPVAEVVNAVPDDSQMVVEANVKTEEAPKKSYASIVKD
LKVNSLPFSSPPPASRKTPSKSQEKKVNHAPPTVSSAEVSGAAPESGKSQ
DGEAEGYSIYIKGLPYDATPALLEDEFKKFGAIKNGGIQVRSKQGFCFGF
VEFEEESAVHNAVKASPITLGGRPAVIEEKRSTNSRVTNRGRFPAGRGVG
FRNEAGFRNEGMRGRGNYGGGRGYNRAEFSGRSEFSNNRGNNRGGSSNRG
GGDGFQRTENSANGGRVTRGGGLSGSGAAKNLAPRVPASA
Sequence Length:
490
Sequence Checksum:
94da9ec827be20a5daaadbd27cb96609
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017386781.1, derives from mRNA, XM_017386781.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017386781.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017386781.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C5T9 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8550589.1}))
HSP 1 Score: 550.436 bits (1417), Expect = 0.000e+0
Identity = 294/482 (61.00%), Postives = 366/482 (75.93%), Query Frame = 0
Match: A0A5J5C5T9 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8550589.1}))
HSP 1 Score: 550.436 bits (1417), Expect = 0.000e+0
Identity = 294/482 (61.00%), Postives = 366/482 (75.93%), Query Frame = 0
Query: 15 PPPAQTVGNAFVAQYYKILHHSPSLVHRFYQDISQLGRPEEDGSTSITTTMTAINEKVLSLHYDDYKAEIKSVDAQESLSSGVHVLVTGYMTGKDNIERNFTQSFFLAPQDRGGYFVLNDMFQYVDKVSIAESKTQAFSVEVEIPVTAEQEQVVTEAAPVEDDHITEQTNGVAEEANG-EVHSPFENGKIVEATEEQEEEPVAEVVNAVPDDSQMVVEANVKTEEAPKKSYASIVKDLKVNSLPFSSPPPASRKTPSKSQEKKVNHAPPTVSSAEV---SGAAPESGKSQDGEAEGYSIYIKGLPYDATPALLEDEFKKFGAIKNGGIQVRS--KQGFCFGFVEFEEESAVHNAVKASPITLGGRPAVIEEKRSTNSRVTNRGRFPAGRGVGFRNEAGFRNEGMRGRGNYGGGRGYNRAEFSGRSEFSNNRGNNRGGSSNRGGGDGFQRTENSANGGRVTRGGGLSGSGAAKNLAPRVPASA 490
P AQ VGNAF+ QYY ILH SP LV+RFYQ IS+LGRPEE+G+ SITTTM AIN+K+LSL+Y ++KAEIKSVDAQES GVHVLVTGY+TGKDN+ RNF+Q+FFLAPQD+ GYFVLNDMF+YV+ V+ + Q + +VE P+ +EQ + +P++++HI EQ EEANG EV++P +NG++ E EE P+ EVV+ V DDSQMVVE+N K EE PKKSYASIV D+K N FS+P PA R++ K+QE +VN APP V AE S APE+G +Q+GEA+GYSIYIKGLP +A P LLEDEFK+FG IKNGGIQVRS +QGFCFGFVEFE SAV A++ASP+ +GGR A +EEKRSTNSRV NRGR P GRG + F+NEG+R GNYGG RGY+R +F+GR+EF NRG+NRGG SNR GGDG+QR + +NGG V R GG++ +G K +AP+VPA+A
Sbjct: 8 PVSAQVVGNAFIQQYYHILHQSPGLVYRFYQGISKLGRPEENGTMSITTTMQAINDKILSLNYGEFKAEIKSVDAQESFDGGVHVLVTGYLTGKDNVIRNFSQTFFLAPQDK-GYFVLNDMFRYVEDVN-HHAGNQDSANDVEAPLPSEQ-----DPSPLQENHIFEQAAVTEEEANGEEVYNPSDNGEVSE-----EEVPIPEVVDEVQDDSQMVVESNSKIEEVPKKSYASIVMDMKENH--FSAPAPAPRRSVPKNQE-QVNPAPPLVPVAETPVSSSDAPENGNNQEGEADGYSIYIKGLPLNAIPPLLEDEFKRFGPIKNGGIQVRSNRQQGFCFGFVEFEVASAVRQAIEASPVMIGGRQAYVEEKRSTNSRVNNRGRLPNGRG------SSFQNEGVRWHGNYGGARGYSRGDFNGRAEFG-NRGSNRGGFSNR-GGDGYQRAD--SNGGHVNRAGGMAANGTPKTMAPQVPATA 464
BLAST of XM_017386781.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z364 ((Putative G3BP-like protein isoform X2 {ECO:0000313|EMBL:MPA37523.1}) (3.6.4.12 {ECO:0000313|EMBL:MPA37523.1}) (3.6.4.13 {ECO:0000313|EMBL:MPA37523.1}))
HSP 1 Score: 516.924 bits (1330), Expect = 4.877e-179
Identity = 301/489 (61.55%), Postives = 367/489 (75.05%), Query Frame = 0
Match: A0A5B6Z364 ((Putative G3BP-like protein isoform X2 {ECO:0000313|EMBL:MPA37523.1}) (3.6.4.12 {ECO:0000313|EMBL:MPA37523.1}) (3.6.4.13 {ECO:0000313|EMBL:MPA37523.1}))
HSP 1 Score: 516.924 bits (1330), Expect = 4.877e-179
Identity = 301/489 (61.55%), Postives = 367/489 (75.05%), Query Frame = 0
Query: 9 AAEVVAPPPAQTVGNAFVAQYYKILHHSPSLVHRFYQDISQLGRPEEDGSTSITTTMTAINEKVLSLHYDDYKAEIKSVDAQESLSSGVHVLVTGYMTGKDNIERNFTQSFFLAPQDRGGYFVLNDMFQYVDKVSIAESKTQAFSVEVEIPVTAEQEQVVTEAAPVEDDHITEQTNGVAEEANG-EVHSPFENGKIVEATEEQEEEPVAEVVNAVPDDSQMVVEANVKTEEAPKKSYASIVKDLKVNSLPFSSPPPASRKTPSKSQEKKVNHAPPTVSSAEV---SGAAPESGKSQDGEAEGYSIYIKGLPYDATPALLEDEFKKFGAIKNGGIQVRS--KQGFCFGFVEFEEESAVHNAVKASPITLGGRPAVIEEKRSTNSRVTNRGRFPAGRGVGFRNEAGFRNEGMRGRGNYGGGRGYNRAEFSGRSEFSNNRGNNRGGSSNRGGGDGFQRTEN-SANGGRVTRGGGLSGSGAAKNLAPRVPASA 490
AA V P AQ VGNAFV QYY ILH SP LV+RFYQDIS+LGRPE++G+ SITTTM AINEK+LSL+Y +++AEIKSVDAQES GVHVLVTGY+TGKDN+ RNF Q+FFLAPQD+ GYFVLND+F+YV+ V+ + Q + EVE P+T EQ + +PV++ H++EQT +AEEANG EV++P +NG++ EE V + V DDSQMVVE+N K EE PKKSYASIV D+K N FSSP A R++ K QE +VN APP E S APE+G +Q+GEA+GYSIYIKGLP +ATP LLEDEFK+FG IK+GGIQVRS +QGFCFGFVEFE SAV A++ASPI +GGR A +EEKRSTNSRV NRGR P GRG + FRNEG+R RGNYGGGRGY+R +F+GR+EF NRG+NRGG SN GGDG+QR +N +NGGRV R GG++ +G AK +APRV A+A
Sbjct: 2 AATVQQPVSAQVVGNAFVQQYYHILHQSPGLVYRFYQDISKLGRPEDNGTMSITTTMQAINEKILSLNYGEFRAEIKSVDAQESFDGGVHVLVTGYLTGKDNVIRNFAQTFFLAPQDK-GYFVLNDIFRYVEDVNHHDG-NQGSANEVEAPLTPEQ-----DPSPVQESHVSEQTTVLAEEANGEEVYNPSDNGEVSVVEEEVPVPEVVDEVQ---DDSQMVVESNSKIEEVPKKSYASIVMDMKENH--FSSPASAPRRSVPKIQE-QVNPAPPPAPLVETPLSSSDAPENGNNQEGEADGYSIYIKGLPLNATPVLLEDEFKRFGLIKSGGIQVRSNRQQGFCFGFVEFEVASAVQQAIEASPIMIGGRQAYVEEKRSTNSRVNNRGRLPTGRG------SSFRNEGVRWRGNYGGGRGYSRGDFNGRTEFG-NRGSNRGGFSNH-GGDGYQRADNMGSNGGRVNRAGGMAVNGTAKTMAPRVSATA 469
BLAST of XM_017386781.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QSK5 ((G3BP-like protein {ECO:0000313|EMBL:PSS14104.1}))
HSP 1 Score: 503.056 bits (1294), Expect = 1.156e-173
Identity = 289/496 (58.27%), Postives = 361/496 (72.78%), Query Frame = 0
Match: A0A2R6QSK5 ((G3BP-like protein {ECO:0000313|EMBL:PSS14104.1}))
HSP 1 Score: 503.056 bits (1294), Expect = 1.156e-173
Identity = 289/496 (58.27%), Postives = 361/496 (72.78%), Query Frame = 0
Query: 1 MAAATEAGAAEVVAPPPAQTVGNAFVAQYYKILHHSPSLVHRFYQDISQLGRPEEDGSTSITTTMTAINEKVLSLHYDDYKAEIKSVDAQESLSSGVHVLVTGYMTGKDNIERNFTQSFFLAPQDRGGYFVLNDMFQYVDKVSIAESKTQAFSVEVEIPVTAEQEQVVTEAAPVEDDHITEQTNGVAEEANGEVH--SPFENGKIVEATEEQEEEPVAEVVNAVPDDSQMVVEANVKTEEAPKKSYASIVKDLKVNSLPFSSPPPASRKTPSKSQEKKVNHAPPTVSSAE--VSGA-APESGKSQDGEAEGYSIYIKGLPYDATPALLEDEFKKFGAIKNGGIQVRS-KQGFCFGFVEFEEESAVHNAVKASPITLGGRPAVIEEKRSTNSRVTNRGRFPAGRGVGFRNEAGFRNEGMRGRGNYGGGRGYNRAEFSGRSEFSNNRGNNRGGSSNRGGGDGFQRTENSANGGRVTRGGGLSGSGAAKNLAPRVPASA 490
MA A EA + P AQ VGNAFV QYY+I H SP+LVHRFYQDIS+LGRPE+DG+ SITTTM AIN K+LSL+Y +Y EIKSVDAQES + GVHVLVTG++ GKD + RNFTQ+FFLAPQD+ GYFVLNDM +YV+ ++ + Q + +VE +T E + +PV++ H++EQT E EV SP NG++ EE AEVV+ VPDDS MVVE+N K EE PKKSYASIV D+K + + SSP A R++ +K QE++VN P +VS+AE VSG+ A E+G +Q+GEA+GYSIYI+GLP +A PALLEDEFKKFG IK+ GIQVRS KQGFCFGFVEFE SAV A++ASPIT+GGR A +EEKRSTNSRV+NRGRFP GRG GFRN+ GRG YG GRGY+R++ +GR+E++ NRG NRGG SNR G DG+QR +G R+ RGGG+ +G A+ +APRV A+A
Sbjct: 1 MAEAIEAA----MQPFSAQVVGNAFVQQYYRIQHLSPALVHRFYQDISKLGRPEDDGTMSITTTMQAINAKILSLNYGEYNTEIKSVDAQESYNGGVHVLVTGHLDGKDIMIRNFTQTFFLAPQDK-GYFVLNDMVRYVEDIN-HHNGNQNSNNDVEAHLTPEHDH-----SPVQEIHVSEQTVDPVEVNEEEVLNPSPSNNGEVSVVEEEVPV---AEVVDEVPDDSLMVVESNSKIEEVPKKSYASIVMDMKESVVMLSSPVLAPRRSVAKIQEQQVNFTPASVSAAETPVSGSDAMENGNNQEGEADGYSIYIRGLPLNAVPALLEDEFKKFGPIKSDGIQVRSNKQGFCFGFVEFEVASAVQKAIEASPITIGGRQAFVEEKRSTNSRVSNRGRFPPGRGYGFRNDG--------GRGIYGSGRGYSRSDVNGRTEYA-NRGYNRGGFSNR-GPDGYQR-----DGSRMNRGGGMVANGTARTMAPRVSATA 467
BLAST of XM_017386781.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6URC5 ((putative G3BP-like protein isoform X2 {ECO:0000313|RefSeq:XP_027093099.1}))
HSP 1 Score: 502.671 bits (1293), Expect = 1.702e-173
Identity = 288/477 (60.38%), Postives = 360/477 (75.47%), Query Frame = 0
Match: A0A6P6URC5 ((putative G3BP-like protein isoform X2 {ECO:0000313|RefSeq:XP_027093099.1}))
HSP 1 Score: 502.671 bits (1293), Expect = 1.702e-173
Identity = 288/477 (60.38%), Postives = 360/477 (75.47%), Query Frame = 0
Query: 15 PPPAQTVGNAFVAQYYKILHHSPSLVHRFYQDISQLGRPEEDGSTSITTTMTAINEKVLSLHYDDYKAEIKSVDAQESLSSGVHVLVTGYMTGKDNIERNFTQSFFLAPQDRGGYFVLNDMFQYVDKVSIAESKTQAFSVEVEIPVTAEQEQVVTEAAPVEDDHITEQTNGVAEE-ANGEVHSPFENGKIVEATEEQEEEPVAEVVNAVPDDSQMVVEANVKTEEAPKKSYASIVKDLKVNSLPFSSPPPASRKTPSKSQEKKVNHAPPTVSSAEVSGAAPESGKSQDGEAEGYSIYIKGLPYDATPALLEDEFKKFGAIKNGGIQVRSKQGFCFGFVEFEEESAVHNAVKASPITLGGRPAVIEEKRSTNSRVTNRGRFPAGRGVGFRNEAGFRNEGMRGRGNYGGGRGYNRAEFSGRSEFSNNRGNNRGGSSNRGGGDGFQRTENSANGGRVTRGGGLSGSGAAKNLAPRVPASA 490
P AQ VGNAFV QYY ILHHSP LV+RFYQD+S+LGRP +DGS SITTTM AINEK+LSL+Y++++AEI+SVDAQES + GV VLVTGY+TG DN+ RNF+QSFFLAPQDRG YFVLND+F+YV+ + + Q + EV PVT EQ V+++H++EQ+ AEE + GEV++P ENG+I A +EE PVAEV++ V D+ Q+VVE+N K EE PKKSYASIV DLK +++ FSSP PA RK+ KSQE+ + P A ++G +QDGEA+GYSIYIKGLP +AT LLE+EFKKFG I+NGGIQVRS +GFCFGFVEFE SAV A++ASPI +GGR A++EEKRSTNSR NRGR+ +GR +GFRNEG+RGRGNYGGGRGY+R +F GR+EF NNRG NRG +SNR GGDG+QR++ +NGGR+ R GG +G KN+ PRV A+A
Sbjct: 12 PVSAQVVGNAFVQQYYHILHHSPELVYRFYQDMSKLGRPGDDGSMSITTTMQAINEKILSLNYEEFRAEIRSVDAQESFNGGVQVLVTGYLTGNDNMIRNFSQSFFLAPQDRG-YFVLNDIFRYVENGN-QQDTNQGVANEVVAPVTPEQN---PPPPAVQENHVSEQSTSSAEEISGGEVYNPPENGEIPNA---EEEVPVAEVLDEVQDEMQIVVESNTKIEEVPKKSYASIVMDLKESAVAFSSPTPAPRKSVPKSQEQVIPPPEPESDGLVPRPDAVDNGNNQDGEADGYSIYIKGLPMNATVTLLENEFKKFGPIRNGGIQVRSNRGFCFGFVEFEVPSAVQKAIEASPIAIGGRQAIVEEKRSTNSRGNNRGRYQSGR------VSGFRNEGVRGRGNYGGGRGYSRGDFGGRNEF-NNRGGNRGVASNR-GGDGYQRSD--SNGGRMNRSGGGMANGTTKNMTPRVSATA 470
BLAST of XM_017386781.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6WG63 ((putative G3BP-like protein isoform X2 {ECO:0000313|RefSeq:XP_027114404.1}))
HSP 1 Score: 502.671 bits (1293), Expect = 1.798e-173
Identity = 288/477 (60.38%), Postives = 360/477 (75.47%), Query Frame = 0
Match: A0A6P6WG63 ((putative G3BP-like protein isoform X2 {ECO:0000313|RefSeq:XP_027114404.1}))
HSP 1 Score: 502.671 bits (1293), Expect = 1.798e-173
Identity = 288/477 (60.38%), Postives = 360/477 (75.47%), Query Frame = 0
Query: 15 PPPAQTVGNAFVAQYYKILHHSPSLVHRFYQDISQLGRPEEDGSTSITTTMTAINEKVLSLHYDDYKAEIKSVDAQESLSSGVHVLVTGYMTGKDNIERNFTQSFFLAPQDRGGYFVLNDMFQYVDKVSIAESKTQAFSVEVEIPVTAEQEQVVTEAAPVEDDHITEQTNGVAEE-ANGEVHSPFENGKIVEATEEQEEEPVAEVVNAVPDDSQMVVEANVKTEEAPKKSYASIVKDLKVNSLPFSSPPPASRKTPSKSQEKKVNHAPPTVSSAEVSGAAPESGKSQDGEAEGYSIYIKGLPYDATPALLEDEFKKFGAIKNGGIQVRSKQGFCFGFVEFEEESAVHNAVKASPITLGGRPAVIEEKRSTNSRVTNRGRFPAGRGVGFRNEAGFRNEGMRGRGNYGGGRGYNRAEFSGRSEFSNNRGNNRGGSSNRGGGDGFQRTENSANGGRVTRGGGLSGSGAAKNLAPRVPASA 490
P AQ VGNAFV QYY ILHHSP LV+RFYQD+S+LGRP +DGS SITTTM AINEK+LSL+Y+ ++AEI+SVDAQES + GV VLVTGY+TG DN+ RNF+QSFFLAPQDRG YFVLND+F+YV+ + + Q + EV PVT EQ+ V+++H++EQ+ AEE + GEV++P ENG+I A +EE PVAEV++ V D+ Q+VVE+N K EE PKKSYASIV DLK +++ FSSP PA RK+ KSQE+ + P A ++G +QDGEA+GYSIYIKGLP +AT LLE+EFKKFG I+NGGIQVRS +GFCFGFVEFE SAV A++ASPI +GGR A++EEKRSTNSR NRGR+ +GR +GFRNEG+RGRGNYGGGRGY+R +F GR+EF NNRG NRG +SNR GGDG+QR++ +NGGR+ R GG +G KN+ PRV A+A
Sbjct: 12 PVSAQVVGNAFVQQYYHILHHSPELVYRFYQDMSKLGRPGDDGSMSITTTMQAINEKILSLNYEQFRAEIRSVDAQESFNGGVQVLVTGYLTGNDNMIRNFSQSFFLAPQDRG-YFVLNDIFRYVENGN-QQDANQGVANEVVAPVTPEQD---PPPPAVQENHVSEQSTSSAEEISGGEVYNPPENGEIPNA---EEEVPVAEVLDEVQDEMQIVVESNTKIEEVPKKSYASIVMDLKESAVAFSSPTPAPRKSVPKSQEQVIPPPEPESDGLVPRPDAVDNGNNQDGEADGYSIYIKGLPMNATVTLLENEFKKFGPIRNGGIQVRSNRGFCFGFVEFEVPSAVQKAIEASPIAIGGRQAIVEEKRSTNSRGNNRGRYQSGR------VSGFRNEGVRGRGNYGGGRGYSRGDFGGRNEF-NNRGGNRGVASNR-GGDGYQRSD--SNGGRMNRSGGGMANGTTKNMTPRVSATA 470
BLAST of XM_017386781.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6URE9 ((putative G3BP-like protein isoform X1 {ECO:0000313|RefSeq:XP_027093093.1}))
HSP 1 Score: 500.745 bits (1288), Expect = 1.021e-172
Identity = 289/479 (60.33%), Postives = 361/479 (75.37%), Query Frame = 0
Match: A0A6P6URE9 ((putative G3BP-like protein isoform X1 {ECO:0000313|RefSeq:XP_027093093.1}))
HSP 1 Score: 500.745 bits (1288), Expect = 1.021e-172
Identity = 289/479 (60.33%), Postives = 361/479 (75.37%), Query Frame = 0
Query: 15 PPPAQTVGNAFVAQYYKILHHSPSLVHRFYQDISQLGRPEEDGSTSITTTMTAINEKVLSLHYDDYKAEIKSVDAQESLSSGVHVLVTGYMTGKDNIERNFTQSFFLAPQDRGGYFVLNDMFQYVDKVSIAESKTQAFSVEVEIPVTAEQEQVVTEAAPVEDDHITEQTNGVAEE-ANGEVHSPFENGKIVEATEEQEEEPVAEVVNAVPDDSQMVVEANVKTEEAPKKSYASIVKDLKVNSLPFSSPPPASRKTPSKSQEKKVNHAPPTVSSAEVSGAAPESGKSQDGEAEGYSIYIKGLPYDATPALLEDEFKKFGAIKNGGIQVRS--KQGFCFGFVEFEEESAVHNAVKASPITLGGRPAVIEEKRSTNSRVTNRGRFPAGRGVGFRNEAGFRNEGMRGRGNYGGGRGYNRAEFSGRSEFSNNRGNNRGGSSNRGGGDGFQRTENSANGGRVTRGGGLSGSGAAKNLAPRVPASA 490
P AQ VGNAFV QYY ILHHSP LV+RFYQD+S+LGRP +DGS SITTTM AINEK+LSL+Y++++AEI+SVDAQES + GV VLVTGY+TG DN+ RNF+QSFFLAPQDR GYFVLND+F+YV+ + + Q + EV PVT EQ V+++H++EQ+ AEE + GEV++P ENG+I A +EE PVAEV++ V D+ Q+VVE+N K EE PKKSYASIV DLK +++ FSSP PA RK+ KSQE+ + P A ++G +QDGEA+GYSIYIKGLP +AT LLE+EFKKFG I+NGGIQVRS +QGFCFGFVEFE SAV A++ASPI +GGR A++EEKRSTNSR NRGR+ +GR +GFRNEG+RGRGNYGGGRGY+R +F GR+EF NNRG NRG +SNR GGDG+QR++ +NGGR+ R GG +G KN+ PRV A+A
Sbjct: 12 PVSAQVVGNAFVQQYYHILHHSPELVYRFYQDMSKLGRPGDDGSMSITTTMQAINEKILSLNYEEFRAEIRSVDAQESFNGGVQVLVTGYLTGNDNMIRNFSQSFFLAPQDR-GYFVLNDIFRYVENGN-QQDTNQGVANEVVAPVTPEQN---PPPPAVQENHVSEQSTSSAEEISGGEVYNPPENGEIPNA---EEEVPVAEVLDEVQDEMQIVVESNTKIEEVPKKSYASIVMDLKESAVAFSSPTPAPRKSVPKSQEQVIPPPEPESDGLVPRPDAVDNGNNQDGEADGYSIYIKGLPMNATVTLLENEFKKFGPIRNGGIQVRSNRQQGFCFGFVEFEVPSAVQKAIEASPIAIGGRQAIVEEKRSTNSRGNNRGRYQSGR------VSGFRNEGVRGRGNYGGGRGYSRGDFGGRNEF-NNRGGNRGVASNR-GGDGYQRSD--SNGGRMNRSGGGMANGTTKNMTPRVSATA 472
BLAST of XM_017386781.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6WFZ6 ((putative G3BP-like protein isoform X1 {ECO:0000313|RefSeq:XP_027114398.1}))
HSP 1 Score: 500.745 bits (1288), Expect = 1.033e-172
Identity = 289/479 (60.33%), Postives = 361/479 (75.37%), Query Frame = 0
Match: A0A6P6WFZ6 ((putative G3BP-like protein isoform X1 {ECO:0000313|RefSeq:XP_027114398.1}))
HSP 1 Score: 500.745 bits (1288), Expect = 1.033e-172
Identity = 289/479 (60.33%), Postives = 361/479 (75.37%), Query Frame = 0
Query: 15 PPPAQTVGNAFVAQYYKILHHSPSLVHRFYQDISQLGRPEEDGSTSITTTMTAINEKVLSLHYDDYKAEIKSVDAQESLSSGVHVLVTGYMTGKDNIERNFTQSFFLAPQDRGGYFVLNDMFQYVDKVSIAESKTQAFSVEVEIPVTAEQEQVVTEAAPVEDDHITEQTNGVAEE-ANGEVHSPFENGKIVEATEEQEEEPVAEVVNAVPDDSQMVVEANVKTEEAPKKSYASIVKDLKVNSLPFSSPPPASRKTPSKSQEKKVNHAPPTVSSAEVSGAAPESGKSQDGEAEGYSIYIKGLPYDATPALLEDEFKKFGAIKNGGIQVRS--KQGFCFGFVEFEEESAVHNAVKASPITLGGRPAVIEEKRSTNSRVTNRGRFPAGRGVGFRNEAGFRNEGMRGRGNYGGGRGYNRAEFSGRSEFSNNRGNNRGGSSNRGGGDGFQRTENSANGGRVTRGGGLSGSGAAKNLAPRVPASA 490
P AQ VGNAFV QYY ILHHSP LV+RFYQD+S+LGRP +DGS SITTTM AINEK+LSL+Y+ ++AEI+SVDAQES + GV VLVTGY+TG DN+ RNF+QSFFLAPQDR GYFVLND+F+YV+ + + Q + EV PVT EQ+ V+++H++EQ+ AEE + GEV++P ENG+I A +EE PVAEV++ V D+ Q+VVE+N K EE PKKSYASIV DLK +++ FSSP PA RK+ KSQE+ + P A ++G +QDGEA+GYSIYIKGLP +AT LLE+EFKKFG I+NGGIQVRS +QGFCFGFVEFE SAV A++ASPI +GGR A++EEKRSTNSR NRGR+ +GR +GFRNEG+RGRGNYGGGRGY+R +F GR+EF NNRG NRG +SNR GGDG+QR++ +NGGR+ R GG +G KN+ PRV A+A
Sbjct: 12 PVSAQVVGNAFVQQYYHILHHSPELVYRFYQDMSKLGRPGDDGSMSITTTMQAINEKILSLNYEQFRAEIRSVDAQESFNGGVQVLVTGYLTGNDNMIRNFSQSFFLAPQDR-GYFVLNDIFRYVENGN-QQDANQGVANEVVAPVTPEQD---PPPPAVQENHVSEQSTSSAEEISGGEVYNPPENGEIPNA---EEEVPVAEVLDEVQDEMQIVVESNTKIEEVPKKSYASIVMDLKESAVAFSSPTPAPRKSVPKSQEQVIPPPEPESDGLVPRPDAVDNGNNQDGEADGYSIYIKGLPMNATVTLLENEFKKFGPIRNGGIQVRSNRQQGFCFGFVEFEVPSAVQKAIEASPIAIGGRQAIVEEKRSTNSRGNNRGRYQSGR------VSGFRNEGVRGRGNYGGGRGYSRGDFGGRNEF-NNRGGNRGVASNR-GGDGYQRSD--SNGGRMNRSGGGMANGTTKNMTPRVSATA 472
BLAST of XM_017386781.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J0ZKR1 ((putative G3BP-like protein isoform X1 {ECO:0000313|RefSeq:XP_021275396.1}))
HSP 1 Score: 499.59 bits (1285), Expect = 3.604e-172
Identity = 280/495 (56.57%), Postives = 355/495 (71.72%), Query Frame = 0
Match: A0A6J0ZKR1 ((putative G3BP-like protein isoform X1 {ECO:0000313|RefSeq:XP_021275396.1}))
HSP 1 Score: 499.59 bits (1285), Expect = 3.604e-172
Identity = 280/495 (56.57%), Postives = 355/495 (71.72%), Query Frame = 0
Query: 3 AATEAGAAEVVAPPPAQTVGNAFVAQYYKILHHSPSLVHRFYQDISQLGRPEEDGSTSITTTMTAINEKVLSLHYDDYKAEIKSVDAQESLSSGVHVLVTGYMTGKDNIERNFTQSFFLAPQDRGGYFVLNDMFQYVDKVSIAESKTQAFSVEVEIPVTAEQEQVVTEAAPVEDDHITEQTNGVAEEANG-EVHSPFENGKIVEATEEQEEEPVAEVVNAVPDDSQMVVEANVKTEEAPKKSYASIVKDLKVNSLPFSSPPPASRKTPSKSQEK----KVNHAPPTVSSAEVSG-AAPESGKSQDGEAEGYSIYIKGLPYDATPALLEDEFKKFGAIKNGGIQVRSKQGFCFGFVEFEEESAVHNAVKASPITLGGRPAVIEEKRSTNSRVTNRGRFPAGRGVGFRNEAGFRNEGMRGRGNYGGGRGYNRAEFSGRSEFSNNRGNNRGGSSNRGGGDGFQRTEN-SANGGRVTRGGGLSGSGAAKNLAPRVPASA 490
A+TE + P A VGNAFV QYY ILH SP+LVHRFY D S+LGRPEE+G SITTTM AINEK+LSL Y ++ A+I +VDAQ+S GV VLVTGY+ GKD ++R FTQSFFLAPQD+ GYFVLND+F+YVD S +Q +++ +T+EQ +++P ++HI EQ EEANG EV++P ENG + + E++E PVAEVV+ +PDDSQ+V + N K EE PKKSYASIVK +K N++ S+P + K+ KS E+ AP S A++S E+G +QD EAEG SIY+KGLP +ATP++LE+EFKKFG IK+GGIQVRS++GFCFGFVEFE SAV +A++ASPI +GGR AV+EEKRST+ N+GR +G G AG+RNEG RGRGNYG GRGYNR EF R+EF NR NNRGG S+R GGDG+QR E+ +NGGRV+R GGL+ + AAKN+APRV A A
Sbjct: 2 ASTEQQVPAGITAPTADVVGNAFVHQYYLILHQSPALVHRFYHDSSKLGRPEENGVMSITTTMQAINEKILSLCYGEFTAQITTVDAQDSHDGGVLVLVTGYLIGKDKVKRKFTQSFFLAPQDK-GYFVLNDVFRYVDDAE-HHSGSQDPVDDIKASLTSEQ-----DSSPASENHIVEQPAASPEEANGPEVYNPSENG---DGSIEEDEAPVAEVVDEMPDDSQVVADYNSKIEEVPKKSYASIVKVMKENAVSLSAPTHSPVKSAVKSHEQPGTAAPPTAPAPASDAQISSNIVAENGNNQDAEAEGPSIYVKGLPLNATPSMLENEFKKFGPIKSGGIQVRSQKGFCFGFVEFEVASAVQSAIEASPINIGGRKAVVEEKRSTSR--GNKGRSSSGAG------AGYRNEGGRGRGNYGSGRGYNRGEFGNRAEFG-NRSNNRGGYSSR-GGDGYQRGEHMGSNGGRVSRAGGLTVNAAAKNVAPRVSAPA 476
BLAST of XM_017386781.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6P6R1 ((G3BP-like protein {ECO:0000313|EMBL:PSR86332.1}))
HSP 1 Score: 498.434 bits (1282), Expect = 1.074e-171
Identity = 291/498 (58.43%), Postives = 365/498 (73.29%), Query Frame = 0
Match: A0A2R6P6R1 ((G3BP-like protein {ECO:0000313|EMBL:PSR86332.1}))
HSP 1 Score: 498.434 bits (1282), Expect = 1.074e-171
Identity = 291/498 (58.43%), Postives = 365/498 (73.29%), Query Frame = 0
Query: 1 MAAATEAGAAEVVAPPPAQTVGNAFVAQYYKILHHSPSLVHRFYQDISQLGRPEEDGSTSITTTMTAINEKVLSLHYDDYKAEIKSVDAQESLSSGVHVLVTGYMTGKDNIERNFTQSFFLAPQDRGGYFVLNDMFQYVDKVSIAESKTQAFSVEVEIPVTAEQEQVVTEAAPVEDDHITEQTNGVAEEANGEVHSPFENGKIV-EATEEQEEEPVAEVVNAVPDDSQMVVEANVKTEEAPKKSYASIVKDLKVNSLPFSSPPPASRKTPSKSQEKKVN--HAPPTVSSAEVSGAAP-ESGKSQDGEAEGYSIYIKGLPYDATPALLEDEFKKFGAIKNGGIQVRS-KQGFCFGFVEFEEESAVHNAVKASPITLGGRPAVIEEKRSTNSRVTN-RGRFPAGRGVGFRNEAGFRNEGMRGRGNYGGGRGYNRAEFSGRSEFSNNRGNNRGGSSNRGGGDGFQRTENS--ANGGRVTRGGGLSGSGAAKNLAPRVPASA 490
M ATEA A+ P AQ VGNAFV QYY I H SP LVHRFYQDIS+LGRP++DG+ S T TM AI+EK+LSL Y +++AEIKSVDAQES + GVHVLVTGY+ GKDN+ RNFTQSFFLAPQ++ GYFVLND+F+YV+ + + + + EVE P+T EQ PV++ HI E+T VA NGE NG I E + +EE PVAEVV+ VPDDS +V+E+++K EE PKKSYAS+V +KV++ P SSP PA +++ +KSQE+ VN A P+ + A VS P E+G +Q EA+GYSIYI+GLP +ATPALLEDEFK+FG IK GGIQVRS KQGFCFGFVEFE ES+V A++ASP+ +GGR A +EEK+STNSRV + RGRFP GRG +GFR+EGMRGRGNYG GRGY +FSG++EF NRG+NRG SNR GGDG+QR++++ GGR RGGG++ +G K AP V A+A
Sbjct: 1 MTVATEAAMAQ--QPVSAQVVGNAFVQQYYNIQHQSPGLVHRFYQDISKLGRPDDDGTMSTTRTMHAIDEKILSLKYGEFRAEIKSVDAQESYNGGVHVLVTGYLVGKDNMIRNFTQSFFLAPQEK-GYFVLNDIFRYVEDIKHCNEEQSSVN-EVEAPLTPEQ-----GPPPVQEIHIPEETM-VAVVVNGEEAV---NGSINGEVSVVEEEVPVAEVVDEVPDDSNVVIESHLKIEEVPKKSYASVVMVMKVSATPLSSPAPAPQRSLAKSQEQPVNLAQALPSAAEAPVSSVDPIENGDNQGSEADGYSIYIRGLPMNATPALLEDEFKQFGPIKIGGIQVRSNKQGFCFGFVEFEVESSVQKAIEASPVAIGGRQAFVEEKKSTNSRVNSYRGRFPGGRG------SGFRSEGMRGRGNYGSGRGYYTRDFSGKTEFG-NRGSNRGVFSNR-GGDGYQRSDDNMGGTGGRANRGGGMAVNGTPKPAAPPVSATA 477
BLAST of XM_017386781.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J0ZKG7 ((putative G3BP-like protein isoform X2 {ECO:0000313|RefSeq:XP_021275398.1}))
HSP 1 Score: 494.582 bits (1272), Expect = 3.536e-170
Identity = 279/495 (56.36%), Postives = 354/495 (71.52%), Query Frame = 0
Match: A0A6J0ZKG7 ((putative G3BP-like protein isoform X2 {ECO:0000313|RefSeq:XP_021275398.1}))
HSP 1 Score: 494.582 bits (1272), Expect = 3.536e-170
Identity = 279/495 (56.36%), Postives = 354/495 (71.52%), Query Frame = 0
Query: 3 AATEAGAAEVVAPPPAQTVGNAFVAQYYKILHHSPSLVHRFYQDISQLGRPEEDGSTSITTTMTAINEKVLSLHYDDYKAEIKSVDAQESLSSGVHVLVTGYMTGKDNIERNFTQSFFLAPQDRGGYFVLNDMFQYVDKVSIAESKTQAFSVEVEIPVTAEQEQVVTEAAPVEDDHITEQTNGVAEEANG-EVHSPFENGKIVEATEEQEEEPVAEVVNAVPDDSQMVVEANVKTEEAPKKSYASIVKDLKVNSLPFSSPPPASRKTPSKSQEK----KVNHAPPTVSSAEV-SGAAPESGKSQDGEAEGYSIYIKGLPYDATPALLEDEFKKFGAIKNGGIQVRSKQGFCFGFVEFEEESAVHNAVKASPITLGGRPAVIEEKRSTNSRVTNRGRFPAGRGVGFRNEAGFRNEGMRGRGNYGGGRGYNRAEFSGRSEFSNNRGNNRGGSSNRGGGDGFQRTEN-SANGGRVTRGGGLSGSGAAKNLAPRVPASA 490
A+TE + P A VGNAFV QYY ILH SP+LVHRFY D S+LGRPEE+G SITTTM AINEK+LSL Y ++ A+I +VDAQ+S GV VLVTGY+ GKD ++R FTQSFFLAPQD+ GYFVLND+F+YVD S +Q +++ +T+EQ +++P ++HI EQ EEANG EV++P ENG + + E++E PVAEVV+ +PDDSQ+V + N K EE PKKSYASIV +K N++ S+P + K+ KS E+ AP S A++ S E+G +QD EAEG SIY+KGLP +ATP++LE+EFKKFG IK+GGIQVRS++GFCFGFVEFE SAV +A++ASPI +GGR AV+EEKRST+ N+GR +G G AG+RNEG RGRGNYG GRGYNR EF R+EF NR NNRGG S+R GGDG+QR E+ +NGGRV+R GGL+ + AAKN+APRV A A
Sbjct: 2 ASTEQQVPAGITAPTADVVGNAFVHQYYLILHQSPALVHRFYHDSSKLGRPEENGVMSITTTMQAINEKILSLCYGEFTAQITTVDAQDSHDGGVLVLVTGYLIGKDKVKRKFTQSFFLAPQDK-GYFVLNDVFRYVDDAE-HHSGSQDPVDDIKASLTSEQ-----DSSPASENHIVEQPAASPEEANGPEVYNPSENG---DGSIEEDEAPVAEVVDEMPDDSQVVADYNSKIEEVPKKSYASIV--MKENAVSLSAPTHSPVKSAVKSHEQPGTAAPPTAPAPASDAQISSNIVAENGNNQDAEAEGPSIYVKGLPLNATPSMLENEFKKFGPIKSGGIQVRSQKGFCFGFVEFEVASAVQSAIEASPINIGGRKAVVEEKRSTSR--GNKGRSSSGAG------AGYRNEGGRGRGNYGSGRGYNRGEFGNRAEFG-NRSNNRGGYSSR-GGDGYQRGEHMGSNGGRVSRAGGLTVNAAAKNVAPRVSAPA 474
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5C5T9 | E-Value: 0.000e+0, PID: 61.00 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8550... [more] |
| A0A5B6Z364 | E-Value: 4.877e-179, PID: 61.55 | (Putative G3BP-like protein isoform X2 {ECO:000031... [more] |
| A0A2R6QSK5 | E-Value: 1.156e-173, PID: 58.27 | (G3BP-like protein {ECO:0000313|EMBL:PSS14104.1})[more] |
| A0A6P6URC5 | E-Value: 1.702e-173, PID: 60.38 | (putative G3BP-like protein isoform X2 {ECO:000031... [more] |
| A0A6P6WG63 | E-Value: 1.798e-173, PID: 60.38 | (putative G3BP-like protein isoform X2 {ECO:000031... [more] |
| A0A6P6URE9 | E-Value: 1.021e-172, PID: 60.33 | (putative G3BP-like protein isoform X1 {ECO:000031... [more] |
| A0A6P6WFZ6 | E-Value: 1.033e-172, PID: 60.33 | (putative G3BP-like protein isoform X1 {ECO:000031... [more] |
| A0A6J0ZKR1 | E-Value: 3.604e-172, PID: 56.57 | (putative G3BP-like protein isoform X1 {ECO:000031... [more] |
| A0A2R6P6R1 | E-Value: 1.074e-171, PID: 58.43 | (G3BP-like protein {ECO:0000313|EMBL:PSR86332.1})[more] |
| A0A6J0ZKG7 | E-Value: 3.536e-170, PID: 56.36 | (putative G3BP-like protein isoform X2 {ECO:000031... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |