Resource Type:
Polypeptide
Name:
XM_017386046.1
Identifier:
XM_017386046.1-protein
Sequence:
MMASKLMHVVQYSSYGKGAANLQHAEIPIPTPKKGEVLVKVEAVGINPID
YKIQGGFLRPFVPKKFPHVPGSDIAGEVVELGYGVTKFKKGDKIVAMLGS
ATGGGLAEYAVAKEEMTVIKPYEVSAVECAGLGTPALTAYQCLITAGVRL
DKTGPPMNVLVTAASGGVGHYAVQLAKLGNTFVTATCGARNAAFVRSLGA
DEILDYKTPEGQALISPSGRKYDAVIHCSTGMSWSTFNNVLSLRGKVVDI
TPSPSALATFAMKKLSCSKKQLIPLLVSSKAEDLQFLVKLMKEKKLRTVV
DSRYHLSKAEDAWAKCIEGHAVGKIIVVA
Sequence Length:
329
Sequence Checksum:
82cf9c88e347caf3fd829bb0592c1757
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017386046.1, derives from mRNA, XM_017386046.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017386046.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017386046.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5IBH2 ((Quinone-oxidoreductase-like protein {ECO:0000313|EMBL:KAB2636607.1}))
HSP 1 Score: 471.47 bits (1212), Expect = 7.845e-166
Identity = 233/328 (71.04%), Postives = 269/328 (82.01%), Query Frame = 0
Match: A0A5N5IBH2 ((Quinone-oxidoreductase-like protein {ECO:0000313|EMBL:KAB2636607.1}))
HSP 1 Score: 471.47 bits (1212), Expect = 7.845e-166
Identity = 233/328 (71.04%), Postives = 269/328 (82.01%), Query Frame = 0
Query: 2 MASKLMHVVQYSSYGKGAANLQHAEIPIPTPKKGEVLVKVEAVGINPIDYKIQGGFLRPFVPKKFPHVPGSDIAGEVVELGYGVTKFKKGDKIVAMLGSA-TGGGLAEYAVAKEEMTVIKPYEVSAVECAGLGTPALTAYQCLI-TAGVRLDKTGPPMNVLVTAASGGVGHYAVQLAKLGNTFVTATCGARNAAFVRSLGADEILDYKTPEGQALISPSGRKYDAVIHCSTGMSWSTFNNVLSLRGKVVDITPSPSALATFAMKKLSCSKKQLIPLLVSSKAEDLQFLVKLMKEKKLRTVVDSRYHLSKAEDAWAKCIEGHAVGKIIV 327
MASKLMH VQY YG GA+ L+H E+PIPTP KGEVL+K+EA INPID+KIQ G LRPF+P+KFP+ P SD+AGEVVE+G GV KFK GDK+VA L A +GGGLAEY A E +TV +P EVSA E AGL LTA+QCL AGV+LD +G N+L+TAASGGVG YAVQLAKLGNT VTATCGARN FV+SLGADE+LDYKTPEG AL SPSGRKYDAV+HC+TG+ WSTF LS GKV+DITPSPSAL TFA+KKL+ SKKQL+PLL+S+KAE+L++LVKL+KE KLRTV+DS Y LSKAEDAWAK I GHA GKIIV
Sbjct: 4 MASKLMHAVQYDGYGGGASGLKHVEVPIPTPTKGEVLLKLEAASINPIDWKIQKGMLRPFLPRKFPYAPVSDVAGEVVEVGQGVQKFKPGDKVVAYLSQAVSGGGLAEYTAATENLTVTRPPEVSAAEGAGLPIAGLTAHQCLTQAAGVKLDGSGQQKNILITAASGGVGQYAVQLAKLGNTHVTATCGARNIEFVKSLGADEVLDYKTPEGAALNSPSGRKYDAVVHCATGIPWSTFEPNLSANGKVIDITPSPSALVTFALKKLTFSKKQLVPLLMSAKAENLEYLVKLVKEGKLRTVIDSTYPLSKAEDAWAKSISGHATGKIIV 331
BLAST of XM_017386046.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5GLX7 ((Quinone-oxidoreductase-like protein {ECO:0000313|EMBL:KAB2614280.1}))
HSP 1 Score: 471.085 bits (1211), Expect = 1.157e-165
Identity = 233/327 (71.25%), Postives = 268/327 (81.96%), Query Frame = 0
Match: A0A5N5GLX7 ((Quinone-oxidoreductase-like protein {ECO:0000313|EMBL:KAB2614280.1}))
HSP 1 Score: 471.085 bits (1211), Expect = 1.157e-165
Identity = 233/327 (71.25%), Postives = 268/327 (81.96%), Query Frame = 0
Query: 2 MASKLMHVVQYSSYGKGAANLQHAEIPIPTPKKGEVLVKVEAVGINPIDYKIQGGFLRPFVPKKFPHVPGSDIAGEVVELGYGVTKFKKGDKIVAMLGSATGGGLAEYAVAKEEMTVIKPYEVSAVECAGLGTPALTAYQCLI-TAGVRLDKTGPPMNVLVTAASGGVGHYAVQLAKLGNTFVTATCGARNAAFVRSLGADEILDYKTPEGQALISPSGRKYDAVIHCSTGMSWSTFNNVLSLRGKVVDITPSPSALATFAMKKLSCSKKQLIPLLVSSKAEDLQFLVKLMKEKKLRTVVDSRYHLSKAEDAWAKCIEGHAVGKIIV 327
MASKLMH VQY YG GA+ L+H E+PIPTP KGEVL+K+EA INPID+KIQ G LRPF+P+KFP+ P SD+AGEVVE+G GV KFK GDK+VA L A GGGLAEY A E +TV +P EVSA E AGL LTA+QCL AGV+LD +G N+L+TAASGGVG YAVQLAKLGNT VTATCGARN FV+SLGADE+LDYKTPEG AL SPSGRKYDAV+HC+TG+ WSTF LS GKV+DITPSPSAL TFA+KKL+ SKKQL+PLL+S+KAE+L++LVKL+KE KLRTV+DS Y LSKAEDAWAK I GHA GKIIV
Sbjct: 4 MASKLMHAVQYDGYGGGASGLKHVEVPIPTPTKGEVLLKLEAASINPIDWKIQKGMLRPFLPRKFPYAPVSDVAGEVVEVGQGVQKFKPGDKVVAYLSQA-GGGLAEYTAATENLTVTRPPEVSAAEGAGLPIAGLTAHQCLTQAAGVKLDGSGQQKNILITAASGGVGQYAVQLAKLGNTHVTATCGARNIEFVKSLGADEVLDYKTPEGAALNSPSGRKYDAVVHCATGIPWSTFEPNLSANGKVIDITPSPSALVTFALKKLTFSKKQLVPLLMSAKAENLEYLVKLVKEGKLRTVIDSTYPLSKAEDAWAKSISGHATGKIIV 329
BLAST of XM_017386046.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P6PU21 ((Putative NADPH:quinone reductase {ECO:0000313|EMBL:PRQ25438.1}) (1.6.5.5 {ECO:0000313|EMBL:PRQ25438.1}))
HSP 1 Score: 468.003 bits (1203), Expect = 1.752e-164
Identity = 229/327 (70.03%), Postives = 268/327 (81.96%), Query Frame = 0
Match: A0A2P6PU21 ((Putative NADPH:quinone reductase {ECO:0000313|EMBL:PRQ25438.1}) (1.6.5.5 {ECO:0000313|EMBL:PRQ25438.1}))
HSP 1 Score: 468.003 bits (1203), Expect = 1.752e-164
Identity = 229/327 (70.03%), Postives = 268/327 (81.96%), Query Frame = 0
Query: 2 MASKLMHVVQYSSYGKGAANLQHAEIPIPTPKKGEVLVKVEAVGINPIDYKIQGGFLRPFVPKKFPHVPGSDIAGEVVELGYGVTKFKKGDKIVAMLGSATGGGLAEYAVAKEEMTVIKPYEVSAVECAGLGTPALTAYQCLI-TAGVRLDKTGPPMNVLVTAASGGVGHYAVQLAKLGNTFVTATCGARNAAFVRSLGADEILDYKTPEGQALISPSGRKYDAVIHCSTGMSWSTFNNVLSLRGKVVDITPSPSALATFAMKKLSCSKKQLIPLLVSSKAEDLQFLVKLMKEKKLRTVVDSRYHLSKAEDAWAKCIEGHAVGKIIV 327
MA+KLM VQY SYG G + L+H E+PIPTPKK EVL+K+EA INPID+K+Q G LRPF+P+KFP++P SD+AGEVV++G GV KFK GDK+VA A GGG AE+A A E +TV +P EVSA E AGL LTA+QCL AGV+LD TGP N+LVTAASGGVGHYAVQLAKLGNT VTATCGARN FV+SLGADE+LDYKTPEG AL SPSGRKYDAVIHC+TG+ WSTF LS GKV+DITPSPSAL TFA+KKL+ SKKQL+PL V++KAE+L LVKL+KE KL+TV+DS+Y LSKAE+AWAK I+GHA GKIIV
Sbjct: 4 MAAKLMRAVQYDSYGGGPSGLKHVEVPIPTPKKDEVLLKLEAATINPIDWKVQKGVLRPFLPRKFPYIPVSDVAGEVVDVGQGVQKFKAGDKVVAFFTQANGGGFAEFATASESLTVTRPPEVSAAEGAGLPIAGLTAHQCLTQAAGVKLDGTGPQKNILVTAASGGVGHYAVQLAKLGNTHVTATCGARNVEFVKSLGADEVLDYKTPEGAALNSPSGRKYDAVIHCATGIPWSTFEPNLSPNGKVIDITPSPSALLTFALKKLTFSKKQLVPLFVNAKAENLDCLVKLVKEGKLKTVIDSKYPLSKAEEAWAKSIDGHATGKIIV 330
BLAST of XM_017386046.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5CE67 ((Alcohol dehydrogenase superfamily, zinc-type {ECO:0000313|EMBL:PON59346.1}) (Fragment))
HSP 1 Score: 468.389 bits (1204), Expect = 2.757e-164
Identity = 224/327 (68.50%), Postives = 268/327 (81.96%), Query Frame = 0
Match: A0A2P5CE67 ((Alcohol dehydrogenase superfamily, zinc-type {ECO:0000313|EMBL:PON59346.1}) (Fragment))
HSP 1 Score: 468.389 bits (1204), Expect = 2.757e-164
Identity = 224/327 (68.50%), Postives = 268/327 (81.96%), Query Frame = 0
Query: 2 MASKLMHVVQYSSYGKGAANLQHAEIPIPTPKKGEVLVKVEAVGINPIDYKIQGGFLRPFVPKKFPHVPGSDIAGEVVELGYGVTKFKKGDKIVAMLGSATGGGLAEYAVAKEEMTVIKPYEVSAVECAGLGTPALTAYQCLI-TAGVRLDKTGPPMNVLVTAASGGVGHYAVQLAKLGNTFVTATCGARNAAFVRSLGADEILDYKTPEGQALISPSGRKYDAVIHCSTGMSWSTFNNVLSLRGKVVDITPSPSALATFAMKKLSCSKKQLIPLLVSSKAEDLQFLVKLMKEKKLRTVVDSRYHLSKAEDAWAKCIEGHAVGKIIV 327
+A+KL+H VQY SYG GAA L+H E+PIPTPKK EVLVK+EAV +NP+D+KIQ G LRP P+KFPH+PG+D+AGEVVE+G GV KFK GDK+VA +G A GGGLAEY VA E +TV +P EVSA E AGL LTA+Q L AG++LD TG N+LVTAASGGVGHYAVQLAKLGNT VTATCGARN FV+SLGADE+LDYKTPEG AL SPSGRKYDAVIHC+ G+ WSTF LS GKV+D+TPSP+A TFA+KK++ S KQL+PL V+ K+E+L++LV L+KE KL++V+DSR+ LSKAEDAWAK I+GHA GKIIV
Sbjct: 29 LAAKLIHAVQYDSYGGGAAALKHVEVPIPTPKKNEVLVKLEAVALNPVDWKIQKGLLRPIYPRKFPHIPGTDVAGEVVEVGQGVNKFKAGDKVVATVGHANGGGLAEYVVAGESLTVARPPEVSAAEAAGLPIAGLTAHQALTQAAGIKLDGTGKEANILVTAASGGVGHYAVQLAKLGNTHVTATCGARNIEFVKSLGADEVLDYKTPEGAALKSPSGRKYDAVIHCTAGIPWSTFEPNLSKNGKVIDLTPSPAAFLTFALKKITFSSKQLVPLFVTPKSENLEYLVNLVKEGKLKSVIDSRHSLSKAEDAWAKSIDGHATGKIIV 355
BLAST of XM_017386046.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A540NMZ2 (PKS_ER domain-containing protein {ECO:0000259|SMART:SM00829})
HSP 1 Score: 466.463 bits (1199), Expect = 6.221e-164
Identity = 230/327 (70.34%), Postives = 267/327 (81.65%), Query Frame = 0
Match: A0A540NMZ2 (PKS_ER domain-containing protein {ECO:0000259|SMART:SM00829})
HSP 1 Score: 466.463 bits (1199), Expect = 6.221e-164
Identity = 230/327 (70.34%), Postives = 267/327 (81.65%), Query Frame = 0
Query: 2 MASKLMHVVQYSSYGKGAANLQHAEIPIPTPKKGEVLVKVEAVGINPIDYKIQGGFLRPFVPKKFPHVPGSDIAGEVVELGYGVTKFKKGDKIVAMLGSATGGGLAEYAVAKEEMTVIKPYEVSAVECAGLGTPALTAYQCLI-TAGVRLDKTGPPMNVLVTAASGGVGHYAVQLAKLGNTFVTATCGARNAAFVRSLGADEILDYKTPEGQALISPSGRKYDAVIHCSTGMSWSTFNNVLSLRGKVVDITPSPSALATFAMKKLSCSKKQLIPLLVSSKAEDLQFLVKLMKEKKLRTVVDSRYHLSKAEDAWAKCIEGHAVGKIIV 327
MASKLMH VQY YG GA+ L+H E+PIPTP KGEVL+K+EA INPID+KIQ G LRPF+P+K P+ P +D+AGEVVE+G GV KFK GDK+VA L A GGGLAEYA A E +TV +P EVSA E AGL LTA+QCL AGV+LD +G N+L+TAASGGVG YAVQLAKLGNT VTATCGARN FV+SLGADE+LDYKTPEG AL SPSGRKYDAV+HC+TG+ WSTF LS GKV+DITP PSAL TFA+KKL+ SKKQL+PLL+++KAE+L++LVKL+KE KLRTV+DS Y LSKAEDAWAK I GHA GKIIV
Sbjct: 4 MASKLMHAVQYDGYGGGASGLKHVEVPIPTPTKGEVLLKLEAASINPIDWKIQKGMLRPFLPRKLPYTPVTDVAGEVVEVGQGVQKFKPGDKVVAYLSQA-GGGLAEYAAATENLTVTRPPEVSAAEGAGLPIAGLTAHQCLTQAAGVKLDGSGQQKNILITAASGGVGQYAVQLAKLGNTHVTATCGARNIEFVKSLGADEVLDYKTPEGAALNSPSGRKYDAVVHCATGIPWSTFEPNLSANGKVIDITPGPSALVTFALKKLTFSKKQLVPLLMNAKAENLEYLVKLVKEGKLRTVIDSTYPLSKAEDAWAKSISGHATGKIIV 329
BLAST of XM_017386046.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314ZIG2 ((Putative quinone-oxidoreductase homolog chloroplastic {ECO:0000313|EMBL:PQQ19109.1}))
HSP 1 Score: 466.077 bits (1198), Expect = 8.973e-164
Identity = 223/327 (68.20%), Postives = 268/327 (81.96%), Query Frame = 0
Match: A0A314ZIG2 ((Putative quinone-oxidoreductase homolog chloroplastic {ECO:0000313|EMBL:PQQ19109.1}))
HSP 1 Score: 466.077 bits (1198), Expect = 8.973e-164
Identity = 223/327 (68.20%), Postives = 268/327 (81.96%), Query Frame = 0
Query: 2 MASKLMHVVQYSSYGKGAANLQHAEIPIPTPKKGEVLVKVEAVGINPIDYKIQGGFLRPFVPKKFPHVPGSDIAGEVVELGYGVTKFKKGDKIVAMLGSATGGGLAEYAVAKEEMTVIKPYEVSAVECAGLGTPALTAYQCLI-TAGVRLDKTGPPMNVLVTAASGGVGHYAVQLAKLGNTFVTATCGARNAAFVRSLGADEILDYKTPEGQALISPSGRKYDAVIHCSTGMSWSTFNNVLSLRGKVVDITPSPSALATFAMKKLSCSKKQLIPLLVSSKAEDLQFLVKLMKEKKLRTVVDSRYHLSKAEDAWAKCIEGHAVGKIIV 327
MASKL+H VQY SYG GA+ L+HAE+P+PTPKKGE+L+K+EA +NP+D+KIQ G RP +P+KFPH P +D+AGEVVE+G GV KFK GDK+VA L + GGGLAE+A A E +TV +P EVSA E AGL LTA+Q L AGV+LD +G N+L+TAASGGVG YAVQLAKLGNT VTATCGARN FV+SLGADE+LDYKTPEG AL SPSGRKYDAV+HCSTG+ WSTF LS GKV+D+TPSPSA TFA+KKL+ SKKQL+PL +S+K+E+L +LVKL+KE KL+TV+DS+Y LSKAEDAWAK I+GHA GKIIV
Sbjct: 1 MASKLIHAVQYDSYGGGASGLKHAEVPVPTPKKGEILLKLEAASLNPVDWKIQKGMFRPLMPRKFPHTPVTDVAGEVVEVGQGVQKFKPGDKVVAFLSHSNGGGLAEFAAASESLTVARPPEVSAAEGAGLPVAGLTAHQALTQAAGVKLDGSGQQKNILITAASGGVGQYAVQLAKLGNTHVTATCGARNIEFVKSLGADEVLDYKTPEGAALNSPSGRKYDAVVHCSTGIPWSTFEPNLSTNGKVIDLTPSPSAFFTFALKKLTFSKKQLVPLFMSAKSENLDYLVKLVKEGKLKTVIDSKYPLSKAEDAWAKSIDGHATGKIIV 327
BLAST of XM_017386046.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A540NMZ5 (PKS_ER domain-containing protein {ECO:0000259|SMART:SM00829})
HSP 1 Score: 465.692 bits (1197), Expect = 1.105e-163
Identity = 222/327 (67.89%), Postives = 267/327 (81.65%), Query Frame = 0
Match: A0A540NMZ5 (PKS_ER domain-containing protein {ECO:0000259|SMART:SM00829})
HSP 1 Score: 465.692 bits (1197), Expect = 1.105e-163
Identity = 222/327 (67.89%), Postives = 267/327 (81.65%), Query Frame = 0
Query: 2 MASKLMHVVQYSSYGKGAANLQHAEIPIPTPKKGEVLVKVEAVGINPIDYKIQGGFLRPFVPKKFPHVPGSDIAGEVVELGYGVTKFKKGDKIVAMLGSATGGGLAEYAVAKEEMTVIKPYEVSAVECAGLGTPALTAYQCLI-TAGVRLDKTGPPMNVLVTAASGGVGHYAVQLAKLGNTFVTATCGARNAAFVRSLGADEILDYKTPEGQALISPSGRKYDAVIHCSTGMSWSTFNNVLSLRGKVVDITPSPSALATFAMKKLSCSKKQLIPLLVSSKAEDLQFLVKLMKEKKLRTVVDSRYHLSKAEDAWAKCIEGHAVGKIIV 327
MASKLMH VQY+SYG GA+ L+H E P+P+PKKGEVL+K+EA +NP+D+KIQ G LRPF P+KFPH+P +D+AGEVVE+G GV KFK GDK+V L A GGGLAEY A E + V +P EVSA E AGL LTA+QCL +AG++LD +G N+L+TAASGGVG YAVQLAKLGNT VTATCGARN FV+SLGADE+LDYKTPEG AL SPSGRKYD V+HC+TG+ WSTF LS GKV+DITPSPSA ATFA+KKL+ SKKQL+PL ++ KAE+L++LVKL+KE KL+TV+DS Y LSKAEDAWA+ ++GHA GKIIV
Sbjct: 1 MASKLMHAVQYNSYGGGASALKHVEAPVPSPKKGEVLLKLEAAALNPVDWKIQKGMLRPFFPRKFPHIPVTDVAGEVVEVGQGVQKFKPGDKVVTFLSHANGGGLAEYTKASENLIVSRPSEVSAAEGAGLPIAGLTAHQCLTESAGIKLDGSGQQKNILITAASGGVGQYAVQLAKLGNTHVTATCGARNIEFVQSLGADEVLDYKTPEGAALTSPSGRKYDVVVHCATGIPWSTFEPNLSTNGKVIDITPSPSAFATFALKKLTFSKKQLVPLFLNVKAENLEYLVKLVKEGKLKTVIDSTYSLSKAEDAWARSMDGHATGKIIV 327
BLAST of XM_017386046.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5SKY3 ((chloroplast envelope quinone oxidoreductase homolog {ECO:0000313|RefSeq:XP_021814221.1}))
HSP 1 Score: 466.077 bits (1198), Expect = 3.790e-163
Identity = 223/326 (68.40%), Postives = 268/326 (82.21%), Query Frame = 0
Match: A0A6P5SKY3 ((chloroplast envelope quinone oxidoreductase homolog {ECO:0000313|RefSeq:XP_021814221.1}))
HSP 1 Score: 466.077 bits (1198), Expect = 3.790e-163
Identity = 223/326 (68.40%), Postives = 268/326 (82.21%), Query Frame = 0
Query: 3 ASKLMHVVQYSSYGKGAANLQHAEIPIPTPKKGEVLVKVEAVGINPIDYKIQGGFLRPFVPKKFPHVPGSDIAGEVVELGYGVTKFKKGDKIVAMLGSATGGGLAEYAVAKEEMTVIKPYEVSAVECAGLGTPALTAYQCLI-TAGVRLDKTGPPMNVLVTAASGGVGHYAVQLAKLGNTFVTATCGARNAAFVRSLGADEILDYKTPEGQALISPSGRKYDAVIHCSTGMSWSTFNNVLSLRGKVVDITPSPSALATFAMKKLSCSKKQLIPLLVSSKAEDLQFLVKLMKEKKLRTVVDSRYHLSKAEDAWAKCIEGHAVGKIIV 327
ASKL+H VQY SYG GA+ L+HAE+P+PTPKKGE+L+K+EA +NP+D+KIQ G RP +P+KFPH P +D+AGEV E+G GV KFK GDK+VA L +TGGGLAE+A A E +TV +P EVSA E AGL LTA+Q L AGV+LD TG N+L+TAASGGVG YAVQLAKLGNT VTATCGARN FV+SLGADE+LDYKTPEG AL SPSGRKYDAV+HCSTG+ WSTF LS GKV+D+TPSPSA ATFA+KKL+ SKKQL+PL +S+K+E+L +LVKL+KE KL+TV+DS++ LSKAEDAWAK I+GHA GKIIV
Sbjct: 45 ASKLIHAVQYDSYGGGASGLKHAEVPVPTPKKGEILLKLEAASLNPVDWKIQKGMFRPLMPRKFPHTPVTDVAGEVAEVGQGVQKFKPGDKVVAFLSHSTGGGLAEFAAASESLTVARPPEVSAAEGAGLPVAGLTAHQALTQAAGVKLDGTGQQKNILITAASGGVGQYAVQLAKLGNTHVTATCGARNIEFVKSLGADEVLDYKTPEGAALNSPSGRKYDAVVHCSTGIPWSTFEPNLSTNGKVIDLTPSPSAFATFALKKLTFSKKQLVPLFMSAKSENLDYLVKLVKEGKLKTVIDSKHPLSKAEDAWAKSIDGHATGKIIV 370
BLAST of XM_017386046.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5I8W3 ((Quinone-oxidoreductase-like protein {ECO:0000313|EMBL:KAB2636606.1}))
HSP 1 Score: 461.84 bits (1187), Expect = 3.834e-162
Identity = 219/327 (66.97%), Postives = 266/327 (81.35%), Query Frame = 0
Match: A0A5N5I8W3 ((Quinone-oxidoreductase-like protein {ECO:0000313|EMBL:KAB2636606.1}))
HSP 1 Score: 461.84 bits (1187), Expect = 3.834e-162
Identity = 219/327 (66.97%), Postives = 266/327 (81.35%), Query Frame = 0
Query: 2 MASKLMHVVQYSSYGKGAANLQHAEIPIPTPKKGEVLVKVEAVGINPIDYKIQGGFLRPFVPKKFPHVPGSDIAGEVVELGYGVTKFKKGDKIVAMLGSATGGGLAEYAVAKEEMTVIKPYEVSAVECAGLGTPALTAYQCLI-TAGVRLDKTGPPMNVLVTAASGGVGHYAVQLAKLGNTFVTATCGARNAAFVRSLGADEILDYKTPEGQALISPSGRKYDAVIHCSTGMSWSTFNNVLSLRGKVVDITPSPSALATFAMKKLSCSKKQLIPLLVSSKAEDLQFLVKLMKEKKLRTVVDSRYHLSKAEDAWAKCIEGHAVGKIIV 327
MASKLMH V+Y SYG GA+ L+H E P+P+PKKGEVL+K+EA +NP+D+KIQ G LRP P+KFPH+P +D+AGEVVE+G GV KFK GDK+VA L A GGGLAEYA A E +TV +P EVSA E AGL LTA+QCL +AG++LD +GP N+L+TAASGGVG YAVQLAKLGNT VTATCGARN FV+SLGADE+LDYKTPEG AL SPSGRKYDAV+HC+TG+ WSTF LS GKV+DITP P TFA+KKL+ SKKQL+PL ++ KAE+L++LVKL+KE KL+T++DS + LSKAEDAWA+ ++GHA GKIIV
Sbjct: 1 MASKLMHAVKYDSYGGGASALKHVEAPVPSPKKGEVLLKLEAAALNPVDWKIQKGMLRPLYPRKFPHIPVTDVAGEVVEVGQGVQKFKPGDKVVAFLSHANGGGLAEYAAASENLTVSRPPEVSAAEGAGLPVAGLTAHQCLTQSAGIKLDGSGPQKNLLITAASGGVGQYAVQLAKLGNTHVTATCGARNIEFVKSLGADEVLDYKTPEGAALTSPSGRKYDAVVHCTTGIPWSTFEPNLSTNGKVIDITPGPGTFVTFALKKLTFSKKQLVPLFLNVKAENLEYLVKLVKEGKLKTIIDSTHSLSKAEDAWARSMDGHATGKIIV 327
BLAST of XM_017386046.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5E4EL54 ((Full=PREDICTED: putative quinone-oxidoreductase {ECO:0000313|EMBL:VVA15760.1}))
HSP 1 Score: 461.84 bits (1187), Expect = 4.824e-162
Identity = 219/327 (66.97%), Postives = 267/327 (81.65%), Query Frame = 0
Match: A0A5E4EL54 ((Full=PREDICTED: putative quinone-oxidoreductase {ECO:0000313|EMBL:VVA15760.1}))
HSP 1 Score: 461.84 bits (1187), Expect = 4.824e-162
Identity = 219/327 (66.97%), Postives = 267/327 (81.65%), Query Frame = 0
Query: 2 MASKLMHVVQYSSYGKGAANLQHAEIPIPTPKKGEVLVKVEAVGINPIDYKIQGGFLRPFVPKKFPHVPGSDIAGEVVELGYGVTKFKKGDKIVAMLGSATGGGLAEYAVAKEEMTVIKPYEVSAVECAGLGTPALTAYQCLI-TAGVRLDKTGPPMNVLVTAASGGVGHYAVQLAKLGNTFVTATCGARNAAFVRSLGADEILDYKTPEGQALISPSGRKYDAVIHCSTGMSWSTFNNVLSLRGKVVDITPSPSALATFAMKKLSCSKKQLIPLLVSSKAEDLQFLVKLMKEKKLRTVVDSRYHLSKAEDAWAKCIEGHAVGKIIV 327
MASKLMH VQY SYG GA+ L+HAE+P+PTPKKG++L+K+EA +NP+D+KIQ G RP +P+KFPH+P +D+AGEVVE+G GV KFK GDK+VA L GGGLAE+A A E +TV +P EVSA E AGL LTA+Q L AGV+LD +G N+L+TAASGGVG YAVQLAKLGNT VTATC ARN FV+SLGADE+LDYKTPEG AL SPSGRKYDAV+HC+TG+ WSTF LS GKV+D+TPSPSA ATF +KKL+ SKKQL+PL +S+K+E+L +LVKL+KE+KL+TV+DS++ LSKAED WAK I+GHA GKIIV
Sbjct: 1 MASKLMHAVQYDSYGGGASGLKHAEVPVPTPKKGDILLKLEAASLNPVDWKIQKGMFRPLLPRKFPHIPVTDVAGEVVEVGQGVQKFKPGDKVVAFLTHTNGGGLAEFAAASESLTVARPPEVSAAEGAGLPVAGLTAHQALTQAAGVKLDGSGQQKNILITAASGGVGQYAVQLAKLGNTHVTATCSARNIEFVKSLGADEVLDYKTPEGAALNSPSGRKYDAVVHCATGIPWSTFEPNLSANGKVIDLTPSPSAFATFVLKKLTFSKKQLVPLFMSAKSENLDYLVKLVKEEKLKTVIDSKHPLSKAEDGWAKSIDGHATGKIIV 327
| Match Name | Stats | Description |
|---|---|---|
| A0A5N5IBH2 | E-Value: 7.845e-166, PID: 71.04 | (Quinone-oxidoreductase-like protein {ECO:0000313|... [more] |
| A0A5N5GLX7 | E-Value: 1.157e-165, PID: 71.25 | (Quinone-oxidoreductase-like protein {ECO:0000313|... [more] |
| A0A2P6PU21 | E-Value: 1.752e-164, PID: 70.03 | (Putative NADPH:quinone reductase {ECO:0000313|EMB... [more] |
| A0A2P5CE67 | E-Value: 2.757e-164, PID: 68.50 | (Alcohol dehydrogenase superfamily, zinc-type {ECO... [more] |
| A0A540NMZ2 | E-Value: 6.221e-164, PID: 70.34 | PKS_ER domain-containing protein {ECO:0000259|SMAR... [more] |
| A0A314ZIG2 | E-Value: 8.973e-164, PID: 68.20 | (Putative quinone-oxidoreductase homolog chloropla... [more] |
| A0A540NMZ5 | E-Value: 1.105e-163, PID: 67.89 | PKS_ER domain-containing protein {ECO:0000259|SMAR... [more] |
| A0A6P5SKY3 | E-Value: 3.790e-163, PID: 68.40 | (chloroplast envelope quinone oxidoreductase homol... [more] |
| A0A5N5I8W3 | E-Value: 3.834e-162, PID: 66.97 | (Quinone-oxidoreductase-like protein {ECO:0000313|... [more] |
| A0A5E4EL54 | E-Value: 4.824e-162, PID: 66.97 | (Full=PREDICTED: putative quinone-oxidoreductase {... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |