Resource Type:
Polypeptide
Name:
XM_017383437.1
Identifier:
XM_017383437.1-protein
Sequence:
MDSSSCPSNAIPVVSTFTSPFETCDDQKKPLSLWPGMYHSPVTNALWEAR
SSIFERLLDFSVDAPPQSQLLTRTPSQSRTAILYNFSSDYILREQYRDPW
NEVRIGKLLEDLDALAGTISVKHCSDDDHMTRPLLLVTASVDKMVLKKSI
SVDIDLKISGAVIWVGRSSIEIQLEVTQLTNGSTDTFNSVALMANFIFVA
RDSKTGKAAPVNRLSPETKEETLLYEEAEARNELRKQKRGGDKRDIENGN
RLEALLGEGRIFSDMPALADRDSILLRDTRLENSLICQPQQRNIHGRIFG
GFLMHRAFELAFSTAYVFAGMMPCFLEVDHVDFLRPVSITKPN
Sequence Length:
343
Sequence Checksum:
08eed3aae446d834f31d6b60a9a431d9
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017383437.1, derives from mRNA, XM_017383437.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017383437.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017383437.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C7D6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA75293.1}))
HSP 1 Score: 595.89 bits (1535), Expect = 0.000e+0
Identity = 288/344 (83.72%), Postives = 309/344 (89.83%), Query Frame = 0
Match: A0A5B7C7D6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA75293.1}))
HSP 1 Score: 595.89 bits (1535), Expect = 0.000e+0
Identity = 288/344 (83.72%), Postives = 309/344 (89.83%), Query Frame = 0
Query: 1 MDSSSCPSNAIPVVSTFTSPFET---CDDQKKPLSLWPGMYHSPVTNALWEARSSIFERLLDFSVDAPPQSQLLTRTPSQSRTAILYNFSSDYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDHMTRPLLLVTASVDKMVLKKSISVDIDLKISGAVIWVGRSSIEIQLEVTQLTNGSTDTFNSVALMANFIFVARDSKTGKAAPVNRLSPETKEETLLYEEAEARNELRKQKRGGDKRDIENG--NRLEALLGEGRIFSDMPALADRDSILLRDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYVFAGMMPCFLEVDHVDFLRPVSI 339
MDS+S PSN IP+ STFTSPFE + +KPLSLWPGMYHSPVTNALWE RS IFERLLD VDAPPQS+LLT+TPSQSRT ILYNFS+DYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDD MTRPLLLVTASVDKMVLKK ISVD+DLK++GAVIWVGRSSIEIQLEV Q TN ++D S+AL ANFIFVARDS TGKAAPVNRLSPET++E LLYEEAEARN+LRK KRG D+++ ENG NRLEALL EGRIF DMPALADR+SILLRDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAY FAGMMPCFLEVDHVDFLRPV +
Sbjct: 1 MDSNSSPSNTIPIFSTFTSPFENSPKAEAARKPLSLWPGMYHSPVTNALWETRSKIFERLLDPPVDAPPQSELLTKTPSQSRTTILYNFSTDYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKMVLKKPISVDVDLKMAGAVIWVGRSSIEIQLEVIQSTNENSDASKSIALTANFIFVARDSMTGKAAPVNRLSPETEQEKLLYEEAEARNKLRKMKRGYDRKEFENGEVNRLEALLAEGRIFCDMPALADRNSILLRDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYAFAGMMPCFLEVDHVDFLRPVDV 344
BLAST of XM_017383437.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0GRD5 ((Thioesterase/thiol ester dehydrase-isomerase superfamily protein {ECO:0000313|EMBL:GFZ13367.1}))
HSP 1 Score: 583.563 bits (1503), Expect = 0.000e+0
Identity = 287/344 (83.43%), Postives = 305/344 (88.66%), Query Frame = 0
Match: A0A7J0GRD5 ((Thioesterase/thiol ester dehydrase-isomerase superfamily protein {ECO:0000313|EMBL:GFZ13367.1}))
HSP 1 Score: 583.563 bits (1503), Expect = 0.000e+0
Identity = 287/344 (83.43%), Postives = 305/344 (88.66%), Query Frame = 0
Query: 1 MDSSSCPSNAIPVVSTFTSPFE---TCDDQKKPLSLWPGMYHSPVTNALWEARSSIFERLLDFSVDAPPQSQLLTRTPSQSRTAILYNFSSDYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDHMTRPLLLVTASVDKMVLKKSISVDIDLKISGAVIWVGRSSIEIQLEVTQLTNGSTDTFNSVALMANFIFVARDSKTGKAAPVNRLSPETKEETLLYEEAEARNELRKQKRGGDKRDIENG--NRLEALLGEGRIFSDMPALADRDSILLRDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYVFAGMMPCFLEVDHVDFLRPVSI 339
MDS+S PSN IPV STFTSPFE D +KPLSLWPGMYHSPVTNALWEARS IFER+LD VDAPPQSQLLTRTPSQSRT ILYNFS DYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDD MTRPLLLVTASVD+MVLK+ ISVDIDLK+ GAVIWVGRSSIEIQLEVTQ T S+D +AL ANFIFVARDSKTGKAAPVNR+SPET E LLYEEAEAR+ LRK+K G D+++IEN NRLEALL EGRIF DMPALADR++ILLRDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAY FAGMMPCFLEVDHVDFL+PV +
Sbjct: 1 MDSNSSPSNTIPVGSTFTSPFEGSPRADSARKPLSLWPGMYHSPVTNALWEARSKIFERMLDPPVDAPPQSQLLTRTPSQSRTTILYNFSIDYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDRMVLKRPISVDIDLKMVGAVIWVGRSSIEIQLEVTQPTIESSDASEPIALTANFIFVARDSKTGKAAPVNRISPETDREKLLYEEAEARSNLRKRKGGYDRKEIENREVNRLEALLTEGRIFCDMPALADRNTILLRDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYAFAGMMPCFLEVDHVDFLKPVDV 344
BLAST of XM_017383437.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0FNF5 ((Thioesterase/thiol ester dehydrase-isomerase superfamily protein {ECO:0000313|EMBL:GFY99457.1}))
HSP 1 Score: 583.563 bits (1503), Expect = 0.000e+0
Identity = 286/344 (83.14%), Postives = 305/344 (88.66%), Query Frame = 0
Match: A0A7J0FNF5 ((Thioesterase/thiol ester dehydrase-isomerase superfamily protein {ECO:0000313|EMBL:GFY99457.1}))
HSP 1 Score: 583.563 bits (1503), Expect = 0.000e+0
Identity = 286/344 (83.14%), Postives = 305/344 (88.66%), Query Frame = 0
Query: 1 MDSSSCPSNAIPVVSTFTSPFET---CDDQKKPLSLWPGMYHSPVTNALWEARSSIFERLLDFSVDAPPQSQLLTRTPSQSRTAILYNFSSDYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDHMTRPLLLVTASVDKMVLKKSISVDIDLKISGAVIWVGRSSIEIQLEVTQLTNGSTDTFNSVALMANFIFVARDSKTGKAAPVNRLSPETKEETLLYEEAEARNELRKQKRGGDKRDIENG--NRLEALLGEGRIFSDMPALADRDSILLRDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYVFAGMMPCFLEVDHVDFLRPVSI 339
MDS+S PSN IPV STFTSPFE D +KPLSLWPGMYHSPVTNALWEARS IFERLLD VDAPPQSQ LT+ PSQSRT ILYNFS+DYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDD MTRPLLLVTASVDKMVLK+ ISVD+DLK+ GAVIW+GRSSIEIQLEVTQ T S+D +AL ANFIFVARDSKTGKAAPVNRL PET +E LLYEEAEAR+ LRK+K G D+++IENG NRLEALL EGRIF DMPALADR++ILLRDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAY FAGMMPCFLEVDHVDFLRPV +
Sbjct: 1 MDSNSSPSNTIPVGSTFTSPFEGSPRADSARKPLSLWPGMYHSPVTNALWEARSQIFERLLDPPVDAPPQSQFLTKIPSQSRTTILYNFSTDYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKMVLKRPISVDVDLKMVGAVIWLGRSSIEIQLEVTQPTIESSDASELIALTANFIFVARDSKTGKAAPVNRLCPETDQEKLLYEEAEARSNLRKRKGGYDRKEIENGEVNRLEALLAEGRIFCDMPALADRNTILLRDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYAFAGMMPCFLEVDHVDFLRPVDV 344
BLAST of XM_017383437.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PPM6 ((Acyl-coenzyme A thioesterase {ECO:0000313|EMBL:PSR94982.1}))
HSP 1 Score: 582.408 bits (1500), Expect = 0.000e+0
Identity = 286/344 (83.14%), Postives = 305/344 (88.66%), Query Frame = 0
Match: A0A2R6PPM6 ((Acyl-coenzyme A thioesterase {ECO:0000313|EMBL:PSR94982.1}))
HSP 1 Score: 582.408 bits (1500), Expect = 0.000e+0
Identity = 286/344 (83.14%), Postives = 305/344 (88.66%), Query Frame = 0
Query: 1 MDSSSCPSNAIPVVSTFTSPFET---CDDQKKPLSLWPGMYHSPVTNALWEARSSIFERLLDFSVDAPPQSQLLTRTPSQSRTAILYNFSSDYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDHMTRPLLLVTASVDKMVLKKSISVDIDLKISGAVIWVGRSSIEIQLEVTQLTNGSTDTFNSVALMANFIFVARDSKTGKAAPVNRLSPETKEETLLYEEAEARNELRKQKRGGDKRDIENG--NRLEALLGEGRIFSDMPALADRDSILLRDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYVFAGMMPCFLEVDHVDFLRPVSI 339
MDS+S PSN IPV STFTSPFE D +KPLSLWPGMYHSPVTNALWEARS IFER+LD VDAPPQSQLLT+TPSQSRT ILYNFS DYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDD MTRPLLLVTASVD+MVLK+ ISVDIDLK+ GAVIWVGRSSIEIQLEVTQ T S+D +AL ANFIFVARDSKTGKAAPVNR+SPET E LLYEEAEAR+ LRK+K G D+++IEN NRLEALL EGRIF DMPALADR++ILLRDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAY FAGMMPCFLEVDHVDFL+PV +
Sbjct: 1 MDSNSSPSNTIPVGSTFTSPFECSPRADSARKPLSLWPGMYHSPVTNALWEARSKIFERMLDPPVDAPPQSQLLTKTPSQSRTTILYNFSIDYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDRMVLKRPISVDIDLKMVGAVIWVGRSSIEIQLEVTQPTIESSDASEPIALTANFIFVARDSKTGKAAPVNRISPETDREKLLYEEAEARSNLRKRKGGYDRKEIENREVNRLEALLTEGRIFCDMPALADRNTILLRDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYAFAGMMPCFLEVDHVDFLKPVDV 344
BLAST of XM_017383437.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4M656 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9463714.1}) (Fragment))
HSP 1 Score: 578.556 bits (1490), Expect = 0.000e+0
Identity = 284/345 (82.32%), Postives = 309/345 (89.57%), Query Frame = 0
Match: A0A6A4M656 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9463714.1}) (Fragment))
HSP 1 Score: 578.556 bits (1490), Expect = 0.000e+0
Identity = 284/345 (82.32%), Postives = 309/345 (89.57%), Query Frame = 0
Query: 1 MDSSSCPSNAIPVVSTFTSPFETC----DDQKKPLSLWPGMYHSPVTNALWEARSSIFERLLDFSVDAPPQSQLLTRTPSQSRTAILYNFSSDYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDHMTRPLLLVTASVDKMVLKKSISVDIDLKISGAVIWVGRSSIEIQLEVTQLTNGSTDTFNSVALMANFIFVARDSKTGKAAPVNRLSPETKEETLLYEEAEARNELRKQKRGGDKRDIENG--NRLEALLGEGRIFSDMPALADRDSILLRDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYVFAGMMPCFLEVDHVDFLRPVSI 339
MDS+S + IPV STFTSPFE D +KPLSLWPGMYHSPVTNALWEARS IFER+LD +VDAPPQSQLLTRTPSQSRT+ILYNFS+DY+LREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSD+D MTRPLLLVTA+VDKMVLKK ISVD+DLK+ GAVIWVGRSSIEIQLEVTQ TN +D +AL ANFIFVARDSKTGKAAPVNRL+PET++E LL EEAEAR+ELRK+KRG +++IENG NRLEALL EGRIF DMPALADRD+ILLRDTRLE+SLICQPQQRNIHGRIFGGFLMHRAFELAFSTAY FAGMMPCFLEVDHVDFLRPV +
Sbjct: 17 MDSNS---SFIPVASTFTSPFEGSPRPEDPARKPLSLWPGMYHSPVTNALWEARSRIFERMLDPNVDAPPQSQLLTRTPSQSRTSILYNFSTDYVLREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDEDSMTRPLLLVTAAVDKMVLKKPISVDVDLKMVGAVIWVGRSSIEIQLEVTQPTNECSDASEPIALTANFIFVARDSKTGKAAPVNRLTPETEQEKLLCEEAEARHELRKRKRGNYRKEIENGEVNRLEALLAEGRIFCDMPALADRDTILLRDTRLEHSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYAFAGMMPCFLEVDHVDFLRPVDV 358
BLAST of XM_017383437.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C5L2 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8550509.1}))
HSP 1 Score: 577.015 bits (1486), Expect = 0.000e+0
Identity = 281/344 (81.69%), Postives = 303/344 (88.08%), Query Frame = 0
Match: A0A5J5C5L2 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8550509.1}))
HSP 1 Score: 577.015 bits (1486), Expect = 0.000e+0
Identity = 281/344 (81.69%), Postives = 303/344 (88.08%), Query Frame = 0
Query: 1 MDSSSCPSNAIPVVSTFTSPFET---CDDQKKPLSLWPGMYHSPVTNALWEARSSIFERLLDFSVDAPPQSQLLTRTPSQSRTAILYNFSSDYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDHMTRPLLLVTASVDKMVLKKSISVDIDLKISGAVIWVGRSSIEIQLEVTQLTNGSTDTFNSVALMANFIFVARDSKTGKAAPVNRLSPETKEETLLYEEAEARNELRKQKRGGDKRDIENG--NRLEALLGEGRIFSDMPALADRDSILLRDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYVFAGMMPCFLEVDHVDFLRPVSI 339
M S+S PS+ IP+ STFTSPFE D +KPLSLWPGMYHSPVTNALWE RS IFERLLD +DAPPQS+LLT+TPSQSRT ILYNFS+DYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDD MTRPLLLVTASVDKMVLKK ISVD+DLK+ G VIWVG+SSIEIQLEV Q TN S+DT S+AL ANFIFVARDSKT KAAPVNRL PET++E LLYEEAE RN+LRK K+G +++ ENG NRLEALL EGRIF DMPALADR+SILLRDT LENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAY FAGMMPCFLEVDHVDFLRPV +
Sbjct: 1 MGSNSSPSSTIPIFSTFTSPFENSPRADAARKPLSLWPGMYHSPVTNALWETRSKIFERLLDPPIDAPPQSELLTKTPSQSRTTILYNFSTDYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKMVLKKPISVDVDLKMVGEVIWVGQSSIEIQLEVIQSTNESSDTSKSIALTANFIFVARDSKTRKAAPVNRLLPETEQEKLLYEEAEERNKLRKMKKGDGRKEFENGEVNRLEALLAEGRIFCDMPALADRNSILLRDTCLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYAFAGMMPCFLEVDHVDFLRPVDV 344
BLAST of XM_017383437.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6WIM3 ((acyl-coenzyme A thioesterase 9, mitochondrial-like {ECO:0000313|RefSeq:XP_027092080.1, ECO:0000313|RefSeq:XP_027113617.1}))
HSP 1 Score: 576.244 bits (1484), Expect = 0.000e+0
Identity = 284/348 (81.61%), Postives = 306/348 (87.93%), Query Frame = 0
Match: A0A6P6WIM3 ((acyl-coenzyme A thioesterase 9, mitochondrial-like {ECO:0000313|RefSeq:XP_027092080.1, ECO:0000313|RefSeq:XP_027113617.1}))
HSP 1 Score: 576.244 bits (1484), Expect = 0.000e+0
Identity = 284/348 (81.61%), Postives = 306/348 (87.93%), Query Frame = 0
Query: 1 MDSSSCPSNAIPVVSTFTSPFETCDDQ-------KKPLSLWPGMYHSPVTNALWEARSSIFERLLDFSVDAPPQSQLLTRTPSQSRTAILYNFSSDYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDHMTRPLLLVTASVDKMVLKKSISVDIDLKISGAVIWVGRSSIEIQLEVTQLTNGSTDTFNSVALMANFIFVARDSKTGKAAPVNRLSPETKEETLLYEEAEARNELRKQKRGGDKRDIENG--NRLEALLGEGRIFSDMPALADRDSILLRDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYVFAGMMPCFLEVDHVDFLRPVSI 339
MD SS PS IP+VST TSPFE + +KPLSLWPGMYHSPVTNALWE RS IFERLLD +DAPPQS+LLTRTPS SRTAILYNFS+DYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHC+DDD MTRPLLLVTASVDKMVLKK ISVDIDLK++GAVIWVGRSSIEIQLEVTQ T+G +D SVAL ANFIFVARD KT KAA VNRLSPET++E +LYE AEARN+LRK+KR D+++I+NG RLEALLGEGRIF DMPALADRDSILLRDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAY FAG+MPCFLEVDHVDFLRPV +
Sbjct: 1 MDLSSSPSLTIPIVSTLTSPFEGSPKENDPKSLTRKPLSLWPGMYHSPVTNALWETRSKIFERLLDPPLDAPPQSELLTRTPSYSRTAILYNFSTDYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCTDDDSMTRPLLLVTASVDKMVLKKPISVDIDLKMAGAVIWVGRSSIEIQLEVTQPTDGKSDAAESVALTANFIFVARDYKTRKAALVNRLSPETEKEKMLYEAAEARNQLRKRKRVVDRKEIQNGEFGRLEALLGEGRIFCDMPALADRDSILLRDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYAFAGVMPCFLEVDHVDFLRPVDV 348
BLAST of XM_017383437.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HR28 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5954506.1}))
HSP 1 Score: 569.696 bits (1467), Expect = 0.000e+0
Identity = 280/338 (82.84%), Postives = 304/338 (89.94%), Query Frame = 0
Match: A0A7J7HR28 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5954506.1}))
HSP 1 Score: 569.696 bits (1467), Expect = 0.000e+0
Identity = 280/338 (82.84%), Postives = 304/338 (89.94%), Query Frame = 0
Query: 9 NAIPVVSTFTSPFETC----DDQKKPLSLWPGMYHSPVTNALWEARSSIFERLLDFSVDAPPQSQLLTRTPSQSRTAILYNFSSDYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDHMTRPLLLVTASVDKMVLKKSISVDIDLKISGAVIWVGRSSIEIQLEVTQLTN-GSTDTFNSVALMANFIFVARDSKTGKAAPVNRLSPETKEETLLYEEAEARNELRKQKRGGDKRDIENG--NRLEALLGEGRIFSDMPALADRDSILLRDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYVFAGMMPCFLEVDHVDFLRPVSI 339
N IPV ST TSPFE+ D +KPLSLWPGMYHSPVTNALWEARS+IFE LLD VDAPPQSQLLT+TP QSRT ILYNFS+DYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDD MTRPLLLVTASVDKMVLKK ISVD+DLK+ GAVIWVGRSSIEIQLEVTQ TN S+D S+AL ANFIFVARDSKTGKAAPVNRLSPET++E LLYEEAEAR +L+K+KRG D+++IENG +RL++LL EGRIF DMPALADR++ILLRDTRLENSLIC PQQRNIHGRIFGGFLMHRAFELAFSTAYVFAGMMPCFLEVDHVDFL+PV +
Sbjct: 88 NTIPVFSTLTSPFESSPHADDVPRKPLSLWPGMYHSPVTNALWEARSNIFEILLDPPVDAPPQSQLLTKTPFQSRTTILYNFSTDYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKMVLKKPISVDVDLKMVGAVIWVGRSSIEIQLEVTQPTNEESSDALESIALTANFIFVARDSKTGKAAPVNRLSPETEQEKLLYEEAEAR-KLKKRKRGDDRKEIENGEVDRLKSLLAEGRIFCDMPALADRNTILLRDTRLENSLICHPQQRNIHGRIFGGFLMHRAFELAFSTAYVFAGMMPCFLEVDHVDFLKPVDV 424
BLAST of XM_017383437.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834HHW7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7154771.1}))
HSP 1 Score: 568.926 bits (1465), Expect = 0.000e+0
Identity = 286/357 (80.11%), Postives = 306/357 (85.71%), Query Frame = 0
Match: A0A834HHW7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7154771.1}))
HSP 1 Score: 568.926 bits (1465), Expect = 0.000e+0
Identity = 286/357 (80.11%), Postives = 306/357 (85.71%), Query Frame = 0
Query: 1 MDSSSCPSNAIPVVSTFTSPFETC----DDQKKPLSLWPGMYHSPVTNALWEARSSIFERLLDFSVDAPPQSQLLTRTPSQSRTAILYNFSSDYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDHMTRPLLLVTASVDKMVLKKSISVDIDLKISGAVIWVGRSSIEIQLEVTQLTNG------------STDTFNSVALMANFIFVARDSKTGKAAPVNRLSPETKEETLLYEEAEARNELRKQKRGGDKRDIENG--NRLEALLGEGRIFSDMPALADRDSILLRDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYVFAGMMPCFLEVDHVDFLRPVSI 339
MDS+S + IPV STFTSPFE D +KPLSLWPGMYHSPVTNALWEARS IFERLLD +VDAPPQSQLLTRTPSQSRT ILYNFS+DY+LREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSD+D MTRPLLLVTA+VDKMVLKK ISVD+DLK+ GAVIWVGRSSIEIQLEVTQ TN +D VAL ANFIFVARDSKTGKAAPVNRL+PET+ E LL EEAEAR+ELRK+KRG ++IENG NRLEALL EGRIF DMPALADRD+ILLRDTRLE+SLICQPQQRNIHGRIFGGFLMHRAFELAFSTAY FAGMMPCFLEVDHVDFLRPV +
Sbjct: 1 MDSNS---SFIPVASTFTSPFEDSPRPEDPARKPLSLWPGMYHSPVTNALWEARSRIFERLLDPNVDAPPQSQLLTRTPSQSRTTILYNFSTDYVLREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDEDSMTRPLLLVTAAVDKMVLKKPISVDVDLKMVGAVIWVGRSSIEIQLEVTQPTNARVMAFEDDTCQECSDASEPVALTANFIFVARDSKTGKAAPVNRLAPETEREKLLCEEAEARHELRKRKRGNFPKEIENGEVNRLEALLAEGRIFCDMPALADRDTILLRDTRLEHSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYAFAGMMPCFLEVDHVDFLRPVDV 354
BLAST of XM_017383437.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A660KNU2 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8038062.1}))
HSP 1 Score: 564.688 bits (1454), Expect = 0.000e+0
Identity = 280/352 (79.55%), Postives = 300/352 (85.23%), Query Frame = 0
Match: A0A660KNU2 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8038062.1}))
HSP 1 Score: 564.688 bits (1454), Expect = 0.000e+0
Identity = 280/352 (79.55%), Postives = 300/352 (85.23%), Query Frame = 0
Query: 1 MDSSSCPS-NAIPVVSTFTSPFET----------CDDQKKPLSLWPGMYHSPVTNALWEARSSIFERLLDFSVDAPPQSQLLTRTPSQSRTAILYNFSSDYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDHMTRPLLLVTASVDKMVLKKSISVDIDLKISGAVIWVGRSSIEIQLEVTQLTNGSTDTFNSVALMANFIFVARDSKTGKAAPVNRLSPETKEETLLYEEAEARNELRKQKRGGDKRDIENG--NRLEALLGEGRIFSDMPALADRDSILLRDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYVFAGMMPCFLEVDHVDFLRPVSI 339
MD +S PS N IPVVST+ SPFE+ +KPLSLWPGMY SPVTNALWEARSSIFERLLD DAPPQS+LLT+TPSQSRT I Y FSSDYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDD TRPLLLVTASVDK+VLKK ISVDIDLKI G+VIWVGRSSIEIQL+V Q T +D +S AL ANFIFVARDSKTGKAAPVNRLSPET+ E LYE+AE R+ LRK+KRGGD+++ ENG NRLE LL EGRIF DMPALADRDSILLRDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAY FAGM+PCFLEVDHVDFLRPV +
Sbjct: 1 MDLNSSPSSNTIPVVSTYASPFESPSPPLNNDANSSKGRKPLSLWPGMYQSPVTNALWEARSSIFERLLDPPKDAPPQSELLTKTPSQSRTTIFYGFSSDYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSTTRPLLLVTASVDKIVLKKPISVDIDLKIVGSVIWVGRSSIEIQLDVAQSTEEGSDVSDSAALTANFIFVARDSKTGKAAPVNRLSPETEREKFLYEKAEERSNLRKRKRGGDRKEFENGGVNRLETLLAEGRIFCDMPALADRDSILLRDTRLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYAFAGMVPCFLEVDHVDFLRPVDV 352
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7C7D6 | E-Value: 0.000e+0, PID: 83.72 | (Uncharacterized protein {ECO:0000313|EMBL:MPA7529... [more] |
| A0A7J0GRD5 | E-Value: 0.000e+0, PID: 83.43 | (Thioesterase/thiol ester dehydrase-isomerase supe... [more] |
| A0A7J0FNF5 | E-Value: 0.000e+0, PID: 83.14 | (Thioesterase/thiol ester dehydrase-isomerase supe... [more] |
| A0A2R6PPM6 | E-Value: 0.000e+0, PID: 83.14 | (Acyl-coenzyme A thioesterase {ECO:0000313|EMBL:PS... [more] |
| A0A6A4M656 | E-Value: 0.000e+0, PID: 82.32 | (Uncharacterized protein {ECO:0000313|EMBL:KAE9463... [more] |
| A0A5J5C5L2 | E-Value: 0.000e+0, PID: 81.69 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8550... [more] |
| A0A6P6WIM3 | E-Value: 0.000e+0, PID: 81.61 | (acyl-coenzyme A thioesterase 9, mitochondrial-lik... [more] |
| A0A7J7HR28 | E-Value: 0.000e+0, PID: 82.84 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5954... [more] |
| A0A834HHW7 | E-Value: 0.000e+0, PID: 80.11 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7154... [more] |
| A0A660KNU2 | E-Value: 0.000e+0, PID: 79.55 | (Uncharacterized protein {ECO:0000313|EMBL:KAE8038... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |