XM_017392301.1 | CarrotOmics

Resource Type:

Polypeptide

Name:

XM_017392301.1

Identifier:

XM_017392301.1-protein

Sequence:

MLYSCALTSHLLLSPNTLSSPPTFHTFRSKCQVNRRGFSLRGLLVTGASA
MPSSLIAQPHQGLERLPFKPEGYNFWNWRGHKIHYVEQGEGFPIVLIHGF
GASAYHWRYNIPELSKRYKVYAIDLLGFGWSEKALVDYDALIWRDEIVDF
LKVIVKEPAVVVGNSLGGFTALLTAEALPEQIVGVALLNSAGQFGNPIDE
TVEPTELSFGSTVLAPVKDIFQRVVLGFLFWQAKQPARIESVLKSVYKNT
TNVDDYLVESILQPATDPNAGEVYYRLMTRFMSNQRKYTLDSVLGNLSCP
LLLLWGDLDPWVGPAKAISIKEFYPKTSIVNLQAGHCPHDEVPELVNKGL
IDWMSSLQFTSPVML

Sequence Length:

365

Sequence Checksum:

821136bc41e8e2cd10e315362c9b6e8c

View location in JBrowse:

DCARv2_Chr4:933102..945012+

Organism:

Daucus carota subspecies sativus

Relationship:

There is 1 relationship.
Relationships
The polypeptide, XM_017392301.1, derives from mRNA, XM_017392301.1.

Blast Results:

The following BLAST results are available for this feature:

BLAST of XM_017392301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR

BLAST of XM_017392301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10

[Close]

BLAST of XM_017392301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6S2I4 ((Pheophytinase {ECO:0000313|EMBL:PSS36487.1}))

HSP 1 Score: 580.096 bits (1494), Expect = 0.000e+0
Identity = 273/369 (73.98%), Postives = 311/369 (84.28%), Query Frame = 0

Query:    1 MLYSCALTSHL----LLSP--NTLSSPPTFHTFRSKCQVNRRGFSLRGLLVTGASAMPSSLIAQPHQGLERLPFKPEGYNFWNWRGHKIHYVEQGEGFPIVLIHGFGASAYHWRYNIPELSKRYKVYAIDLLGFGWSEKALVDYDALIWRDEIVDFLKVIVKEPAVVVGNSLGGFTALLTAEALPEQIVGVALLNSAGQFGNPIDETVEPTELSFGSTVLAPVKDIFQRVVLGFLFWQAKQPARIESVLKSVYKNTTNVDDYLVESILQPATDPNAGEVYYRLMTRFMSNQRKYTLDSVLGNLSCPLLLLWGDLDPWVGPAKAISIKEFYPKTSIVNLQAGHCPHDEVPELVNKGLIDWMSSLQFTSPV 363
            M+ SCA  SH     LLS   N   +P   H +RSKC +NRRGF+++G++  GAS +PSSL+A+P QGLERLPFK EGYNFW WRGHKIHYV+QGEGFPIVLIHGFGASA+HWRYNIPEL+K+YKVYA+DLLGFGWS+KAL++YDAL+WRD+I DFLK IVKEPA++VGNSLGGFTAL++A  LPEQ+VGVALLNSAGQFGN   ET E  E      +L P+K +FQRVVLGFLFWQAKQPAR++SVLKSVY N +NVDDYLVESI +PA DPNAGEVYYRLMTRFMSNQ KYTLDSVL  LSCPLLL+WGDLDPWVGPAKAI IKEFYP TSIVNLQAGHCPHDEVPEL NK L+DW+S+L   S V
Sbjct:    1 MMPSCATASHTSRPDLLSSVGNRFITPAKIHHYRSKCDLNRRGFAMKGIVAAGASVIPSSLVAEPVQGLERLPFKAEGYNFWTWRGHKIHYVQQGEGFPIVLIHGFGASAFHWRYNIPELAKKYKVYAVDLLGFGWSDKALIEYDALVWRDQIEDFLKEIVKEPAILVGNSLGGFTALVSASGLPEQVVGVALLNSAGQFGNAKAETTESEETVLQKFILNPLKTVFQRVVLGFLFWQAKQPARVKSVLKSVYINASNVDDYLVESITRPADDPNAGEVYYRLMTRFMSNQTKYTLDSVLSKLSCPLLLVWGDLDPWVGPAKAIRIKEFYPNTSIVNLQAGHCPHDEVPELANKALLDWLSTLPSASTV 369

[Close]

BLAST of XM_017392301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251T894 ((Putative alpha/beta-Hydrolases superfamily protein {ECO:0000313|EMBL:OTG07003.1}))

HSP 1 Score: 575.474 bits (1482), Expect = 0.000e+0
Identity = 258/351 (73.50%), Postives = 305/351 (86.89%), Query Frame = 0

Query:   10 HLLLSPNTLSSPPTFHTFRSKCQVNRRGFSLRGLLVTGASAMPSSLIAQPHQGLERLPFKPEGYNFWNWRGHKIHYVEQGEGFPIVLIHGFGASAYHWRYNIPELSKRYKVYAIDLLGFGWSEKALVDYDALIWRDEIVDFLKVIVKEPAVVVGNSLGGFTALLTAEALPEQIVGVALLNSAGQFGNPIDETVEPTELSFGSTVLAPVKDIFQRVVLGFLFWQAKQPARIESVLKSVYKNTTNVDDYLVESILQPATDPNAGEVYYRLMTRFMSNQRKYTLDSVLGNLSCPLLLLWGDLDPWVGPAKAISIKEFYPKTSIVNLQAGHCPHDEVPELVNKGLIDWMSSLQFT 360
            H L + N  S     H +R++C ++RR F+ +G++  GAS MPS+L++QP QGLERLPFK +GY FW WRGHKIHYVE+GEGFPIVLIHGFGASA+HWRYNIPEL+K+YKVYA+DLLGFGWSEKAL+DYDAL+WRD++ DFLK IVKEP ++VGNSLGGFTAL+ AEA+P+Q+VG+ALLNSAGQFG+P D T+E  E +    +L P+K+IFQRV LGFLFWQAKQPAR+ESVLKSVYKNT+NVDDYL++SI +PA DPNAGEVYYRLMTRFMSNQRKYTLDSVL  LSCPLLL+WGDLDPWVGPAKA  IKEFYP T++VNLQAGHCPHDEVPELVNK L+DW+S+L  T
Sbjct:   13 HRLRTENKFSPAIKVHPYRNRCGLSRRDFASKGIVAAGASVMPSTLVSQPAQGLERLPFKKDGYKFWTWRGHKIHYVEEGEGFPIVLIHGFGASAFHWRYNIPELAKKYKVYAVDLLGFGWSEKALIDYDALVWRDQVADFLKEIVKEPTILVGNSLGGFTALVAAEAMPQQVVGIALLNSAGQFGSPDDSTIETEESTLQKVILKPLKEIFQRVALGFLFWQAKQPARVESVLKSVYKNTSNVDDYLIQSITKPADDPNAGEVYYRLMTRFMSNQRKYTLDSVLSKLSCPLLLVWGDLDPWVGPAKANRIKEFYPNTTVVNLQAGHCPHDEVPELVNKALVDWLSTLPST 363

[Close]

BLAST of XM_017392301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ALE0 (AB hydrolase-1 domain-containing protein {ECO:0000259|Pfam:PF12697})

HSP 1 Score: 573.163 bits (1476), Expect = 0.000e+0
Identity = 268/342 (78.36%), Postives = 299/342 (87.43%), Query Frame = 0

Query:   20 SPPTFHTFRSKCQVNRRGFSLRGLLVTGASAMPSSLIAQPHQGLERLPFKPEGYNFWNWRGHKIHYVEQGEGFPIVLIHGFGASAYHWRYNIPELSKRYKVYAIDLLGFGWSEKALVDYDALIWRDEIVDFLKVIVKEPAVVVGNSLGGFTALLTAEALPEQIVGVALLNSAGQFGNPIDETVEPTELSFGSTVLAPVKDIFQRVVLGFLFWQAKQPARIESVLKSVYKNTTNVDDYLVESILQPATDPNAGEVYYRLMTRFMSNQRKYTLDSVLGNLSCPLLLLWGDLDPWVGPAKAISIKEFYPKTSIVNLQAGHCPHDEVPELVNKGLIDWMSSLQFTS 361
            SP   +  RSKC++NRRGF+LRG++ TGAS M SSL+A+P QGLERLPFKPEGYNFW WRGHKIHYVEQGEG PIVLIHGFGASA+HWRYNIPEL+K+YKVYAIDLLGFGWSEKA+++YDAL+WRD++VDFLK IVKEPA++VGNSLGGFTAL++A  LPEQ+VGVALLNSAGQFG+   E  +  E       L P+K+IFQRVVLGFLFWQAKQPARIESVLKSVY NT+NVDDYLVESI +PA DPNAGEVYYRLMTRFM NQ KYTLDSVL  LSCPLLLLWGD DPWVGPAKAI IKEFYP TSIVNLQAGHCPHDEVPELVNK L+DW+S+L   S
Sbjct:   26 SPARIYHHRSKCELNRRGFALRGIVATGASVMGSSLVAEPAQGLERLPFKPEGYNFWTWRGHKIHYVEQGEGSPIVLIHGFGASAFHWRYNIPELAKKYKVYAIDLLGFGWSEKAIIEYDALVWRDQVVDFLKEIVKEPAILVGNSLGGFTALVSAAGLPEQVVGVALLNSAGQFGDANREPSKSEETVLQKFFLKPLKEIFQRVVLGFLFWQAKQPARIESVLKSVYINTSNVDDYLVESITRPAADPNAGEVYYRLMTRFMMNQSKYTLDSVLSELSCPLLLLWGDRDPWVGPAKAIRIKEFYPNTSIVNLQAGHCPHDEVPELVNKALVDWLSTLTSKS 367

[Close]

BLAST of XM_017392301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1LYG5 ((Alpha/beta hydrolase fold-1 {ECO:0000313|EMBL:PWA54027.1}))

HSP 1 Score: 572.392 bits (1474), Expect = 0.000e+0
Identity = 265/364 (72.80%), Postives = 309/364 (84.89%), Query Frame = 0

Query:    1 MLYSCALTSHLLL-SPNTLSSPPTFHTFRSKCQVNRRGFSLRGLLVTGASAMPSSLIAQPHQGLERLPFKPEGYNFWNWRGHKIHYVEQGEGFPIVLIHGFGASAYHWRYNIPELSKRYKVYAIDLLGFGWSEKALVDYDALIWRDEIVDFLKVIVKEPAVVVGNSLGGFTALLTAEALPEQIVGVALLNSAGQFGNPIDE-TVEPTELSFGSTVLAPVKDIFQRVVLGFLFWQAKQPARIESVLKSVYKNTTNVDDYLVESILQPATDPNAGEVYYRLMTRFMSNQRKYTLDSVLGNLSCPLLLLWGDLDPWVGPAKAISIKEFYPKTSIVNLQAGHCPHDEVPELVNKGLIDWMSSLQFTSP 362
            M  SCA      L + N  SS      +R++C+++RR  + +G++  GAS +PSSL++ P QGLERLPFK EGY FW WRGHKIHYVE+GEGFPIVLIHGFGASA+HWRYNIPEL+K+YKVYA+DLLGFGWSEKALVDYDAL+WRD++ DFLK IVKEP ++VGNSLGGFTAL+ AEA+PEQ+VG+ALLNSAGQFG+P D+ T E  E       + P+K++FQRVVLGFLFWQAKQPAR+ESVLKSVYKNT+NVDDYL+ESI +PA DPNAGEVYYRLMTRFMSNQRKYTLDSVL  LSCPLLL+WGDLDPWVGPAKAI IKEFYP TSIVNLQAGHCPHDEVPELVNK L+DW+++L  T+P
Sbjct:    1 MSSSCATVVRTHLNTANNFSSNVKIQPYRNRCRLSRRDLATKGIVAAGASVLPSSLVSPPAQGLERLPFKKEGYKFWTWRGHKIHYVEEGEGFPIVLIHGFGASAFHWRYNIPELAKKYKVYAVDLLGFGWSEKALVDYDALVWRDQVADFLKEIVKEPTILVGNSLGGFTALVAAEAMPEQVVGIALLNSAGQFGSPEDDATTETEESPLQKFFIKPLKEVFQRVVLGFLFWQAKQPARVESVLKSVYKNTSNVDDYLIESITKPADDPNAGEVYYRLMTRFMSNQRKYTLDSVLSKLSCPLLLVWGDLDPWVGPAKAIRIKEFYPNTSIVNLQAGHCPHDEVPELVNKALVDWLATLPSTAP 364

[Close]

BLAST of XM_017392301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6M6R1 (AB hydrolase-1 domain-containing protein {ECO:0000259|Pfam:PF12697})

HSP 1 Score: 566.614 bits (1459), Expect = 0.000e+0
Identity = 258/344 (75.00%), Postives = 302/344 (87.79%), Query Frame = 0

Query:   14 SPNTLSSPPTFHTFRSKCQVNRRGFSLRGLLVTGASAMPSSLIAQPHQGLERLPFKPEGYNFWNWRGHKIHYVEQGEGFPIVLIHGFGASAYHWRYNIPELSKRYKVYAIDLLGFGWSEKALVDYDALIWRDEIVDFLKVIVKEPAVVVGNSLGGFTALLTAEALPEQIVGVALLNSAGQFGNPIDETVEPTELSFGSTVLAPVKDIFQRVVLGFLFWQAKQPARIESVLKSVYKNTTNVDDYLVESILQPATDPNAGEVYYRLMTRFMSNQRKYTLDSVLGNLSCPLLLLWGDLDPWVGPAKAISIKEFYPKTSIVNLQAGHCPHDEVPELVNKGLIDWMSSL 357
            + N  SS    H +R+KC ++RR F+ +G++  GAS +PS+L++Q  QGLERLPFK +GYNFW WRGHKIHYVE+GEGFPIVLIHGFGASA+HWRYNIPEL+K+YKVYA+DLLGFGWSEKALVDYDAL+WRD++ DFLK IVKEP ++VGNSLGGFTAL+ AEA+ EQ+VG+ LLNSAGQFG+P DE  E  E  F   ++ P+K+IFQRVVLGFLFWQAKQPAR+ESVLKSVYKNT+NVDDYL++SI +PA DPNAGEVYYRLMTRFMSNQRKYTLDSVL  LSCPLLL+WGDLDPWVGPAKA+ IKEFYP TSIVNLQAGHCPHDEVPELVNK L+DW+++L
Sbjct:   18 TANKFSSIVKVHPYRNKCGLSRRDFATKGIVAAGASVIPSTLLSQSAQGLERLPFKNDGYNFWTWRGHKIHYVEEGEGFPIVLIHGFGASAFHWRYNIPELAKKYKVYAVDLLGFGWSEKALVDYDALVWRDQVADFLKEIVKEPTILVGNSLGGFTALVAAEAMKEQVVGIVLLNSAGQFGSPNDEENEAQESPFQKFLIKPLKEIFQRVVLGFLFWQAKQPARVESVLKSVYKNTSNVDDYLIQSITRPADDPNAGEVYYRLMTRFMSNQRKYTLDSVLSKLSCPLLLVWGDLDPWVGPAKALRIKEFYPNTSIVNLQAGHCPHDEVPELVNKALVDWLATL 361

[Close]

BLAST of XM_017392301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103XKR5 ((Alpha/beta hydrolase fold-1 {ECO:0000313|EMBL:KVH92369.1}))

HSP 1 Score: 566.229 bits (1458), Expect = 0.000e+0
Identity = 261/367 (71.12%), Postives = 307/367 (83.65%), Query Frame = 0

Query:    1 MLYSCALTSHLLLS----PNTLSSPPTFHTFRSKCQVNRRGFSLRGLLVTGASAMPSSLIAQPHQGLERLPFKPEGYNFWNWRGHKIHYVEQGEGFPIVLIHGFGASAYHWRYNIPELSKRYKVYAIDLLGFGWSEKALVDYDALIWRDEIVDFLKVIVKEPAVVVGNSLGGFTALLTAEALPEQIVGVALLNSAGQFGNPIDETVEPTELSFGSTVLAPVKDIFQRVVLGFLFWQAKQPARIESVLKSVYKNTTNVDDYLVESILQPATDPNAGEVYYRLMTRFMSNQRKYTLDSVLGNLSCPLLLLWGDLDPWVGPAKAISIKEFYPKTSIVNLQAGHCPHDEVPELVNKGLIDWMSSLQFTSPV 363
            M  SCA   H + +     N  +S    H +R++C ++RR  + +G++  GAS +PS+L++ P QGLERLPFK +GY FW WRGHKIHYVE+GEGFPIVLIHGFGASA+HWRYNIPEL+K+YKVYA+DLLGFGWSEKALV+YDAL+WRD++ DFLK IVKEP ++VGNSLGGFTAL+ AEA+P+Q+VG+ALLNSAGQFG+P D T E  E       + P+K++FQRVVLGFLFWQAKQPAR+ESVLKSVYKNT NVDDYL+ESI +PA DPNAGEVYYRLMTRFMSNQRKYTLDSVL  LSCPLLL+WGDLDPWVGPAKA+ IKEFYP TSIVNLQAGHCPHDEVPELVNK L+DW+S+L   S V
Sbjct:    1 MSSSCATVPHPVTTDWSAANNFNSTMRIHPYRNRCGLSRRDLATKGIVAAGASVIPSNLVSPPAQGLERLPFKKDGYKFWTWRGHKIHYVEEGEGFPIVLIHGFGASAFHWRYNIPELAKKYKVYAVDLLGFGWSEKALVEYDALVWRDQVADFLKEIVKEPTILVGNSLGGFTALVAAEAMPKQVVGIALLNSAGQFGSPDDSTTETEESPLQKFFIKPLKEVFQRVVLGFLFWQAKQPARVESVLKSVYKNTANVDDYLIESITRPADDPNAGEVYYRLMTRFMSNQRKYTLDSVLSKLSCPLLLVWGDLDPWVGPAKAMRIKEFYPNTSIVNLQAGHCPHDEVPELVNKALVDWLSTLPSASTV 367

[Close]

BLAST of XM_017392301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C620 ((Putative Alpha/beta-Hydrolases superfamily protein {ECO:0000313|EMBL:MPA74833.1}) (Fragment))

HSP 1 Score: 566.229 bits (1458), Expect = 0.000e+0
Identity = 267/352 (75.85%), Postives = 303/352 (86.08%), Query Frame = 0

Query:   12 LLSP--NTLSSPPTFHTFRSKCQVNRRGFSLRGLLVTGASAMPSSLIAQPHQGLERLPFKPEGYNFWNWRGHKIHYVEQGEGFPIVLIHGFGASAYHWRYNIPELSKRYKVYAIDLLGFGWSEKALVDYDALIWRDEIVDFLKVIVKEPAVVVGNSLGGFTALLTAEALPEQIVGVALLNSAGQFGNPIDETVEPTELSFGSTVLAPVKDIFQRVVLGFLFWQAKQPARIESVLKSVYKNTTNVDDYLVESILQPATDPNAGEVYYRLMTRFMSNQRKYTLDSVLGNLSCPLLLLWGDLDPWVGPAKAISIKEFYPKTSIVNLQAGHCPHDEVPELVNKGLIDWMSSLQFTS 361
            LL+P  N  ++P   +  RSKC++NRRGF+LRG++ TGAS M SSL+A+P Q LERLPFKPEGYNFW WRGHKIHYVEQGEG PIVLIHGFGASA+HWRYNIPEL+K+YKVYAIDLLGFGWSEKA+++YDAL+WRD++VDFLK IVKEPAV+VGNSLGGFTAL++A  LPEQ+ GVALLNSAGQFG+   E  +  E       L P+K+IFQRVVLGFLFWQAKQPARIESVLKSVY NT+NVDDYLVESI +PA DPNAGEVYYRLMTRFM NQ KY+L+SVL  LSCPLLLLWGD DPWVGPAKAI IKEFYP TS+V LQAGHCPHDEVPELVNK L+DW+S+L F S
Sbjct:   50 LLNPISNRFTAPARIYHHRSKCELNRRGFALRGIVATGASVMGSSLVAEPAQCLERLPFKPEGYNFWTWRGHKIHYVEQGEGSPIVLIHGFGASAFHWRYNIPELAKKYKVYAIDLLGFGWSEKAIIEYDALVWRDQVVDFLKEIVKEPAVLVGNSLGGFTALVSAAGLPEQVAGVALLNSAGQFGDANSEPNKSEETLLQKFFLKPLKEIFQRVVLGFLFWQAKQPARIESVLKSVYINTSNVDDYLVESITRPAADPNAGEVYYRLMTRFMLNQSKYSLNSVLSELSCPLLLLWGDKDPWVGPAKAIRIKEFYPNTSLVTLQAGHCPHDEVPELVNKALVDWLSTLTFKS 401

[Close]

BLAST of XM_017392301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7N1J0 (AB hydrolase-1 domain-containing protein {ECO:0000259|Pfam:PF12697})

HSP 1 Score: 565.459 bits (1456), Expect = 0.000e+0
Identity = 259/344 (75.29%), Postives = 301/344 (87.50%), Query Frame = 0

Query:   14 SPNTLSSPPTFHTFRSKCQVNRRGFSLRGLLVTGASAMPSSLIAQPHQGLERLPFKPEGYNFWNWRGHKIHYVEQGEGFPIVLIHGFGASAYHWRYNIPELSKRYKVYAIDLLGFGWSEKALVDYDALIWRDEIVDFLKVIVKEPAVVVGNSLGGFTALLTAEALPEQIVGVALLNSAGQFGNPIDETVEPTELSFGSTVLAPVKDIFQRVVLGFLFWQAKQPARIESVLKSVYKNTTNVDDYLVESILQPATDPNAGEVYYRLMTRFMSNQRKYTLDSVLGNLSCPLLLLWGDLDPWVGPAKAISIKEFYPKTSIVNLQAGHCPHDEVPELVNKGLIDWMSSL 357
            + N  SS    H +R+KC ++RR F+ +G++  GAS +PS+L +Q  QGLERLPFK +GYNFW WRGHKIHYVE+GEGFPIVLIHGFGASA+HWRYNIPEL+K+YKVYA+DLLGFGWSEKALVDYDAL+WRD++ DFLK IVKEP ++VGNSLGGFTAL+ AEA+ EQ+VG+ LLNSAGQFG+P DE  E  E  F   +L P+K+IFQRVVLGFLFWQAKQPAR+ESVLKSVYKNT+NVDDYL++SI +PA DPNAGEVYYRLMTRFMSNQRKYTLDSVL  LSCPLLL+WGDLDPWVGPAKA+ IKEFYP TSIVNLQAGHCPHDEVPELVNK L+DW+++L
Sbjct:   14 TANKFSSIVKVHPYRNKCGLSRRDFATKGIVAAGASVIPSTLPSQSAQGLERLPFKNDGYNFWTWRGHKIHYVEEGEGFPIVLIHGFGASAFHWRYNIPELAKKYKVYAVDLLGFGWSEKALVDYDALVWRDQVADFLKEIVKEPTILVGNSLGGFTALVAAEAMKEQVVGIVLLNSAGQFGSPNDEENEAQESPFQKFLLKPLKEIFQRVVLGFLFWQAKQPARVESVLKSVYKNTSNVDDYLIQSITRPADDPNAGEVYYRLMTRFMSNQRKYTLDSVLSKLSCPLLLVWGDLDPWVGPAKALRIKEFYPNTSIVNLQAGHCPHDEVPELVNKALVDWLATL 357

[Close]

BLAST of XM_017392301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067K5Z2 (AB hydrolase-1 domain-containing protein {ECO:0000259|Pfam:PF12697})

HSP 1 Score: 565.459 bits (1456), Expect = 0.000e+0
Identity = 265/355 (74.65%), Postives = 303/355 (85.35%), Query Frame = 0

Query:    4 SCALTSHLLLSPNT-LSSPPTFHTFRSKCQVNRRGFSLRGLLVTGASAMPSSLIAQPHQGLERLPFKPEGYNFWNWRGHKIHYVEQGEGFPIVLIHGFGASAYHWRYNIPELSKRYKVYAIDLLGFGWSEKALVDYDALIWRDEIVDFLKVIVKEPAVVVGNSLGGFTALLTAEALPEQIVGVALLNSAGQFGNPIDETVEPTELSFGSTVLAPVKDIFQRVVLGFLFWQAKQPARIESVLKSVYKNTTNVDDYLVESILQPATDPNAGEVYYRLMTRFMSNQRKYTLDSVLGNLSCPLLLLWGDLDPWVGPAKAISIKEFYPKTSIVNLQAGHCPHDEVPELVNKGLIDWMSSL 357
            S +L S L    NT   +P     +RSKC +NRRGF+L+G++ +  S M SSL  +P QGLE+LPFKPEGYN+W WRG KIHYV QGEGFPIVLIHGFGASA+HWRYNIPEL+K+YKVYA+DLLGFGWSEKA+++YDAL+WRD++VDFLK IVKEPAV+VGNSLGGFTAL++A ALPEQ+VGVALLNSAGQFGNP  ET +  E +    +L P+K+IFQRVVLGFLFWQAKQPARIESVLKSVY NT+NVDDYLVESI +PA DPNAGEVYYRLMTRFM NQ KYTLDS L  L CPLLLLWGDLDPWVGPAKA  IKEFYP+T++VNLQAGHCPHDEVPELVN+ L+DWMSSL
Sbjct:    8 SPSLRSQLFSYNNTRFIAPARLAQYRSKCVMNRRGFALKGIMASSVSVMGSSLATEPAQGLEKLPFKPEGYNYWTWRGRKIHYVVQGEGFPIVLIHGFGASAFHWRYNIPELAKKYKVYALDLLGFGWSEKAIIEYDALVWRDQVVDFLKEIVKEPAVIVGNSLGGFTALVSAVALPEQVVGVALLNSAGQFGNPNGETTKSEESASQKFILKPLKEIFQRVVLGFLFWQAKQPARIESVLKSVYINTSNVDDYLVESITRPAADPNAGEVYYRLMTRFMLNQSKYTLDSALSELRCPLLLLWGDLDPWVGPAKANRIKEFYPRTTLVNLQAGHCPHDEVPELVNRALMDWMSSL 362

[Close]

BLAST of XM_017392301.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6LYJ3 (AB hydrolase-1 domain-containing protein {ECO:0000259|Pfam:PF12697})

HSP 1 Score: 563.918 bits (1452), Expect = 0.000e+0
Identity = 256/361 (70.91%), Postives = 306/361 (84.76%), Query Frame = 0

Query:    4 SCALTSHLLLS----PNTLSSPPTFHTFRSKCQVNRRGFSLRGLLVTGASAMPSSLIAQPHQGLERLPFKPEGYNFWNWRGHKIHYVEQGEGFPIVLIHGFGASAYHWRYNIPELSKRYKVYAIDLLGFGWSEKALVDYDALIWRDEIVDFLKVIVKEPAVVVGNSLGGFTALLTAEALPEQIVGVALLNSAGQFGNPIDETVEPTELSFGSTVLAPVKDIFQRVVLGFLFWQAKQPARIESVLKSVYKNTTNVDDYLVESILQPATDPNAGEVYYRLMTRFMSNQRKYTLDSVLGNLSCPLLLLWGDLDPWVGPAKAISIKEFYPKTSIVNLQAGHCPHDEVPELVNKGLIDWMSSLQFT 360
            SCA   H + +     N  +     H +R++C ++RR F+ +G++  GAS MPS+L++QP QGLERLPFK +GYNFW WRGHKIHYV +G+GFPIVLIHGFGASA+HWRYNIPEL+K+YKVYA+DLLGFGWSEKALVDYDAL+WRD++ DFLK IVKEP ++VGNSLGGFTAL+ AEA+P+Q+VG+ALLNSAGQFG+  D T E  E +    +L P+K+IFQRVVLGFLFWQAKQPAR+ESVLKSVYKNT+NVDDYL++SI +PA DPNAGEVYYRLM+RFMSNQ+KYTLDSVL  LSCPLLL+WGDLDPWVGP KAI IKEFYP T++VNLQAGHCPHDEVPE VNK L+DW+S+L  T
Sbjct:    4 SCATVPHRVRTEWRTSNKFTPAIKVHPYRNRCGLSRRDFATKGIVAAGASVMPSTLVSQPAQGLERLPFKNDGYNFWTWRGHKIHYVVEGQGFPIVLIHGFGASAFHWRYNIPELAKKYKVYAVDLLGFGWSEKALVDYDALVWRDQVADFLKEIVKEPTILVGNSLGGFTALVAAEAMPQQVVGIALLNSAGQFGSSDDVTTEAEESTVQKFILKPLKEIFQRVVLGFLFWQAKQPARVESVLKSVYKNTSNVDDYLIQSITKPADDPNAGEVYYRLMSRFMSNQKKYTLDSVLSKLSCPLLLVWGDLDPWVGPTKAIRIKEFYPNTTVVNLQAGHCPHDEVPEAVNKALVDWLSTLPST 364


Match Name	Stats	Description
A0A2R6S2I4	E-Value: 0.000e+0, PID: 73.98	(Pheophytinase {ECO:0000313\|EMBL:PSS36487.1})[more]
A0A251T894	E-Value: 0.000e+0, PID: 73.50	(Putative alpha/beta-Hydrolases superfamily protei... [more]
A0A5J5ALE0	E-Value: 0.000e+0, PID: 78.36	AB hydrolase-1 domain-containing protein {ECO:0000... [more]
A0A2U1LYG5	E-Value: 0.000e+0, PID: 72.80	(Alpha/beta hydrolase fold-1 {ECO:0000313\|EMBL:PWA... [more]
A0A2J6M6R1	E-Value: 0.000e+0, PID: 75.00	AB hydrolase-1 domain-containing protein {ECO:0000... [more]
A0A103XKR5	E-Value: 0.000e+0, PID: 71.12	(Alpha/beta hydrolase fold-1 {ECO:0000313\|EMBL:KVH... [more]
A0A5B7C620	E-Value: 0.000e+0, PID: 75.85	(Putative Alpha/beta-Hydrolases superfamily protei... [more]
A0A6S7N1J0	E-Value: 0.000e+0, PID: 75.29	AB hydrolase-1 domain-containing protein {ECO:0000... [more]
A0A067K5Z2	E-Value: 0.000e+0, PID: 74.65	AB hydrolase-1 domain-containing protein {ECO:0000... [more]
A0A5N6LYJ3	E-Value: 0.000e+0, PID: 70.91	AB hydrolase-1 domain-containing protein {ECO:0000... [more]

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100	The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR	This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.