XM_017389916.1

Resource Type: 
Polypeptide
Name: 
XM_017389916.1
Identifier: 
XM_017389916.1-protein
Sequence: 
FSIHFKTHLQSFPSQPLKYRETIYSRVQCSATVTTVLDTPSLEAHSNSVA
ANRSWSESTSNAVLDLEKLHLASLEVHSNSVATDRPWTHISDMDPPSEAT
LPMENLLTSEEAVIAAAASEAVALARAAAKSAKDAAMINSHKNSTKIDVK
PTALTYEAVDSLSERPELTQLGVAGVSQISQSEGRSDVEEPTVEELQILQ
EELGKSIAVRSSRQPERKARRARAAEKASATVVSVKSGSMSKKKRASQEI
DHSDPLRYLRQTTSSSKLLTATEEQELSEGIQALLRLEKIYKELSERYGG
EPSFIQWASAAGVDQITLRRQINYGKFCKDKMIKSNVRLVISIAKNYLKS
GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQS
RTIRLPIYMVEAGYRVKEARQNLYNKNGRQASHEELAEATGLTMSRLSNV
LLAPKPPRSLDQKIGFDLDLKPSDVIADPEAETSEELLIKELMRQDLNKV
LDTLKPREKQVVRWRFGLDDGRMKTLQEIGEIMGVSRERIRQIELCAFRK
LKNKRRTKSLQQYIIG
Sequence Length: 
566
Sequence Checksum: 
44f2ace8f686d92a99b903cb667a3d47
View location in JBrowse: 
DCARv2_Chr4:8607022..8612793+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017389916.1, derives from mRNA, XM_017389916.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017389916.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017389916.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4B029 (RNA polymerase sigma factor {ECO:0000256|PIRNR:PIRNR000767})

HSP 1 Score: 669.463 bits (1726), Expect = 0.000e+0
Identity = 370/585 (63.25%), Postives = 444/585 (75.90%), Query Frame = 0
 
Query:    1 FSIHFKTHLQSFPSQPLKYRETIYSRVQCSATVTTVLDTPSLEAHSNSVAANRSWSESTSNAVLDLEKLHLASLEVHSNSVATDRPWTHISDMDPPS----EATLPMENLLTSEEAVIAAAASEAVALARAAAKSAKDAAMINSHKNSTKIDVKPTALTYEAVDSLS-------ERPELTQLGVAGVSQISQSEGRS--------DVEEPTVEELQILQEELGKSIAVRSSRQPERKARRARAAEKASATVVSVKSGSMSKKKRAS-QEIDHSDPLRYLRQTTSSSKLLTATEEQELSEGIQALLRLEKIYKELSERYGGEPSFIQWASAAGVDQITLRRQINYGKFCKDKMIKSNVRLVISIAKNYLKSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPIYMVEAGYRVKEARQNLYNKNGRQASHEELAEATGLTMSRLSNVLLAPKPPRSLDQKIGFDLDLKPSDVIADPEAETSEELLIKELMRQDLNKVLDTLKPREKQVVRWRFGLDDGRMKTLQEIGEIMGVSRERIRQIELCAFRKLKNKRRTKSLQQYII 565
            FSIHF+THL        K R++I S   C      +L T S    S S+A         +  VL+LEKL L SL+ +S+SV  +RPWT+   + PP+    EATL  E LLTSEEAVIAAAA+EAV LA+AA K AKDA ++ ++   T+   + T+L     D+L        +  +  +LG +   + +Q +  S        D  EPT EEL++LQ +L   IAVRS RQ ERKARR RAAEKA+ATVVSVKSGS  +KKRAS Q+IDHSDPLRYLR TTS+S+LLTATEE ELSEGIQ LL+LEK+ +EL+ER G +P+F QWA+AAGVDQ TLRR+INYG  CKDKMIKSN+RLVISIAKNY  +GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLP +MVEA YRVKEAR+ LY+KNGR    EE+AEATGL+M RL+ VLL PK PRSL+QKIG + +LKPS+VIADP+AETSE++LI++ M+QDL+KVLD+L PREKQV+RWRFG++DGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNK+RTK LQQY++
Sbjct:   15 FSIHFRTHLP-------KPRDSISSWPHC------ILSTSS---PSTSMA---------TTTVLNLEKLRLPSLDANSDSVTANRPWTYTGAIGPPAKANLEATLATETLLTSEEAVIAAAAAEAVTLAKAAVKVAKDATLLINNNPCTR--AESTSLFSPEDDALHLKWPQHMKTGQPVRLGDSMGPKTAQLDDYSMQCAIKEADDLEPTHEELELLQSQLSNGIAVRSRRQTERKARRTRAAEKAAATVVSVKSGSTVRKKRASLQDIDHSDPLRYLRATTSTSRLLTATEEIELSEGIQDLLKLEKLQEELTERCGSQPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRHPDDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEVIADPDAETSEDVLIRKFMKQDLDKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLV 572
[Close]
BLAST of XM_017389916.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZZE0 (RNA polymerase sigma factor {ECO:0000256|PIRNR:PIRNR000767})

HSP 1 Score: 667.537 bits (1721), Expect = 0.000e+0
Identity = 391/584 (66.95%), Postives = 449/584 (76.88%), Query Frame = 0
 
Query:    1 FSIHFKTHLQSFPSQPLKYRETIYSRVQCSATVTTVLDTPSLEAHSNSVAANRSWSESTSNAVLDLEKLHLASLEVHSNSVATDRPWTHISDMDPPSEA----TLPMENLLTSEEAVIAAAASEAVALARAAAKSAKDAAMINSHKNSTKIDVKPTALTYEAVDSLSERPELT---QLGVAGVSQISQSEGR-----------SDVEEPTVEELQILQEELGKSIAVRSSRQPERKARRARAAEKASATVVSVKSGSMSKKKRAS-QEIDHSDPLRYLRQTTSSSKLLTATEEQELSEGIQALLRLEKIYKELSERYGGEPSFIQWASAAGVDQITLRRQINYGKFCKDKMIKSNVRLVISIAKNYLKSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPIYMVEAGYRVKEARQNLYNKNGRQASHEELAEATGLTMSRLSNVLLAPKPPRSLDQKIGFDLDLKPSDVIADPEAETSEELLIKELMRQDLNKVLDTLKPREKQVVRWRFGLDDGRMKTLQEIGEIMGVSRERIRQIELCAFRKLKNKRRTKSLQQYII 565
            FS++F+ H  S  +Q  K RE +Y R QC      +L T S    S S A         +  VLDLEKL L SLE HSNSVA  RPWT+I  + PP EA    TL  E LLTSEEAVIAAAA+EAVALA+AA K AKD AM+     STK D KP  ++ EA     ER +LT   Q+GV G S  +++  R           SD  EPT EEL++LQ +L  SIAVRS RQ ERKA+R RAAEKA+A VVSVKSG  S+K+RAS Q++D+SDPLRYLR TTS+S+LLT TEE ELSEGIQ LL+LEK++ EL+ER GGE +F QWA+AAGVDQ TLR+++NYG  CKDKMIKSNVRLVISIAKNY  +GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLP +MVEA YRVKEAR+ LY++NGR   +EE+AEATGL+M RL+ VLLAPK PRSLDQKIG + DLKPSDVIADP+AET E+LLIK+ M+QDL KVLDTL PREKQVVRWRFGL+DGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNK+RTK LQQY+I
Sbjct:   15 FSVNFRAHHHS-TTQSSKSREPVYFRTQC------ILSTAS---PSTSAA---------TTTVLDLEKLQLPSLESHSNSVAVGRPWTYIGAVGPPMEANFKATLATETLLTSEEAVIAAAAAEAVALAKAAVKVAKDVAMMVRDNYSTKSDSKPAIISSEADTFQFERAQLTPTGQVGVIGESLRAETGIREFYSSQLPIKESDDLEPTHEELELLQAQLSNSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGYTSRKRRASLQDVDYSDPLRYLRSTTSTSRLLTTTEEHELSEGIQDLLKLEKLHDELTERCGGETTFTQWAAAAGVDQKTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDNEEVAEATGLSMKRLTAVLLAPKAPRSLDQKIGINQDLKPSDVIADPDAETLEDLLIKQFMKQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLI 579
[Close]
BLAST of XM_017389916.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZYY3 (RNA polymerase sigma factor {ECO:0000256|PIRNR:PIRNR000767})

HSP 1 Score: 667.537 bits (1721), Expect = 0.000e+0
Identity = 390/584 (66.78%), Postives = 449/584 (76.88%), Query Frame = 0
 
Query:    1 FSIHFKTHLQSFPSQPLKYRETIYSRVQCSATVTTVLDTPSLEAHSNSVAANRSWSESTSNAVLDLEKLHLASLEVHSNSVATDRPWTHISDMDPPSEA----TLPMENLLTSEEAVIAAAASEAVALARAAAKSAKDAAMINSHKNSTKIDVKPTALTYEAVDSLSERPELT---QLGVAGVSQISQSEGR-----------SDVEEPTVEELQILQEELGKSIAVRSSRQPERKARRARAAEKASATVVSVKSGSMSKKKRAS-QEIDHSDPLRYLRQTTSSSKLLTATEEQELSEGIQALLRLEKIYKELSERYGGEPSFIQWASAAGVDQITLRRQINYGKFCKDKMIKSNVRLVISIAKNYLKSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPIYMVEAGYRVKEARQNLYNKNGRQASHEELAEATGLTMSRLSNVLLAPKPPRSLDQKIGFDLDLKPSDVIADPEAETSEELLIKELMRQDLNKVLDTLKPREKQVVRWRFGLDDGRMKTLQEIGEIMGVSRERIRQIELCAFRKLKNKRRTKSLQQYII 565
            FS++F+ H  S  +Q  K RE +Y R QC      +L T S    S S A         +  VLDLEKL L SLE HSNSVA  RPWT+I  + PP EA    TL  E LLTSEEAVIAAAA+EAVALA+AA K AKD AM+     STK D KP  ++ EA     ER +LT   Q+GV G S  +++  R           SD  EPT EEL++LQ +L  SIAVRS RQ ERKA+R RAAEKA+A VVSVKSG  S+K+RAS Q++D+SDPLRYLR TTS+S+LLT TEE ELSEGIQ LL+LEK++ EL+ER GGE +F QWA+AAGVDQ TLR+++NYG  CKDKMIKSNVRLVISIAKNY  +GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP +MVEA YRVKEAR+ LY++NGR  ++EE+AEATGL+M RL+ VLL PK PRSLDQKIG + +LKPS+VIADP+AETSE+LLIK  M+QDL KVLDTL PREKQV+RWRFGL DGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKRRTK LQQY+I
Sbjct:   15 FSVNFRAHHHS-TTQSSKSREPVYFRTQC------ILSTAS---PSTSAA---------TTTVLDLEKLQLPSLESHSNSVAVGRPWTYIGAVGPPMEANFKATLATETLLTSEEAVIAAAAAEAVALAKAAVKVAKDVAMMVRDNYSTKSDSKPAIISSEADTFQFERAQLTPTGQVGVIGESLRAETGIREFYSSQLPIKESDDLEPTHEELELLQAQLSNSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGYTSRKRRASLQDVDYSDPLRYLRSTTSTSRLLTTTEEHELSEGIQDLLKLEKLHDELTERCGGETTFTQWAAAAGVDQKTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMRRLTAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETSEDLLIKLFMKQDLEKVLDTLNPREKQVIRWRFGLQDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLI 579
[Close]
BLAST of XM_017389916.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2BUR2 (RNA polymerase sigma factor {ECO:0000256|PIRNR:PIRNR000767})

HSP 1 Score: 656.751 bits (1693), Expect = 0.000e+0
Identity = 368/598 (61.54%), Postives = 441/598 (73.75%), Query Frame = 0
 
Query:    1 FSIHFKTHLQSFPSQPLKYRETIYSRVQCSATVTTV--------------LDTPSLEAHSNSVAANRSWSE--STSNAVLDLEKLHLASLEVHSNSVATDRPWTHISDMDPPSEATLPMENLLTSEEAVIAAAASEAVALARAAAKSAKDAAMINSHKNSTKIDVKPTALTYEAVDSLSERPELTQ----LGVAGVSQISQSEGR-------------SDVEEPTVEELQILQEELGKSIAVRSSRQPERKARRARAAEKASATVVSVKSGSMSKKKRAS-QEIDHSDPLRYLRQTTSSSKLLTATEEQELSEGIQALLRLEKIYKELSERYGGEPSFIQWASAAGVDQITLRRQINYGKFCKDKMIKSNVRLVISIAKNYLKSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPIYMVEAGYRVKEARQNLYNKNGRQASHEELAEATGLTMSRLSNVLLAPKPPRSLDQKIGFDLDLKPSDVIADPEAETSEELLIKELMRQDLNKVLDTLKPREKQVVRWRFGLDDGRMKTLQEIGEIMGVSRERIRQIELCAFRKLKNKRRTKSLQQYI 564
            F I  KT  Q+   Q  K R+ I+ R QC  + T+               L  PS+E  SNSVAA RSW    + +  V D++KL L S E + +SVA DRPWT+   + PP+EA    E+ L SEEA++AAAA+EAVALA+AA K A+DA M+  + N    D        EA  +  E   L Q     GV   ++++ SE +             SD  EP+ EEL+ILQ +L   IAV+S+RQ ERKARRA+A ++A+A VVSVKSGS S+KKRAS Q++D+SDPLRYLR TT SS+LLTA+EEQELS GIQ LL+LE++  EL+ER GG+P+F QWA+AAGVDQ+TLR+++NYG  CKDKMIKSNVRLVISIAKNY   GMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRK LSDQSRTIRLP +MVEA YRVKEAR+ L  +NGR  +  E+AEATGL+M RL+ V+L PK PRSLDQKIGF+  LKPS+V+ADP+AETSEE+L K+ MRQDL KVLDTL PREKQVVRWRFGL+DGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNK+RTK LQQYI
Sbjct:   15 FVICAKTQQQT-TIQLSKSRDNIHLRTQCILSTTSAVTSTATSTVLGIEKLQLPSIEILSNSVAAERSWKSPSAATTTVPDIQKLKLPSFEANPDSVAPDRPWTYTGAVGPPAEANTKPEDSLASEEAIVAAAAAEAVALAKAALKGAQDAVMLVGYNNLKDSDNVGRGTLSEARTAPFESVHLAQPGETRGVGVYAELNGSEMKWTGSSLFRDTLTDSDDLEPSHEELEILQSQLSNVIAVKSNRQNERKARRAKAVQRAAANVVSVKSGSTSRKKRASVQDVDYSDPLRYLRGTTCSSRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWAAAAGVDQMTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLTENGRHPNDAEVAEATGLSMKRLAAVMLTPKAPRSLDQKIGFNESLKPSEVLADPDAETSEEILTKQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKFLQQYI 611
[Close]
BLAST of XM_017389916.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7F260 (RNA polymerase sigma factor {ECO:0000256|PIRNR:PIRNR000767})

HSP 1 Score: 656.751 bits (1693), Expect = 0.000e+0
Identity = 367/598 (61.37%), Postives = 441/598 (73.75%), Query Frame = 0
 
Query:    1 FSIHFKTHLQSFPSQPLKYRETIYSRVQCSATVTTV--------------LDTPSLEAHSNSVAANRSWSE--STSNAVLDLEKLHLASLEVHSNSVATDRPWTHISDMDPPSEATLPMENLLTSEEAVIAAAASEAVALARAAAKSAKDAAMINSHKNSTKIDVKPTALTYEAVDSLSERPELTQ----LGVAGVSQISQSEGR-------------SDVEEPTVEELQILQEELGKSIAVRSSRQPERKARRARAAEKASATVVSVKSGSMSKKKRAS-QEIDHSDPLRYLRQTTSSSKLLTATEEQELSEGIQALLRLEKIYKELSERYGGEPSFIQWASAAGVDQITLRRQINYGKFCKDKMIKSNVRLVISIAKNYLKSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPIYMVEAGYRVKEARQNLYNKNGRQASHEELAEATGLTMSRLSNVLLAPKPPRSLDQKIGFDLDLKPSDVIADPEAETSEELLIKELMRQDLNKVLDTLKPREKQVVRWRFGLDDGRMKTLQEIGEIMGVSRERIRQIELCAFRKLKNKRRTKSLQQYI 564
            F I  KT  Q+   Q  K R++I+ R QC  + T+               L  PS+E  SNSVAA RSW    + +  V  ++KL L S E + +SVA DRPWT+   + PP+EA    E+ L SEEA++AAAA+EAVALA+AA K A+DA M+  + N    D        EA  +  E   L Q     GV   ++++ SE +             SD  EP+ EEL+ILQ +L   IAV+S+RQ ERKARRA+A E+A+A VVSVKSGS S+KKRAS Q++D+SDPLRYLR TT SS+LLTA+EEQELS GIQ LL+LE++  EL+ER GG+P+F QWA+AAGVDQ+TLR+++NYG  CKDKMIKSNVRLVISIAKNY   GMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRK LSDQSRTIRLP +MVEA YRVKEAR+ L  +NGR  +  E+AEATGL+M RL+ V+L PK PRSLDQK+GF+  LKPS+V+ADP+AETSEE+L K+ MRQDL KVLDTL PREKQVVRWRFGL+DGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNK+RTK LQQYI
Sbjct:   15 FVICAKTQQQT-TIQLSKSRDSIHLRTQCILSTTSAVTSTATSTVLGIEKLQLPSIEILSNSVAAERSWKSPSAATTTVPGIQKLKLPSFEANPDSVAPDRPWTYTGAVGPPAEANTKPEDSLASEEAIVAAAAAEAVALAKAALKGAQDAVMLVGYNNLKDSDNVGRGTLSEARTAPFESVHLAQPGETRGVGVCAELNGSEMKWTGSSLFRDTLTDSDDLEPSHEELEILQSQLSNVIAVKSNRQTERKARRAKAVERAAANVVSVKSGSTSRKKRASVQDVDYSDPLRYLRGTTCSSRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWAAAAGVDQMTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLTENGRHPNDAEVAEATGLSMKRLAAVMLTPKAPRSLDQKVGFNESLKPSEVLADPDAETSEEILTKQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKFLQQYI 611
[Close]
BLAST of XM_017389916.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1D2M3 (RNA polymerase sigma factor {ECO:0000256|PIRNR:PIRNR000767})

HSP 1 Score: 655.596 bits (1690), Expect = 0.000e+0
Identity = 367/598 (61.37%), Postives = 439/598 (73.41%), Query Frame = 0
 
Query:    1 FSIHFKTHLQSFPSQPLKYRETIYSRVQCSATVTTV--------------LDTPSLEAHSNSVAANRSWSE--STSNAVLDLEKLHLASLEVHSNSVATDRPWTHISDMDPPSEATLPMENLLTSEEAVIAAAASEAVALARAAAKSAKDAAMINSHKNSTKIDVKPTALTYEAVDSLSERPELTQLG----VAGVSQISQSEGR-------------SDVEEPTVEELQILQEELGKSIAVRSSRQPERKARRARAAEKASATVVSVKSGSMSKKKRAS-QEIDHSDPLRYLRQTTSSSKLLTATEEQELSEGIQALLRLEKIYKELSERYGGEPSFIQWASAAGVDQITLRRQINYGKFCKDKMIKSNVRLVISIAKNYLKSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPIYMVEAGYRVKEARQNLYNKNGRQASHEELAEATGLTMSRLSNVLLAPKPPRSLDQKIGFDLDLKPSDVIADPEAETSEELLIKELMRQDLNKVLDTLKPREKQVVRWRFGLDDGRMKTLQEIGEIMGVSRERIRQIELCAFRKLKNKRRTKSLQQYI 564
            F I  KT  Q+   Q  K R+ I+ R QC  + T+               L  PS+E  SNSVAA RSW    + +  V D++KL L S E + +SVA DRPWT+   + PP+EA    EN L SEEA++AAAA+EAVALA+AA K A+DA M+  + N    D        EA  +  E   L Q G    V   ++++ SE +             SD  EP+ EEL+ILQ +L   IAV+S+RQ ERKA+RA++ EKA+A VV+VKSGS S+KKRAS Q++D+SDPLRYLR TT SS+LLTA+EEQELS GIQ LL+LE++  EL+ER GG+P+F QWA+AAGVDQ+TLR+++NYG  CKDKMIKSNVRLVISIAKNY   GMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRK LSDQSR IRLP +MVEA YRVKEAR+ L  +NGR  +  E+AEA GL+M RL+ V+L PK PRSLDQKIGF+  LKPS+V+ADPEAETSEE+L K+ MRQDL KVLDTL PREKQVVRWRFGL+DGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNK+RTK LQQYI
Sbjct:   15 FVICAKTQQQT-TIQLSKSRDHIHLRTQCILSTTSAVTSTATSTVLGIEKLQLPSIEILSNSVAAERSWKSPSAATTTVPDIQKLKLPSFEANPDSVAPDRPWTYTGAVGPPAEANTKPENSLASEEAIVAAAAAEAVALAKAALKGAQDAVMLVGYNNLNDSDNVGRGTLSEARTAPFESVHLAQPGETRRVGVCAELNGSEMKWTGSSLFRETLTDSDDLEPSPEELEILQSQLSNVIAVKSNRQTERKAKRAKSVEKAAANVVTVKSGSTSRKKRASVQDVDYSDPLRYLRGTTCSSRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWAAAAGVDQMTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLLTENGRHPNDAEVAEAAGLSMKRLAAVMLTPKAPRSLDQKIGFNESLKPSEVLADPEAETSEEILTKQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKFLQQYI 611
[Close]
BLAST of XM_017389916.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A059CEQ1 (RNA polymerase sigma factor {ECO:0000256|PIRNR:PIRNR000767})

HSP 1 Score: 654.44 bits (1687), Expect = 0.000e+0
Identity = 376/585 (64.27%), Postives = 447/585 (76.41%), Query Frame = 0
 
Query:    1 FSIHFKTHLQSFPSQPLKYRETIYSRVQCSATVTTVLDTPSLEAHSNSVAANRSWSESTSNAVLDLEKLHLASLEVHSNSVATDRPWTHISDMDPPSE----ATLPMENLLTSEEAVIAAAASEAVALARAAAKSAKDAAMINSHKNSTKIDVK--------------PTALTYEAVDSLSERPELTQLGVAGVSQISQSEGRSDVEEPTVEELQILQEELGKSIAVRSSRQPERKARRARAAEKASATVVSVKSGSMSKKKRAS-QEIDHSDPLRYLRQTTSSSKLLTATEEQELSEGIQALLRLEKIYKELSERYGGEPSFIQWASAAGVDQITLRRQINYGKFCKDKMIKSNVRLVISIAKNYLKSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPIYMVEAGYRVKEARQNLYNKNGRQASHEELAEATGLTMSRLSNVLLAPKPPRSLDQKIGFDLDLKPSDVIADPEAETSEELLIKELMRQDLNKVLDTLKPREKQVVRWRFGLDDGRMKTLQEIGEIMGVSRERIRQIELCAFRKLKNKRRTKSLQQYIIG 566
            FSI F+TH Q       K RET Y R QC  + T+    PS            + S + +  VLD+EKL L SLEV ++S  ++RPWT+   + PP+E    ATL  E LLTS+EAVIAAAASEAV LA+AA KSAK AA++  +++S+ ID K                 L  E  + L+E  E  + G+   + +  S  +S+  EPT EELQ+LQ +L KSIAVRS RQ ERK  R RAAEKA+A VVSVKSGS+SKKKRA+ QE+D+SDPLRYLR TTSSS+LLTATEE ELSEGIQ LL+LE++  EL+ER GGEP+F QWA+AAGVDQ TLR+++NYG+ CKDKMIKSN+RLVISIAKNY  +GMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLP +MVEA YRVKEAR+ LY++NGRQ  +EE+AEATGL+M RL+ VL+ PK PRSLDQKIG + +LKPS+VIADP AETSE++L+K+ MRQDL KVLDTL PREKQVVRWRFGL+DGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNK+RTK LQQY++ 
Sbjct:   28 FSIQFRTHAQ-------KNRETTYFRAQCLLSATS----PS------------TLSSAATAVVLDMEKLRLPSLEVLTDSPTSNRPWTYTGAVGPPAEVNLGATLATETLLTSDEAVIAAAASEAVTLAKAALKSAKHAALMIRNESSSNIDNKLELSSRTSTSLSKHAELLELEHSNILTELME-PEGGLREGNVMQYSTDKSEDLEPTHEELQLLQVQLFKSIAVRSRRQTERKEIRERAAEKAAANVVSVKSGSLSKKKRAALQEVDYSDPLRYLRGTTSSSRLLTATEETELSEGIQDLLKLERLQVELTERCGGEPAFAQWAAAAGVDQKTLRKRLNYGRLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGCEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDNEEVAEATGLSMKRLNAVLMTPKAPRSLDQKIGINQNLKPSEVIADPNAETSEDVLLKQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVLA 588
[Close]
BLAST of XM_017389916.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7ZD19 (RNA polymerase sigma factor {ECO:0000256|PIRNR:PIRNR000767})

HSP 1 Score: 646.351 bits (1666), Expect = 0.000e+0
Identity = 341/524 (65.08%), Postives = 423/524 (80.73%), Query Frame = 0
 
Query:   63 VLDLEKLHLASLEVHSNSVATDRPWTHISDMDPPS----EATLPMENLLTSEEAVIAAAASEAVALARAAAKSAKDAAMINSHKNSTKIDVKPTALTYEAVDSLSERPELTQLGVAGVSQISQSEG----------------RSDVEEPTVEELQILQEELGKSIAVRSSRQPERKARRARAAEKASATVVSVKSGSMSKKKRAS-QEIDHSDPLRYLRQTTSSSKLLTATEEQELSEGIQALLRLEKIYKELSERYGGEPSFIQWASAAGVDQITLRRQINYGKFCKDKMIKSNVRLVISIAKNYLKSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPIYMVEAGYRVKEARQNLYNKNGRQASHEELAEATGLTMSRLSNVLLAPKPPRSLDQKIGFDLDLKPSDVIADPEAETSEELLIKELMRQDLNKVLDTLKPREKQVVRWRFGLDDGRMKTLQEIGEIMGVSRERIRQIELCAFRKLKNKRRTKSLQQYII 565
            ++D+EKL + SLE HS SVA+DRP ++I    PP+    EATL ME+L+T +EA+IAAAA+EAVALA+ A + AKDAA++ + K+S++ +  P+  + E+     E+ +LT+     V +I  S G                 SD  + + EE ++LQ +L KSIAVRS RQ ER+ARRARA EKAS  V+SVKSG  S+K+RA+ Q+ID+SDPLRYLR TTS+S+LLTATEE ELSEGIQ LL+LEK+++EL+ER GG+P+F QWA+AAGVDQ TLR+++NYG  CKDKMIKSN+RLVISIAKNY  +GMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLP +MVEA YRV+EA++ LY++NGR   +EE+AEATGL+M RL+ VLL PK P SLDQKIG + D+KPS++IADP+AET+EELLIK+ M+QDL KVLD+L PREKQV+RWRFG++DGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKRRTK+LQQY+I
Sbjct:   62 LVDVEKLRMPSLESHSISVASDRPLSYIGATGPPTKASFEATLAMESLITGDEALIAAAAAEAVALAKEAVEVAKDAALMVNDKSSSESENGPSDFSSESHIFRLEKAQLTE--TQEVGRIDHSVGLESRQEEEQSVQFSNKDSDGLDSSDEEFKLLQMQLLKSIAVRSGRQTERQARRARAMEKASTNVLSVKSGHSSRKRRAALQDIDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLHEELAERCGGQPTFAQWAAAAGVDQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPISLDQKIGMNQDMKPSEIIADPDAETAEELLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKNLQQYVI 583
[Close]
BLAST of XM_017389916.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZE35 (RNA polymerase sigma factor {ECO:0000256|PIRNR:PIRNR000767})

HSP 1 Score: 645.195 bits (1663), Expect = 0.000e+0
Identity = 385/587 (65.59%), Postives = 455/587 (77.51%), Query Frame = 0
 
Query:    1 FSIHFKTHLQSFPSQPLKYRETIYSRVQCSATVTTVLDTPSLEAHSNSVAANRSWSESTSNAVLDLEKLHLASLEVHSNSVATDRPWTHISDMDPPSEAT----LPMENLLTSEEAVIAAAASEAVALARAAAKSAKDAAMINSHKNSTKIDVKPTALTYEAVDSLSERPELT------QLGVAGVSQISQSEGR-----------SDVEEPTVEELQILQEELGKSIAVRSSRQPERKARRARAAEKASATVVSVKSGSMSKKKRAS-QEIDHSDPLRYLRQTTSSSKLLTATEEQELSEGIQALLRLEKIYKELSERYGGEPSFIQWASAAGVDQITLRRQINYGKFCKDKMIKSNVRLVISIAKNYLKSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPIYMVEAGYRVKEARQNLYNKNGRQASHEELAEATGLTMSRLSNVLLAPKPPRSLDQKIGFDLDLKPSDVIADPEAETSEELLIKELMRQDLNKVLDTLKPREKQVVRWRFGLDDGRMKTLQEIGEIMGVSRERIRQIELCAFRKLKNKRRTKSLQQYII 565
            FS++F+ H  S  +Q  K RE IY R QC      +L T S    S S AA           VLD+EKL L SLE HSNSVAT RPWT+I  + PP EA     L  E L+TSEEAVIAAAA+EAVALA+AAAK AKDAAM+    +S+K+D KP   + EA     ER +L       Q+GV G S  +++  R           SD  EPT EEL++LQ +L  SI VRS+RQ ERK +RARAAEKA+A VVS+KSGS S+KKR+S Q+ID+SDPLRYLR TTS+S+LLT TEE++LSEGIQ LL+LEK+++EL+ER GG+P+F QWA+AAGVDQ TLR+++NYG  CKDKMIKSN+RLVISIAKNY  +GMNLQDLVQEGCRGLVRG+EKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLP +MVEA YRVKEAR+ LYN+NGR  ++EE+AEATGL+M RL+ VLL PK PRSLDQKIG +++L+PS+VI+DP+AETSE+LL K+ M+QDL KVL+TL PREKQVVRWRFGL DGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKRRTK LQQYII
Sbjct:   15 FSVNFRAHHHS-NTQSSKSREPIYFRTQC------ILSTAS---PSTSAAAT---------TVLDMEKLQLPSLEAHSNSVATGRPWTYIGAVGPPMEANYKAALATETLITSEEAVIAAAAAEAVALAKAAAKVAKDAAMMVGDNHSSKLDSKPAFFSSEANYFQFERTQLARLTPTEQIGVIGESLGAETGIREFHSMQHPIKESDDLEPTHEELKLLQAQLSYSIDVRSNRQTERKTKRARAAEKAAANVVSIKSGSTSRKKRSSLQDIDYSDPLRYLRGTTSTSRLLTTTEERQLSEGIQVLLKLEKLHEELTERCGGQPTFTQWAAAAGVDQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGSEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYNENGRHPNNEEIAEATGLSMRRLTAVLLTPKAPRSLDQKIGNNMNLRPSEVISDPDAETSEDLLTKQFMKQDLEKVLNTLNPREKQVVRWRFGLADGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYII 582
[Close]
BLAST of XM_017389916.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9I5X5 (RNA polymerase sigma factor {ECO:0000256|PIRNR:PIRNR000767})

HSP 1 Score: 645.195 bits (1663), Expect = 0.000e+0
Identity = 374/600 (62.33%), Postives = 447/600 (74.50%), Query Frame = 0
 
Query:    1 FSIHFKTHLQSFPSQ-PLKYRETIYSRVQC--SAT-------VTTVLD------TPSLEAHSNSVAANRSWSESTSNA---VLDLEKLHLASLEVHSNSVATDRPWTHISDMDPPSEATLPM----ENLLTSEEAVIAAAASEAVALARAAAKSAKDAAMINSHKNSTKIDVKPTALTYEAVDSLSER-------------PELTQLGVAGVSQISQSEGRSDVEEPTVEELQILQEELGKSIAVRSSRQPERKARRARAAEKASATVVSVKSGSMSKKKRASQEIDHSDPLRYLRQTTSSSKLLTATEEQELSEGIQALLRLEKIYKELSERYGGEPSFIQWASAAGVDQITLRRQINYGKFCKDKMIKSNVRLVISIAKNYLKSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPIYMVEAGYRVKEARQNLYNKNGRQASHEELAEATGLTMSRLSNVLLAPKPPRSLDQKIGFDLDLKPSDVIADPEAETSEELLIKELMRQDLNKVLDTLKPREKQVVRWRFGLDDGRMKTLQEIGEIMGVSRERIRQIELCAFRKLKNKRRTKSLQQYI 564
            F+++FK+  QS PS    K RE I  R QC  S T        TTVL+      +P LEA  NSV   RSW++ TS A   VL LEKL   SL+ H   +A  +PWT++  + PPSE  L      E+L+TSEEAVI+AAASEA+ALA+AA K AKDAAM+ SH  S K   +   +  +   S+ E+             P+  ++G+      S     SD  EP+ +EL+ L+ +L KSIAVRS RQ ERKARR RAAEKA+A VVSVKSGS  KK+ A QE+D+SDPLRYLR TTSSS+LLT++EEQ LSEGIQ LL+LE++ +EL +R GG+P+F QWA+AA VDQ TLR+QINYG  CKDKMIKSN+RLVISIAKNY  +GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLP +MVEA YRVKEAR+ LY++NGR    EE+A+ATGL+M RLS V+L PK PRSLDQK+G + DLKPS+VIADP+AETSE+LLIK+ M+QDL KVLD+L PREKQV++WRFGL+DGRMKTLQEIGE MGVSRERIRQIE CAFRKLKNK+RTK L QY+
Sbjct:   15 FAVNFKS--QSNPSVFSSKSREAINFRTQCILSTTSPPTLTAATTVLEYEKLQLSP-LEAIPNSVPPGRSWTKPTSTANSSVLHLEKL--PSLDTHPIPIAASKPWTYVGAVGPPSEVNLSTNLDKESLITSEEAVISAAASEALALAKAAVKVAKDAAMMVSHHKSIKPGSRTRRILSDVDTSIFEKSQLADPVQRVVGGPKAAEIGLGEKYPASYPLSESDDVEPSAKELEFLEAQLSKSIAVRSKRQTERKARRTRAAEKAAANVVSVKSGSSRKKRSAVQEVDYSDPLRYLRGTTSSSRLLTSSEEQVLSEGIQVLLKLERLQEELKQRCGGQPTFAQWAAAACVDQKTLRKQINYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRLPDDEEVAQATGLSMKRLSAVMLTPKAPRSLDQKVGINQDLKPSEVIADPDAETSEDLLIKQFMKQDLAKVLDSLSPREKQVIKWRFGLEDGRMKTLQEIGEAMGVSRERIRQIESCAFRKLKNKKRTKHLLQYV 609
Match NameStatsDescription
A0A6P4B029E-Value: 0.000e+0, PID: 63.25RNA polymerase sigma factor {ECO:0000256|PIRNR:PIR... [more]
A0A5B6ZZE0E-Value: 0.000e+0, PID: 66.95RNA polymerase sigma factor {ECO:0000256|PIRNR:PIR... [more]
A0A5B6ZYY3E-Value: 0.000e+0, PID: 66.78RNA polymerase sigma factor {ECO:0000256|PIRNR:PIR... [more]
A0A6N2BUR2E-Value: 0.000e+0, PID: 61.54RNA polymerase sigma factor {ECO:0000256|PIRNR:PIR... [more]
A0A3Q7F260E-Value: 0.000e+0, PID: 61.37RNA polymerase sigma factor {ECO:0000256|PIRNR:PIR... [more]
M1D2M3E-Value: 0.000e+0, PID: 61.37RNA polymerase sigma factor {ECO:0000256|PIRNR:PIR... [more]
A0A059CEQ1E-Value: 0.000e+0, PID: 64.27RNA polymerase sigma factor {ECO:0000256|PIRNR:PIR... [more]
A0A1U7ZD19E-Value: 0.000e+0, PID: 65.08RNA polymerase sigma factor {ECO:0000256|PIRNR:PIR... [more]
A0A5J4ZE35E-Value: 0.000e+0, PID: 65.59RNA polymerase sigma factor {ECO:0000256|PIRNR:PIR... [more]
A0A2G9I5X5E-Value: 0.000e+0, PID: 62.33RNA polymerase sigma factor {ECO:0000256|PIRNR:PIR... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.