XM_017388632.1

Resource Type: 
Polypeptide
Name: 
XM_017388632.1
Identifier: 
XM_017388632.1-protein
Sequence: 
MSSCLSGGGRTYGFDLDIVKSTSTSSRTSHSSSPSSTLSESSNSPITILH
RKPRTPRKRPNQTYNEAALLLSTAYPKIFPTKHLTKLCKSSKLYSSFVDE
AQELLLPFRTIDNSGFLLHQPILEKRILGLVPKVVDSCERVCHSPQDSDL
CGNSLEICDEHQDDFDAESILDEEIEEGIDSIMGNLSVNNDSASDESTST
TCIGYPLGLGFSGNFDYGFGMRGGGVRALRDADESNWWSFPAVDVADITP
NFKKTPSAAAQKKKKKVKKIVELKYLDSPPVHNPVAAEEELPMLSGGPRL
KLNYDKVSEAWSDRRSTSDIYVGLSTSTSSRKSRSKKVQTISI
Sequence Length: 
343
Sequence Checksum: 
824c1a7078e913fc6c1465cb6ff7773c
View location in JBrowse: 
DCARv2_Chr4:20002585..20003616+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017388632.1, derives from mRNA, XM_017388632.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017388632.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017388632.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1UKD7 ((Protein CHLOROPLAST IMPORT APPARATUS 2 {ECO:0000313|EMBL:KAB1200257.1}))

HSP 1 Score: 320.087 bits (819), Expect = 5.873e-104
Identity = 196/330 (59.39%), Postives = 227/330 (68.79%), Query Frame = 0
 
Query:    1 MSSCLSGG-GRTYGFDLDIVKSTSTSSRTSHSSSPSSTLSESSNSPITILHRKPRTPRKRPNQTYNEAALLLSTAYPKIFPTKHLTKLCKSSKLYSSFVDEAQELLLPFRTIDNSGFLLHQPILEKRILGLVPKVVDSCERVCHSPQDSDLCGNSLEICDEHQDDFDAESILDEEIEEGIDSIMGNLSVNNDSASDESTSTT----------CIG--YPLGLGFSGNFDYGFGMRG-GGVRALRDADESNWWSFPAVDVADITPNFKKTPSAAAQKKKKKVKKIVELKYLDSPPVHNPVAAEEELPMLSGGPRLKLNYDKVSEAWSDRRS 316
            MS+CLSGG GRTY  DLDIVKS STS+R+S +SSPSSTLSE+SNSP+ I  RKPRTPRKRPNQTYNEAA LLSTAYP IF TKHL K  K +K + SF+DE+ ELLLPFR ID+S FLLHQPILEK    +  KV + CE+ C SP + +   N +E CD +++DFDAESILDEEIEEGIDSIMG+LSV+ D   DE  + +          C G   P+GLGF GNF  G GMR  GGVRALR  DE NWW FP VDV  I+P F K P +A +KKKK  K + ELK          +A E E P    G  LKLN+DKV  AWSDR S
Sbjct:    1 MSACLSGGSGRTYALDLDIVKSPSTSTRSSQTSSPSSTLSEASNSPLAICTRKPRTPRKRPNQTYNEAAALLSTAYPNIFSTKHLAKPRKYTKQHDSFLDESPELLLPFRAIDSSAFLLHQPILEKPSFPIQSKVANFCEKPCQSPGEVEFHRNPVESCDGYEEDFDAESILDEEIEEGIDSIMGDLSVDTDLV-DECKAGSFSCGRGQRHLCYGNPIPMGLGFGGNFPLGCGMRSRGGVRALRHVDEENWWGFPVVDVRQISPKFHKAPVSAEKKKKKVEKSLSELK-------DKEMAKENEAPKPKPGLLLKLNFDKVLNAWSDRGS 322
[Close]
BLAST of XM_017388632.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4E0I8 ((Uncharacterized protein {ECO:0000313|EMBL:THG09302.1}))

HSP 1 Score: 298.901 bits (764), Expect = 2.125e-97
Identity = 197/357 (55.18%), Postives = 236/357 (66.11%), Query Frame = 0
 
Query:    1 MSSCLSGGGRTYGFDLDIVKSTSTSSRTSHSSSPSSTLSESSNSPITILHRKPRTPRKRPNQTYNEAALLLSTAYPKIFPTKHLTKLCKSSKL----YSSFVDEAQELLLPFRTIDNSGFLLHQPILEK---RILGLVPKVVDSCERVCHSPQDSDLCGNSLEICDEHQDDFDAESILDEEIEEGIDSIMGNLSVN-NDSASDESTST--------TCIGYPLGLGFSGNFDYGFGMRGGGVRALRDADES-NWWSFPAVDVADITPNFKKTPSAAAQKKKKKVKKIVELKYLDSPPVHNPVAAEEELPMLSGGPRLKLNYDKVSEAWSDR--------------RSTSDIYVGLST 326
            MSSCLSGG R YGFDL+IVKS STS+R SHSSSPSSTLSESSNSP+ I  RKPRTPRKRPN+TYNEAA LLSTAYP IF TKHLTK CK +KL    + +F++++ +LLLPFR  DNSGFLLHQPI EK   R     P+VV SCE+ C SP +++      E     Q+DFDAESILDEEIEEGIDSIMGNLSV+ ND + DES  +        +C G+P+GLGF G FD GFGMR  GVRALR  DE  +WW FP VDV +I+P   K P+   +KK +K  +  E +  +S P  NP            G  LKLNYD+V  AWS+R               S +D++VG S+
Sbjct:    1 MSSCLSGGSRAYGFDLEIVKSPSTSTRISHSSSPSSTLSESSNSPLAISTRKPRTPRKRPNETYNEAAALLSTAYPSIFSTKHLTKPCKFTKLHPHPHDTFLNQS-DLLLPFRVFDNSGFLLHQPIPEKPNFRFETTSPRVVSSCEKPCQSPVENEF---QAEDSFNLQEDFDAESILDEEIEEGIDSIMGNLSVSVNDESMDESNVSSSYSGQINSCYGHPIGLGFGGKFDVGFGMRRRGVRALRHVDEERDWWRFPTVDVVEISPKLSKAPAEKKKKKIEKPVEEKENEKENSIPKSNP------------GLLLKLNYDEVVNAWSNRGSPFSEEIPFPASEMSRNDLHVGFSS 341
[Close]
BLAST of XM_017388632.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835D6Q4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8392808.1}))

HSP 1 Score: 301.597 bits (771), Expect = 4.284e-97
Identity = 197/349 (56.45%), Postives = 232/349 (66.48%), Query Frame = 0
 
Query:    1 MSSCLSGGGRTYGFDLDIVKSTSTSSRTSHSSSPSSTLSESSNSPITILHRKPRTPRKRPNQTYNEAALLLSTAYPKIFPTKHLTKLCKSSKLYSSFVDEAQELLLPFRTIDNSGFLLHQPILEKRILGLVPKVVDSCERVCHSPQDSDLCGNSLEICDEHQDDFDAESILDEEIEEGIDSIMGNLSVNNDSASDESTS------TTCIGYPLGLGFSGNFDYGFGMRGGGVRALRDADESNWWSFPAVDVADITPNFKKTPSAAAQKKKKKVKKIVELKYLDSPPVHNPVAAEEELPMLSGGPRLKLNYDKVSEAWSDRRST-SDIYVGLSTSTSSRKSRSKKVQTIS 342
            MSSCLSGGGRTYGF+LDIVKS STS+RTSHSSSPSSTLSESSNSP+ I  RKPRTPRKRPNQTYNEAA LLST YP IF  KHL K CK +K Y SF +E+ ELL PF ++DN+GFLLHQP+ EK    +  K  ++ E+ C SP D D   NS      +++DFDAESILDEEIEEGIDSIMGNLSV+NDS  D   S          G P+GLGF G  ++GFGMR  GVRALR  DE +WW FP VDV  I+P F K  S   +KKKK  ++  +LK   S       + E  +P L  G  LKLNY++V  AWSDR S  SD   G  +S S   +R  ++   S
Sbjct:    1 MSSCLSGGGRTYGFELDIVKSPSTSTRTSHSSSPSSTLSESSNSPLVISTRKPRTPRKRPNQTYNEAAALLSTIYPNIFSIKHLRKPCKHTKPYDSFSEESSELLPPFPSLDNAGFLLHQPVPEKPNFRIESKPANAAEKPCQSPIDMDFQMNSTSPFSAYEEDFDAESILDEEIEEGIDSIMGNLSVSNDSYDDSYASCYNGQLNHHYGNPMGLGFGGKLEFGFGMR-RGVRALRQIDEGDWWRFPTVDVLQISPRFNKISSEKKKKKKKVEQQEEDLKSFGS-------SQENSMPNL--GLSLKLNYEEVLNAWSDRGSPFSDEIPGADSSESDPLARLAQIDLFS 339
[Close]
BLAST of XM_017388632.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4FY93 ((protein CHLOROPLAST IMPORT APPARATUS 2-like {ECO:0000313|RefSeq:XP_018836611.1}))

HSP 1 Score: 296.59 bits (758), Expect = 9.000e-96
Identity = 194/331 (58.61%), Postives = 229/331 (69.18%), Query Frame = 0
 
Query:    1 MSSCLSGG-GRTYGFDLDIVKSTSTSSRTSHSSSPSSTLSESSNSPITILHRKPRTPRKRPNQTYNEAALLLSTAYPKIFPTKHLTKLCKSSKLYSSFVDEAQELLLPFRTIDNSGFLLHQPILEKRILGLVPKVVDSCERVCHSPQDSDLCGNSLEICDEHQDDFDAESILDEEIEEGIDSIMGNLSVNNDSASD----------ESTSTTCIGYPLGLGFSGNFDYGFGMR-GGGVRALRDADESNWWSFPAVDVADITPNFKK-TPSAAAQKKKKKVKK--IVELKYLDSPPVHNPVAAEEELPMLSGGPRLKLNYDKVSEAWSDRRS 316
            MSSCLSGG GRTY  DLDIVKS STSSRTS +SSPSSTLSESSNSP+TI  RK RTPRKRPNQTYNEAA LLSTAYP IF  K+LTK  K +K + SF+D++ ELLLPFR  D+S FLLHQPI EK    +  KV + C++ C SP + D   +SLE+CD +++DFDAESILDEEIEEGIDSIMGNLSV+ D   D          +  S      P+GLGF G FD GFGMR  GGVRALR  DE NWW FP VDV  I+P F K + S   +KKKKKV+K  +VELK  + P  ++        P  + G  LKLN+++V  AWS+R S
Sbjct:    1 MSSCLSGGSGRTYALDLDIVKSLSTSSRTSQTSSPSSTLSESSNSPLTICTRKSRTPRKRPNQTYNEAAALLSTAYPNIFSAKNLTKPRKFTKQHDSFLDDSPELLLPFRVTDSSAFLLHQPIQEKPSCQIQSKVTNFCDKPCQSPGEVDFHASSLELCDGYEEDFDAESILDEEIEEGIDSIMGNLSVDTDMVDDFNAGSSYGSGQKISWYGNSIPVGLGFGGKFDLGFGMRINGGVRALRHVDEGNWWGFPIVDVHQISPRFHKASVSTEKKKKKKKVEKLSVVELKEKELPKENSAS------PKPNSGLLLKLNFEEVLNAWSNRGS 325
[Close]
BLAST of XM_017388632.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZRR7 (CCT domain-containing protein {ECO:0000259|PROSITE:PS51017})

HSP 1 Score: 296.59 bits (758), Expect = 9.255e-96
Identity = 202/320 (63.12%), Postives = 237/320 (74.06%), Query Frame = 0
 
Query:    1 MSSCLSGGGRTYGFDLDIVKSTSTSSRTSHSSSPSSTLSESSNSPITILHRKPRTPRKRPNQTYNEAALLLSTAYPKIFPTKHLTKLCKSSKLYSSFVDEAQELLLPFRTIDNSGFLLHQPILEKRILGLVPKVVDSCERVCHSPQDSDLCGNSLEICDEHQDDFDAESILDEEIEEGIDSIMGNLSVNNDSASDESTSTTCIG--YPLGLGFSGNFDYGFGMRGGGVRALRDADESNWWSFPAVDVADITPNFKKTPSAAAQKKKKKVKKIVELKYLDSPPVHNPVAAEEELPMLSGGPR--LKLNYDKVSEAWSDRRS 316
            M SCLSG GR YGFDL+IVK + TSS TS+SSSPSSTLSESSNSP+ I  RKPRTPRKRPNQTYNEAA LLSTAYP IF TKHLTK CK +K + SF+DE+ ELLLPFR IDNSGFLL QPI EK    L  K V+S E+ C SP  +D   NSL++CD +Q+DFDAES+LDEEIEEGIDSIMGNLSVNND ++ +   ++C G  +P GLGF G FD+GFGMR  GVRALR+ DE NWW FP VDVA I+P F K   +  +KKKKK++K  ELK  +SP  ++   + EE       PR  LKLNYD+V  +WSDR S
Sbjct:    1 MCSCLSGAGRAYGFDLEIVKPSPTSSLTSNSSSPSSTLSESSNSPLAISTRKPRTPRKRPNQTYNEAAALLSTAYPNIFSTKHLTKSCKFTKPHDSFLDESSELLLPFRVIDNSGFLL-QPIQEKPNFRLELKAVNSFEKPCQSPLGNDFHANSLDLCDGYQEDFDAESMLDEEIEEGIDSIMGNLSVNNDESNSDQIISSCYGHTHPFGLGFGGKFDFGFGMR-RGVRALRNVDEGNWWRFPPVDVASISPKFNKV--SVEKKKKKKIEKPAELKISESPQENSIPKSPEENSTQKSNPRLLLKLNYDEVLNSWSDRGS 316
[Close]
BLAST of XM_017388632.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HPT4 (CCT domain-containing protein {ECO:0000259|PROSITE:PS51017})

HSP 1 Score: 296.59 bits (758), Expect = 1.035e-95
Identity = 195/360 (54.17%), Postives = 236/360 (65.56%), Query Frame = 0
 
Query:    1 MSSCLSGGGRTYGFDLDIVKSTSTSSRTSHSSSPSSTLSESSNSPITILHRKPRTPRKRPNQTYNEAALLLSTAYPKIFPTKHLTKLCKSSKL----YSSFVDEAQELLLPFRTIDNSGFLLHQPILEK---RILGLVPKVVDSCERVCHSPQDSDLCGNSLEICDEHQDDFDAESILDEEIEEGIDSIMGNL--SVNNDSASDESTST-------TCIGYPLGLGFSGNFDYGFGMRGGGVRALRDADES-NWWSFPAVDVADITPNFKKTPSAAAQKKKKKVKKIVELKYLDSPPVHNPVAAEEELPMLSGGPRLKLNYDKVSEAWSDRRSTSDIYVGLSTSTSSRKSRSKKVQTISI 343
            MSSCLSGG R YGFDL+IVKS STS+R SHSSSPSSTLSESSNSP+ I  RKPRTPRKRPN+TYNEAA LLSTAYP IF TKHLTK CK +KL    + +F++++ +LLLPFR  DNSGFLLHQPI EK   R     P+VV+S E+ C SP +++      E     Q+DFDAESILDEEIEEGIDSIMGNL  SVNN+S  + + S+       +C G+P+GLGF G FD GFGMR  GVRALR  DE  +WW FP VDV +I+P   K P+   +KK +K  +  E +  +S P  NP            G  LKLNYD+V  AWS+R S     +    S  SR     ++  I +
Sbjct:    1 MSSCLSGGSRAYGFDLEIVKSPSTSTRISHSSSPSSTLSESSNSPLAISTRKPRTPRKRPNETYNEAAALLSTAYPSIFSTKHLTKPCKFTKLHPHPHDTFLNQS-DLLLPFRVFDNSGFLLHQPIPEKPNFRFETTSPRVVNSREKPCQSPVENEFQA---EDSFNLQEDFDAESILDEEIEEGIDSIMGNLSVSVNNESMDESNVSSSYSGQINSCYGHPIGLGFGGKFDVGFGMRRRGVRALRHVDEERDWWRFPTVDVVEISPKLSKAPAEKKKKKIEKPVEEKENEKENSIPKSNP------------GLLLKLNYDEVVNAWSNRGSPFSEEIPFPASEMSRNDLHARMAQIEL 344
[Close]
BLAST of XM_017388632.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A833UQS1 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5456389.1}))

HSP 1 Score: 295.819 bits (756), Expect = 2.668e-95
Identity = 194/331 (58.61%), Postives = 229/331 (69.18%), Query Frame = 0
 
Query:    1 MSSCLSGG-GRTYGFDLDIVKSTSTSSRTSHSSSPSSTLSESSNSPITILHRKPRTPRKRPNQTYNEAALLLSTAYPKIFPTKHLTKLCKSSKLYSSFVDEAQELLLPFRTIDNSGFLLHQPILEKRILGLVPKVVDSCERVCHSPQDSDLCGNSLEICDEHQDDFDAESILDEEIEEGIDSIMGNLSVNNDSASD----------ESTSTTCIGYPLGLGFSGNFDYGFGMR-GGGVRALRDADESNWWSFPAVDVADITPNFKK-TPSAAAQKKKKKVKK--IVELKYLDSPPVHNPVAAEEELPMLSGGPRLKLNYDKVSEAWSDRRS 316
            MSSCLSGG GRTY  DLDIVKS STSSRTS +SSPSSTLSESSNSP+TI  RK RTPRKRPNQTYNEAA LLSTAYP IF  K+LTK  K +K + SF+D++ ELLLPFR  D+S FLLHQPI EK    +  KV + C++ C SP + D   +SLE+CD +++DFDAESILDEEIEEGIDSIMGNLSV+ D   D          +  S      P+GLGF G FD GFGMR  GGVRALR  DE NWW FP VDV  I+P F K + S   +KKKKKV+K  +VELK  + P  ++        P  + G  LKLN+++V  AWS+R S
Sbjct:    1 MSSCLSGGSGRTYALDLDIVKSLSTSSRTSQTSSPSSTLSESSNSPLTICTRKSRTPRKRPNQTYNEAAALLSTAYPNIFSAKNLTKPRKFTKQHDSFLDDSPELLLPFRVTDSSAFLLHQPIQEKPSCQIQSKVTNFCDKPCQSPGEVDFHASSLELCDGYEEDFDAESILDEEIEEGIDSIMGNLSVDTDMVDDFNAGSSYGSGQKISWYGNSIPVGLGFGGKFDLGFGMRINGGVRALRHVDEGNWWGFPIVDVHQISPRFHKASVSTEKKKKKKKVEKLSVVELKEKELPKENSAS------PKPNSGLLLKLNFEEVLNAWSNRGS 325
[Close]
BLAST of XM_017388632.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZUT4 (CCT domain-containing protein {ECO:0000259|PROSITE:PS51017})

HSP 1 Score: 294.278 bits (752), Expect = 5.847e-95
Identity = 201/320 (62.81%), Postives = 236/320 (73.75%), Query Frame = 0
 
Query:    1 MSSCLSGGGRTYGFDLDIVKSTSTSSRTSHSSSPSSTLSESSNSPITILHRKPRTPRKRPNQTYNEAALLLSTAYPKIFPTKHLTKLCKSSKLYSSFVDEAQELLLPFRTIDNSGFLLHQPILEKRILGLVPKVVDSCERVCHSPQDSDLCGNSLEICDEHQDDFDAESILDEEIEEGIDSIMGNLSVNNDSASDESTSTTCIG--YPLGLGFSGNFDYGFGMRGGGVRALRDADESNWWSFPAVDVADITPNFKKTPSAAAQKKKKKVKKIVELKYLDSPPVHNPVAAEEELPMLSGGPR--LKLNYDKVSEAWSDRRS 316
            M SCLSG GR YGFDL+IVK + TSS TS+SSSPSSTLSESSNSP+ I  RKPRTPRKRPNQ YNEAA LLSTAYP IF TKHLTK CK +K + SF+DE+ ELLLPFR IDNSGFLL QPI EK    L  K V+S E+ C SP  +D   NSL++CD +Q+DFDAES+LDEEIEEGIDSIMGNLSVNND ++ +   ++C G  +P GLGF G FD+GFGMR  GVRALR+ DE NWW FP VDVA I+P F K   +  +KKKKK++K  ELK  +SP  ++   + EE       PR  LKLNYD+V  +WSDR S
Sbjct:    1 MCSCLSGAGRAYGFDLEIVKPSPTSSLTSNSSSPSSTLSESSNSPLAISTRKPRTPRKRPNQIYNEAAALLSTAYPNIFSTKHLTKSCKFTKPHDSFLDESSELLLPFRVIDNSGFLL-QPIQEKPNFRLELKAVNSFEKPCQSPLGNDFHANSLDLCDGYQEDFDAESMLDEEIEEGIDSIMGNLSVNNDESNSDQIISSCYGHTHPFGLGFGGKFDFGFGMR-RGVRALRNVDEGNWWRFPPVDVASISPKFNKV--SVEKKKKKKIEKPAELKISESPQENSIPKSPEENSTQKSNPRLLLKLNYDEVLNSWSDRGS 316
[Close]
BLAST of XM_017388632.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6RA90 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8056708.1}))

HSP 1 Score: 289.271 bits (739), Expect = 2.767e-92
Identity = 200/353 (56.66%), Postives = 235/353 (66.57%), Query Frame = 0
 
Query:    1 MSSCLSGG-GRTYGFDLDIVKSTSTSSRTSHSSSPSSTLSESSNSPITILHRKPRTPRKRPNQTYNEAALLLSTAYPKIFPTKHLTKLCKSSKLYSSFVDEAQELLLPFRTIDNSGFLLHQPILEKRILGLVPKVVDSCERVCHSPQDSDLCGNSLEICDEHQDDFDAESILDEEIEEGIDSIMGNLSVNNDSASDESTSTTCIG------YPLGLGFSGNFD-YGFGMRGGGVRALRDADESNWWSFPAVDVADITPNFKKTPSAAAQKKKKKVK--KIVELKYLDSPPVHNPVAAEEELPMLSGGPRLKLNYDKVSEAWSDRRST-SDIYVGLSTSTSSRKSRSKKVQTIS 342
            MSSCLSGG GRTY  DLDI+KS STS+RTSHSSSPSSTLSESSNSP+ I  RKPRT RKRPNQTYNEAA LLSTAYP IF  KHLTK  K +  + SF+ E+ ELLLPFR ID+SGFLLHQPI EK    +  KV + CE+ C SP + D   NSLE+CD +++DFDAESILDEEIEEGIDSIMGNLSV  D+  D  +    I        P+GLGF G F+      RGGGVRALR  DE NWWSFP VDV  I+P F +  S +A+KKKKKV+  + +ELK  + P        E   P  + G  LKLN+D V  AWSDR S  SD + G     +   +R  ++   S
Sbjct:    1 MSSCLSGGSGRTYALDLDIIKSPSTSTRTSHSSSPSSTLSESSNSPLAISTRKPRTSRKRPNQTYNEAAALLSTAYPNIFSPKHLTKPRKFTAQHDSFLAESSELLLPFRVIDSSGFLLHQPIQEKPSFQIQSKVANFCEKPCQSPGEVDFQANSLELCDGYEEDFDAESILDEEIEEGIDSIMGNLSVGTDAVDDSCSGGQKINSWYGNPIPMGLGFGGKFEMGFGMRRGGGVRALRHVDEGNWWSFPVVDVRQISPKFHRHSSGSAEKKKKKVEKPQAMELKNKELP-------KENSTPKPNPGLLLKLNFDDVLNAWSDRGSPFSDDFPGFELPGNDVSARLAQIDLFS 346
[Close]
BLAST of XM_017388632.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7DSV1 ((Chloroplast import apparatus 2 putative isoform 2 {ECO:0000313|EMBL:KAF5749391.1}))

HSP 1 Score: 283.493 bits (724), Expect = 6.895e-92
Identity = 161/317 (50.79%), Postives = 199/317 (62.78%), Query Frame = 0
 
Query:    3 SCLSGGGRTYGFDLDIVKSTSTSSRTSHSSSPSSTLSESSNSPITILHRKPRTPRKRPNQTYNEAALLLSTAYPKIFPTKHLTKLCKSSKLYSSFVDEAQELLLPFRTIDNSGFLLHQPILEKRILGLVPKVVDSCERVCHSPQDSDLCGNSLEICDEHQDDFDAESILDEEIEEGIDSIMGNLSV---NNDSASDESTSTTCIGYPLGLGFSGNFDYGFGMRGGGVRALRDADESNWWSFPAVDVADITPNFKKTPSAAAQKKKKKVKKIVELKYLDSPPVHNPVAAEEELPMLSGGPRLKLNYDKVSEAWSDRRS 316
            SCLSG GR YG DL++VKS STS+RTS  SSPSST+++SS+SP+ I  RKPRTPRKRPNQTYNEAA LLST YP IF  KHL+K  K  + +    +E+ EL LPFR  DN GFLLH P+ EK    +  K+       C S  + D  GNS+ + +E+ +DFD ESILDEEIEEGIDSIMGNLS    NND+  +          P+GLG   N  YGFG++  G+RA R  +  NWWSFP +DV  ++P      ++ ++  +KK K  VELK        NP   EE    L  G  LKLNYD+V  AWSDR S
Sbjct:    2 SCLSGSGRAYGLDLELVKSPSTSTRTSQKSSPSSTITKSSDSPLAITTRKPRTPRKRPNQTYNEAAALLSTVYPNIFSIKHLSKPHKFIRPHEPSFEESSELFLPFRVFDNCGFLLHHPVPEKPNSQIESKLASLS---CQSSGEIDFRGNSIGLGEEYSEDFDTESILDEEIEEGIDSIMGNLSTSSSNNDNGGNP--------IPIGLGLGRNLGYGFGVK-RGIRAFRHINNGNWWSFPTIDVHQLSPRINNNSNSNSKSGEKKKK--VELK--------NPELTEENSANL--GLLLKLNYDEVLNAWSDRGS 294
Match NameStatsDescription
A0A6A1UKD7E-Value: 5.873e-104, PID: 59.39(Protein CHLOROPLAST IMPORT APPARATUS 2 {ECO:00003... [more]
A0A4S4E0I8E-Value: 2.125e-97, PID: 55.18(Uncharacterized protein {ECO:0000313|EMBL:THG0930... [more]
A0A835D6Q4E-Value: 4.284e-97, PID: 56.45(Uncharacterized protein {ECO:0000313|EMBL:KAF8392... [more]
A0A2I4FY93E-Value: 9.000e-96, PID: 58.61(protein CHLOROPLAST IMPORT APPARATUS 2-like {ECO:... [more]
A0A5B6ZRR7E-Value: 9.255e-96, PID: 63.13CCT domain-containing protein {ECO:0000259|PROSITE... [more]
A0A7J7HPT4E-Value: 1.035e-95, PID: 54.17CCT domain-containing protein {ECO:0000259|PROSITE... [more]
A0A833UQS1E-Value: 2.668e-95, PID: 58.61(Uncharacterized protein {ECO:0000313|EMBL:KAF5456... [more]
A0A5B6ZUT4E-Value: 5.847e-95, PID: 62.81CCT domain-containing protein {ECO:0000259|PROSITE... [more]
A0A5N6RA90E-Value: 2.767e-92, PID: 56.66(Uncharacterized protein {ECO:0000313|EMBL:KAE8056... [more]
A0A7J7DSV1E-Value: 6.895e-92, PID: 50.79(Chloroplast import apparatus 2 putative isoform 2... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.