MNLPPKEYLAAEGSTMYVDHQFSQSQNSGDHLQYSYRPQQVTTSGGSGMM
WFGGGGDGGGIGSGGVISYGVNSSSPSYSSGSSSSGQKRTRSDQESSVTT
QFPGQQLPKLQRGISQDSSSLSSVKEEPDGIAPAAADATPPPAAEIDQSA
QPGASYERRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAY
DEAALRFRGSRAKLNFPENVRMIPPPLAPPPQPRMANSSSSAFHQPAPFL
SQQFEASDTLKDYFEYSRLLQSSGDLQLHQQPNLLHQMLNVPTAPTQSFG
GSFSSQSSVTMLNSPFGQPFPNQQIAGLFQRPAAGTRGEGSSQDFPATSS
RMPGQYFPPSSSN
| Relationships |
|---|
| The polypeptide, XM_017392032.1, derives from mRNA, XM_017392032.1. |
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
Match: A0A5B7AM71 (AP2/ERF domain-containing protein {ECO:0000259|PROSITE:PS51032} (Fragment))
HSP 1 Score: 176.022 bits (445), Expect = 8.575e-49
Identity = 141/293 (48.12%), Postives = 173/293 (59.04%), Query Frame = 0
Query: 86 GQKRTRSDQESSVTTQFPGQQLPKLQRGISQ------DSSSLSSVKEEPDGIAPAAADATP---PPAAEIDQSAQPGASYERRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGSRAKLNFPENVRMIPPPLAPPPQPRMANSSSSAFHQPAPFLSQQFEASDTLKDYFEYSRLLQSSGDLQLHQQP---NLLHQML------NVPTAPTQSFGGSFSSQSSVTMLNSPFGQPFPNQQIAGLFQRPAAGTRGEGSSQDFPATSSRMPGQYFPPS 360
GQKR R ++ TQF + + RG S+ DSSS+S+V EE I TP PP+ E + G +R+YRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRG+RAKLNFPENVR++PPP P SS + PA F + + SD +DY+EYS+LLQS+GD + Q P +LLHQM ++ T S S + SSV+ S + FP+QQ FQ P + +G GS+ FPA G Y PPS
Sbjct: 119 GQKRGREEER---VTQF-SDPIQGVYRGFSEFRGSHGDSSSISTVPEEATNIV-TPTSTTPISQPPSTETASHEETGE--RKRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGNRAKLNFPENVRLLPPPQVSPATHLPIASSPATPSPPAFFPTHPSQGSDIARDYWEYSQLLQSTGDFHVQQPPPPTSLLHQMFYASSLASLHTQSLASSASSSFASSSVSSSTSSYPLLFPDQQQTRYFQPPGSQNQGGGSA--FPAPPWTGSGHY-PPS 401
Match: A0A251VGN2 ((Putative DNA-binding domain-containing protein {ECO:0000313|EMBL:OTG34333.1}))
HSP 1 Score: 169.474 bits (428), Expect = 1.932e-46
Identity = 145/302 (48.01%), Postives = 176/302 (58.28%), Query Frame = 0
Query: 85 SGQKRTRSDQESSVTTQFPGQQLPKLQRGISQ---DSSSLSSVKEEPDGIAP-------AAADATPP---PAAEIDQSAQPGASYERRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGSRAKLNFPENVRMIP-PPLAPPPQPRMANSSSSAF--HQPAPFLSQQFEASD--TLKDYFEYSRLLQSSGDL---QLHQQPNLLHQMLNVPTAPTQSFGGSFSSQS---SVTMLNSPFGQPFPNQQIAGL-FQRPAAGTRGEGSSQDFPATSSRMP--GQYFPP 359
+GQKR R QE SV QFP Q G++ SS S VKEEP I P AAA +T PA E +Q Q G RKYRGVRQRPWGKWAAEIRDPHKAARVWLGTF+TAEAAARAYDEAALRFRG+RAKLNFPENVR++P + P Q ++N ++ F Q P +F+ D T DY++YS+LLQS+ D Q QQ NLL QM N T GS ++Q+ S + + + FPNQ L F++P TR + + DFP S P Q+ PP
Sbjct: 96 AGQKRVRDHQEESVN-QFPEQFHQGFYGGLADFRGGESSSSRVKEEPTSIPPSTTVAEGAAAASTTTGRNPAVEANQPEQTG-EIRARKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVRLLPQQQIRPTTQLVISNPPTTQFSIRQQPPMPPHRFQLPDATTAHDYWQYSQLLQSNMDFRQPQPQQQHNLLPQMFNTSTM------GSLNTQASNISSSSSTTNYPLFFPNQPSGYLDFRQPGGQTRDDQT--DFPFVPSTWPDSDQFRPP 387
Match: A0A2R6R2N4 ((Ethylene-responsive transcription factor {ECO:0000313|EMBL:PSS19513.1}))
HSP 1 Score: 167.162 bits (422), Expect = 6.512e-46
Identity = 125/248 (50.40%), Postives = 150/248 (60.48%), Query Frame = 0
Query: 55 GGDGGGIGSGGVISYGVNSSSPSYSSGSSSSGQKRTRSDQESSVTTQFPGQQLPKLQRGISQD------SSSLSSVKEEPDGIAP------AAADATPPPAAEIDQSAQPGASYERRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGSRAKLNFPENVRMIPPPLAPPPQPRMANSSSSAFHQPAPFLSQQFEASDTLKDYFEYSRLLQSSGDLQLHQQPN-LLHQML 289
GG G GG S+GV+ S P G KR R +E SV+TQF +Q ++ RG S + SS S+ EE I P AA PPP + S Q +R+YRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRG++AKLNFPENVR +PP P S ++ F PA F +QQ + D ++DY+EYS+LLQ++ D QPN LL QM
Sbjct: 63 GGTGTASLGGGTTSFGVSGSLP---------GVKRER--EEESVSTQF-TEQAQRVYRGYSSNFRGAHGESSSSAAPEEFTRIVPPSITITTAAPLLPPP----EVSPQEVTGERKRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVRSLPPLPIP-------ASPATHFPAPAIFPTQQAQTPDIVRDYWEYSQLLQNNDDF----QPNRLLQQMF 283
Match: A0A5N5MSP5 (AP2/ERF domain-containing protein {ECO:0000259|PROSITE:PS51032})
HSP 1 Score: 167.933 bits (424), Expect = 2.235e-45
Identity = 115/253 (45.45%), Postives = 143/253 (56.52%), Query Frame = 0
Query: 79 SSGSSS-SGQKRTRSDQESSVTTQFPGQQLPKLQRGIS---------QDSSSLSSVKEEP--DGIAPAAADATPPPAAEIDQSAQPGASYERR-KYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGSRAKLNFPENVRMIPPPLAPPPQPRMANSSSSAFHQ------------------------PAPFLSQQFEASDTLKDYFEYSRLLQSSGDLQLHQQP--NLLHQMLNVP 292
+SGS S GQKR R + + T + LP + RG++ S + + +E P + PA AT PP+ E +A G + ER+ +YRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAE AARAYDEAALRFRG+RAKLNFPEN R+ PP Q + +S + + PAP L Q D ++DY++YS+LLQ+SGD QQP NLL QM P
Sbjct: 128 ASGSGSWIGQKRGREKEPGAATPL--KESLPGVYRGLNGFRSSLGDSLSSGAATETEEVPASTSVFPATPSATAPPSTE---TASMGETGERKIRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEGAARAYDEAALRFRGNRAKLNFPENARL------PPAQTQNVTASQAPVFRSQLPSGHRFQSISSPRQQAQRPQVPAPALFQ--SQPDIIRDYWDYSQLLQNSGDFLEQQQPPSNLLQQMFYNP 367
Match: A0A4S8JIN9 (AP2/ERF domain-containing protein {ECO:0000259|PROSITE:PS51032})
HSP 1 Score: 165.622 bits (418), Expect = 2.560e-45
Identity = 86/141 (60.99%), Postives = 99/141 (70.21%), Query Frame = 0
Query: 158 RRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGSRAKLNFPENVRMIPPPLAPPPQPRMANSSSSAFHQPAPFLSQQFEASDTLKDYFEYSRLLQSSGDLQLHQQPNLLHQMLNVPTAPTQS 298
+RKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAE AARAYDEAALRFRGSRAKLNFPENVR+ PP PP P + S + P ++A + DY EYSRLLQ +G+ Q +LL ++ APT +
Sbjct: 160 QRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEQAARAYDEAALRFRGSRAKLNFPENVRLHQPP--PPVSPTAQLTVSCSVAAPT------WDAQSSTADYLEYSRLLQGAGEYQRLPATSLLDSVMYTSYAPTMA 292
Match: A0A2J6KSP5 (AP2/ERF domain-containing protein {ECO:0000259|PROSITE:PS51032})
HSP 1 Score: 166.007 bits (419), Expect = 3.572e-45
Identity = 152/317 (47.95%), Postives = 180/317 (56.78%), Query Frame = 0
Query: 62 GSGGVISYGVNSSSPSYSSGSSSSGQKRTRSDQESSVTTQFPGQQLPKLQRGISQ---DSSSLSSVKEEPDGIAPAAAD--------ATPPPAAEIDQSAQPGASYERRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGSRAKLNFPENVRMIPPP-LAPPPQPRMANSSSSAF-----HQPAPFLSQQFEASDTLKDYFEYSRLLQSSGDLQLHQ-QPNLLHQMLNVPTAPTQSFGGSFSSQSSVTMLNSPFGQPFPNQQIAGLFQRPAAGTRGEGSSQDFPATSSRMPGQ-YFPP 359
G+GG S SS+ S SS S +GQKR R DQE SV QFP Q + + G + SS S VKEE A ++ PPA EI+Q Q G RRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTF+TAEAAARAYDEAALRFRG+RAKLNFPENVR++PPP + P Q ++ S ++ F Q + +DY++YS+LLQS+ + L Q + NLL QM + T + S S SS T N P FPNQ L R G E S DFP T PG FPP
Sbjct: 83 GAGGHYSMDSPSSAYSSSSSGSFAGQKRVR-DQEESVN-QFPEQFVQRFYGGYTDVRGGESSSSKVKEEVTTPTTTAVVALTTTAATSSQPPAMEINQYEQTGE--RRRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVRLLPPPQILPATQLAISTSPAAQFTIRQPPPLLQPQQFQQPGTTVARDYWQYSQLLQSTSNFGLQQPRSNLLPQMFSASTMASLHSQTSNLSSSSSTE-NYPLF--FPNQPSGYLDFRQPGGQNQEDQS-DFPETPPSWPGHDQFPP 391
Match: A0A3S6ZRB6 ((AP2/ERF transcription factor {ECO:0000313|EMBL:AUY63106.1}))
HSP 1 Score: 162.925 bits (411), Expect = 3.693e-44
Identity = 122/220 (55.45%), Postives = 142/220 (64.55%), Query Frame = 0
Query: 85 SGQKRTRSDQESSVTTQFPGQQLPKLQRGISQDSSSLSSVKEEPDGIAPAAADATPPPAAEIDQSAQPGASYERRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGSRAKLNFPENVRMIPPPLAPPP-QPRMANSSSSAF---------HQPAPFLSQQFE-ASDTLKDYFEYSRLLQSSGDLQLHQQPNLLHQMLNVPT 293
+GQK+TR ++ESSVT QF GQQ P++ RGI S S V A A P E S + RR RGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGS+AKLNFPENVR++ P PPP Q ++NS ++ F F QF+ SD +DY+EYS+LLQ++GD QL Q PNLL QM N T
Sbjct: 114 AGQKKTR-NEESSVT-QFSGQQFPRVHRGIESSSVSAEEVTSIAATTTTVTAGAPQSPPTETSPSYEETGERRRRY-RGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGSKAKLNFPENVRLVQSPQTPPPTQLTISNSPANLFPVNPPPHPAAPATYFQVPQFQTTSDIARDYWEYSQLLQNTGDFQLQQPPNLLQQMFNAST 330
Match: A0A7J6XA43 ((Ethylene-responsive transcription factor {ECO:0000313|EMBL:KAF5205350.1}))
HSP 1 Score: 160.999 bits (406), Expect = 3.753e-44
Identity = 81/131 (61.83%), Postives = 98/131 (74.81%), Query Frame = 0
Query: 159 RKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGSRAKLNFPENVRMIPP-PLAPPPQPRMAN---------SSSSAFHQPAPFLSQQFEASD--TLKDYFEYSRLLQSSGDLQ 277
RKYRGVRQRPWGKWAAEIRDPHKAARVWLGTF+TAE+AARAYDEAALRFRG+RAKLNFPENV++ P P++PP Q +++ S+ S F+Q P Q + SD ++DY EY +LL S D+Q
Sbjct: 101 RKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAESAARAYDEAALRFRGNRAKLNFPENVQLQPSLPVSPPTQISISDSQPTLFPVSSNPSWFYQTQPLQQQHLQMSDVNVMRDYMEYCQLLGSYRDVQ 231
Match: A0A804JRM0 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Ma07_p03220.1}))
HSP 1 Score: 162.155 bits (409), Expect = 4.889e-44
Identity = 89/153 (58.17%), Postives = 102/153 (66.67%), Query Frame = 0
Query: 158 RRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGSRAKLNFPENVRMIPPPLAPPPQPRMANSSSSAFHQPAPFLSQQFEASDTLKDYFEYSRLLQSSGDLQLHQQPNLLHQMLNVPTAPTQSFG---GSFSSQS 307
+RKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAE AARAYDEAALRFRGSRAKLNFPENVR+ PP PP P + S + P ++A + DY EYSRLLQ +G+ Q +L ++ APT GS +S S
Sbjct: 160 QRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEQAARAYDEAALRFRGSRAKLNFPENVRLHQPP--PPVSPTTQLTVSCSVAAPP------WDAQSSTADYLEYSRLLQGAGEYQRLPATSLFDSVMYSSYAPTMVSAVDDGSLASHS 304
Match: A0A834YBB1 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8377195.1}))
HSP 1 Score: 160.999 bits (406), Expect = 6.296e-44
Identity = 146/321 (45.48%), Postives = 171/321 (53.27%), Query Frame = 0
Query: 74 SSPSYSSGSSSSGQKRTRSDQESSVTTQFPGQQLPKLQRGISQ------DSSS----------------LSSVKEEPDGIAPAAADATPPPAAEIDQSAQPGASYERRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGSRAKLNFPENVRMIPPPLAPPPQPRMANSSSSAFHQPA-----PFL-----SQQFEASDTLKDYFEYSRLLQSSGDLQLHQQPNLLHQMLNVPTAPTQSFGGSFSSQSSVTMLNSPFGQPFPNQQIAGLFQRPAAGTRGEGSSQDFPATSSRMPGQYFPPSSS 362
S+P+ +S SSS G + R +E S T Q ++ RG DSSS S+V EE G AA ++PP I Q + R KYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRG+RAKLNFPE+VR + P L P ++A S A P PF+ +QQ ++ D +DY EYS+LLQS D Q Q LL QM S G SF + S L P PNQQ G F P T G+GS DFPA S Y PPS+S
Sbjct: 22 SNPATASCSSSWGGGQKRGREEESTTGDQLSQSALEVHRGFGDFRTSQGDSSSAAPNFFNFVFFFFAISFSTVTEE--GPRITAATSSPPQDENISQGEK------RIKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGNRAKLNFPESVR-VRPSLTVSPATQLAISDFPATLLPVSPLPQPFIDQSQATQQLQSYDITRDYLEYSQLLQSCSDFQT-QPSGLLEQMYYY-----SSLGSSFQAASPSLPL------PSPNQQ-RGYFMPPE--TPGQGSRSDFPAPSWTASSHY-PPSTS 317
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7AM71 | E-Value: 8.575e-49, PID: 48.12 | AP2/ERF domain-containing protein {ECO:0000259|PRO... [more] |
| A0A251VGN2 | E-Value: 1.932e-46, PID: 48.01 | (Putative DNA-binding domain-containing protein {E... [more] |
| A0A2R6R2N4 | E-Value: 6.512e-46, PID: 50.40 | (Ethylene-responsive transcription factor {ECO:000... [more] |
| A0A5N5MSP5 | E-Value: 2.235e-45, PID: 45.45 | AP2/ERF domain-containing protein {ECO:0000259|PRO... [more] |
| A0A4S8JIN9 | E-Value: 2.560e-45, PID: 60.99 | AP2/ERF domain-containing protein {ECO:0000259|PRO... [more] |
| A0A2J6KSP5 | E-Value: 3.572e-45, PID: 47.95 | AP2/ERF domain-containing protein {ECO:0000259|PRO... [more] |
| A0A3S6ZRB6 | E-Value: 3.693e-44, PID: 55.45 | (AP2/ERF transcription factor {ECO:0000313|EMBL:AU... [more] |
| A0A7J6XA43 | E-Value: 3.753e-44, PID: 61.83 | (Ethylene-responsive transcription factor {ECO:000... [more] |
| A0A804JRM0 | E-Value: 4.889e-44, PID: 58.17 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A834YBB1 | E-Value: 6.296e-44, PID: 45.48 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8377... [more] |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |