Resource Type:
Polypeptide
Name:
XM_017391007.1
Identifier:
XM_017391007.1-protein
Sequence:
MDDQTGGGSSADDAPSCPRGHWRPAEDDKLRQLVARYGPQNWNSIAEKLQ
GRSGKSCRLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWAHISRLF
PGRTDNAVKNHWHVIMARKQREQSKLCGKRSCPDLISAPDHVHRPNNNSS
KICCTNTHFLEFQNYKKMDSSTSWNFRPSASKDHAGNADRGGVNYSSSNE
FFRGSASSSTPLLHHPYHLSPSVSRGTLYRDFGSRAISGYKMLHSKHGDQ
ESMNRAMVSLGNNQQVREDESIIQKEIPFIDFLGVESLNS
Sequence Length:
290
Sequence Checksum:
b39eb55df9dfc1dabe4519d171bca236
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017391007.1, derives from mRNA, XM_017391007.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017391007.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017391007.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B6W6 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8538334.1}))
HSP 1 Score: 295.819 bits (756), Expect = 2.536e-97
Identity = 188/329 (57.14%), Postives = 210/329 (63.83%), Query Frame = 0
Match: A0A5J5B6W6 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8538334.1}))
HSP 1 Score: 295.819 bits (756), Expect = 2.536e-97
Identity = 188/329 (57.14%), Postives = 210/329 (63.83%), Query Frame = 0
Query: 1 MDDQTGGGSSADDAPSCPRGHWRPAEDDKLRQLVARYGPQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWAHISRLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSCPD-LISAPDHV----HRPNNN-----SSKICCTNTHFLEFQNYKK---------MDSSTSWNF-RPSA-------SKDHAGNADRGGVNYSSSNEFFRGSASSSTPLLHHPYHLSPSVSRGTLYRDFG------SRAISGYKMLHSKHGDQESMNRAMVSLGNN-----------QQVREDESIIQKEIPFIDFLGV 285
MDD G +S+DDA +CPRGHWRPAED+KLRQLV +YGPQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINR+PFTEEEEERLLAAHRIHGNKWA ISRLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRS D L+S + + R N+ SSKI N+ F EFQN K SS SW F RPSA S D G R N S N F S SS L H S S G +RDFG + + GY L +G E + R +VS G+N +Q +EDES QK++PFIDFLGV
Sbjct: 1 MDDI--GATSSDDARTCPRGHWRPAEDEKLRQLVEQYGPQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALISRLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSYQDHLLSDSNSLTYGFRRRNSKSQEEYSSKIRFDNSQFFEFQNPNKDRIFTVSPSSISSPSWTFTRPSALATNKSSSVDLFGREGRDYFNSSWKNCFTECSNSSDQSL--SARHYSNSSMFGG-FRDFGIFGLPNYKRVVGYSKLGDNNGSHEMIKRELVSFGDNSHAFAKMRAAIEQQKEDESTKQKDVPFIDFLGV 324
BLAST of XM_017391007.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BU44 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8546499.1}))
HSP 1 Score: 291.967 bits (746), Expect = 1.073e-95
Identity = 183/333 (54.95%), Postives = 215/333 (64.56%), Query Frame = 0
Match: A0A5J5BU44 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8546499.1}))
HSP 1 Score: 291.967 bits (746), Expect = 1.073e-95
Identity = 183/333 (54.95%), Postives = 215/333 (64.56%), Query Frame = 0
Query: 1 MDDQTGGGSSADDAPSCPRGHWRPAEDDKLRQLVARYGPQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWAHISRLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSCPDLISAPD---HVHRPNNN------SSKICCTNTHFLEFQNYKK---------MDSSTSW-NFRPSA-SKDHAGNADRGG-------VNYSSSNEFFRGSASSSTPLLHHPYHLSPSVSRGTLYRDFGSRAISGYKML------HSKHGDQES----MNRAMVSLGN-----------NQQVREDESIIQKEIPFIDFLGV 285
MD+ GG+S+DD CPRGHWRPAED+KLRQLV +YGPQNWNSIAEKLQGRSGKSCRLRWFNQLDPRIN +PFTEEEEERLLAAHRIHGNKWA ISRLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRS D++S + H R N+ SSKI N+ F EFQN K +S SW + RPSA + +++ +AD G N SS N S S+S Y + S+ G +R+FG+ + YK + +S+ GD R +VS G+ NQQV+EDES QK+IPFIDFLGV
Sbjct: 1 MDEN--GGASSDDTRGCPRGHWRPAEDEKLRQLVEQYGPQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINTRPFTEEEEERLLAAHRIHGNKWALISRLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSYQDVLSDSNSLTHGFRRRNSKTQEDYSSKIRFDNSQFFEFQNPNKDRIFTVLSPSSASPSWTSTRPSALAANNSVSADLFGREGRDNCFNSSSYNCTTESSNSTSDQYSLSRYCSNSSIFGG--FREFGAFGLPNYKRIVSSPFGYSRLGDNNGSHGMSKRELVSFGDNSQKFANMIATNQQVQEDESTKQKDIPFIDFLGV 329
BLAST of XM_017391007.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GPK4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5942417.1}))
HSP 1 Score: 284.648 bits (727), Expect = 1.015e-92
Identity = 180/339 (53.10%), Postives = 206/339 (60.77%), Query Frame = 0
Match: A0A7J7GPK4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5942417.1}))
HSP 1 Score: 284.648 bits (727), Expect = 1.015e-92
Identity = 180/339 (53.10%), Postives = 206/339 (60.77%), Query Frame = 0
Query: 1 MDDQTGGGSSADDAPSCPRGHWRPAEDDKLRQLVARYGPQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWAHISRLFPGRTDNAVKNHWHVIMARKQREQSKLCG-KRSCPDLISAPDH--------VHRPNNN------SSKICCTNTHFLEFQNYKKMDSST-------------SWNF-RPSASK-----DHAGNADRGGVNYSSSNEFFRGSASSSTPLLHHPYHLSPSVSRGTLYRDFG----SRAIS---GYKMLHSKHGDQESMNRAMVSLGNN----QQVRE--DE-------SIIQKEIPFIDFLGV 285
MD+ TGGG S+DDA +CPRGHWRPAED+KLRQLV +YGPQNWNSIA+KLQGRSGKSCRLRWFNQLDPRINR+PFTEEEE+RLLAAHRIHGNKWA ISRLFPGRTDNAVKNHWHVIMARKQREQSKLCG KRS D I+ D R N+ SSK + FLEFQ K T SWNF RP+ S D G R N SS+ S ++S L Y+L+PS R + FG R + GY L +G + +V G N ++ RE DE SI QK++PFIDFLGV
Sbjct: 1 MDESTGGGGSSDDARTCPRGHWRPAEDEKLRQLVEQYGPQNWNSIADKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEDRLLAAHRIHGNKWALISRLFPGRTDNAVKNHWHVIMARKQREQSKLCGTKRSYQDAINGGDDSSNTLSYGFRRRNSKTQQEDYSSKTRFESCQFLEFQTPNKERIFTVLPNLPPSSSSSPSWNFTRPTISAANNSGDLFGREGRDFFNPSSNYCTTESSNNTSEQALRR-YYLNPSACRD--FSPFGFPNYKRVVPSSFGYSKLGDGNGTHGMFKKELVRFGENSHPFEKKRETIDEHENGDKNSIKQKDVPFIDFLGV 336
BLAST of XM_017391007.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DW18 ((Uncharacterized protein {ECO:0000313|EMBL:THG07531.1}))
HSP 1 Score: 283.493 bits (724), Expect = 2.763e-92
Identity = 179/339 (52.80%), Postives = 205/339 (60.47%), Query Frame = 0
Match: A0A4S4DW18 ((Uncharacterized protein {ECO:0000313|EMBL:THG07531.1}))
HSP 1 Score: 283.493 bits (724), Expect = 2.763e-92
Identity = 179/339 (52.80%), Postives = 205/339 (60.47%), Query Frame = 0
Query: 1 MDDQTGGGSSADDAPSCPRGHWRPAEDDKLRQLVARYGPQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWAHISRLFPGRTDNAVKNHWHVIMARKQREQSKLCG-KRSCPDLISAPDH--------VHRPNNN------SSKICCTNTHFLEFQNYKKMDSST-------------SWNF-RPSASK-----DHAGNADRGGVNYSSSNEFFRGSASSSTPLLHHPYHLSPSVSRGTLYRDFG----SRAIS---GYKMLHSKHGDQESMNRAMVSLGNN----QQVRE--DE-------SIIQKEIPFIDFLGV 285
MD+ TGGG S+DDA +CPRGHWRPAED+KLRQLV +YGPQNWNSIA+KLQGRSGKSCRLRWFNQLDPRINR+PFTEEEE+RLLAAHRIHGNKWA ISRLFPGRTDNAVKNHWHVIMARKQREQSKLCG KRS D I+ D R N+ SSK + F EFQ K T SWNF RP+ S D G R N SS+ S ++S L Y+L+PS R + FG R + GY L +G + +V G N ++ RE DE SI QK++PFIDFLGV
Sbjct: 1 MDESTGGGGSSDDARTCPRGHWRPAEDEKLRQLVEQYGPQNWNSIADKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEDRLLAAHRIHGNKWALISRLFPGRTDNAVKNHWHVIMARKQREQSKLCGTKRSYQDAINGGDDSSNTLSYGFRRRNSKTQQEDYSSKTRFESCQFFEFQTPNKERIFTVLPNLPPSSSSSPSWNFTRPTISAANNSGDLFGREGRDFFNPSSNYCTTESSNNTSEQALRR-YYLNPSACRD--FSPFGFPNYKRVVPSSFGYSKLGDGNGTHGMFKKELVRFGENSHPFEKKRETIDEHENGDKNSIKQKDVPFIDFLGV 336
BLAST of XM_017391007.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BQ73 ((Putative trichome differentiation protein GL1 {ECO:0000313|EMBL:MPA71092.1}))
HSP 1 Score: 276.559 bits (706), Expect = 5.879e-90
Identity = 179/322 (55.59%), Postives = 206/322 (63.98%), Query Frame = 0
Match: A0A5B7BQ73 ((Putative trichome differentiation protein GL1 {ECO:0000313|EMBL:MPA71092.1}))
HSP 1 Score: 276.559 bits (706), Expect = 5.879e-90
Identity = 179/322 (55.59%), Postives = 206/322 (63.98%), Query Frame = 0
Query: 1 MDDQTGGGSSADDAPSCPRGHWRPAEDDKLRQLVARYGPQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWAHISRLFPGRTDNAVKNHWHVIMARKQREQSKLCG-KRSCPDLISAPDHVHRPNNNSSKICCTNTHFLEFQNYKK-------MDSSTSWNFRPSA-------SKDHAGNADRGGVNYSSSNEFFRGSASSSTPLLHHPYHLSPSVSRGTLYRDFGSRAISGYKML------HSKHGDQES----MNRAMVSLGNN------------QQVREDESIIQKEIPFIDFLGV 285
MD++ GG+S+DDA +CPRGHWRPAED+KLRQLV +YGPQNWNSIAEKLQGRSGKSCRLRWFNQLDPRIN +PFTEEEEERLLAAHRIHGNKWA ISRLFPGRTDNAVKNHWHVIMARKQREQSKLCG KRS D++ D + N + F EFQN K SSTS PSA S D G R N SS N F S +SS L Y+ + S+ G +RD G+ +S YK + +S+ GD R +VS G+N ++ REDES QK+IPFIDFLGV
Sbjct: 1 MDEK--GGASSDDARTCPRGHWRPAEDEKLRQLVEQYGPQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINTRPFTEEEEERLLAAHRIHGNKWALISRLFPGRTDNAVKNHWHVIMARKQREQSKLCGNKRSYQDVL-ITDSNSLTHGNFRRRNSKPQEF-EFQNPNKNLNSSPNFWSSTSTRVLPSALATNNSVSVDFFGREGRDYFNSSSYN-FTTESPNSSDQSLSR-YYSNSSIFGG--FRDLGAFGLSNYKRVVPSPFGYSRLGDNNGSHGMTKRELVSFGDNSKPFPKMRAITIEKDREDESTKQKDIPFIDFLGV 314
BLAST of XM_017391007.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: E0CQL8 ((Uncharacterized protein {ECO:0000313|EMBL:CBI19947.3}))
HSP 1 Score: 271.552 bits (693), Expect = 7.117e-88
Identity = 174/315 (55.24%), Postives = 199/315 (63.17%), Query Frame = 0
Match: E0CQL8 ((Uncharacterized protein {ECO:0000313|EMBL:CBI19947.3}))
HSP 1 Score: 271.552 bits (693), Expect = 7.117e-88
Identity = 174/315 (55.24%), Postives = 199/315 (63.17%), Query Frame = 0
Query: 10 SADDAPSCPRGHWRPAEDDKLRQLVARYGPQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWAHISRLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSCPDLISAPDHV--------HRPNNNSSKICCTNTHFLEFQNYKK--------MDSSTSWNFRPSASK--DHAGNAD---RGGVNY--SSSNEFFRGSASSSTPLLHHPYHLSPSVSRGTLYRDFG----SRAISGYKMLHSKHGDQESM-NRAMVSLGN-----------NQQVREDESIIQKEIPFIDFLGV 285
S+DDA +CPRGHWRPAED+KLRQLV YG QNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWA ISRLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRS D++S + R SS N+ EF N K SS SW F S SK +++ + D RGG ++ S S++ S +S L+ + S + FG R +SG + +SK GD M R V+ G+ NQQ +EDESI QK IPFIDFLGV
Sbjct: 4 SSDDAKTCPRGHWRPAEDEKLRQLVEEYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWALISRLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSYKDVLSDSNTSSNGFRGSNSRSQQYSSANRLENSRLFEFLNPNKEGIFSISPSSSSPSWTFARSISKATNNSSSTDLLRRGGRDHFNSCSSDGIMDSQNSLDRSLYRYFSNSSAYGGYRTSTAFGFPNYKRVVSG-PVGYSKLGDPHGMLKREFVNFGDNSPTFAKMIMTNQQEQEDESIKQKNIPFIDFLGV 317
BLAST of XM_017391007.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438FRY1 ((Transcription factor MYB52 {ECO:0000313|EMBL:RVW62703.1}))
HSP 1 Score: 271.552 bits (693), Expect = 7.117e-88
Identity = 174/315 (55.24%), Postives = 199/315 (63.17%), Query Frame = 0
Match: A0A438FRY1 ((Transcription factor MYB52 {ECO:0000313|EMBL:RVW62703.1}))
HSP 1 Score: 271.552 bits (693), Expect = 7.117e-88
Identity = 174/315 (55.24%), Postives = 199/315 (63.17%), Query Frame = 0
Query: 10 SADDAPSCPRGHWRPAEDDKLRQLVARYGPQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWAHISRLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSCPDLISAPDHV--------HRPNNNSSKICCTNTHFLEFQNYKK--------MDSSTSWNFRPSASK--DHAGNAD---RGGVNY--SSSNEFFRGSASSSTPLLHHPYHLSPSVSRGTLYRDFG----SRAISGYKMLHSKHGDQESM-NRAMVSLGN-----------NQQVREDESIIQKEIPFIDFLGV 285
S+DDA +CPRGHWRPAED+KLRQLV YG QNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWA ISRLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRS D++S + R SS N+ EF N K SS SW F S SK +++ + D RGG ++ S S++ S +S L+ + S + FG R +SG + +SK GD M R V+ G+ NQQ +EDESI QK IPFIDFLGV
Sbjct: 4 SSDDAKTCPRGHWRPAEDEKLRQLVEEYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWALISRLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSYKDVLSDSNTSSNGFRGSNSRSQQYSSANRLENSRLFEFLNPNKEGIFSISPSSSSPSWTFARSISKATNNSSSTDLLRRGGRDHFNSCSSDGIMDSQNSLDRSLYRYFSNSSAYGGYRTSTAFGFPNYKRVVSG-PVGYSKLGDPHGMLKREFVNFGDNSPTFAKMIMTNQQEQEDESIKQKNIPFIDFLGV 317
BLAST of XM_017391007.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438HKV2 ((Transcription factor MYB52 {ECO:0000313|EMBL:RVW85071.1}))
HSP 1 Score: 271.166 bits (692), Expect = 9.341e-88
Identity = 174/315 (55.24%), Postives = 199/315 (63.17%), Query Frame = 0
Match: A0A438HKV2 ((Transcription factor MYB52 {ECO:0000313|EMBL:RVW85071.1}))
HSP 1 Score: 271.166 bits (692), Expect = 9.341e-88
Identity = 174/315 (55.24%), Postives = 199/315 (63.17%), Query Frame = 0
Query: 10 SADDAPSCPRGHWRPAEDDKLRQLVARYGPQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWAHISRLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSCPDLISAPDHV--------HRPNNNSSKICCTNTHFLEFQNYKK--------MDSSTSWNFRPSASK--DHAGNAD---RGGVNY--SSSNEFFRGSASSSTPLLHHPYHLSPSVSRGTLYRDFG----SRAISGYKMLHSKHGDQESM-NRAMVSLGN-----------NQQVREDESIIQKEIPFIDFLGV 285
S+DDA +CPRGHWRPAED+KLRQLV YG QNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWA ISRLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRS D++S + R SS N+ EF N K SS SW F S SK +++ + D RGG ++ S S++ S +S L+ + S + FG R +SG + +SK GD M R V+ G+ NQQ +EDESI QK IPFIDFLGV
Sbjct: 4 SSDDAKTCPRGHWRPAEDEKLRQLVEEYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWALISRLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSYKDVLSDSNTSSNGFRGSNSRSQQYSSANRLENSRLFEFLNPNKEGIFSISPSSSSPSWTFARSISKATNNSSSTDLPRRGGRDHFNSCSSDGIMDSQNSLDRSLYRYFSNSSAYGGYRTSTAFGFPNYKRVVSG-PVGYSKLGDPHGMLKREFVNFGDNSPTFAKMIMTNQQEQEDESIKQKNIPFIDFLGV 317
BLAST of XM_017391007.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4PRS6 ((Putative transcription factor MYB-HB-like family {ECO:0000313|EMBL:KAE9603964.1}))
HSP 1 Score: 269.24 bits (687), Expect = 4.449e-87
Identity = 152/315 (48.25%), Postives = 195/315 (61.90%), Query Frame = 0
Match: A0A6A4PRS6 ((Putative transcription factor MYB-HB-like family {ECO:0000313|EMBL:KAE9603964.1}))
HSP 1 Score: 269.24 bits (687), Expect = 4.449e-87
Identity = 152/315 (48.25%), Postives = 195/315 (61.90%), Query Frame = 0
Query: 1 MDDQTGGGSSADDAPSCPRGHWRPAEDDKLRQLVARYGPQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWAHISRLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSCPDLISAPDHVHRPNNN----SSKICCTNTHFLEFQNYKKMDSSTSWNFR----PSASKDHAGN----AD---RGG--VNYSSSNEFFRGSASSSTPLLHHPYHLSPSVSRGTLYRDFGSRAISGYKMLHSKHGDQESMNRAMVSLGNN-------------QQVREDESIIQKEIPFIDFLGV 285
M+D + S+ ++ CPRGHWRP ED+KLRQLV ++G QNWNSIAEKLQGRSGKSCRLRWFNQLDPRINR+PFTEEEEERLLA+HRIHGNKWA I+RLFPGRTDN+VKNHWHVIMAR+QREQSKLCGKR +L + + P + SSK N F +F+N +D T+WNF P A+ + N AD +GG V ++ SN + + SS L+ H + + + + ++ S + L S D + R + S +N +Q + +I KE+PFIDFLGV
Sbjct: 1 MEDSSAADSTGEETKICPRGHWRPVEDEKLRQLVEQFGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLASHRIHGNKWALIARLFPGRTDNSVKNHWHVIMARRQREQSKLCGKRRFQELYNDSNIEKIPKSKDLLFSSKFGLENARFFDFRN---LDDHTTWNFASSSFPIATSTNTSNTIVVADSFRKGGKDVYFNRSNVYLPECSKSSDKFLYR-MHPNTTTTNAFSFPNYKRVVQSPFGFLGSSDHDGR-IKRDLRSFCDNSSTFTNLKASSEKEQADYEPNIEHKEVPFIDFLGV 310
BLAST of XM_017391007.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4U5PU06 ((MYB transcriptional factor {ECO:0000313|EMBL:TKS00704.1}))
HSP 1 Score: 268.085 bits (684), Expect = 1.998e-86
Identity = 168/333 (50.45%), Postives = 207/333 (62.16%), Query Frame = 0
Match: A0A4U5PU06 ((MYB transcriptional factor {ECO:0000313|EMBL:TKS00704.1}))
HSP 1 Score: 268.085 bits (684), Expect = 1.998e-86
Identity = 168/333 (50.45%), Postives = 207/333 (62.16%), Query Frame = 0
Query: 3 DQTGGGSSADDAPS--CPRGHWRPAEDDKLRQLVARYGPQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWAHISRLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSCPDLIS---APDHVHRPNNNS-----SKICCTNTHFLEFQNYKK--------MDSSTSWNFRPS--ASKDHAGNAD----RGGVNYSSSNEFFRGSASSSTPLLHHP---YHLSPSVSRGTLYRDFGSRAISGYKML-------HSKHGD----------------QESMNRAMVSLGNNQQVREDESIIQKEIPFIDFLGV 285
+++ G+S+DDA S CPRGHWRPAEDDKLRQLV +YG QNWNSIAEKLQGRSGKSCRLRWFNQLDPRINR+PF+E+EEERLLAAHRIHGNKWA I+RLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRS D +S A + H + + S+I + LEF+N K SS SWNF PS A+ +++ + D G NY +S+ F S SS + P Y+++ SV YR I Y+ + + K GD S + + + N+Q+ + ESI K++PFIDFLGV
Sbjct: 2 EESLAGNSSDDAKSTACPRGHWRPAEDDKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFSEQEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSYQDNLSESNATNSSHAGKSRAQDVFNSRIGFDESRVLEFRNPGKDRILSISPSGSSPSWNFTPSTIAASNNSSSVDLSRREGTDNYFNSSLFC--STESSKLISDQPIYRYYMNSSVCGS--YRSSSIFGIPNYRRVVPSPFGSYLKLGDDYENHGMIKKELASCHNSSTLKNLRATSNHQEKGDHESIKHKDVPFIDFLGV 330
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5B6W6 | E-Value: 2.536e-97, PID: 57.14 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8538... [more] |
| A0A5J5BU44 | E-Value: 1.073e-95, PID: 54.95 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8546... [more] |
| A0A7J7GPK4 | E-Value: 1.015e-92, PID: 53.10 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5942... [more] |
| A0A4S4DW18 | E-Value: 2.763e-92, PID: 52.80 | (Uncharacterized protein {ECO:0000313|EMBL:THG0753... [more] |
| A0A5B7BQ73 | E-Value: 5.879e-90, PID: 55.59 | (Putative trichome differentiation protein GL1 {EC... [more] |
| E0CQL8 | E-Value: 7.117e-88, PID: 55.24 | (Uncharacterized protein {ECO:0000313|EMBL:CBI1994... [more] |
| A0A438FRY1 | E-Value: 7.117e-88, PID: 55.24 | (Transcription factor MYB52 {ECO:0000313|EMBL:RVW6... [more] |
| A0A438HKV2 | E-Value: 9.341e-88, PID: 55.24 | (Transcription factor MYB52 {ECO:0000313|EMBL:RVW8... [more] |
| A0A6A4PRS6 | E-Value: 4.449e-87, PID: 48.25 | (Putative transcription factor MYB-HB-like family ... [more] |
| A0A4U5PU06 | E-Value: 1.998e-86, PID: 50.45 | (MYB transcriptional factor {ECO:0000313|EMBL:TKS0... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |