XM_017391613.1

Resource Type: 
Polypeptide
Name: 
XM_017391613.1
Identifier: 
XM_017391613.1-protein
Sequence: 
MDYEAPLLVSSVTELKKKEKLQKKAKSGGFESLGLSFNVFRGVKRKGYKV
PTPIQRKTMPLILSGCDVVAMARTGSGKTAAVLVPMFEKLRNHLDECGGI
RALILSPTRDLALQTLKFAQELGRYTDLRISLLVGGDSMESQFEELAQNP
DIIIATPGRLMHHLSEVEDMSLRSVEYVVFDEADCIFSMGFAEQLHQILS
KLSDNRQTLLFSATLPSALAEFAKAGLRDPQRVRLDLETKISPDLKLVFF
TLRQEEKHAALLYLIEERIRPDEQTLIFVSTKYHVEFLNVLCQERGIRPS
VCYGDMDQDARKMAVSQFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFP
PRPKLFVHRVGRAARAGRTGTAFSFVTTEDMPHVLDLHLFLSKPVRAAPT
EEEVSHNVNNLMSKIDQAIANGETVYGRFPQTVLDLYADRVRELLDSSTE
LHSLERPCTKAFRLYYKTKAKPSKESVRRAKKLPREGLHPIFKSSLGGDE
ITALAYLEQLKKYRPKQTILEAEGEVAKSKKVKGSASQGGDVMKMKRAVH
EEIINKEHQKHSRECAEKKYEMDDDMDEVMENVPTAGIEKKVSGSKRKAK
SFKDEEYFISSVPTNQHYEAGLSEKGSRGFESNRLDADVLDLAADDNSGL
QKQKASYHWDKRSKKYIKLNSGDRVTASGKVKTESGAKVKANKTGIYKRW
KERSHNTISSRGTSRDGGAEEPTNIAGARGRMDSRRFKGGKQRQSIPNAH
VRSELKNNEQVRKERQKKATKLQQLKSNPKRGKKFGKGGKNGKRGGKSR
Sequence Length: 
799
Sequence Checksum: 
4fa65796198e5a6c623efb5351f3b78b
View location in JBrowse: 
DCARv2_Chr4:22165413..22182045+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017391613.1, derives from mRNA, XM_017391613.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017391613.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017391613.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BV39 (RNA helicase {ECO:0000256|ARBA:ARBA00012552} (3.6.4.13 {ECO:0000256|ARBA:ARBA00012552}))

HSP 1 Score: 1214.91 bits (3142), Expect = 0.000e+0
Identity = 590/769 (76.72%), Postives = 677/769 (88.04%), Query Frame = 0
 
Query:    7 LLVSSVTELKKKEKLQKKAKSGGFESLGLSFNVFRGVKRKGYKVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAVLVPMFEKLRNHLDECGGIRALILSPTRDLALQTLKFAQELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLRSVEYVVFDEADCIFSMGFAEQLHQILSKLSDNRQTLLFSATLPSALAEFAKAGLRDPQRVRLDLETKISPDLKLVFFTLRQEEKHAALLYLIEERIRPDEQTLIFVSTKYHVEFLNVLCQERGIRPSVCYGDMDQDARKMAVSQFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPRPKLFVHRVGRAARAGRTGTAFSFVTTEDMPHVLDLHLFLSKPVRAAPTEEEVSHNVNNLMSKIDQAIANGETVYGRFPQTVLDLYADRVRELLDSSTELHSLERPCTKAFRLYYKTKAKPSKESVRRAKKLPREGLHPIFKSSLGGDEITALAYLEQLKKYRPKQTILEAEGEVAKSKKVKGSASQGGDVMKMKRAVHEEIINKEHQKHSRECAEKKYEMDDDMDEVMENVPTAGIEKKVSGSKRKAKSFKDEEYFISSVPTNQHYEAGLSEKGSRGFESNRLDADVLDLAADDNSGLQKQKASYHWDKRSKKYIKLNSGDRVTASGKVKTESGAKVKANKTGIYKRWKERSHNTISSRGTSRDGGAEEPTNIAGARGRMDSRRFKGGKQRQSIPNAHVRSELKNNEQVRKERQKKATKLQQL 775
            +L SS  ELK+KEK +KKAKSGGFESLGLS NVFRGVKRKGY+VPTPIQRKTMPLI+SG DVVAMARTGSGKTAA LVPM EKL+ H+ + G +RALILSPTRDLALQTLKF +ELGR+TDLRISLLVGGD+MESQFEELAQNPDIIIATPGRLMHHLSEV+DMSLR+VEYVVFDEADC+F MGFAEQLH+IL++LS+NRQTLLFSATLPSALAEFAKAGLRDPQ +RLDLETKISPDLKL+FF+LRQEEK+AALLYLI E+I  DEQTLIFVSTKYHVEFLN L +E GI PSVCYGDMDQDARK+ VS+FR+RKTMLLIVTD+AARGIDIPLLDNVINWDFPP+PK+FVHRVGRAARAGRTG+AFSFVT+EDMP++LDLHLFLSKP+RAAPTE+EV  +++ +MSKIDQA+ANGETVYGRFPQTV+DL +DRVRE++DSS EL SL+R C  AFRLY KTK  P++ES+RRAK LP EGLHPIFK+ LGG+E+TALA+ E+LK +RPKQTILEAEGE AKSK ++G +SQ  DVMK KRA+HE IIN  HQ+ S +   K+         + E   + G EKKVSGSKRK KSFKDEEYFISSVPTNQH+EAGLS +G++GFESNRL+A VLDL AD + GLQKQK+ YHWDKRSKKYIKLN+GDRVTASGK+KTESGAKVKANKTGIYK+WKERSH+ IS RGTS DG AEE T +AG  G   +RRF+GG++ QS+PNAHVRSE+K+ EQVRKERQKKA ++  +
Sbjct:    7 ILASSKAELKRKEKQRKKAKSGGFESLGLSPNVFRGVKRKGYRVPTPIQRKTMPLIVSGHDVVAMARTGSGKTAAFLVPMLEKLQQHVPQVG-VRALILSPTRDLALQTLKFTKELGRFTDLRISLLVGGDTMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHKILAQLSENRQTLLFSATLPSALAEFAKAGLRDPQLLRLDLETKISPDLKLMFFSLRQEEKYAALLYLIREQISSDEQTLIFVSTKYHVEFLNTLFREEGIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGSAFSFVTSEDMPYLLDLHLFLSKPIRAAPTEDEVLQDMDGVMSKIDQAVANGETVYGRFPQTVIDLVSDRVREIIDSSAELTSLQRSCINAFRLYSKTKPSPARESIRRAKVLPCEGLHPIFKNVLGGNELTALAFSERLKAFRPKQTILEAEGEAAKSKHLQGPSSQWTDVMKKKRAIHEGIINLVHQQRSNDHVAKEV--------ISETTSSKGKEKKVSGSKRKTKSFKDEEYFISSVPTNQHWEAGLSVRGNQGFESNRLEAAVLDLVADGSEGLQKQKSKYHWDKRSKKYIKLNNGDRVTASGKIKTESGAKVKANKTGIYKKWKERSHSKISLRGTSGDGNAEEATRLAGPHGH--NRRFRGGRKHQSMPNAHVRSEIKDVEQVRKERQKKADRISYM 764
[Close]
BLAST of XM_017391613.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BIN5 (RNA helicase {ECO:0000256|ARBA:ARBA00012552} (3.6.4.13 {ECO:0000256|ARBA:ARBA00012552}) (Fragment))

HSP 1 Score: 1181.39 bits (3055), Expect = 0.000e+0
Identity = 584/769 (75.94%), Postives = 672/769 (87.39%), Query Frame = 0
 
Query:    7 LLVSSVTELKKKEKLQKKAKSGGFESLGLSFNVFRGVKRKGYKVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAVLVPMFEKLRNHLDECGGIRALILSPTRDLALQTLKFAQELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLRSVEYVVFDEADCIFSMGFAEQLHQILSKLSDNRQTLLFSATLPSALAEFAKAGLRDPQRVRLDLETKISPDLKLVFFTLRQEEKHAALLYLIEERIRPDEQTLIFVSTKYHVEFLNVLCQERGIRPSVCYGDMDQDARKMAVSQFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPRPKLFVHRVGRAARAGRTGTAFSFVTTEDMPHVLDLHLFLSKPVRAAPTEEEVSHNVNNLMSKIDQAIANGETVYGRFPQTVLDLYADRVRELLDSSTELHSLERPCTKAFRLYYKTKAKPSKESVRRAKKLPREGLHPIFKSSLGGDEITALAYLEQLKKYRPKQTILEAEGEVAKSKKVKGSASQGGDVMKMKRAVHEEIINKEHQKHSRECAEKKYEMDDDMDEVMENVPTAGIEKKVSGSKRKAKSFKDEEYFISSVPTNQHYEAGLSEKGSRGFESNRLDADVLDLAADDNSGLQKQKASYHWDKRSKKYIKLNSGDRVTASGKVKTESGAKVKANKTGIYKRWKERSHNTISSRGTSRDGGAEEPTNIAGARGRMDSRRFKGGKQRQSIPNAHVRSELKNNEQVRKERQKKATKLQQL 775
            +L SS  ELK+KEK +KKAKSGGFESLGLS NVFRG+KRKGY+VPTPIQRKTMPLILSG DVVAMARTGSGKTAA L+PM EKL+ H+ + G +RALILSPTRDLALQTLKF +ELGR+TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV+DMSLR+VEYVVFDEADC+F MGFAEQLH+IL++LS+NRQTLLFSATLPSALAEFAKAGLRDPQ VRLDLETKISPDLKL+FFTLR EEK+AALLYL  E I  D+QTLIFVSTK+HVEFLN L +E GI PSVCYGDMDQDARK+ VS+FR+RKTMLLIVTD+AARGIDIPLLDNVINWDFPP+PK+FVHRVGRAARAGRTG+AFSFVT+EDMP++LDLHLFLSKP+RAAP+EEEV  +++ +MSKIDQA+ANGETVYGRFPQTV+DL +DRVRE++DSS EL+SL+R C  AF LY KTK  P++ES+RRAK LP EGLHPIFK+ LGG+E+TALA+ E+LK +RPKQTILEAEGE AKSK +KG +SQ  DVMK KRA+HEEIIN  HQ+ S +   K+         + E   +   EKKVSGSKRK KSFKDEEYFISSVPTNQH+EAGLS + ++GFESNRL+A VLDL AD + GLQKQK+ YHWDKRSKKYIKLN+G+RVTASGK+KTESGAKVKANKTGIYK+WKERSH+ IS RGTS +  A E T++AGA G   +RRF+GG + QS+PNAHVRSE+K+ EQVRKERQKKA ++  +
Sbjct:   41 ILASSKAELKRKEKQKKKAKSGGFESLGLSPNVFRGIKRKGYRVPTPIQRKTMPLILSGLDVVAMARTGSGKTAAFLLPMLEKLKQHVPQSG-VRALILSPTRDLALQTLKFTKELGRFTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHKILAQLSENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKLMFFTLRPEEKYAALLYLTREHISSDQQTLIFVSTKHHVEFLNTLFREEGIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPKPKMFVHRVGRAARAGRTGSAFSFVTSEDMPYLLDLHLFLSKPIRAAPSEEEVLQDMDGVMSKIDQAVANGETVYGRFPQTVIDLVSDRVREIIDSSAELNSLQRTCINAFCLYSKTKPSPARESIRRAKVLPCEGLHPIFKNVLGGNELTALAFSERLKAFRPKQTILEAEGEAAKSKHLKGPSSQWVDVMKKKRAIHEEIINLVHQQRSSDHVAKEV--------ISEITFSKDKEKKVSGSKRKTKSFKDEEYFISSVPTNQHWEAGLSVRANQGFESNRLEAAVLDLVADGSEGLQKQKSKYHWDKRSKKYIKLNNGERVTASGKIKTESGAKVKANKTGIYKKWKERSHSKISLRGTSSESNAGEATSLAGAHG--GNRRFRGGNKHQSVPNAHVRSEIKDLEQVRKERQKKANRVSYM 798
[Close]
BLAST of XM_017391613.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P2JPG4 (RNA helicase {ECO:0000256|ARBA:ARBA00012552} (3.6.4.13 {ECO:0000256|ARBA:ARBA00012552}))

HSP 1 Score: 1167.53 bits (3019), Expect = 0.000e+0
Identity = 565/776 (72.81%), Postives = 662/776 (85.31%), Query Frame = 0
 
Query:    1 MDYEAPLLVSSVTELKKKEKLQKKAKSGGFESLGLSFNVFRGVKRKGYKVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAVLVPMFEKLRNHLDECGGIRALILSPTRDLALQTLKFAQELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLRSVEYVVFDEADCIFSMGFAEQLHQILSKLSDNRQTLLFSATLPSALAEFAKAGLRDPQRVRLDLETKISPDLKLVFFTLRQEEKHAALLYLIEERIRPDEQTLIFVSTKYHVEFLNVLCQERGIRPSVCYGDMDQDARKMAVSQFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPRPKLFVHRVGRAARAGRTGTAFSFVTTEDMPHVLDLHLFLSKPVRAAPTEEEVSHNVNNLMSKIDQAIANGETVYGRFPQTVLDLYADRVRELLDSSTELHSLERPCTKAFRLYYKTKAKPSKESVRRAKKLPREGLHPIFKSSLGGDEITALAYLEQLKKYRPKQTILEAEGEVAKSKKVKGSASQGGDVMKMKRAVHEEIINKEHQKHSRECAEKKYEMDDDMDEVMENVPTAGIEKKVSGSKRKAKSFKDEEYFISSVPTNQHYEAGLSEKGSRGFESNRLDADVLDLAADDNSGLQKQKASYHWDKRSKKYIKLNSGDRVTASGKVKTESGAKVKANKTGIYKRWKERSHNTISSRGTSRDGGAEEPTNIAGARGRMDSRRFKGGKQRQSIPNAHVRSELKNNEQVRKERQKKATKLQQLK 776
            M  E PL VSS  ELK+K+ L+KKAKSGGFESL LS NV+ G+KRKGY+VPTPIQRKTMPLILSG DVVAMARTGSGKTAA LVPM E+L+ H+ + GG+RALILSPTRDLALQTLKF +ELG++ DLR SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV+DMSL++VEYVVFDEAD +F MGFAEQLH+IL++LS+NRQTLLFSAT+PSALAEFA AGLRDP  VRLD+ETKISPDLKL FFTLRQEEKHAALLYLI E I  D+QTLIFVSTK+HVEFLN+LC+E GI PSVCYGDMDQDARK+ +S+FR+R+TMLLIVTDVAARGIDIPLLDNV+NWDFPP+PK+FVHRVGRAARAGRTGTAFSFVT+EDMP++LDLHLFLSKP+RAAPTEEEV  +++ +M+KIDQA+ANGET+YGRFPQTVLDL ADRVR+++DSS EL SL+R C  AFRLY KTK  PSKES+RR K LP EGLHPIFK+ LGG E+ ALA+ E+LK +RPKQTILEAEGE AKSK +KG +SQ  +VMK KRAVHE IIN  HQ+ S +  E         +E    +  AG +K   G+KRK KSF+DEEYFISS+PTN H EAGLS + + GF +NRL+A VLDL ADD+ GLQKQKASYHWDKRSKKYIKLN+G+RVTASGK+KTESGAKVKA KTGIYK+WKE+SH  +S +G+S DG AEE  N +G    + +R+F+G K++ ++PNA+VRSE+++ EQVRKERQKKA ++  +K
Sbjct:    1 MADEEPL-VSSKAELKRKQNLKKKAKSGGFESLNLSPNVYGGIKRKGYRVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLERLKQHVPQ-GGVRALILSPTRDLALQTLKFTKELGKFIDLRTSLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLKTVEYVVFDEADSLFGMGFAEQLHKILAQLSENRQTLLFSATMPSALAEFATAGLRDPHIVRLDVETKISPDLKLTFFTLRQEEKHAALLYLIREHISSDQQTLIFVSTKHHVEFLNILCREEGIEPSVCYGDMDQDARKIHISKFRARRTMLLIVTDVAARGIDIPLLDNVVNWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMPYLLDLHLFLSKPIRAAPTEEEVLQDMDAVMNKIDQAVANGETIYGRFPQTVLDLVADRVRQIIDSSVELTSLQRTCINAFRLYIKTKPLPSKESIRRVKDLPCEGLHPIFKNVLGGGELMALAFSERLKSFRPKQTILEAEGEAAKSKNMKGPSSQWVNVMKKKRAVHENIINLVHQQRSSKLVE---------EEPQAEINAAGKKKNAQGTKRKEKSFRDEEYFISSIPTNHHTEAGLSVRSNEGFGTNRLEAAVLDLVADDSEGLQKQKASYHWDKRSKKYIKLNNGERVTASGKIKTESGAKVKATKTGIYKKWKEQSHKKVSLKGSSIDGNAEETANFSG--DNVSNRKFRGRKKQHAVPNANVRSEIRDLEQVRKERQKKANRISYVK 763
[Close]
BLAST of XM_017391613.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: W9QI16 (RNA helicase {ECO:0000256|ARBA:ARBA00012552} (3.6.4.13 {ECO:0000256|ARBA:ARBA00012552}))

HSP 1 Score: 1167.14 bits (3018), Expect = 0.000e+0
Identity = 574/782 (73.40%), Postives = 667/782 (85.29%), Query Frame = 0
 
Query:    7 LLVSSVTELKKKEKLQKKAKSGGFESLGLSFNVFRGVKRKGYKVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAVLVPMFEKLRNHLDECGGIRALILSPTRDLALQTLKFAQELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLRSVEYVVFDEADCIFSMGFAEQLHQILSKLSDNRQTLLFSATLPSALAEFAKAGLRDPQRVRLDLETKISPDLKLVFFTLRQEEKHAALLYLIEERIRPDEQTLIFVSTKYHVEFLNVLCQERGIRPSVCYGDMDQDARKMAVSQFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPRPKLFVHRVGRAARAGRTGTAFSFVTTEDMPHVLDLHLFLSKPVRAAPTEEEVSHNVNNLMSKIDQAIANGETVYGRFPQTVLDLYADRVRELLDSSTELHSLERPCTKAFRLYYKTKAKPSKESVRRAKKLPREGLHPIFKSSLGGDEITALAYLEQLKKYRPKQTILEAEGEVAKSKKVKGSASQGGDVMKMKRAVHEEIINKEHQKHSRECAEKKYEMDDDMDEVMENVPTAGIEKKVSGSKRKAKSFKDEEYFISSVPTNQHYEAGLSEKGSRGFESNRLDADVLDLAADDNSGLQKQKASYHWDKRSKKYIKLNSGDRVTASGKVKTESGAKVKANKTGIYKRWKERSHNTISSRGTSRDGGAEEPTNIAGARGRMDSRRFKGGKQRQSIPNAHVRSELKNNEQVRKERQKKATKLQQLKSNPKRGKKFGKG 788
            L VSS  ELK++EK +KKAKSGGFESLGLS NVFRG+KRKGYKVPTPIQRKTMPLI++G DVVAMARTGSGKTAA LVPM E+L+ H+ + G +RALILSPTRDLALQTLKFA++LGR+TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLR+VEYVVFDEADC+F MGFAEQLH+IL++LS+NRQTLLFSATLPSALAEFAKAGLRDPQ VRLDLETKISPDLKL FFTLRQEEKHAALLYL+ E+I  DEQTLIFVSTK+HVEFLN+L +E GI PSVCYG+MDQ+ARK+ +S+FR+RKTM LIVTDVAARGIDIPLLDNVINWDFPP+PK+FVHRVGRAARAGR GTAFSF+T+EDM +VLDLHLFLSKP+RAAPTEEEV  +++ ++SKIDQA ANGETVYGRFPQTV+DL +DRVRE++DSS EL +L + CT AFRLY KTK  PSKES+RR+K+LPREGLHP FK+ L G E+ ALA+ E+LKK+RPK TILEAEGE AKSK +KG +    DVMK KRAVHE+IIN  HQ+ S    EK+ +         E +P+   +KK  GSKRKA+SFKDEEY+ISSVPTNQH EAGLS + ++ F SNRL++ VLDL ADD +G+Q+QK+ YHWDKR KKY+KLN+G+RVTASGKVKTESGAKVKANKTGIYK+WKERSHN IS +G S +G A+ P  +A  R   + R FKGG+++  +PNAHVRSE+K+ EQVRKERQKKA KL  +K+N       G G
Sbjct:    5 LQVSSKAELKRREKQKKKAKSGGFESLGLSPNVFRGIKRKGYKVPTPIQRKTMPLIIAGNDVVAMARTGSGKTAAFLVPMIERLKEHVPQSG-VRALILSPTRDLALQTLKFAKDLGRFTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLRTVEYVVFDEADCLFGMGFAEQLHKILTQLSENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKLSFFTLRQEEKHAALLYLVREQISSDEQTLIFVSTKHHVEFLNILFREEGIEPSVCYGEMDQEARKINISRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKMFVHRVGRAARAGRKGTAFSFLTSEDMAYVLDLHLFLSKPIRAAPTEEEVLEDMDGVLSKIDQADANGETVYGRFPQTVIDLVSDRVREVIDSSAELTALTKTCTNAFRLYSKTKPLPSKESIRRSKELPREGLHPFFKNLLAGGELMALAFSERLKKFRPKMTILEAEGEAAKSKHLKGPSGDWVDVMKKKRAVHEQIINLVHQQRSNNNVEKEVK--------SEIIPSKAKDKKEVGSKRKARSFKDEEYYISSVPTNQHTEAGLSVRSNQDFGSNRLESAVLDLVADDTAGMQRQKSVYHWDKRGKKYVKLNNGERVTASGKVKTESGAKVKANKTGIYKKWKERSHNKISLKG-SGEGNADGP--MADRRFEGNKRNFKGGRKQHFVPNAHVRSEIKDIEQVRKERQKKANKLAHMKNNKSSKVNLGSG 774
[Close]
BLAST of XM_017391613.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1W6I8 (RNA helicase {ECO:0000256|ARBA:ARBA00012552} (3.6.4.13 {ECO:0000256|ARBA:ARBA00012552}))

HSP 1 Score: 1165.98 bits (3015), Expect = 0.000e+0
Identity = 579/790 (73.29%), Postives = 674/790 (85.32%), Query Frame = 0
 
Query:    7 LLVSSVTELKKKEKLQKKAKSGGFESLGLSFNVFRGVKRKGYKVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAVLVPMFEKLRNHLDECGGIRALILSPTRDLALQTLKFAQELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLRSVEYVVFDEADCIFSMGFAEQLHQILSKLSDNRQTLLFSATLPSALAEFAKAGLRDPQRVRLDLETKISPDLKLVFFTLRQEEKHAALLYLIEERIRPDEQTLIFVSTKYHVEFLNVLCQERGIRPSVCYGDMDQDARKMAVSQFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPRPKLFVHRVGRAARAGRTGTAFSFVTTEDMPHVLDLHLFLSKPVRAAPTEEEVSHNVNNLMSKIDQAIANGETVYGRFPQTVLDLYADRVRELLDSSTELHSLERPCTKAFRLYYKTKAKPSKESVRRAKKLPREGLHPIFKSSLGGDEITALAYLEQLKKYRPKQTILEAEGEVAKSKKVKGSASQGGDVMKMKRAVHEEIINKEHQKHSRECAEKKYEMDDDMDEVMENVPTAGIEKK-VSGSKRKAKSFKDEEYFISSVPTNQHYEAGLSEKGSRGFESNRLDADVLDLAADDNSGLQKQKASYHWDKRSKKYIKLNSGDRVTASGKVKTESGAKVKANKTGIYKRWKERSHNTISSRGTSRDGGAEEPTNIAGARGRM--DSRRFKGGKQRQSIPNAHVRSELKNNEQVRKERQKKATKLQQLKSNPKRGKKFGKGGKNGK 793
            L VSSV+ELK+KEK +KKAKSGGFESLGLS NV+RG+KRKGYKVPTPIQRKTMPLILSG DVVAMARTGSGKTAA L+PM E+LR H  + GG RAL+LSPTRDLALQTLKF +ELGR+TDLRISLLVGGDSMESQFEELAQ+PDIIIATPGRLMHHLSEV+DMSLR+VEYVVFDEADC+F MGFAEQLH+ILS+LS+NRQTLLFSATLPSALAEFAKAGLR+PQ +RLDLETKISPDLKL FFTLRQEEKHAALLYL+ E IR DEQTLIFVSTK+HVEFLN L +E GI PSVCYGDMD DARK+ +S+FR+RKTMLLIVTD+AARGIDIPLLDNVINWDFPP+PK+FVHRVGRAARAGRTGTAFSF+T+EDM ++LDLHLFLSKP+RAAP+EEEV  +++ +M+KIDQAIANGETVYGRFPQTV+DL +DRVRE++D+S EL  L + CT AFRLY KTK  PS+ES+RRAK LPR GLHPIF+S LGG E+ ALA+ E+LK +RPKQTILEAEGE AKSK ++G + Q  DVMK KRA+HEEII    Q+ S    EK         E    +  +  EKK   GSKRKAKSFKDEEY+IS+VPTN H EAGL+ + ++ F SNRL+A VLDL ADD +G+QKQK+ YHWDKRSKKY+KLNSG+RVTASGK+KTESGAKV ANKTGIYK+WK+RSHN IS +GT  +G  EE T+++G R RM  ++R+FKGGK++  +PN HVRSE+K+ EQVRKERQKKA K+  +++   +GKKF + GK GK
Sbjct:    8 LRVSSVSELKRKEKQKKKAKSGGFESLGLSPNVYRGIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLIPMLERLREHCPQ-GGARALVLSPTRDLALQTLKFTKELGRFTDLRISLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHKILSQLSENRQTLLFSATLPSALAEFAKAGLREPQLLRLDLETKISPDLKLAFFTLRQEEKHAALLYLVREHIRSDEQTLIFVSTKHHVEFLNSLFREEGIEPSVCYGDMDHDARKIHISRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFLTSEDMAYLLDLHLFLSKPIRAAPSEEEVLRDMDAVMAKIDQAIANGETVYGRFPQTVIDLVSDRVREMIDTSAELTYLLKTCTNAFRLYSKTKPLPSRESIRRAKDLPRAGLHPIFRSVLGGGELMALAFSERLKMFRPKQTILEAEGEAAKSKHMQGPSCQWVDVMKKKRAIHEEIIKSVRQQRSVNNVEK---------EASPEITYSNKEKKEARGSKRKAKSFKDEEYYISAVPTNHHMEAGLAVRANQDFGSNRLEAAVLDLVADDGTGMQKQKSHYHWDKRSKKYVKLNSGERVTASGKIKTESGAKVNANKTGIYKKWKQRSHNKISLKGTGGEGNLEESTSMSGDR-RMQGNNRKFKGGKKQNFVPNTHVRSEIKDLEQVRKERQKKANKISHMQNKSGKGKKFNRNGKRGK 786
[Close]
BLAST of XM_017391613.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4LXL8 (RNA helicase {ECO:0000256|ARBA:ARBA00012552} (3.6.4.13 {ECO:0000256|ARBA:ARBA00012552}) (Fragment))

HSP 1 Score: 1165.21 bits (3013), Expect = 0.000e+0
Identity = 574/777 (73.87%), Postives = 663/777 (85.33%), Query Frame = 0
 
Query:    8 LVSSVTELKKKEKLQKKAKSGGFESLGLSFNVFRGVKRKGYKVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAVLVPMFEKLRNHLDECGGIRALILSPTRDLALQTLKFAQELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLRSVEYVVFDEADCIFSMGFAEQLHQILSKLSDNRQTLLFSATLPSALAEFAKAGLRDPQRVRLDLETKISPDLKLVFFTLRQEEKHAALLYLIEERIRPDEQTLIFVSTKYHVEFLNVLCQERGIRPSVCYGDMDQDARKMAVSQFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPRPKLFVHRVGRAARAGRTGTAFSFVTTEDMPHVLDLHLFLSKPVRAAPTEEEVSHNVNNLMSKIDQAIANGETVYGRFPQTVLDLYADRVRELLDSSTELHSLERPCTKAFRLYYKTKAKPSKESVRRAKKLPREGLHPIFKSSLGGDEITALAYLEQLKKYRPKQTILEAEGEVAKSKKVKGSASQGGDVMKMKRAVHEEIINKEHQKHSRECAEKKYEMDDDMDEVMENVPTAGIEKKVSGSKRKAKSFKDEEYFISSVPTNQ-------HYEAGLSEKGSRGFESNRLDADVLDLAADDNSGLQKQKASYHWDKRSKKYIKLNSGDRVTASGKVKTESGAKVKANKTGIYKRWKERSHNTISSRGTSRDGGAEEPTNIAGARGRMDSR--RFKGGKQRQSIPNAHVRSELKNNEQVRKERQKKATKLQQL 775
            +VSS  +LK++EK   KAKSGGFES+GLS NVFRGVKRKGY+VPTPIQRK MP+ILSG DVVAMARTGSGKTAA LVPM EKL  H+ + GG+RALILSPTRDLALQTLKF +ELGRY DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV+DMSLR+VEY+VFDEADC+FSMGFAEQLH+IL++LSDNRQTLLFSATLP ALAEFAKAGLRDP  VRLDLET+ISPDL L FFTLRQEEK+AALLYLI E+I  D+Q+LIFVSTK+HVEFLNVL +E GI PSVCYGDMDQ+ARKM VS+FR+RKTMLLIVTD+AARGIDIPLLDNVINWDFPP+PKLFVHRVGRAARAGR GTAFSF+T+ED+P++LDL+LFLSKPVR APTEEEV  +++ +MS++D AI NGETVYGRFPQTV+DL +DRVRE++DSS EL+SL++ CT AFRLY KTK  PS+ES+RRAK LPREGLHPIFK+ L  +E++ALA+ E+LK +RPKQTILEAEGE AKSK +KG +SQ  DVMK KRA+HEEIIN   Q+ S + A K   M+ ++    E       EKKVSGSKRKAK+FKDEE+FIS+VPTNQ       H EAGLS   ++GFESNRLDA VLDL ADD  GLQKQK  +HWDKRSKKY+KLN+G+RVTASGKVKTESGAK KANKTGIYK+WKERSH+ IS RGTS +G  EE T++AG  G       RF+GG+++ SIPNAHVRSE+K+ +QVRKERQKKA +  Q+
Sbjct:    1 MVSSKADLKRREK--HKAKSGGFESMGLSLNVFRGVKRKGYRVPTPIQRKAMPMILSGADVVAMARTGSGKTAAFLVPMLEKLSQHVPQ-GGVRALILSPTRDLALQTLKFTKELGRYMDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLRTVEYMVFDEADCLFSMGFAEQLHKILTQLSDNRQTLLFSATLPGALAEFAKAGLRDPHLVRLDLETRISPDLTLTFFTLRQEEKYAALLYLIREQIGSDQQSLIFVSTKHHVEFLNVLFREDGIEPSVCYGDMDQEARKMHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPKPKLFVHRVGRAARAGRIGTAFSFITSEDLPYLLDLNLFLSKPVRTAPTEEEVLQDMDAVMSEVDLAILNGETVYGRFPQTVIDLVSDRVREIIDSSAELNSLQKACTNAFRLYSKTKPSPSRESIRRAKDLPREGLHPIFKNVLAANELSALAFSERLKAFRPKQTILEAEGEAAKSKHLKGPSSQWVDVMKKKRAIHEEIINTVRQQRSNDHATKAI-MESEISFPKER------EKKVSGSKRKAKTFKDEEFFISAVPTNQLGASISVHLEAGLSVSANQGFESNRLDAAVLDLVADDKEGLQKQKTRFHWDKRSKKYVKLNNGERVTASGKVKTESGAKTKANKTGIYKKWKERSHSKISLRGTSNEGNVEEATSLAGGNGFRGGNGSRFRGGRKQLSIPNAHVRSEIKDLDQVRKERQKKADRASQM 767
[Close]
BLAST of XM_017391613.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2MKB4 (RNA helicase {ECO:0000256|ARBA:ARBA00012552} (3.6.4.13 {ECO:0000256|ARBA:ARBA00012552}))

HSP 1 Score: 1162.9 bits (3007), Expect = 0.000e+0
Identity = 565/765 (73.86%), Postives = 665/765 (86.93%), Query Frame = 0
 
Query:    7 LLVSSVTELKKKEKLQKKAKSGGFESLGLSFNVFRGVKRKGYKVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAVLVPMFEKLRNHLDECGGIRALILSPTRDLALQTLKFAQELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLRSVEYVVFDEADCIFSMGFAEQLHQILSKLSDNRQTLLFSATLPSALAEFAKAGLRDPQRVRLDLETKISPDLKLVFFTLRQEEKHAALLYLIEERIRPDEQTLIFVSTKYHVEFLNVLCQERGIRPSVCYGDMDQDARKMAVSQFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPRPKLFVHRVGRAARAGRTGTAFSFVTTEDMPHVLDLHLFLSKPVRAAPTEEEVSHNVNNLMSKIDQAIANGETVYGRFPQTVLDLYADRVRELLDSSTELHSLERPCTKAFRLYYKTKAKPSKESVRRAKKLPREGLHPIFKSSLGGDEITALAYLEQLKKYRPKQTILEAEGEVAKSKKVKGSASQGGDVMKMKRAVHEEIINKEHQKHSRECAEKKYEMDDDMDEVMENVPTAGIEKKVSGSKRKAKSFKDEEYFISSVPTNQHYEAGLSEKGSRGFESNRLDADVLDLAADDNSGLQKQKASYHWDKRSKKYIKLNSGDRVTASGKVKTESGAKVKANKTGIYKRWKERSHNTISSRGTSRDGGAEEPTNIAGA-RGRMDSRRFKGGKQRQSIPNAHVRSELKNNEQVRKERQKKAT 770
            +L SS  E K+ EK +KKAKSGGFESL LS +V+RG+KRKGYKVPTPIQRKTMP+ILSG DVVAMARTGSGKTAA LVPM E+LR H+ + GG+RALILSPTRDLALQTLKFAQELGR+TDLRISLLVGGDSMESQFEEL+Q+PDIIIATPGRLMHHLSEV+DMSLR+VEYVVFDEAD +F MGFAEQLHQIL +LS+NRQTLLFSATLPSALAEFAKAGLRDPQ VRLDLETKISPDLKL FFT+R EEKHAALLYLI E+I  D+QTLIFVSTK+HVEFLN L +E GI PSVCYGDMDQDARK+ +S+FR+RKTMLLIVTDVAARGIDIPLLDNVINWDFPP+PK+FVHRVGRAARAGRTGTAFSF+T+EDMP++LDLHLFLSKPVR AP+EEEV  +++ ++SKIDQA ANGET+YGRFPQTV+DL +DRVRE++DSS +L+++++ CT AFRLY KTK  PSKES++RAK LPREGLHPIF++ LGG ++ ALA+ E+LK +RPKQTILEAEGE AKSK+++G + Q  DVMK KRA+HEEIIN  HQKHS    ++  E D ++    E       +K+V GSKRKAKSFKDEEYFISSVPTN H EAGL+ + ++ F SNRL++ VLDL ADD +G++KQK+ YHWDKRSKKYIKLN+GDRVTASGK+KTESGAKVKANKTGIYK+WK++SHN +S RG + +G AE  T+++G  R + +SR F+GGK++  +PNAHVRSE+K+ EQVRKERQKKA 
Sbjct:    7 VLGSSKAEQKRIEKQKKKAKSGGFESLNLSPDVYRGIKRKGYKVPTPIQRKTMPIILSGSDVVAMARTGSGKTAAFLVPMLERLRQHVPQ-GGVRALILSPTRDLALQTLKFAQELGRFTDLRISLLVGGDSMESQFEELSQSPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADSLFGMGFAEQLHQILVQLSENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKLAFFTVRHEEKHAALLYLIREQITSDQQTLIFVSTKHHVEFLNTLFREEGIEPSVCYGDMDQDARKIHISRFRARKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFLTSEDMPYLLDLHLFLSKPVRPAPSEEEVLRDMDGVISKIDQAGANGETIYGRFPQTVIDLVSDRVREIIDSSADLYAMQKTCTNAFRLYSKTKPLPSKESIKRAKDLPREGLHPIFRNVLGGGDLMALAFSERLKMFRPKQTILEAEGEAAKSKRLQGPSRQWVDVMKKKRAIHEEIINLVHQKHSTNHVDE--EFDPEITSSKEE------KKEVCGSKRKAKSFKDEEYFISSVPTNHHMEAGLAVRANQDFGSNRLESAVLDLVADDGAGMKKQKSQYHWDKRSKKYIKLNNGDRVTASGKIKTESGAKVKANKTGIYKKWKQQSHNKVSLRGANSEGNAEGSTSMSGDRRSQGNSRNFRGGKKQHHVPNAHVRSEIKDLEQVRKERQKKAN 762
[Close]
BLAST of XM_017391613.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9T0X5 (RNA helicase {ECO:0000256|ARBA:ARBA00012552} (3.6.4.13 {ECO:0000256|ARBA:ARBA00012552}))

HSP 1 Score: 1162.9 bits (3007), Expect = 0.000e+0
Identity = 568/771 (73.67%), Postives = 662/771 (85.86%), Query Frame = 0
 
Query:    8 LVSSVTELKKKEKLQKKAKSGGFESLGLSFNVFRGVKRKGYKVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAVLVPMFEKLRNHLDECGGIRALILSPTRDLALQTLKFAQELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLRSVEYVVFDEADCIFSMGFAEQLHQILSKLSDNRQTLLFSATLPSALAEFAKAGLRDPQRVRLDLETKISPDLKLVFFTLRQEEKHAALLYLIEERIRPDEQTLIFVSTKYHVEFLNVLCQERGIRPSVCYGDMDQDARKMAVSQFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPRPKLFVHRVGRAARAGRTGTAFSFVTTEDMPHVLDLHLFLSKPVRAAPTEEEVSHNVNNLMSKIDQAIANGETVYGRFPQTVLDLYADRVRELLDSSTELHSLERPCTKAFRLYYKTKAKPSKESVRRAKKLPREGLHPIFKSSLGGDEITALAYLEQLKKYRPKQTILEAEGEVAKSKKVKGSASQGGDVMKMKRAVHEEIINKEHQKHSRECAEKKYEMDDDMDEVMENVP-TAGIEKK-VSGSKRKAKSFKDEEYFISSVPTNQHYEAGLSEKGSRGFESNRLDADVLDLAADDNSGLQKQKASYHWDKRSKKYIKLNSGDRVTASGKVKTESGAKVKANKTGIYKRWKERSHNTISSRGTSRDGGAEEPTNIAG-ARGRMDSRRFKGGKQRQSIPNAHVRSELKNNEQVRKERQKKATKLQQL 775
            LVSS  ELK K+ L+KKAKSGGFESL LS NV+ GVKRKGY+VPTPIQRKTMP+ILSG DVVAMARTGSGKTAA L+PM E+L+ H+ + GG RALILSPTRDLALQTLKF +ELGR+TDLR SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV+DMSLR+VEYVVFDEAD +F MGFAEQLHQIL++LS+NRQTLLFSATLPSALAEFAKAGLRDPQ VRLD++TKISPDLK VFFTLRQEEK+AALLYL+ E I  D+QTLIFVSTK+HVEFLN+L +E GI PSVCYGDMDQDARK+ VS+FR++KTMLLIVTDVAARGIDIPLLDNVINWDFPP+PK+FVHRVGRAARAGRTGTAFSFVT+EDMP++LDLHLFLSKP+RAAPTEEEV  +++ +M KI++A+ANGET+YGRFPQTVLDL +DRVRE++DSS EL SL++ CT AFRLY KTK  P+KES+RR K LP EG+HPIFK+ LGG E+TALA+ E+LK +RPKQTILEAEGE AKSK  +G +SQ  DVMK KRA+HE+IIN  HQ  S +  +K         EV   +P ++G EKK   GSKRKAKSFKDEEY+ISSVPTN H EAGLS + + GF SNRL+A VLDL ADD+ G+QKQK  YHWDKR KKYIKLN+G+RVTASGKVKTE GAKVKANKTGIYK+WKERSH  +S +G S +G AE+ +  +G  R R ++R+FKGGK++  +PNA+VRSE+K+ EQVRKERQKKA+++  +
Sbjct:    7 LVSSKAELKHKQNLKKKAKSGGFESLNLSPNVYNGVKRKGYRVPTPIQRKTMPIILSGSDVVAMARTGSGKTAAFLIPMLERLKQHVSQ-GGARALILSPTRDLALQTLKFTKELGRFTDLRASLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDVDTKISPDLKTVFFTLRQEEKYAALLYLVREHISSDQQTLIFVSTKHHVEFLNILFREEGIEPSVCYGDMDQDARKIHVSRFRAQKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMPYLLDLHLFLSKPIRAAPTEEEVVKDMDRVMMKINEAVANGETIYGRFPQTVLDLVSDRVREVIDSSAELTSLQKTCTNAFRLYTKTKPLPAKESIRRVKDLPHEGIHPIFKNGLGGGELTALAFSERLKAFRPKQTILEAEGEAAKSKNARGPSSQWVDVMKRKRAIHEKIINLVHQHRSIQQEDK---------EVESEIPSSSGKEKKEARGSKRKAKSFKDEEYYISSVPTNHHTEAGLSVRANEGFGSNRLEAAVLDLVADDSGGMQKQKTVYHWDKRGKKYIKLNNGERVTASGKVKTEGGAKVKANKTGIYKKWKERSHRKVSLKGASDEGNAEQTSTFSGDNRLRGNNRKFKGGKKQNFMPNANVRSEIKSLEQVRKERQKKASQMSHM 767
[Close]
BLAST of XM_017391613.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834GRZ1 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7139480.1}))

HSP 1 Score: 1162.52 bits (3006), Expect = 0.000e+0
Identity = 575/771 (74.58%), Postives = 662/771 (85.86%), Query Frame = 0
 
Query:    7 LLVSSVTELKKKEKLQKKAKSGGFESLGLSFNVFRGVKRKGYKVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAVLVPMFEKLRNHLDECGGIRALILSPTRDLALQTLKFAQELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLRSVEYVVFDEADCIFSMGFAEQLHQILSKLSDNRQTLLFSATLPSALAEFAKAGLRDPQRVRLDLETKISPDLKLVFFTLRQEEKHAALLYLIEERIRPDEQTLIFVSTKYHVEFLNVLCQERGIRPSVCYGDMDQDARKMAVSQFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPRPKLFVHRVGRAARAGRTGTAFSFVTTEDMPHVLDLHLFLSKPVRAAPTEEEVSHNVNNLMSKIDQAIANGETVYGRFPQTVLDLYADRVRELLDSSTELHSLERPCTKAFRLYYKTKAKPSKESVRRAKKLPREGLHPIFKSSLGGDEITALAYLEQLKKYRPKQTILEAEGEVAKSKKVKGSASQGGDVMKMKRAVHEEIINKEHQKHSRECAEKKYEMDDDMDEVMENVPTAGIEKKVSGSKRKAKSFKDEEYFISSVPTNQHYEAGLSEKGSRGFESNRLDADVLDLAADDNSGLQKQKASYHWDKRSKKYIKLNSGDRVTASGKVKTESGAKVKANKTGIYKRWKERSHNTISSRGTSRDGGAEEPTNIAGARGRMDSR--RFKGGKQRQSIPNAHVRSELKNNEQVRKERQKKATKLQQL 775
            +LVSS  +LK++EK +K AKSGGFES+GLS NVFRGVKRKGY+VPTPIQRK MPLILSG DVVAMARTGSGKTAA LVPM EKL  H+ + GG+RALILSPTRDLALQTLKF +EL RY DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV+DMSLR+VEY+VFDEADC+FSMGFAEQLH+IL++LSDNRQTLLFSATLP ALAEFAKAGLRDP  VRLDLET+ISPDL L FFTLRQEEK AALLYLI E+I  D+Q+LIFVSTK+HVEFLNVL +E GI PSVCYGDMDQ+ARKM VS+FR+RKTMLLIVTD+AARGIDIPLLDNVINWDFPP+PKLFVHRVGRAARAGR GTAFSF+T+ED+P++LDL+LFLSKPVRAAPTEEEV  +++ +MS++D AI NGETVYGRFPQTV+DL +DRVRE++DSS EL+SL++ CT AFRLY KTK  PS+ES+RRAK LPREGLHPIFK+ L  +E++ALA+ E+LK +RPKQTILEAEGE AKSK +KG +SQ  DVMK KRA+HE IIN   Q+ S + A K   M+ ++    E       EKKVSG KRKAK+FKDEE+FIS+VPTNQH EAGLS   ++GFESNRLDA VLDL ADD  GLQKQK  +HWDKRSKKY+KLN+G+RVTASGKVKTESGAK KANKTGIYK+WKERSH+ IS RGTS +G  EE TN+AG  G       RF+GG+++ SIPNAHVRSE+K+ +QVRKERQKKA +  Q+
Sbjct:    3 VLVSSKADLKRREKHKKAAKSGGFESMGLSLNVFRGVKRKGYRVPTPIQRKAMPLILSGADVVAMARTGSGKTAAFLVPMLEKLSQHVPQ-GGVRALILSPTRDLALQTLKFTKELSRYMDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLRTVEYMVFDEADCLFSMGFAEQLHKILTQLSDNRQTLLFSATLPGALAEFAKAGLRDPHLVRLDLETRISPDLTLTFFTLRQEEKCAALLYLIREQIGSDQQSLIFVSTKHHVEFLNVLFREDGIEPSVCYGDMDQEARKMHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPKPKLFVHRVGRAARAGRIGTAFSFITSEDLPYLLDLNLFLSKPVRAAPTEEEVLQDMDAVMSEVDLAILNGETVYGRFPQTVIDLVSDRVREIIDSSAELNSLQKACTNAFRLYSKTKPSPSRESIRRAKDLPREGLHPIFKNILAANELSALAFSERLKAFRPKQTILEAEGEAAKSKHLKGPSSQWVDVMKKKRAIHEAIINTVRQQRSNDHATKAI-MESEISFPKER------EKKVSGFKRKAKTFKDEEFFISAVPTNQHLEAGLSVSANQGFESNRLDAAVLDLVADDKEGLQKQKTRFHWDKRSKKYVKLNNGERVTASGKVKTESGAKAKANKTGIYKKWKERSHSKISLRGTSNEGNVEEATNLAGGNGFRGGNGSRFRGGRKQLSIPNAHVRSEIKDLDQVRKERQKKADRASQM 765
[Close]
BLAST of XM_017391613.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4T354 (RNA helicase {ECO:0000256|ARBA:ARBA00012552} (3.6.4.13 {ECO:0000256|ARBA:ARBA00012552}))

HSP 1 Score: 1160.98 bits (3002), Expect = 0.000e+0
Identity = 579/789 (73.38%), Postives = 672/789 (85.17%), Query Frame = 0
 
Query:    8 LVSSVTELKKKEKLQKKAKSGGFESLGLSFNVFRGVKRKGYKVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAVLVPMFEKLRNHLDECGGIRALILSPTRDLALQTLKFAQELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLRSVEYVVFDEADCIFSMGFAEQLHQILSKLSDNRQTLLFSATLPSALAEFAKAGLRDPQRVRLDLETKISPDLKLVFFTLRQEEKHAALLYLIEERIRPDEQTLIFVSTKYHVEFLNVLCQERGIRPSVCYGDMDQDARKMAVSQFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPRPKLFVHRVGRAARAGRTGTAFSFVTTEDMPHVLDLHLFLSKPVRAAPTEEEVSHNVNNLMSKIDQAIANGETVYGRFPQTVLDLYADRVRELLDSSTELHSLERPCTKAFRLYYKTKAKPSKESVRRAKKLPREGLHPIFKSSLGGDEITALAYLEQLKKYRPKQTILEAEGEVAKSKKVKGSASQGGDVMKMKRAVHEEIINKEHQKHSRECAEKKYEMDDDMDEVMENVPTAGIEKKVSGSKRKAKSFKDEEYFISSVPTNQHYEAGLSEKGSRGFESNRLDADVLDLAADDNSGLQKQKASYHWDKRSKKYIKLNSGDRVTASGK-VKTESGAKVKANKTGIYKRWKERSHNTISSRGTSRDGGAEEPTNIAGARGR-MDSRRFKGGK-QRQSIPNAHVRSELKNNEQVRKERQKKATKLQQLKSNPKRGKKFGKGGKNGK 793
            LVSS  ELK++EK +KK+KSGGFESL LS NVFR +KRKGYKVPTPIQRKTMPLILSG DVVAMARTGSGKTAA LVPM ++L  H+ + GG+RALILSPTRDLALQTLKF +ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSL+SVEYVVFDEADC+F MGFAEQLH+IL +LS+NRQTLLFSATLPSALAEFAKAGLRDP  VRLD++TKISPDLKL FFTLRQEEKHAALLY+I E I  D+QTLIFVSTK+HVEFLNVL +E G+ PSVCYGDMDQDARK+ VS+FR+RKTM LIVTDVAARGIDIPLLDNVINWDFPP+PK+FVHRVGRAARAGRTGTAFSFVT+EDM ++LDLHLFLSKP+RA P+EEEV  +++ +MSKIDQAIANGET+YGRFPQTV+DL +DRVRE++DSS +L+SL+R CT AFRLY KTK  PSKES+RR K LPREGLHP+FK+ L G E+ ALA+ E+LK +RPKQTILEAEGE A+SK ++G +SQ  DVMK KRAVHE+IIN  HQ+ S +  EK+ E++ D     E        K+  GSKRKAK+FKDEEYFISSVPTN H EAGLS +  +GF  NRL+A VLDL ADD+ GLQKQK  YHWDKR KKYIKLN+G+RV+ASGK VKTESGA+VKA KTGIYK+WKERSH  +  +G S +G AEE T++ G R    ++R+F+GGK Q++S+PNAHVRSE+K+ +QVRKERQKKA ++  +K   ++GKKF K GK GK
Sbjct:    3 LVSSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRATPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVELEADSSMAKEI-------KETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAQVKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVRSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSKNGKRGK 783
Match NameStatsDescription
A0A5J5BV39E-Value: 0.000e+0, PID: 76.72RNA helicase {ECO:0000256|ARBA:ARBA00012552} (3.6.... [more]
A0A5B7BIN5E-Value: 0.000e+0, PID: 75.94RNA helicase {ECO:0000256|ARBA:ARBA00012552} (3.6.... [more]
A0A2P2JPG4E-Value: 0.000e+0, PID: 72.81RNA helicase {ECO:0000256|ARBA:ARBA00012552} (3.6.... [more]
W9QI16E-Value: 0.000e+0, PID: 73.40RNA helicase {ECO:0000256|ARBA:ARBA00012552} (3.6.... [more]
A0A6A1W6I8E-Value: 0.000e+0, PID: 73.29RNA helicase {ECO:0000256|ARBA:ARBA00012552} (3.6.... [more]
A0A6A4LXL8E-Value: 0.000e+0, PID: 73.87RNA helicase {ECO:0000256|ARBA:ARBA00012552} (3.6.... [more]
A0A7N2MKB4E-Value: 0.000e+0, PID: 73.86RNA helicase {ECO:0000256|ARBA:ARBA00012552} (3.6.... [more]
B9T0X5E-Value: 0.000e+0, PID: 73.67RNA helicase {ECO:0000256|ARBA:ARBA00012552} (3.6.... [more]
A0A834GRZ1E-Value: 0.000e+0, PID: 74.58(Uncharacterized protein {ECO:0000313|EMBL:KAF7139... [more]
V4T354E-Value: 0.000e+0, PID: 73.38RNA helicase {ECO:0000256|ARBA:ARBA00012552} (3.6.... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.